Multiple sequence alignment - TraesCS6B01G111400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G111400 chr6B 100.000 4402 0 0 1 4402 93425602 93421201 0.000000e+00 8130
1 TraesCS6B01G111400 chrUn 93.552 2869 104 26 843 3670 19249748 19252576 0.000000e+00 4198
2 TraesCS6B01G111400 chrUn 86.376 367 41 6 1 364 19248975 19249335 4.130000e-105 392
3 TraesCS6B01G111400 chrUn 82.282 412 25 17 3666 4035 19266889 19267294 3.310000e-81 313
4 TraesCS6B01G111400 chrUn 88.462 260 10 12 4032 4291 19271480 19271719 3.330000e-76 296
5 TraesCS6B01G111400 chrUn 89.048 210 19 3 3994 4203 19272329 19272534 1.570000e-64 257
6 TraesCS6B01G111400 chrUn 86.184 152 12 5 487 630 19249355 19249505 5.890000e-34 156
7 TraesCS6B01G111400 chr6A 92.706 2783 112 30 1567 4293 57682955 57680208 0.000000e+00 3930
8 TraesCS6B01G111400 chr6A 94.196 448 13 4 849 1295 57684200 57683765 0.000000e+00 671
9 TraesCS6B01G111400 chr6A 87.442 215 12 5 1359 1559 57683421 57683208 2.650000e-57 233
10 TraesCS6B01G111400 chr1B 86.341 1391 138 29 2340 3701 61900687 61902054 0.000000e+00 1469
11 TraesCS6B01G111400 chr1B 84.554 628 70 18 1583 2202 61900001 61900609 8.150000e-167 597
12 TraesCS6B01G111400 chr1B 90.323 310 16 7 1025 1329 61899426 61899726 1.150000e-105 394
13 TraesCS6B01G111400 chr1B 79.751 321 41 8 2114 2415 653845614 653845299 1.240000e-50 211
14 TraesCS6B01G111400 chr1B 93.421 76 5 0 2112 2187 653851174 653851099 3.600000e-21 113
15 TraesCS6B01G111400 chr1D 86.158 1351 133 31 2340 3669 41750730 41752047 0.000000e+00 1410
16 TraesCS6B01G111400 chr1D 80.303 660 95 22 1561 2202 41750017 41750659 2.400000e-127 466
17 TraesCS6B01G111400 chr1D 91.275 298 15 4 1025 1317 41749652 41749943 3.190000e-106 396
18 TraesCS6B01G111400 chr1A 88.837 860 84 9 2710 3562 41749150 41750004 0.000000e+00 1046
19 TraesCS6B01G111400 chr1A 81.005 637 89 24 1591 2203 41748019 41748647 1.110000e-130 477
20 TraesCS6B01G111400 chr1A 88.122 362 27 10 979 1330 41747516 41747871 2.450000e-112 416
21 TraesCS6B01G111400 chr1A 85.014 347 30 12 2350 2695 41748722 41749047 2.540000e-87 333
22 TraesCS6B01G111400 chr7B 78.969 485 79 18 1720 2200 641744662 641744197 4.280000e-80 309
23 TraesCS6B01G111400 chr7B 79.449 399 56 19 2474 2857 641366773 641367160 4.370000e-65 259
24 TraesCS6B01G111400 chr7B 78.118 425 61 17 2477 2881 641744197 641743785 1.580000e-59 241
25 TraesCS6B01G111400 chr7B 77.546 383 68 10 1720 2088 641366281 641366659 9.590000e-52 215
26 TraesCS6B01G111400 chr7D 79.950 399 51 19 2474 2857 577881815 577882199 2.610000e-67 267
27 TraesCS6B01G111400 chr7D 78.796 382 64 13 1720 2088 577919294 577919671 1.580000e-59 241
28 TraesCS6B01G111400 chr7D 78.412 403 57 18 2474 2857 577919785 577920176 7.360000e-58 235
29 TraesCS6B01G111400 chr7A 91.061 179 16 0 1111 1289 692500202 692500380 4.400000e-60 243
30 TraesCS6B01G111400 chr7A 78.385 384 64 14 1720 2088 670164747 670165126 9.520000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G111400 chr6B 93421201 93425602 4401 True 8130.000000 8130 100.000000 1 4402 1 chr6B.!!$R1 4401
1 TraesCS6B01G111400 chrUn 19248975 19252576 3601 False 1582.000000 4198 88.704000 1 3670 3 chrUn.!!$F2 3669
2 TraesCS6B01G111400 chrUn 19271480 19272534 1054 False 276.500000 296 88.755000 3994 4291 2 chrUn.!!$F3 297
3 TraesCS6B01G111400 chr6A 57680208 57684200 3992 True 1611.333333 3930 91.448000 849 4293 3 chr6A.!!$R1 3444
4 TraesCS6B01G111400 chr1B 61899426 61902054 2628 False 820.000000 1469 87.072667 1025 3701 3 chr1B.!!$F1 2676
5 TraesCS6B01G111400 chr1D 41749652 41752047 2395 False 757.333333 1410 85.912000 1025 3669 3 chr1D.!!$F1 2644
6 TraesCS6B01G111400 chr1A 41747516 41750004 2488 False 568.000000 1046 85.744500 979 3562 4 chr1A.!!$F1 2583
7 TraesCS6B01G111400 chr7B 641743785 641744662 877 True 275.000000 309 78.543500 1720 2881 2 chr7B.!!$R1 1161
8 TraesCS6B01G111400 chr7B 641366281 641367160 879 False 237.000000 259 78.497500 1720 2857 2 chr7B.!!$F1 1137
9 TraesCS6B01G111400 chr7D 577919294 577920176 882 False 238.000000 241 78.604000 1720 2857 2 chr7D.!!$F2 1137

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 172 0.037303 ATGGATGCCGAAGCCCTATG 59.963 55.000 0.00 0.00 38.69 2.23 F
375 378 0.250234 TGAACAATCCCCGCTGAGAG 59.750 55.000 0.00 0.00 0.00 3.20 F
484 487 0.396435 TGACTCCTCATGTTTGCGGT 59.604 50.000 0.00 0.00 0.00 5.68 F
485 488 1.202758 TGACTCCTCATGTTTGCGGTT 60.203 47.619 0.00 0.00 0.00 4.44 F
856 928 1.331214 ACAAATTGGTGCAGTGGAGG 58.669 50.000 0.00 0.00 0.00 4.30 F
2382 3082 1.248785 AACAGCCTGCATGCTTCTGG 61.249 55.000 26.12 20.07 40.32 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 1402 1.604185 GCACCGAGCAGAGATGGTATC 60.604 57.143 0.00 0.0 44.79 2.24 R
1447 1841 1.890876 ATTCAACTGCACTACGGCAA 58.109 45.000 0.00 0.0 44.40 4.52 R
1472 1872 2.100749 GCAAATTACCACCATAGCCCAC 59.899 50.000 0.00 0.0 0.00 4.61 R
2257 2950 2.578021 ACAAGATTCACCAGCCATAGGT 59.422 45.455 0.00 0.0 40.85 3.08 R
2554 3254 2.419297 GGATCAACACCAGGCTCTGTAG 60.419 54.545 0.00 0.0 0.00 2.74 R
4302 5194 0.179034 GGAGGCATTGCAGGTAGAGG 60.179 60.000 11.39 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.914923 GTTAAACCACTTTGTTGATTTGAAATC 57.085 29.630 10.85 10.85 0.00 2.17
158 160 3.574354 AGGAGGAAAAGAGATGGATGC 57.426 47.619 0.00 0.00 0.00 3.91
160 162 2.216898 GAGGAAAAGAGATGGATGCCG 58.783 52.381 0.00 0.00 0.00 5.69
169 171 0.326264 GATGGATGCCGAAGCCCTAT 59.674 55.000 0.00 0.00 38.69 2.57
170 172 0.037303 ATGGATGCCGAAGCCCTATG 59.963 55.000 0.00 0.00 38.69 2.23
173 175 1.608283 GGATGCCGAAGCCCTATGTAC 60.608 57.143 0.00 0.00 38.69 2.90
175 177 1.200519 TGCCGAAGCCCTATGTACTT 58.799 50.000 0.00 0.00 38.69 2.24
178 180 2.354821 GCCGAAGCCCTATGTACTTTTG 59.645 50.000 0.00 0.00 0.00 2.44
182 184 4.332819 CGAAGCCCTATGTACTTTTGAAGG 59.667 45.833 0.00 0.00 0.00 3.46
216 219 7.006509 AGGAAAGATTCTTCATTTGACTTCCA 58.993 34.615 0.00 0.00 0.00 3.53
219 222 8.469309 AAAGATTCTTCATTTGACTTCCAGAA 57.531 30.769 0.00 0.00 0.00 3.02
232 235 4.618635 ACTTCCAGAAGATGAGATCTCCA 58.381 43.478 20.03 8.63 40.79 3.86
235 238 3.902467 TCCAGAAGATGAGATCTCCATGG 59.098 47.826 20.03 16.46 39.08 3.66
252 255 1.678970 GGCCTGGCTCCACGAAATT 60.679 57.895 19.68 0.00 0.00 1.82
253 256 1.657751 GGCCTGGCTCCACGAAATTC 61.658 60.000 19.68 0.00 0.00 2.17
256 259 1.339055 CCTGGCTCCACGAAATTCTCA 60.339 52.381 0.00 0.00 0.00 3.27
271 274 9.918630 ACGAAATTCTCAAATCTGAAATTCAAT 57.081 25.926 0.00 0.00 33.90 2.57
308 311 1.081774 GCCTGAGATCGTCGATCCG 60.082 63.158 27.43 17.36 39.66 4.18
323 326 1.952102 ATCCGCGAACTAGCCGGAAA 61.952 55.000 8.23 0.00 40.83 3.13
330 333 2.202892 CTAGCCGGAAAGCGGTCC 60.203 66.667 5.05 0.00 38.01 4.46
354 357 1.377202 CCACAACCGTGAGATGGGG 60.377 63.158 0.00 0.00 46.80 4.96
364 367 2.874701 CGTGAGATGGGGATGAACAATC 59.125 50.000 0.00 0.00 34.19 2.67
373 376 1.303309 GATGAACAATCCCCGCTGAG 58.697 55.000 0.00 0.00 0.00 3.35
374 377 0.911769 ATGAACAATCCCCGCTGAGA 59.088 50.000 0.00 0.00 0.00 3.27
375 378 0.250234 TGAACAATCCCCGCTGAGAG 59.750 55.000 0.00 0.00 0.00 3.20
384 387 2.125350 CGCTGAGAGGGCCAACTC 60.125 66.667 19.21 19.21 37.77 3.01
385 388 2.270527 GCTGAGAGGGCCAACTCC 59.729 66.667 21.80 8.90 38.26 3.85
386 389 2.581354 CTGAGAGGGCCAACTCCG 59.419 66.667 21.80 14.86 38.26 4.63
387 390 3.672295 CTGAGAGGGCCAACTCCGC 62.672 68.421 21.80 8.58 38.26 5.54
388 391 3.706373 GAGAGGGCCAACTCCGCA 61.706 66.667 16.44 0.00 38.26 5.69
389 392 3.249189 AGAGGGCCAACTCCGCAA 61.249 61.111 6.18 0.00 38.26 4.85
390 393 3.056328 GAGGGCCAACTCCGCAAC 61.056 66.667 6.18 0.00 0.00 4.17
408 411 3.843240 GCGGCGCAAGAGTCGAAG 61.843 66.667 29.21 0.00 43.02 3.79
409 412 2.126463 CGGCGCAAGAGTCGAAGA 60.126 61.111 10.83 0.00 43.02 2.87
420 423 2.102357 TCGAAGACGATGAGCGCC 59.898 61.111 2.29 0.00 46.04 6.53
421 424 2.202610 CGAAGACGATGAGCGCCA 60.203 61.111 2.29 1.52 46.04 5.69
422 425 2.508891 CGAAGACGATGAGCGCCAC 61.509 63.158 2.29 0.00 46.04 5.01
423 426 1.446099 GAAGACGATGAGCGCCACA 60.446 57.895 2.29 5.39 46.04 4.17
424 427 1.005037 AAGACGATGAGCGCCACAA 60.005 52.632 2.29 0.00 46.04 3.33
426 429 1.016130 AGACGATGAGCGCCACAAAG 61.016 55.000 2.29 6.28 46.04 2.77
428 431 1.016130 ACGATGAGCGCCACAAAGAG 61.016 55.000 2.29 1.39 46.04 2.85
430 433 1.442769 GATGAGCGCCACAAAGAGAA 58.557 50.000 2.29 0.00 0.00 2.87
431 434 2.012673 GATGAGCGCCACAAAGAGAAT 58.987 47.619 2.29 0.00 0.00 2.40
433 436 3.266510 TGAGCGCCACAAAGAGAATAT 57.733 42.857 2.29 0.00 0.00 1.28
435 438 4.960938 TGAGCGCCACAAAGAGAATATAT 58.039 39.130 2.29 0.00 0.00 0.86
436 439 4.991056 TGAGCGCCACAAAGAGAATATATC 59.009 41.667 2.29 0.00 0.00 1.63
448 451 5.427036 GAGAATATATCTCGTCCGGGATC 57.573 47.826 5.15 0.00 44.89 3.36
449 452 4.856509 AGAATATATCTCGTCCGGGATCA 58.143 43.478 5.15 0.00 36.60 2.92
450 453 4.884744 AGAATATATCTCGTCCGGGATCAG 59.115 45.833 5.15 0.00 36.60 2.90
453 456 2.002505 ATCTCGTCCGGGATCAGAAT 57.997 50.000 0.00 0.00 26.99 2.40
455 458 3.156288 TCTCGTCCGGGATCAGAATAT 57.844 47.619 0.00 0.00 0.00 1.28
456 459 4.296621 TCTCGTCCGGGATCAGAATATA 57.703 45.455 0.00 0.00 0.00 0.86
457 460 4.262617 TCTCGTCCGGGATCAGAATATAG 58.737 47.826 0.00 0.00 0.00 1.31
458 461 4.011023 CTCGTCCGGGATCAGAATATAGT 58.989 47.826 0.00 0.00 0.00 2.12
459 462 3.756963 TCGTCCGGGATCAGAATATAGTG 59.243 47.826 0.00 0.00 0.00 2.74
460 463 3.673594 CGTCCGGGATCAGAATATAGTGC 60.674 52.174 0.00 0.00 0.00 4.40
461 464 3.258372 GTCCGGGATCAGAATATAGTGCA 59.742 47.826 0.00 0.00 0.00 4.57
462 465 3.511540 TCCGGGATCAGAATATAGTGCAG 59.488 47.826 0.00 0.00 0.00 4.41
463 466 3.259374 CCGGGATCAGAATATAGTGCAGT 59.741 47.826 0.00 0.00 0.00 4.40
465 468 5.300752 CGGGATCAGAATATAGTGCAGTTT 58.699 41.667 0.00 0.00 0.00 2.66
466 469 5.178252 CGGGATCAGAATATAGTGCAGTTTG 59.822 44.000 0.00 0.00 0.00 2.93
468 471 6.203723 GGGATCAGAATATAGTGCAGTTTGAC 59.796 42.308 0.00 0.00 0.00 3.18
469 472 6.989169 GGATCAGAATATAGTGCAGTTTGACT 59.011 38.462 0.00 0.00 0.00 3.41
470 473 7.170658 GGATCAGAATATAGTGCAGTTTGACTC 59.829 40.741 0.00 0.00 0.00 3.36
471 474 6.341316 TCAGAATATAGTGCAGTTTGACTCC 58.659 40.000 0.00 0.00 0.00 3.85
473 476 6.478344 CAGAATATAGTGCAGTTTGACTCCTC 59.522 42.308 0.00 0.00 0.00 3.71
475 478 4.833478 ATAGTGCAGTTTGACTCCTCAT 57.167 40.909 0.00 0.00 0.00 2.90
476 479 2.775890 AGTGCAGTTTGACTCCTCATG 58.224 47.619 0.00 0.00 0.00 3.07
477 480 2.105477 AGTGCAGTTTGACTCCTCATGT 59.895 45.455 0.00 0.00 0.00 3.21
479 482 3.316308 GTGCAGTTTGACTCCTCATGTTT 59.684 43.478 0.00 0.00 0.00 2.83
481 484 3.854784 GCAGTTTGACTCCTCATGTTTGC 60.855 47.826 0.00 0.00 0.00 3.68
483 486 1.522668 TTGACTCCTCATGTTTGCGG 58.477 50.000 0.00 0.00 0.00 5.69
484 487 0.396435 TGACTCCTCATGTTTGCGGT 59.604 50.000 0.00 0.00 0.00 5.68
485 488 1.202758 TGACTCCTCATGTTTGCGGTT 60.203 47.619 0.00 0.00 0.00 4.44
502 505 4.828387 TGCGGTTACCTTTTATTTGACCTT 59.172 37.500 0.00 0.00 0.00 3.50
503 506 5.158494 GCGGTTACCTTTTATTTGACCTTG 58.842 41.667 0.00 0.00 0.00 3.61
507 516 6.376177 GTTACCTTTTATTTGACCTTGGACG 58.624 40.000 0.00 0.00 0.00 4.79
522 531 5.011329 ACCTTGGACGAACTAGTTTCATACA 59.989 40.000 10.02 2.67 33.24 2.29
530 539 5.121611 CGAACTAGTTTCATACATGGCACAA 59.878 40.000 10.02 0.00 36.28 3.33
583 593 9.643735 AGGAGTATACTATAATAGCCATACACC 57.356 37.037 5.09 0.00 37.65 4.16
742 813 8.783660 TTTTCAGTCTATATCAGTAGATGGGT 57.216 34.615 0.00 0.00 35.67 4.51
744 815 8.410673 TTCAGTCTATATCAGTAGATGGGTTC 57.589 38.462 0.00 0.00 35.67 3.62
757 828 6.717084 AGTAGATGGGTTCTTCAAAGGAAAAG 59.283 38.462 0.00 0.00 35.79 2.27
758 829 5.458595 AGATGGGTTCTTCAAAGGAAAAGT 58.541 37.500 0.00 0.00 31.35 2.66
761 832 3.492656 GGGTTCTTCAAAGGAAAAGTGGC 60.493 47.826 0.00 0.00 31.35 5.01
764 835 2.958355 TCTTCAAAGGAAAAGTGGCTGG 59.042 45.455 0.00 0.00 31.35 4.85
789 861 7.039011 GGAAACATAAGGGAAAACAGAGGAAAT 60.039 37.037 0.00 0.00 0.00 2.17
790 862 7.468141 AACATAAGGGAAAACAGAGGAAATC 57.532 36.000 0.00 0.00 0.00 2.17
791 863 6.552008 ACATAAGGGAAAACAGAGGAAATCA 58.448 36.000 0.00 0.00 0.00 2.57
792 864 6.434340 ACATAAGGGAAAACAGAGGAAATCAC 59.566 38.462 0.00 0.00 0.00 3.06
793 865 4.453480 AGGGAAAACAGAGGAAATCACA 57.547 40.909 0.00 0.00 0.00 3.58
798 870 6.992123 GGGAAAACAGAGGAAATCACAAAAAT 59.008 34.615 0.00 0.00 0.00 1.82
799 871 7.041848 GGGAAAACAGAGGAAATCACAAAAATG 60.042 37.037 0.00 0.00 0.00 2.32
800 872 7.041848 GGAAAACAGAGGAAATCACAAAAATGG 60.042 37.037 0.00 0.00 0.00 3.16
802 874 5.147032 ACAGAGGAAATCACAAAAATGGGA 58.853 37.500 0.00 0.00 0.00 4.37
804 876 6.099557 ACAGAGGAAATCACAAAAATGGGAAA 59.900 34.615 0.00 0.00 0.00 3.13
805 877 6.424812 CAGAGGAAATCACAAAAATGGGAAAC 59.575 38.462 0.00 0.00 0.00 2.78
806 878 6.099557 AGAGGAAATCACAAAAATGGGAAACA 59.900 34.615 0.00 0.00 0.00 2.83
807 879 6.657875 AGGAAATCACAAAAATGGGAAACAA 58.342 32.000 0.00 0.00 0.00 2.83
808 880 7.115414 AGGAAATCACAAAAATGGGAAACAAA 58.885 30.769 0.00 0.00 0.00 2.83
809 881 7.779326 AGGAAATCACAAAAATGGGAAACAAAT 59.221 29.630 0.00 0.00 0.00 2.32
812 884 9.583765 AAATCACAAAAATGGGAAACAAATTTG 57.416 25.926 16.67 16.67 41.08 2.32
813 885 6.558909 TCACAAAAATGGGAAACAAATTTGC 58.441 32.000 18.12 1.99 39.96 3.68
814 886 6.376581 TCACAAAAATGGGAAACAAATTTGCT 59.623 30.769 18.12 2.78 39.96 3.91
815 887 7.554118 TCACAAAAATGGGAAACAAATTTGCTA 59.446 29.630 18.12 0.19 39.96 3.49
816 888 7.643371 CACAAAAATGGGAAACAAATTTGCTAC 59.357 33.333 18.12 6.33 39.96 3.58
817 889 7.337942 ACAAAAATGGGAAACAAATTTGCTACA 59.662 29.630 18.12 10.41 39.96 2.74
818 890 7.495135 AAAATGGGAAACAAATTTGCTACAG 57.505 32.000 18.12 0.00 36.45 2.74
819 891 6.418057 AATGGGAAACAAATTTGCTACAGA 57.582 33.333 18.12 0.00 36.45 3.41
820 892 5.452078 TGGGAAACAAATTTGCTACAGAG 57.548 39.130 18.12 0.00 36.45 3.35
821 893 4.280677 TGGGAAACAAATTTGCTACAGAGG 59.719 41.667 18.12 0.00 36.45 3.69
822 894 4.522789 GGGAAACAAATTTGCTACAGAGGA 59.477 41.667 18.12 0.00 36.45 3.71
823 895 5.335976 GGGAAACAAATTTGCTACAGAGGAG 60.336 44.000 18.12 0.00 36.45 3.69
824 896 5.473504 GGAAACAAATTTGCTACAGAGGAGA 59.526 40.000 18.12 0.00 33.58 3.71
825 897 6.151817 GGAAACAAATTTGCTACAGAGGAGAT 59.848 38.462 18.12 0.00 33.58 2.75
826 898 7.309438 GGAAACAAATTTGCTACAGAGGAGATT 60.309 37.037 18.12 0.00 33.58 2.40
827 899 6.506500 ACAAATTTGCTACAGAGGAGATTG 57.493 37.500 18.12 0.00 29.67 2.67
828 900 5.105997 ACAAATTTGCTACAGAGGAGATTGC 60.106 40.000 18.12 0.00 29.67 3.56
829 901 3.701205 TTTGCTACAGAGGAGATTGCA 57.299 42.857 0.00 0.00 0.00 4.08
830 902 3.920231 TTGCTACAGAGGAGATTGCAT 57.080 42.857 0.00 0.00 0.00 3.96
831 903 3.465742 TGCTACAGAGGAGATTGCATC 57.534 47.619 0.00 0.00 0.00 3.91
832 904 2.767960 TGCTACAGAGGAGATTGCATCA 59.232 45.455 0.00 0.00 0.00 3.07
833 905 3.198417 TGCTACAGAGGAGATTGCATCAA 59.802 43.478 0.00 0.00 0.00 2.57
834 906 4.194640 GCTACAGAGGAGATTGCATCAAA 58.805 43.478 0.00 0.00 0.00 2.69
835 907 4.637534 GCTACAGAGGAGATTGCATCAAAA 59.362 41.667 0.00 0.00 0.00 2.44
836 908 5.124457 GCTACAGAGGAGATTGCATCAAAAA 59.876 40.000 0.00 0.00 0.00 1.94
856 928 1.331214 ACAAATTGGTGCAGTGGAGG 58.669 50.000 0.00 0.00 0.00 4.30
863 935 1.376037 GTGCAGTGGAGGGCTACAC 60.376 63.158 0.00 0.00 44.70 2.90
1303 1389 4.638421 ACGTGAGAAGATTACCTCTCTCTG 59.362 45.833 0.00 0.00 33.17 3.35
1447 1841 6.928492 TGGCTGCTTAATTTTTCGAATTTTCT 59.072 30.769 0.00 0.00 0.00 2.52
1451 1845 7.571892 TGCTTAATTTTTCGAATTTTCTTGCC 58.428 30.769 0.00 0.00 0.00 4.52
1458 1858 2.158841 TCGAATTTTCTTGCCGTAGTGC 59.841 45.455 0.00 0.00 0.00 4.40
1466 1866 1.806542 CTTGCCGTAGTGCAGTTGAAT 59.193 47.619 0.00 0.00 43.21 2.57
1472 1872 2.416547 CGTAGTGCAGTTGAATTCCCTG 59.583 50.000 14.71 14.71 0.00 4.45
1489 1889 1.494721 CCTGTGGGCTATGGTGGTAAT 59.505 52.381 0.00 0.00 0.00 1.89
1639 2286 4.611782 CGCTACTCGGTAAACAAGATATCG 59.388 45.833 0.00 0.00 33.78 2.92
1664 2312 4.096984 GCTGGATGGAGACCTATTTTGTTG 59.903 45.833 0.00 0.00 0.00 3.33
1666 2318 5.886609 TGGATGGAGACCTATTTTGTTGAA 58.113 37.500 0.00 0.00 0.00 2.69
2010 2677 4.748102 CAGACGGTTAGCAACTTTGTCTTA 59.252 41.667 13.48 0.00 36.74 2.10
2094 2787 1.445582 GGGCCGAGTACAAGTGACG 60.446 63.158 0.00 0.00 0.00 4.35
2268 2961 5.304686 TGAAACCTATTACCTATGGCTGG 57.695 43.478 0.00 0.00 0.00 4.85
2327 3027 1.964344 GCTTTCCCCATGCCCAATACA 60.964 52.381 0.00 0.00 0.00 2.29
2328 3028 1.756538 CTTTCCCCATGCCCAATACAC 59.243 52.381 0.00 0.00 0.00 2.90
2382 3082 1.248785 AACAGCCTGCATGCTTCTGG 61.249 55.000 26.12 20.07 40.32 3.86
2786 3584 9.844790 TCATATAACAGCTTTCTGAAAAACATG 57.155 29.630 4.18 0.00 42.95 3.21
2858 3673 2.444421 AGCTGATCTGCCAAGAAAAGG 58.556 47.619 19.74 0.00 35.59 3.11
3278 4101 5.391312 AACTTTGATAACAGGCAATCACC 57.609 39.130 0.00 0.00 31.99 4.02
3383 4206 6.393171 CCAGAAGAAAATCCACAAGAAATCC 58.607 40.000 0.00 0.00 0.00 3.01
3495 4327 6.106648 TGGCAAATTTTGTATGGTCATTGA 57.893 33.333 10.65 0.00 0.00 2.57
3536 4368 6.546034 AGGGAGAAATATTGTTATTCCGGTTG 59.454 38.462 0.00 0.00 0.00 3.77
3550 4384 2.277084 CCGGTTGCTACTGGTTATGAC 58.723 52.381 17.06 0.00 44.50 3.06
3551 4385 1.924524 CGGTTGCTACTGGTTATGACG 59.075 52.381 0.00 0.00 0.00 4.35
3567 4407 1.270785 TGACGAAGAAGCTGAATGCCA 60.271 47.619 0.00 0.00 44.23 4.92
3682 4532 6.660521 ACCAAAGATATTTGATGTCTGAGCAA 59.339 34.615 14.30 0.00 33.95 3.91
3772 4645 5.239525 ACCGTGAACCCTATACGAATAGTAC 59.760 44.000 0.00 0.00 40.01 2.73
3912 4788 8.692710 ACCGAGTCTCAACAGATGTTATATTTA 58.307 33.333 0.00 0.00 36.32 1.40
3989 4881 3.006112 AGTCTCAGAGATCTAACCGCA 57.994 47.619 2.64 0.00 0.00 5.69
4076 4968 7.012327 TGCTGCTACTAATCATTCATTACAACC 59.988 37.037 0.00 0.00 0.00 3.77
4109 5001 6.248433 AGAAAGCCATTTGATCTAGAACCAA 58.752 36.000 0.00 1.50 0.00 3.67
4159 5051 4.334759 CCAATTCATCTAGCACCACTTCAG 59.665 45.833 0.00 0.00 0.00 3.02
4213 5105 6.070251 TCACAATACCATCACACTTACCATCT 60.070 38.462 0.00 0.00 0.00 2.90
4219 5111 2.540383 TCACACTTACCATCTCCAGCT 58.460 47.619 0.00 0.00 0.00 4.24
4220 5112 2.906389 TCACACTTACCATCTCCAGCTT 59.094 45.455 0.00 0.00 0.00 3.74
4221 5113 3.055819 TCACACTTACCATCTCCAGCTTC 60.056 47.826 0.00 0.00 0.00 3.86
4222 5114 2.906389 ACACTTACCATCTCCAGCTTCA 59.094 45.455 0.00 0.00 0.00 3.02
4223 5115 3.055530 ACACTTACCATCTCCAGCTTCAG 60.056 47.826 0.00 0.00 0.00 3.02
4224 5116 2.093235 ACTTACCATCTCCAGCTTCAGC 60.093 50.000 0.00 0.00 42.49 4.26
4225 5117 1.571955 TACCATCTCCAGCTTCAGCA 58.428 50.000 0.75 0.00 45.16 4.41
4226 5118 0.035630 ACCATCTCCAGCTTCAGCAC 60.036 55.000 0.75 0.00 45.16 4.40
4227 5119 1.088340 CCATCTCCAGCTTCAGCACG 61.088 60.000 0.75 0.00 45.16 5.34
4243 5135 5.164233 TCAGCACGAACAGAATTTCTCTAG 58.836 41.667 0.00 0.00 31.12 2.43
4262 5154 6.151985 TCTCTAGCTAATCCAACTAGCATAGC 59.848 42.308 0.00 0.00 44.39 2.97
4293 5185 5.497474 TGTTTGGTAGCTAAATTCCTCTCC 58.503 41.667 0.00 0.00 0.00 3.71
4294 5186 5.250774 TGTTTGGTAGCTAAATTCCTCTCCT 59.749 40.000 0.00 0.00 0.00 3.69
4295 5187 6.181190 GTTTGGTAGCTAAATTCCTCTCCTT 58.819 40.000 0.00 0.00 0.00 3.36
4296 5188 7.037873 TGTTTGGTAGCTAAATTCCTCTCCTTA 60.038 37.037 0.00 0.00 0.00 2.69
4297 5189 6.481434 TGGTAGCTAAATTCCTCTCCTTAC 57.519 41.667 0.00 0.00 0.00 2.34
4298 5190 5.962031 TGGTAGCTAAATTCCTCTCCTTACA 59.038 40.000 0.00 0.00 0.00 2.41
4299 5191 6.098409 TGGTAGCTAAATTCCTCTCCTTACAG 59.902 42.308 0.00 0.00 0.00 2.74
4300 5192 6.098552 GGTAGCTAAATTCCTCTCCTTACAGT 59.901 42.308 0.00 0.00 0.00 3.55
4301 5193 5.983540 AGCTAAATTCCTCTCCTTACAGTG 58.016 41.667 0.00 0.00 0.00 3.66
4302 5194 4.572795 GCTAAATTCCTCTCCTTACAGTGC 59.427 45.833 0.00 0.00 0.00 4.40
4303 5195 3.636153 AATTCCTCTCCTTACAGTGCC 57.364 47.619 0.00 0.00 0.00 5.01
4304 5196 2.327325 TTCCTCTCCTTACAGTGCCT 57.673 50.000 0.00 0.00 0.00 4.75
4305 5197 1.853963 TCCTCTCCTTACAGTGCCTC 58.146 55.000 0.00 0.00 0.00 4.70
4306 5198 1.359474 TCCTCTCCTTACAGTGCCTCT 59.641 52.381 0.00 0.00 0.00 3.69
4307 5199 2.581246 TCCTCTCCTTACAGTGCCTCTA 59.419 50.000 0.00 0.00 0.00 2.43
4308 5200 2.691011 CCTCTCCTTACAGTGCCTCTAC 59.309 54.545 0.00 0.00 0.00 2.59
4309 5201 2.691011 CTCTCCTTACAGTGCCTCTACC 59.309 54.545 0.00 0.00 0.00 3.18
4310 5202 2.312140 TCTCCTTACAGTGCCTCTACCT 59.688 50.000 0.00 0.00 0.00 3.08
4311 5203 2.428890 CTCCTTACAGTGCCTCTACCTG 59.571 54.545 0.00 0.00 0.00 4.00
4312 5204 1.134670 CCTTACAGTGCCTCTACCTGC 60.135 57.143 0.00 0.00 0.00 4.85
4313 5205 1.550524 CTTACAGTGCCTCTACCTGCA 59.449 52.381 0.00 0.00 34.54 4.41
4314 5206 1.639722 TACAGTGCCTCTACCTGCAA 58.360 50.000 0.00 0.00 39.57 4.08
4315 5207 0.987294 ACAGTGCCTCTACCTGCAAT 59.013 50.000 0.00 0.00 39.57 3.56
4316 5208 1.376543 CAGTGCCTCTACCTGCAATG 58.623 55.000 0.00 0.00 45.40 2.82
4317 5209 0.393537 AGTGCCTCTACCTGCAATGC 60.394 55.000 0.00 0.00 39.57 3.56
4318 5210 1.077501 TGCCTCTACCTGCAATGCC 60.078 57.895 1.53 0.00 33.87 4.40
4319 5211 1.225704 GCCTCTACCTGCAATGCCT 59.774 57.895 1.53 0.00 0.00 4.75
4320 5212 0.817229 GCCTCTACCTGCAATGCCTC 60.817 60.000 1.53 0.00 0.00 4.70
4321 5213 0.179034 CCTCTACCTGCAATGCCTCC 60.179 60.000 1.53 0.00 0.00 4.30
4322 5214 0.835941 CTCTACCTGCAATGCCTCCT 59.164 55.000 1.53 0.00 0.00 3.69
4323 5215 1.211457 CTCTACCTGCAATGCCTCCTT 59.789 52.381 1.53 0.00 0.00 3.36
4324 5216 1.210478 TCTACCTGCAATGCCTCCTTC 59.790 52.381 1.53 0.00 0.00 3.46
4325 5217 0.255890 TACCTGCAATGCCTCCTTCC 59.744 55.000 1.53 0.00 0.00 3.46
4326 5218 1.000521 CCTGCAATGCCTCCTTCCA 60.001 57.895 1.53 0.00 0.00 3.53
4327 5219 0.612732 CCTGCAATGCCTCCTTCCAA 60.613 55.000 1.53 0.00 0.00 3.53
4328 5220 1.259609 CTGCAATGCCTCCTTCCAAA 58.740 50.000 1.53 0.00 0.00 3.28
4329 5221 0.968405 TGCAATGCCTCCTTCCAAAC 59.032 50.000 1.53 0.00 0.00 2.93
4330 5222 0.968405 GCAATGCCTCCTTCCAAACA 59.032 50.000 0.00 0.00 0.00 2.83
4331 5223 1.337167 GCAATGCCTCCTTCCAAACAC 60.337 52.381 0.00 0.00 0.00 3.32
4332 5224 2.242043 CAATGCCTCCTTCCAAACACT 58.758 47.619 0.00 0.00 0.00 3.55
4333 5225 2.629617 CAATGCCTCCTTCCAAACACTT 59.370 45.455 0.00 0.00 0.00 3.16
4334 5226 1.981256 TGCCTCCTTCCAAACACTTC 58.019 50.000 0.00 0.00 0.00 3.01
4335 5227 1.248486 GCCTCCTTCCAAACACTTCC 58.752 55.000 0.00 0.00 0.00 3.46
4336 5228 1.478654 GCCTCCTTCCAAACACTTCCA 60.479 52.381 0.00 0.00 0.00 3.53
4337 5229 2.819348 GCCTCCTTCCAAACACTTCCAT 60.819 50.000 0.00 0.00 0.00 3.41
4338 5230 3.500343 CCTCCTTCCAAACACTTCCATT 58.500 45.455 0.00 0.00 0.00 3.16
4339 5231 3.897505 CCTCCTTCCAAACACTTCCATTT 59.102 43.478 0.00 0.00 0.00 2.32
4340 5232 4.344968 CCTCCTTCCAAACACTTCCATTTT 59.655 41.667 0.00 0.00 0.00 1.82
4341 5233 5.275067 TCCTTCCAAACACTTCCATTTTG 57.725 39.130 0.00 0.00 0.00 2.44
4342 5234 4.714308 TCCTTCCAAACACTTCCATTTTGT 59.286 37.500 0.00 0.00 0.00 2.83
4343 5235 5.049828 CCTTCCAAACACTTCCATTTTGTC 58.950 41.667 0.00 0.00 0.00 3.18
4344 5236 4.664150 TCCAAACACTTCCATTTTGTCC 57.336 40.909 0.00 0.00 0.00 4.02
4345 5237 4.285863 TCCAAACACTTCCATTTTGTCCT 58.714 39.130 0.00 0.00 0.00 3.85
4346 5238 4.340950 TCCAAACACTTCCATTTTGTCCTC 59.659 41.667 0.00 0.00 0.00 3.71
4347 5239 4.342092 CCAAACACTTCCATTTTGTCCTCT 59.658 41.667 0.00 0.00 0.00 3.69
4348 5240 5.163416 CCAAACACTTCCATTTTGTCCTCTT 60.163 40.000 0.00 0.00 0.00 2.85
4349 5241 5.774498 AACACTTCCATTTTGTCCTCTTC 57.226 39.130 0.00 0.00 0.00 2.87
4350 5242 5.053978 ACACTTCCATTTTGTCCTCTTCT 57.946 39.130 0.00 0.00 0.00 2.85
4351 5243 4.823989 ACACTTCCATTTTGTCCTCTTCTG 59.176 41.667 0.00 0.00 0.00 3.02
4352 5244 3.823304 ACTTCCATTTTGTCCTCTTCTGC 59.177 43.478 0.00 0.00 0.00 4.26
4353 5245 3.507162 TCCATTTTGTCCTCTTCTGCA 57.493 42.857 0.00 0.00 0.00 4.41
4354 5246 3.149196 TCCATTTTGTCCTCTTCTGCAC 58.851 45.455 0.00 0.00 0.00 4.57
4355 5247 2.229784 CCATTTTGTCCTCTTCTGCACC 59.770 50.000 0.00 0.00 0.00 5.01
4356 5248 2.727123 TTTTGTCCTCTTCTGCACCA 57.273 45.000 0.00 0.00 0.00 4.17
4357 5249 2.727123 TTTGTCCTCTTCTGCACCAA 57.273 45.000 0.00 0.00 0.00 3.67
4358 5250 2.957402 TTGTCCTCTTCTGCACCAAT 57.043 45.000 0.00 0.00 0.00 3.16
4359 5251 2.957402 TGTCCTCTTCTGCACCAATT 57.043 45.000 0.00 0.00 0.00 2.32
4360 5252 2.507484 TGTCCTCTTCTGCACCAATTG 58.493 47.619 0.00 0.00 0.00 2.32
4370 5262 3.429043 CACCAATTGCATCCACAGC 57.571 52.632 0.00 0.00 0.00 4.40
4371 5263 0.604073 CACCAATTGCATCCACAGCA 59.396 50.000 0.00 0.00 40.85 4.41
4372 5264 0.892755 ACCAATTGCATCCACAGCAG 59.107 50.000 0.00 0.00 43.75 4.24
4373 5265 0.459585 CCAATTGCATCCACAGCAGC 60.460 55.000 0.00 0.00 43.75 5.25
4374 5266 0.245266 CAATTGCATCCACAGCAGCA 59.755 50.000 0.00 0.00 43.75 4.41
4375 5267 0.530744 AATTGCATCCACAGCAGCAG 59.469 50.000 0.00 0.00 43.75 4.24
4376 5268 1.945354 ATTGCATCCACAGCAGCAGC 61.945 55.000 0.00 0.00 43.75 5.25
4377 5269 3.060000 GCATCCACAGCAGCAGCA 61.060 61.111 3.17 0.00 45.49 4.41
4378 5270 2.875485 CATCCACAGCAGCAGCAC 59.125 61.111 3.17 0.00 45.49 4.40
4379 5271 1.969589 CATCCACAGCAGCAGCACA 60.970 57.895 3.17 0.00 45.49 4.57
4380 5272 1.228337 ATCCACAGCAGCAGCACAA 60.228 52.632 3.17 0.00 45.49 3.33
4381 5273 0.824595 ATCCACAGCAGCAGCACAAA 60.825 50.000 3.17 0.00 45.49 2.83
4382 5274 1.299620 CCACAGCAGCAGCACAAAC 60.300 57.895 3.17 0.00 45.49 2.93
4383 5275 1.434287 CACAGCAGCAGCACAAACA 59.566 52.632 3.17 0.00 45.49 2.83
4384 5276 0.594028 CACAGCAGCAGCACAAACAG 60.594 55.000 3.17 0.00 45.49 3.16
4385 5277 0.749091 ACAGCAGCAGCACAAACAGA 60.749 50.000 3.17 0.00 45.49 3.41
4386 5278 0.596577 CAGCAGCAGCACAAACAGAT 59.403 50.000 3.17 0.00 45.49 2.90
4387 5279 0.596577 AGCAGCAGCACAAACAGATG 59.403 50.000 3.17 0.00 45.49 2.90
4388 5280 1.007336 GCAGCAGCACAAACAGATGC 61.007 55.000 0.00 0.00 42.39 3.91
4393 5285 3.780925 GCACAAACAGATGCTCCAC 57.219 52.632 0.00 0.00 38.84 4.02
4394 5286 0.953727 GCACAAACAGATGCTCCACA 59.046 50.000 0.00 0.00 38.84 4.17
4395 5287 1.542915 GCACAAACAGATGCTCCACAT 59.457 47.619 0.00 0.00 43.54 3.21
4396 5288 2.749076 GCACAAACAGATGCTCCACATA 59.251 45.455 0.00 0.00 39.84 2.29
4397 5289 3.426695 GCACAAACAGATGCTCCACATAC 60.427 47.826 0.00 0.00 39.84 2.39
4398 5290 4.005650 CACAAACAGATGCTCCACATACT 58.994 43.478 0.00 0.00 39.84 2.12
4399 5291 4.093998 CACAAACAGATGCTCCACATACTC 59.906 45.833 0.00 0.00 39.84 2.59
4400 5292 4.019860 ACAAACAGATGCTCCACATACTCT 60.020 41.667 0.00 0.00 39.84 3.24
4401 5293 4.833478 AACAGATGCTCCACATACTCTT 57.167 40.909 0.00 0.00 39.84 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 145 2.032675 GCTTCGGCATCCATCTCTTTTC 59.967 50.000 0.00 0.00 41.33 2.29
148 150 1.599240 GGGCTTCGGCATCCATCTC 60.599 63.158 0.00 0.00 43.96 2.75
158 160 3.869065 TCAAAAGTACATAGGGCTTCGG 58.131 45.455 0.00 0.00 0.00 4.30
160 162 5.497474 TCCTTCAAAAGTACATAGGGCTTC 58.503 41.667 0.00 0.00 0.00 3.86
212 215 4.347292 CCATGGAGATCTCATCTTCTGGAA 59.653 45.833 23.85 0.00 40.38 3.53
214 217 3.557475 GCCATGGAGATCTCATCTTCTGG 60.557 52.174 23.85 18.42 40.38 3.86
216 219 2.638855 GGCCATGGAGATCTCATCTTCT 59.361 50.000 23.85 0.00 40.38 2.85
219 222 1.979308 CAGGCCATGGAGATCTCATCT 59.021 52.381 23.85 8.57 43.70 2.90
232 235 2.215451 ATTTCGTGGAGCCAGGCCAT 62.215 55.000 8.22 0.00 37.81 4.40
235 238 0.678048 AGAATTTCGTGGAGCCAGGC 60.678 55.000 1.84 1.84 0.00 4.85
252 255 8.098220 TCACGAATTGAATTTCAGATTTGAGA 57.902 30.769 18.40 15.27 34.15 3.27
253 256 8.906636 ATCACGAATTGAATTTCAGATTTGAG 57.093 30.769 18.40 14.05 37.92 3.02
282 285 0.393944 ACGATCTCAGGCGTGGAGTA 60.394 55.000 6.56 0.00 39.56 2.59
290 293 1.081774 CGGATCGACGATCTCAGGC 60.082 63.158 30.89 16.64 38.91 4.85
308 311 2.799540 CGCTTTCCGGCTAGTTCGC 61.800 63.158 0.00 0.00 0.00 4.70
330 333 1.669115 CTCACGGTTGTGGAGCCAG 60.669 63.158 0.00 0.00 46.42 4.85
354 357 1.134401 TCTCAGCGGGGATTGTTCATC 60.134 52.381 0.00 0.00 0.00 2.92
368 371 2.270527 GGAGTTGGCCCTCTCAGC 59.729 66.667 20.71 5.93 32.93 4.26
369 372 2.581354 CGGAGTTGGCCCTCTCAG 59.419 66.667 20.71 15.15 32.93 3.35
373 376 3.056328 GTTGCGGAGTTGGCCCTC 61.056 66.667 0.00 0.00 0.00 4.30
387 390 4.430423 GACTCTTGCGCCGCGTTG 62.430 66.667 15.34 5.13 0.00 4.10
391 394 3.843240 CTTCGACTCTTGCGCCGC 61.843 66.667 4.18 0.00 0.00 6.53
392 395 2.126463 TCTTCGACTCTTGCGCCG 60.126 61.111 4.18 0.00 0.00 6.46
393 396 2.437343 CGTCTTCGACTCTTGCGCC 61.437 63.158 4.18 0.00 39.71 6.53
394 397 1.442184 TCGTCTTCGACTCTTGCGC 60.442 57.895 0.00 0.00 41.35 6.09
395 398 4.841029 TCGTCTTCGACTCTTGCG 57.159 55.556 0.00 0.00 41.35 4.85
405 408 1.014044 TTGTGGCGCTCATCGTCTTC 61.014 55.000 7.64 0.00 44.46 2.87
406 409 0.602638 TTTGTGGCGCTCATCGTCTT 60.603 50.000 7.64 0.00 44.46 3.01
408 411 1.014044 TCTTTGTGGCGCTCATCGTC 61.014 55.000 7.64 0.00 44.40 4.20
409 412 1.005037 TCTTTGTGGCGCTCATCGT 60.005 52.632 7.64 0.00 41.07 3.73
411 414 1.442769 TTCTCTTTGTGGCGCTCATC 58.557 50.000 7.64 0.00 0.00 2.92
413 416 2.760634 TATTCTCTTTGTGGCGCTCA 57.239 45.000 7.64 4.33 0.00 4.26
414 417 5.233988 AGATATATTCTCTTTGTGGCGCTC 58.766 41.667 7.64 1.21 0.00 5.03
415 418 5.220710 AGATATATTCTCTTTGTGGCGCT 57.779 39.130 7.64 0.00 0.00 5.92
416 419 5.523013 GAGATATATTCTCTTTGTGGCGC 57.477 43.478 0.00 0.00 46.33 6.53
426 429 4.882427 TGATCCCGGACGAGATATATTCTC 59.118 45.833 0.73 5.37 46.36 2.87
428 431 4.882427 TCTGATCCCGGACGAGATATATTC 59.118 45.833 0.73 0.00 0.00 1.75
430 433 4.505324 TCTGATCCCGGACGAGATATAT 57.495 45.455 0.73 0.00 0.00 0.86
431 434 3.994931 TCTGATCCCGGACGAGATATA 57.005 47.619 0.73 0.00 0.00 0.86
433 436 2.651382 TTCTGATCCCGGACGAGATA 57.349 50.000 0.73 0.00 0.00 1.98
435 438 2.651382 TATTCTGATCCCGGACGAGA 57.349 50.000 0.73 0.00 0.00 4.04
436 439 4.011023 ACTATATTCTGATCCCGGACGAG 58.989 47.826 0.73 0.00 0.00 4.18
438 441 3.673594 GCACTATATTCTGATCCCGGACG 60.674 52.174 0.73 0.00 0.00 4.79
439 442 3.258372 TGCACTATATTCTGATCCCGGAC 59.742 47.826 0.73 0.00 0.00 4.79
440 443 3.506398 TGCACTATATTCTGATCCCGGA 58.494 45.455 0.73 0.00 0.00 5.14
442 445 4.527509 ACTGCACTATATTCTGATCCCG 57.472 45.455 0.00 0.00 0.00 5.14
443 446 6.203723 GTCAAACTGCACTATATTCTGATCCC 59.796 42.308 0.00 0.00 0.00 3.85
444 447 6.989169 AGTCAAACTGCACTATATTCTGATCC 59.011 38.462 0.00 0.00 0.00 3.36
445 448 7.170658 GGAGTCAAACTGCACTATATTCTGATC 59.829 40.741 0.00 0.00 36.49 2.92
446 449 6.989169 GGAGTCAAACTGCACTATATTCTGAT 59.011 38.462 0.00 0.00 36.49 2.90
447 450 6.155221 AGGAGTCAAACTGCACTATATTCTGA 59.845 38.462 1.44 0.00 39.19 3.27
448 451 6.344500 AGGAGTCAAACTGCACTATATTCTG 58.656 40.000 1.44 0.00 39.19 3.02
449 452 6.155221 TGAGGAGTCAAACTGCACTATATTCT 59.845 38.462 1.44 0.00 39.19 2.40
450 453 6.341316 TGAGGAGTCAAACTGCACTATATTC 58.659 40.000 1.44 0.00 39.19 1.75
453 456 5.187772 ACATGAGGAGTCAAACTGCACTATA 59.812 40.000 0.00 0.00 39.19 1.31
455 458 3.324846 ACATGAGGAGTCAAACTGCACTA 59.675 43.478 0.00 0.00 39.19 2.74
456 459 2.105477 ACATGAGGAGTCAAACTGCACT 59.895 45.455 0.00 0.00 39.19 4.40
457 460 2.498167 ACATGAGGAGTCAAACTGCAC 58.502 47.619 0.00 0.00 39.19 4.57
458 461 2.936919 ACATGAGGAGTCAAACTGCA 57.063 45.000 0.00 0.00 39.19 4.41
459 462 3.854784 GCAAACATGAGGAGTCAAACTGC 60.855 47.826 0.00 0.00 35.88 4.40
460 463 3.607775 CGCAAACATGAGGAGTCAAACTG 60.608 47.826 0.00 0.00 35.88 3.16
461 464 2.549754 CGCAAACATGAGGAGTCAAACT 59.450 45.455 0.00 0.00 35.88 2.66
462 465 2.350772 CCGCAAACATGAGGAGTCAAAC 60.351 50.000 0.00 0.00 35.88 2.93
463 466 1.879380 CCGCAAACATGAGGAGTCAAA 59.121 47.619 0.00 0.00 35.88 2.69
465 468 0.396435 ACCGCAAACATGAGGAGTCA 59.604 50.000 0.00 0.00 37.02 3.41
466 469 1.523758 AACCGCAAACATGAGGAGTC 58.476 50.000 0.00 0.00 32.87 3.36
468 471 1.737793 GGTAACCGCAAACATGAGGAG 59.262 52.381 0.00 0.00 32.87 3.69
469 472 1.349688 AGGTAACCGCAAACATGAGGA 59.650 47.619 0.00 0.00 32.87 3.71
470 473 1.821216 AGGTAACCGCAAACATGAGG 58.179 50.000 0.00 0.00 34.81 3.86
471 474 3.915437 AAAGGTAACCGCAAACATGAG 57.085 42.857 0.00 0.00 37.17 2.90
473 476 6.642950 TCAAATAAAAGGTAACCGCAAACATG 59.357 34.615 0.00 0.00 37.17 3.21
475 478 5.978322 GTCAAATAAAAGGTAACCGCAAACA 59.022 36.000 0.00 0.00 37.17 2.83
476 479 5.403166 GGTCAAATAAAAGGTAACCGCAAAC 59.597 40.000 0.00 0.00 37.17 2.93
477 480 5.302313 AGGTCAAATAAAAGGTAACCGCAAA 59.698 36.000 0.00 0.00 37.17 3.68
479 482 4.400120 AGGTCAAATAAAAGGTAACCGCA 58.600 39.130 0.00 0.00 37.17 5.69
481 484 5.474189 TCCAAGGTCAAATAAAAGGTAACCG 59.526 40.000 0.00 0.00 37.17 4.44
483 486 6.205270 TCGTCCAAGGTCAAATAAAAGGTAAC 59.795 38.462 0.00 0.00 0.00 2.50
484 487 6.297582 TCGTCCAAGGTCAAATAAAAGGTAA 58.702 36.000 0.00 0.00 0.00 2.85
485 488 5.867330 TCGTCCAAGGTCAAATAAAAGGTA 58.133 37.500 0.00 0.00 0.00 3.08
502 505 5.416083 CCATGTATGAAACTAGTTCGTCCA 58.584 41.667 8.95 5.60 39.30 4.02
503 506 4.270325 GCCATGTATGAAACTAGTTCGTCC 59.730 45.833 8.95 0.00 39.30 4.79
507 516 6.494893 TTGTGCCATGTATGAAACTAGTTC 57.505 37.500 8.95 3.51 36.70 3.01
535 544 9.268268 CTCCTATGTGTAAACTAAACAAGACAA 57.732 33.333 0.00 0.00 0.00 3.18
715 786 9.482627 CCCATCTACTGATATAGACTGAAAAAC 57.517 37.037 0.00 0.00 34.02 2.43
721 792 8.415950 AAGAACCCATCTACTGATATAGACTG 57.584 38.462 0.00 0.00 37.42 3.51
729 800 5.488919 TCCTTTGAAGAACCCATCTACTGAT 59.511 40.000 0.00 0.00 37.42 2.90
734 805 6.490040 CACTTTTCCTTTGAAGAACCCATCTA 59.510 38.462 0.00 0.00 37.42 1.98
736 807 5.509670 CCACTTTTCCTTTGAAGAACCCATC 60.510 44.000 0.00 0.00 0.00 3.51
742 813 3.384467 CCAGCCACTTTTCCTTTGAAGAA 59.616 43.478 0.00 0.00 0.00 2.52
744 815 2.958355 TCCAGCCACTTTTCCTTTGAAG 59.042 45.455 0.00 0.00 0.00 3.02
757 828 2.507407 TCCCTTATGTTTCCAGCCAC 57.493 50.000 0.00 0.00 0.00 5.01
758 829 3.534357 TTTCCCTTATGTTTCCAGCCA 57.466 42.857 0.00 0.00 0.00 4.75
761 832 5.183904 CCTCTGTTTTCCCTTATGTTTCCAG 59.816 44.000 0.00 0.00 0.00 3.86
764 835 6.894339 TTCCTCTGTTTTCCCTTATGTTTC 57.106 37.500 0.00 0.00 0.00 2.78
789 861 6.376581 AGCAAATTTGTTTCCCATTTTTGTGA 59.623 30.769 19.03 0.00 32.23 3.58
790 862 6.562518 AGCAAATTTGTTTCCCATTTTTGTG 58.437 32.000 19.03 0.00 32.23 3.33
791 863 6.772360 AGCAAATTTGTTTCCCATTTTTGT 57.228 29.167 19.03 0.00 32.23 2.83
792 864 7.701445 TGTAGCAAATTTGTTTCCCATTTTTG 58.299 30.769 19.03 0.00 32.53 2.44
793 865 7.772757 TCTGTAGCAAATTTGTTTCCCATTTTT 59.227 29.630 19.03 0.00 0.00 1.94
798 870 4.280677 CCTCTGTAGCAAATTTGTTTCCCA 59.719 41.667 19.03 9.90 0.00 4.37
799 871 4.522789 TCCTCTGTAGCAAATTTGTTTCCC 59.477 41.667 19.03 6.16 0.00 3.97
800 872 5.473504 TCTCCTCTGTAGCAAATTTGTTTCC 59.526 40.000 19.03 8.39 0.00 3.13
802 874 7.373493 CAATCTCCTCTGTAGCAAATTTGTTT 58.627 34.615 19.03 10.60 0.00 2.83
804 876 5.105997 GCAATCTCCTCTGTAGCAAATTTGT 60.106 40.000 19.03 8.88 0.00 2.83
805 877 5.106038 TGCAATCTCCTCTGTAGCAAATTTG 60.106 40.000 14.03 14.03 0.00 2.32
806 878 5.012239 TGCAATCTCCTCTGTAGCAAATTT 58.988 37.500 0.00 0.00 0.00 1.82
807 879 4.592942 TGCAATCTCCTCTGTAGCAAATT 58.407 39.130 0.00 0.00 0.00 1.82
808 880 4.226427 TGCAATCTCCTCTGTAGCAAAT 57.774 40.909 0.00 0.00 0.00 2.32
809 881 3.701205 TGCAATCTCCTCTGTAGCAAA 57.299 42.857 0.00 0.00 0.00 3.68
812 884 3.465742 TGATGCAATCTCCTCTGTAGC 57.534 47.619 0.00 0.00 45.81 3.58
813 885 6.748333 TTTTTGATGCAATCTCCTCTGTAG 57.252 37.500 0.00 0.00 45.81 2.74
833 905 4.190772 CTCCACTGCACCAATTTGTTTTT 58.809 39.130 0.00 0.00 0.00 1.94
834 906 3.432046 CCTCCACTGCACCAATTTGTTTT 60.432 43.478 0.00 0.00 0.00 2.43
835 907 2.102925 CCTCCACTGCACCAATTTGTTT 59.897 45.455 0.00 0.00 0.00 2.83
836 908 1.688197 CCTCCACTGCACCAATTTGTT 59.312 47.619 0.00 0.00 0.00 2.83
837 909 1.331214 CCTCCACTGCACCAATTTGT 58.669 50.000 0.00 0.00 0.00 2.83
838 910 0.604578 CCCTCCACTGCACCAATTTG 59.395 55.000 0.00 0.00 0.00 2.32
839 911 1.187567 GCCCTCCACTGCACCAATTT 61.188 55.000 0.00 0.00 0.00 1.82
840 912 1.607467 GCCCTCCACTGCACCAATT 60.607 57.895 0.00 0.00 0.00 2.32
841 913 1.207488 TAGCCCTCCACTGCACCAAT 61.207 55.000 0.00 0.00 0.00 3.16
845 917 1.376037 GTGTAGCCCTCCACTGCAC 60.376 63.158 0.00 0.00 42.22 4.57
847 919 2.125512 CGTGTAGCCCTCCACTGC 60.126 66.667 0.00 0.00 0.00 4.40
851 923 2.731571 GCATCCGTGTAGCCCTCCA 61.732 63.158 0.00 0.00 0.00 3.86
1311 1402 1.604185 GCACCGAGCAGAGATGGTATC 60.604 57.143 0.00 0.00 44.79 2.24
1447 1841 1.890876 ATTCAACTGCACTACGGCAA 58.109 45.000 0.00 0.00 44.40 4.52
1451 1845 2.416547 CAGGGAATTCAACTGCACTACG 59.583 50.000 14.09 0.00 0.00 3.51
1472 1872 2.100749 GCAAATTACCACCATAGCCCAC 59.899 50.000 0.00 0.00 0.00 4.61
1577 2222 9.481340 GAAAAACTAGAATCCAAGCAAAGAATT 57.519 29.630 0.00 0.00 0.00 2.17
1587 2233 8.181904 AGCAAGAATGAAAAACTAGAATCCAA 57.818 30.769 0.00 0.00 0.00 3.53
1639 2286 4.133078 CAAAATAGGTCTCCATCCAGCTC 58.867 47.826 0.00 0.00 0.00 4.09
1822 2487 3.059188 ACACAAAGTCCGAAGCAAATACG 60.059 43.478 0.00 0.00 0.00 3.06
1850 2515 5.840243 TGATAATCCCTGCAAGAATGTTG 57.160 39.130 0.00 0.00 34.07 3.33
1970 2636 4.155826 CCGTCTGTCAATTTGGCTTCAATA 59.844 41.667 2.24 0.00 0.00 1.90
2010 2677 3.457380 AGATTCACCAGCCATAGACACAT 59.543 43.478 0.00 0.00 0.00 3.21
2251 2944 4.974645 TTCACCAGCCATAGGTAATAGG 57.025 45.455 0.00 0.00 37.23 2.57
2252 2945 6.365970 AGATTCACCAGCCATAGGTAATAG 57.634 41.667 0.00 0.00 37.23 1.73
2253 2946 6.101150 ACAAGATTCACCAGCCATAGGTAATA 59.899 38.462 0.00 0.00 37.23 0.98
2254 2947 5.103940 ACAAGATTCACCAGCCATAGGTAAT 60.104 40.000 0.00 0.00 37.23 1.89
2255 2948 4.227300 ACAAGATTCACCAGCCATAGGTAA 59.773 41.667 0.00 0.00 37.23 2.85
2256 2949 3.780294 ACAAGATTCACCAGCCATAGGTA 59.220 43.478 0.00 0.00 37.23 3.08
2257 2950 2.578021 ACAAGATTCACCAGCCATAGGT 59.422 45.455 0.00 0.00 40.85 3.08
2294 2994 4.855340 TGGGGAAAGCTCGAAAAGATTAT 58.145 39.130 0.00 0.00 30.69 1.28
2327 3027 5.067805 TCACAGCTCATGATAACTACGATGT 59.932 40.000 0.00 0.00 0.00 3.06
2328 3028 5.400782 GTCACAGCTCATGATAACTACGATG 59.599 44.000 0.00 0.00 0.00 3.84
2554 3254 2.419297 GGATCAACACCAGGCTCTGTAG 60.419 54.545 0.00 0.00 0.00 2.74
2858 3673 5.105675 ACATTCTCGAGGTCTTCCTTCTTAC 60.106 44.000 13.56 0.00 45.24 2.34
2990 3806 4.853924 ACTAAAGGCAAACAGGTTCATG 57.146 40.909 0.00 0.00 0.00 3.07
3278 4101 4.641396 TGTCCTTCTTCACCTTGTACATG 58.359 43.478 0.00 0.00 0.00 3.21
3383 4206 3.814945 CACCTAAGCGCTTTTCTTTGAG 58.185 45.455 30.13 17.03 0.00 3.02
3447 4279 2.229784 CACTCCTTGATGCTTGGAAACC 59.770 50.000 0.00 0.00 0.00 3.27
3495 4327 2.375509 CTCCCTTGGGACTTAAACAGGT 59.624 50.000 3.91 0.00 0.00 4.00
3536 4368 3.552294 GCTTCTTCGTCATAACCAGTAGC 59.448 47.826 0.00 0.00 0.00 3.58
3550 4384 2.011947 TCATGGCATTCAGCTTCTTCG 58.988 47.619 0.00 0.00 44.79 3.79
3551 4385 3.630769 TCATCATGGCATTCAGCTTCTTC 59.369 43.478 0.00 0.00 44.79 2.87
3567 4407 4.655762 ACGTGTACAGCTATGTCATCAT 57.344 40.909 0.00 0.00 41.01 2.45
3665 4513 4.766373 TGGCTTTTGCTCAGACATCAAATA 59.234 37.500 0.00 0.00 46.54 1.40
3682 4532 9.740710 ACTTAACTCAGACTAAATTATGGCTTT 57.259 29.630 0.00 0.00 0.00 3.51
3716 4566 0.817654 GGGGTTGGCAAAGCATAGAC 59.182 55.000 0.00 0.00 35.41 2.59
3801 4677 8.441311 TTCATATAGGGTTGAGATCTAGCAAT 57.559 34.615 0.00 0.00 0.00 3.56
3881 4757 4.281182 ACATCTGTTGAGACTCGGTTAAGT 59.719 41.667 0.00 0.00 0.00 2.24
3882 4758 4.810790 ACATCTGTTGAGACTCGGTTAAG 58.189 43.478 0.00 0.00 0.00 1.85
3969 4861 3.006112 TGCGGTTAGATCTCTGAGACT 57.994 47.619 10.00 11.43 0.00 3.24
3970 4862 3.637432 CATGCGGTTAGATCTCTGAGAC 58.363 50.000 10.00 4.48 0.00 3.36
4001 4893 8.243289 GGTTTAACACCATGATTTTTCAGATG 57.757 34.615 0.00 0.00 46.42 2.90
4030 4922 4.397417 AGCAACTGGTTCTAGAATGATTGC 59.603 41.667 24.56 24.56 40.09 3.56
4076 4968 5.902613 TCAAATGGCTTTCTCTTGGTATG 57.097 39.130 0.00 0.00 0.00 2.39
4109 5001 2.679837 GGTGAAGTCGTGCATGATCAAT 59.320 45.455 12.67 0.00 0.00 2.57
4177 5069 3.879998 TGGTATTGTGAGTTGTGTGTGT 58.120 40.909 0.00 0.00 0.00 3.72
4178 5070 4.514816 TGATGGTATTGTGAGTTGTGTGTG 59.485 41.667 0.00 0.00 0.00 3.82
4179 5071 4.515191 GTGATGGTATTGTGAGTTGTGTGT 59.485 41.667 0.00 0.00 0.00 3.72
4180 5072 4.514816 TGTGATGGTATTGTGAGTTGTGTG 59.485 41.667 0.00 0.00 0.00 3.82
4181 5073 4.515191 GTGTGATGGTATTGTGAGTTGTGT 59.485 41.667 0.00 0.00 0.00 3.72
4182 5074 4.756642 AGTGTGATGGTATTGTGAGTTGTG 59.243 41.667 0.00 0.00 0.00 3.33
4183 5075 4.973168 AGTGTGATGGTATTGTGAGTTGT 58.027 39.130 0.00 0.00 0.00 3.32
4184 5076 5.947228 AAGTGTGATGGTATTGTGAGTTG 57.053 39.130 0.00 0.00 0.00 3.16
4185 5077 5.938125 GGTAAGTGTGATGGTATTGTGAGTT 59.062 40.000 0.00 0.00 0.00 3.01
4188 5080 5.491323 TGGTAAGTGTGATGGTATTGTGA 57.509 39.130 0.00 0.00 0.00 3.58
4194 5086 4.358214 TGGAGATGGTAAGTGTGATGGTA 58.642 43.478 0.00 0.00 0.00 3.25
4213 5105 0.601046 CTGTTCGTGCTGAAGCTGGA 60.601 55.000 3.61 0.00 42.66 3.86
4219 5111 4.380531 AGAGAAATTCTGTTCGTGCTGAA 58.619 39.130 0.00 4.55 33.93 3.02
4220 5112 3.995199 AGAGAAATTCTGTTCGTGCTGA 58.005 40.909 0.00 0.00 33.93 4.26
4221 5113 4.201666 GCTAGAGAAATTCTGTTCGTGCTG 60.202 45.833 0.00 0.00 36.61 4.41
4222 5114 3.929610 GCTAGAGAAATTCTGTTCGTGCT 59.070 43.478 0.00 0.00 36.61 4.40
4223 5115 3.929610 AGCTAGAGAAATTCTGTTCGTGC 59.070 43.478 0.00 0.17 36.61 5.34
4224 5116 7.043059 GGATTAGCTAGAGAAATTCTGTTCGTG 60.043 40.741 0.00 0.00 36.61 4.35
4225 5117 6.981559 GGATTAGCTAGAGAAATTCTGTTCGT 59.018 38.462 0.00 0.00 36.61 3.85
4226 5118 6.980978 TGGATTAGCTAGAGAAATTCTGTTCG 59.019 38.462 0.00 0.00 36.61 3.95
4227 5119 8.608317 GTTGGATTAGCTAGAGAAATTCTGTTC 58.392 37.037 0.00 0.00 36.61 3.18
4243 5135 3.434984 GCTGCTATGCTAGTTGGATTAGC 59.565 47.826 0.00 0.00 42.98 3.09
4272 5164 6.388619 AAGGAGAGGAATTTAGCTACCAAA 57.611 37.500 0.00 0.00 0.00 3.28
4293 5185 1.550524 TGCAGGTAGAGGCACTGTAAG 59.449 52.381 0.00 0.00 41.55 2.34
4294 5186 1.639722 TGCAGGTAGAGGCACTGTAA 58.360 50.000 0.00 0.00 41.55 2.41
4295 5187 1.639722 TTGCAGGTAGAGGCACTGTA 58.360 50.000 0.00 0.00 41.55 2.74
4296 5188 0.987294 ATTGCAGGTAGAGGCACTGT 59.013 50.000 0.00 0.00 41.55 3.55
4297 5189 1.376543 CATTGCAGGTAGAGGCACTG 58.623 55.000 0.00 0.00 41.55 3.66
4299 5191 1.379642 GGCATTGCAGGTAGAGGCAC 61.380 60.000 11.39 0.00 40.23 5.01
4300 5192 1.077501 GGCATTGCAGGTAGAGGCA 60.078 57.895 11.39 0.00 38.46 4.75
4301 5193 0.817229 GAGGCATTGCAGGTAGAGGC 60.817 60.000 11.39 0.00 0.00 4.70
4302 5194 0.179034 GGAGGCATTGCAGGTAGAGG 60.179 60.000 11.39 0.00 0.00 3.69
4303 5195 0.835941 AGGAGGCATTGCAGGTAGAG 59.164 55.000 11.39 0.00 0.00 2.43
4304 5196 1.210478 GAAGGAGGCATTGCAGGTAGA 59.790 52.381 11.39 0.00 0.00 2.59
4305 5197 1.673168 GAAGGAGGCATTGCAGGTAG 58.327 55.000 11.39 0.00 0.00 3.18
4306 5198 0.255890 GGAAGGAGGCATTGCAGGTA 59.744 55.000 11.39 0.00 0.00 3.08
4307 5199 1.000396 GGAAGGAGGCATTGCAGGT 60.000 57.895 11.39 0.00 0.00 4.00
4308 5200 0.612732 TTGGAAGGAGGCATTGCAGG 60.613 55.000 11.39 0.00 29.33 4.85
4309 5201 1.067354 GTTTGGAAGGAGGCATTGCAG 60.067 52.381 11.39 0.00 29.33 4.41
4310 5202 0.968405 GTTTGGAAGGAGGCATTGCA 59.032 50.000 11.39 0.00 0.00 4.08
4311 5203 0.968405 TGTTTGGAAGGAGGCATTGC 59.032 50.000 0.00 0.00 0.00 3.56
4312 5204 2.242043 AGTGTTTGGAAGGAGGCATTG 58.758 47.619 0.00 0.00 0.00 2.82
4313 5205 2.683211 AGTGTTTGGAAGGAGGCATT 57.317 45.000 0.00 0.00 0.00 3.56
4314 5206 2.519013 GAAGTGTTTGGAAGGAGGCAT 58.481 47.619 0.00 0.00 0.00 4.40
4315 5207 1.478654 GGAAGTGTTTGGAAGGAGGCA 60.479 52.381 0.00 0.00 0.00 4.75
4316 5208 1.248486 GGAAGTGTTTGGAAGGAGGC 58.752 55.000 0.00 0.00 0.00 4.70
4317 5209 2.656947 TGGAAGTGTTTGGAAGGAGG 57.343 50.000 0.00 0.00 0.00 4.30
4318 5210 5.163416 ACAAAATGGAAGTGTTTGGAAGGAG 60.163 40.000 0.00 0.00 36.72 3.69
4319 5211 4.714308 ACAAAATGGAAGTGTTTGGAAGGA 59.286 37.500 0.00 0.00 36.72 3.36
4320 5212 5.022282 ACAAAATGGAAGTGTTTGGAAGG 57.978 39.130 0.00 0.00 36.72 3.46
4321 5213 5.049828 GGACAAAATGGAAGTGTTTGGAAG 58.950 41.667 0.00 0.00 36.72 3.46
4322 5214 4.714308 AGGACAAAATGGAAGTGTTTGGAA 59.286 37.500 0.00 0.00 36.72 3.53
4323 5215 4.285863 AGGACAAAATGGAAGTGTTTGGA 58.714 39.130 0.00 0.00 36.72 3.53
4324 5216 4.342092 AGAGGACAAAATGGAAGTGTTTGG 59.658 41.667 0.00 0.00 36.72 3.28
4325 5217 5.520376 AGAGGACAAAATGGAAGTGTTTG 57.480 39.130 0.00 0.00 38.06 2.93
4326 5218 5.893824 AGAAGAGGACAAAATGGAAGTGTTT 59.106 36.000 0.00 0.00 0.00 2.83
4327 5219 5.300286 CAGAAGAGGACAAAATGGAAGTGTT 59.700 40.000 0.00 0.00 0.00 3.32
4328 5220 4.823989 CAGAAGAGGACAAAATGGAAGTGT 59.176 41.667 0.00 0.00 0.00 3.55
4329 5221 4.320788 GCAGAAGAGGACAAAATGGAAGTG 60.321 45.833 0.00 0.00 0.00 3.16
4330 5222 3.823304 GCAGAAGAGGACAAAATGGAAGT 59.177 43.478 0.00 0.00 0.00 3.01
4331 5223 3.822735 TGCAGAAGAGGACAAAATGGAAG 59.177 43.478 0.00 0.00 0.00 3.46
4332 5224 3.569701 GTGCAGAAGAGGACAAAATGGAA 59.430 43.478 0.00 0.00 0.00 3.53
4333 5225 3.149196 GTGCAGAAGAGGACAAAATGGA 58.851 45.455 0.00 0.00 0.00 3.41
4334 5226 2.229784 GGTGCAGAAGAGGACAAAATGG 59.770 50.000 0.00 0.00 0.00 3.16
4335 5227 2.886523 TGGTGCAGAAGAGGACAAAATG 59.113 45.455 0.00 0.00 0.00 2.32
4336 5228 3.228188 TGGTGCAGAAGAGGACAAAAT 57.772 42.857 0.00 0.00 0.00 1.82
4337 5229 2.727123 TGGTGCAGAAGAGGACAAAA 57.273 45.000 0.00 0.00 0.00 2.44
4338 5230 2.727123 TTGGTGCAGAAGAGGACAAA 57.273 45.000 0.00 0.00 0.00 2.83
4339 5231 2.886523 CAATTGGTGCAGAAGAGGACAA 59.113 45.455 0.00 0.00 0.00 3.18
4340 5232 2.507484 CAATTGGTGCAGAAGAGGACA 58.493 47.619 0.00 0.00 0.00 4.02
4352 5244 0.604073 TGCTGTGGATGCAATTGGTG 59.396 50.000 7.72 0.00 37.51 4.17
4353 5245 0.892755 CTGCTGTGGATGCAATTGGT 59.107 50.000 7.72 0.00 40.13 3.67
4354 5246 0.459585 GCTGCTGTGGATGCAATTGG 60.460 55.000 7.72 0.00 40.13 3.16
4355 5247 0.245266 TGCTGCTGTGGATGCAATTG 59.755 50.000 0.00 0.00 40.13 2.32
4356 5248 0.530744 CTGCTGCTGTGGATGCAATT 59.469 50.000 0.00 0.00 40.13 2.32
4357 5249 1.945354 GCTGCTGCTGTGGATGCAAT 61.945 55.000 8.53 0.00 40.13 3.56
4358 5250 2.632544 GCTGCTGCTGTGGATGCAA 61.633 57.895 8.53 0.00 40.13 4.08
4359 5251 3.060000 GCTGCTGCTGTGGATGCA 61.060 61.111 8.53 0.00 38.81 3.96
4360 5252 3.060000 TGCTGCTGCTGTGGATGC 61.060 61.111 17.00 0.00 40.48 3.91
4361 5253 1.520600 TTGTGCTGCTGCTGTGGATG 61.521 55.000 17.00 0.00 40.48 3.51
4362 5254 0.824595 TTTGTGCTGCTGCTGTGGAT 60.825 50.000 17.00 0.00 40.48 3.41
4363 5255 1.453562 TTTGTGCTGCTGCTGTGGA 60.454 52.632 17.00 0.00 40.48 4.02
4364 5256 1.299620 GTTTGTGCTGCTGCTGTGG 60.300 57.895 17.00 0.00 40.48 4.17
4365 5257 0.594028 CTGTTTGTGCTGCTGCTGTG 60.594 55.000 17.00 0.00 40.48 3.66
4366 5258 0.749091 TCTGTTTGTGCTGCTGCTGT 60.749 50.000 17.00 0.00 40.48 4.40
4367 5259 0.596577 ATCTGTTTGTGCTGCTGCTG 59.403 50.000 17.00 0.77 40.48 4.41
4368 5260 0.596577 CATCTGTTTGTGCTGCTGCT 59.403 50.000 17.00 0.00 40.48 4.24
4369 5261 1.007336 GCATCTGTTTGTGCTGCTGC 61.007 55.000 8.89 8.89 38.30 5.25
4370 5262 3.102515 GCATCTGTTTGTGCTGCTG 57.897 52.632 0.00 0.00 38.30 4.41
4375 5267 0.953727 TGTGGAGCATCTGTTTGTGC 59.046 50.000 0.00 0.00 41.57 4.57
4376 5268 4.005650 AGTATGTGGAGCATCTGTTTGTG 58.994 43.478 0.00 0.00 38.94 3.33
4377 5269 4.019860 AGAGTATGTGGAGCATCTGTTTGT 60.020 41.667 0.00 0.00 38.94 2.83
4378 5270 4.511527 AGAGTATGTGGAGCATCTGTTTG 58.488 43.478 0.00 0.00 38.94 2.93
4379 5271 4.833478 AGAGTATGTGGAGCATCTGTTT 57.167 40.909 0.00 0.00 38.94 2.83
4380 5272 4.833478 AAGAGTATGTGGAGCATCTGTT 57.167 40.909 0.00 0.00 38.94 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.