Multiple sequence alignment - TraesCS6B01G110600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G110600 | chr6B | 100.000 | 7520 | 0 | 0 | 1 | 7520 | 92748887 | 92756406 | 0.000000e+00 | 13887.0 |
1 | TraesCS6B01G110600 | chr6B | 85.124 | 605 | 87 | 3 | 2 | 605 | 545597756 | 545597154 | 3.860000e-172 | 616.0 |
2 | TraesCS6B01G110600 | chr6B | 87.958 | 191 | 17 | 5 | 657 | 846 | 179456313 | 179456128 | 3.530000e-53 | 220.0 |
3 | TraesCS6B01G110600 | chrUn | 94.121 | 3266 | 122 | 31 | 3945 | 7178 | 20112280 | 20109053 | 0.000000e+00 | 4903.0 |
4 | TraesCS6B01G110600 | chrUn | 93.264 | 1915 | 83 | 20 | 849 | 2739 | 20115373 | 20113481 | 0.000000e+00 | 2780.0 |
5 | TraesCS6B01G110600 | chrUn | 93.728 | 1116 | 45 | 12 | 2844 | 3947 | 20113489 | 20112387 | 0.000000e+00 | 1650.0 |
6 | TraesCS6B01G110600 | chrUn | 90.291 | 721 | 50 | 8 | 2557 | 3276 | 368795189 | 368794488 | 0.000000e+00 | 926.0 |
7 | TraesCS6B01G110600 | chrUn | 90.291 | 721 | 50 | 8 | 2557 | 3276 | 467870564 | 467869863 | 0.000000e+00 | 926.0 |
8 | TraesCS6B01G110600 | chrUn | 92.994 | 157 | 11 | 0 | 3280 | 3436 | 178721383 | 178721539 | 5.870000e-56 | 230.0 |
9 | TraesCS6B01G110600 | chrUn | 89.706 | 136 | 11 | 3 | 3556 | 3689 | 455427513 | 455427379 | 3.610000e-38 | 171.0 |
10 | TraesCS6B01G110600 | chrUn | 92.174 | 115 | 8 | 1 | 7210 | 7324 | 20109055 | 20108942 | 2.170000e-35 | 161.0 |
11 | TraesCS6B01G110600 | chr6A | 93.031 | 3171 | 114 | 52 | 846 | 3947 | 56244268 | 56247400 | 0.000000e+00 | 4532.0 |
12 | TraesCS6B01G110600 | chr6A | 95.481 | 2058 | 52 | 15 | 3945 | 5970 | 56247510 | 56249558 | 0.000000e+00 | 3247.0 |
13 | TraesCS6B01G110600 | chr6A | 91.260 | 1087 | 59 | 17 | 6104 | 7178 | 56249554 | 56250616 | 0.000000e+00 | 1448.0 |
14 | TraesCS6B01G110600 | chr6A | 83.455 | 822 | 82 | 29 | 5484 | 6267 | 604439371 | 604438566 | 0.000000e+00 | 715.0 |
15 | TraesCS6B01G110600 | chr6A | 92.169 | 166 | 11 | 1 | 3276 | 3439 | 48520205 | 48520040 | 4.540000e-57 | 233.0 |
16 | TraesCS6B01G110600 | chr6A | 92.174 | 115 | 7 | 1 | 7210 | 7322 | 56250614 | 56250728 | 2.170000e-35 | 161.0 |
17 | TraesCS6B01G110600 | chr5B | 90.481 | 998 | 75 | 11 | 2280 | 3276 | 700246824 | 700245846 | 0.000000e+00 | 1299.0 |
18 | TraesCS6B01G110600 | chr5B | 90.481 | 998 | 75 | 8 | 2280 | 3276 | 700270813 | 700269835 | 0.000000e+00 | 1299.0 |
19 | TraesCS6B01G110600 | chr5B | 90.490 | 999 | 72 | 11 | 2280 | 3276 | 699943573 | 699944550 | 0.000000e+00 | 1297.0 |
20 | TraesCS6B01G110600 | chr5B | 84.163 | 663 | 102 | 3 | 2 | 663 | 591488058 | 591488718 | 2.290000e-179 | 640.0 |
21 | TraesCS6B01G110600 | chr5B | 90.942 | 276 | 25 | 0 | 2280 | 2555 | 704022700 | 704022975 | 9.220000e-99 | 372.0 |
22 | TraesCS6B01G110600 | chr5B | 92.857 | 126 | 8 | 1 | 3556 | 3681 | 700244413 | 700244537 | 1.670000e-41 | 182.0 |
23 | TraesCS6B01G110600 | chr5B | 92.857 | 126 | 8 | 1 | 3556 | 3681 | 700268398 | 700268522 | 1.670000e-41 | 182.0 |
24 | TraesCS6B01G110600 | chr5B | 88.000 | 50 | 6 | 0 | 5368 | 5417 | 543285151 | 543285102 | 8.150000e-05 | 60.2 |
25 | TraesCS6B01G110600 | chr4A | 90.000 | 1000 | 68 | 18 | 2280 | 3276 | 616678095 | 616677125 | 0.000000e+00 | 1264.0 |
26 | TraesCS6B01G110600 | chr4A | 92.126 | 127 | 7 | 3 | 3556 | 3681 | 616676320 | 616676444 | 7.750000e-40 | 176.0 |
27 | TraesCS6B01G110600 | chr4A | 85.714 | 105 | 9 | 5 | 4256 | 4356 | 743638551 | 743638449 | 1.030000e-18 | 106.0 |
28 | TraesCS6B01G110600 | chr5D | 89.326 | 890 | 66 | 12 | 2280 | 3161 | 552045622 | 552044754 | 0.000000e+00 | 1090.0 |
29 | TraesCS6B01G110600 | chr5D | 93.210 | 162 | 9 | 1 | 3280 | 3439 | 322370164 | 322370003 | 3.510000e-58 | 237.0 |
30 | TraesCS6B01G110600 | chr5D | 95.070 | 142 | 6 | 1 | 3135 | 3276 | 552044138 | 552043998 | 9.820000e-54 | 222.0 |
31 | TraesCS6B01G110600 | chr3B | 82.619 | 863 | 120 | 17 | 2 | 846 | 722216377 | 722217227 | 0.000000e+00 | 736.0 |
32 | TraesCS6B01G110600 | chr3B | 88.581 | 578 | 51 | 11 | 4400 | 4969 | 43709335 | 43709905 | 0.000000e+00 | 688.0 |
33 | TraesCS6B01G110600 | chr3B | 80.215 | 839 | 78 | 41 | 5484 | 6283 | 43710483 | 43711272 | 3.970000e-152 | 549.0 |
34 | TraesCS6B01G110600 | chr3B | 89.239 | 381 | 24 | 5 | 1743 | 2122 | 43708785 | 43709149 | 1.910000e-125 | 460.0 |
35 | TraesCS6B01G110600 | chr3B | 89.562 | 297 | 23 | 5 | 4968 | 5259 | 43710056 | 43710349 | 3.310000e-98 | 370.0 |
36 | TraesCS6B01G110600 | chr3B | 93.210 | 162 | 9 | 1 | 3280 | 3439 | 428703821 | 428703660 | 3.510000e-58 | 237.0 |
37 | TraesCS6B01G110600 | chr3B | 93.023 | 43 | 3 | 0 | 5365 | 5407 | 818304734 | 818304776 | 6.300000e-06 | 63.9 |
38 | TraesCS6B01G110600 | chr2D | 90.035 | 572 | 45 | 6 | 4400 | 4969 | 606103408 | 606103969 | 0.000000e+00 | 730.0 |
39 | TraesCS6B01G110600 | chr2D | 89.310 | 580 | 40 | 11 | 4400 | 4969 | 588505875 | 588506442 | 0.000000e+00 | 708.0 |
40 | TraesCS6B01G110600 | chr2D | 82.005 | 828 | 90 | 26 | 5484 | 6283 | 588511746 | 588512542 | 0.000000e+00 | 649.0 |
41 | TraesCS6B01G110600 | chr2D | 83.283 | 664 | 106 | 5 | 2 | 663 | 12896092 | 12895432 | 2.320000e-169 | 606.0 |
42 | TraesCS6B01G110600 | chr2D | 87.850 | 535 | 38 | 8 | 1743 | 2276 | 588505290 | 588505798 | 3.000000e-168 | 603.0 |
43 | TraesCS6B01G110600 | chr2D | 85.399 | 363 | 41 | 5 | 5932 | 6283 | 606105982 | 606106343 | 4.290000e-97 | 366.0 |
44 | TraesCS6B01G110600 | chr2D | 88.514 | 296 | 25 | 6 | 4968 | 5259 | 588506593 | 588506883 | 4.320000e-92 | 350.0 |
45 | TraesCS6B01G110600 | chr2D | 92.063 | 189 | 10 | 3 | 1743 | 1930 | 606103028 | 606103212 | 2.080000e-65 | 261.0 |
46 | TraesCS6B01G110600 | chr2D | 93.789 | 161 | 8 | 1 | 3280 | 3438 | 526525119 | 526524959 | 2.710000e-59 | 241.0 |
47 | TraesCS6B01G110600 | chr2D | 86.190 | 210 | 24 | 4 | 5706 | 5914 | 606104801 | 606105006 | 9.820000e-54 | 222.0 |
48 | TraesCS6B01G110600 | chr2D | 86.705 | 173 | 18 | 4 | 654 | 825 | 29068831 | 29068663 | 3.580000e-43 | 187.0 |
49 | TraesCS6B01G110600 | chr1B | 83.314 | 845 | 80 | 32 | 5484 | 6283 | 641510325 | 641509497 | 0.000000e+00 | 723.0 |
50 | TraesCS6B01G110600 | chr1B | 82.971 | 276 | 28 | 11 | 4989 | 5260 | 641510682 | 641510422 | 1.630000e-56 | 231.0 |
51 | TraesCS6B01G110600 | chr2A | 89.637 | 579 | 41 | 10 | 4400 | 4969 | 723108954 | 723109522 | 0.000000e+00 | 719.0 |
52 | TraesCS6B01G110600 | chr2A | 81.763 | 828 | 92 | 26 | 5484 | 6283 | 723110099 | 723110895 | 8.230000e-179 | 638.0 |
53 | TraesCS6B01G110600 | chr2A | 87.664 | 535 | 39 | 8 | 1743 | 2276 | 723108369 | 723108877 | 1.400000e-166 | 597.0 |
54 | TraesCS6B01G110600 | chr2A | 83.196 | 607 | 77 | 15 | 5706 | 6305 | 748800816 | 748801404 | 3.990000e-147 | 532.0 |
55 | TraesCS6B01G110600 | chr2A | 85.841 | 226 | 17 | 7 | 5484 | 5707 | 748800578 | 748800790 | 7.590000e-55 | 226.0 |
56 | TraesCS6B01G110600 | chr2A | 87.435 | 191 | 18 | 5 | 657 | 846 | 161636599 | 161636414 | 1.640000e-51 | 215.0 |
57 | TraesCS6B01G110600 | chr6D | 83.107 | 811 | 93 | 28 | 5484 | 6267 | 457548104 | 457547311 | 0.000000e+00 | 699.0 |
58 | TraesCS6B01G110600 | chr6D | 83.274 | 281 | 28 | 8 | 4984 | 5260 | 457548504 | 457548239 | 2.710000e-59 | 241.0 |
59 | TraesCS6B01G110600 | chr1A | 83.861 | 663 | 105 | 2 | 2 | 663 | 547343207 | 547343868 | 1.380000e-176 | 630.0 |
60 | TraesCS6B01G110600 | chr1A | 82.163 | 527 | 44 | 24 | 5534 | 6025 | 557093739 | 557093228 | 2.530000e-109 | 407.0 |
61 | TraesCS6B01G110600 | chr1A | 87.958 | 191 | 17 | 5 | 657 | 846 | 527957422 | 527957237 | 3.530000e-53 | 220.0 |
62 | TraesCS6B01G110600 | chr7A | 83.483 | 666 | 108 | 2 | 2 | 666 | 595203472 | 595202808 | 2.980000e-173 | 619.0 |
63 | TraesCS6B01G110600 | chr7A | 91.716 | 169 | 12 | 1 | 3275 | 3441 | 323448598 | 323448430 | 4.540000e-57 | 233.0 |
64 | TraesCS6B01G110600 | chr7A | 97.059 | 34 | 1 | 0 | 5369 | 5402 | 510754133 | 510754166 | 2.930000e-04 | 58.4 |
65 | TraesCS6B01G110600 | chr4B | 82.982 | 664 | 108 | 5 | 2 | 663 | 615148432 | 615147772 | 5.020000e-166 | 595.0 |
66 | TraesCS6B01G110600 | chr4B | 87.047 | 193 | 21 | 4 | 654 | 846 | 646251469 | 646251657 | 1.640000e-51 | 215.0 |
67 | TraesCS6B01G110600 | chr4D | 83.133 | 664 | 84 | 16 | 2 | 663 | 481462156 | 481461519 | 1.410000e-161 | 580.0 |
68 | TraesCS6B01G110600 | chr4D | 86.387 | 191 | 20 | 5 | 657 | 846 | 466287834 | 466288019 | 3.560000e-48 | 204.0 |
69 | TraesCS6B01G110600 | chr4D | 97.368 | 38 | 1 | 0 | 5368 | 5405 | 395380165 | 395380202 | 1.750000e-06 | 65.8 |
70 | TraesCS6B01G110600 | chr7B | 81.764 | 669 | 96 | 15 | 2 | 660 | 543193785 | 543193133 | 3.090000e-148 | 536.0 |
71 | TraesCS6B01G110600 | chr7B | 76.402 | 428 | 75 | 17 | 3945 | 4355 | 583150379 | 583149961 | 2.750000e-49 | 207.0 |
72 | TraesCS6B01G110600 | chr7B | 84.737 | 190 | 21 | 6 | 654 | 841 | 543193069 | 543192886 | 4.630000e-42 | 183.0 |
73 | TraesCS6B01G110600 | chr7D | 80.238 | 673 | 115 | 12 | 2 | 662 | 151983 | 151317 | 2.440000e-134 | 490.0 |
74 | TraesCS6B01G110600 | chr7D | 97.059 | 34 | 0 | 1 | 5369 | 5402 | 247885857 | 247885889 | 1.000000e-03 | 56.5 |
75 | TraesCS6B01G110600 | chr7D | 96.774 | 31 | 1 | 0 | 5371 | 5401 | 124626812 | 124626842 | 1.400000e-02 | 52.8 |
76 | TraesCS6B01G110600 | chr2B | 90.345 | 290 | 20 | 5 | 4968 | 5252 | 754534993 | 754535279 | 2.560000e-99 | 374.0 |
77 | TraesCS6B01G110600 | chr2B | 77.041 | 392 | 51 | 25 | 3984 | 4356 | 748551970 | 748552341 | 9.960000e-44 | 189.0 |
78 | TraesCS6B01G110600 | chr5A | 92.638 | 163 | 8 | 3 | 3280 | 3439 | 467400019 | 467400180 | 1.630000e-56 | 231.0 |
79 | TraesCS6B01G110600 | chr3D | 97.059 | 34 | 1 | 0 | 5367 | 5400 | 136055764 | 136055731 | 2.930000e-04 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G110600 | chr6B | 92748887 | 92756406 | 7519 | False | 13887.000000 | 13887 | 100.000000 | 1 | 7520 | 1 | chr6B.!!$F1 | 7519 |
1 | TraesCS6B01G110600 | chr6B | 545597154 | 545597756 | 602 | True | 616.000000 | 616 | 85.124000 | 2 | 605 | 1 | chr6B.!!$R2 | 603 |
2 | TraesCS6B01G110600 | chrUn | 20108942 | 20115373 | 6431 | True | 2373.500000 | 4903 | 93.321750 | 849 | 7324 | 4 | chrUn.!!$R4 | 6475 |
3 | TraesCS6B01G110600 | chrUn | 368794488 | 368795189 | 701 | True | 926.000000 | 926 | 90.291000 | 2557 | 3276 | 1 | chrUn.!!$R1 | 719 |
4 | TraesCS6B01G110600 | chrUn | 467869863 | 467870564 | 701 | True | 926.000000 | 926 | 90.291000 | 2557 | 3276 | 1 | chrUn.!!$R3 | 719 |
5 | TraesCS6B01G110600 | chr6A | 56244268 | 56250728 | 6460 | False | 2347.000000 | 4532 | 92.986500 | 846 | 7322 | 4 | chr6A.!!$F1 | 6476 |
6 | TraesCS6B01G110600 | chr6A | 604438566 | 604439371 | 805 | True | 715.000000 | 715 | 83.455000 | 5484 | 6267 | 1 | chr6A.!!$R2 | 783 |
7 | TraesCS6B01G110600 | chr5B | 700245846 | 700246824 | 978 | True | 1299.000000 | 1299 | 90.481000 | 2280 | 3276 | 1 | chr5B.!!$R2 | 996 |
8 | TraesCS6B01G110600 | chr5B | 700269835 | 700270813 | 978 | True | 1299.000000 | 1299 | 90.481000 | 2280 | 3276 | 1 | chr5B.!!$R3 | 996 |
9 | TraesCS6B01G110600 | chr5B | 699943573 | 699944550 | 977 | False | 1297.000000 | 1297 | 90.490000 | 2280 | 3276 | 1 | chr5B.!!$F2 | 996 |
10 | TraesCS6B01G110600 | chr5B | 591488058 | 591488718 | 660 | False | 640.000000 | 640 | 84.163000 | 2 | 663 | 1 | chr5B.!!$F1 | 661 |
11 | TraesCS6B01G110600 | chr4A | 616677125 | 616678095 | 970 | True | 1264.000000 | 1264 | 90.000000 | 2280 | 3276 | 1 | chr4A.!!$R1 | 996 |
12 | TraesCS6B01G110600 | chr5D | 552043998 | 552045622 | 1624 | True | 656.000000 | 1090 | 92.198000 | 2280 | 3276 | 2 | chr5D.!!$R2 | 996 |
13 | TraesCS6B01G110600 | chr3B | 722216377 | 722217227 | 850 | False | 736.000000 | 736 | 82.619000 | 2 | 846 | 1 | chr3B.!!$F1 | 844 |
14 | TraesCS6B01G110600 | chr3B | 43708785 | 43711272 | 2487 | False | 516.750000 | 688 | 86.899250 | 1743 | 6283 | 4 | chr3B.!!$F3 | 4540 |
15 | TraesCS6B01G110600 | chr2D | 588511746 | 588512542 | 796 | False | 649.000000 | 649 | 82.005000 | 5484 | 6283 | 1 | chr2D.!!$F1 | 799 |
16 | TraesCS6B01G110600 | chr2D | 12895432 | 12896092 | 660 | True | 606.000000 | 606 | 83.283000 | 2 | 663 | 1 | chr2D.!!$R1 | 661 |
17 | TraesCS6B01G110600 | chr2D | 588505290 | 588506883 | 1593 | False | 553.666667 | 708 | 88.558000 | 1743 | 5259 | 3 | chr2D.!!$F2 | 3516 |
18 | TraesCS6B01G110600 | chr2D | 606103028 | 606106343 | 3315 | False | 394.750000 | 730 | 88.421750 | 1743 | 6283 | 4 | chr2D.!!$F3 | 4540 |
19 | TraesCS6B01G110600 | chr1B | 641509497 | 641510682 | 1185 | True | 477.000000 | 723 | 83.142500 | 4989 | 6283 | 2 | chr1B.!!$R1 | 1294 |
20 | TraesCS6B01G110600 | chr2A | 723108369 | 723110895 | 2526 | False | 651.333333 | 719 | 86.354667 | 1743 | 6283 | 3 | chr2A.!!$F1 | 4540 |
21 | TraesCS6B01G110600 | chr2A | 748800578 | 748801404 | 826 | False | 379.000000 | 532 | 84.518500 | 5484 | 6305 | 2 | chr2A.!!$F2 | 821 |
22 | TraesCS6B01G110600 | chr6D | 457547311 | 457548504 | 1193 | True | 470.000000 | 699 | 83.190500 | 4984 | 6267 | 2 | chr6D.!!$R1 | 1283 |
23 | TraesCS6B01G110600 | chr1A | 547343207 | 547343868 | 661 | False | 630.000000 | 630 | 83.861000 | 2 | 663 | 1 | chr1A.!!$F1 | 661 |
24 | TraesCS6B01G110600 | chr1A | 557093228 | 557093739 | 511 | True | 407.000000 | 407 | 82.163000 | 5534 | 6025 | 1 | chr1A.!!$R2 | 491 |
25 | TraesCS6B01G110600 | chr7A | 595202808 | 595203472 | 664 | True | 619.000000 | 619 | 83.483000 | 2 | 666 | 1 | chr7A.!!$R2 | 664 |
26 | TraesCS6B01G110600 | chr4B | 615147772 | 615148432 | 660 | True | 595.000000 | 595 | 82.982000 | 2 | 663 | 1 | chr4B.!!$R1 | 661 |
27 | TraesCS6B01G110600 | chr4D | 481461519 | 481462156 | 637 | True | 580.000000 | 580 | 83.133000 | 2 | 663 | 1 | chr4D.!!$R1 | 661 |
28 | TraesCS6B01G110600 | chr7B | 543192886 | 543193785 | 899 | True | 359.500000 | 536 | 83.250500 | 2 | 841 | 2 | chr7B.!!$R2 | 839 |
29 | TraesCS6B01G110600 | chr7D | 151317 | 151983 | 666 | True | 490.000000 | 490 | 80.238000 | 2 | 662 | 1 | chr7D.!!$R1 | 660 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
86 | 90 | 0.039618 | GCCAAAGTCATGGGGAGGAA | 59.960 | 55.000 | 0.00 | 0.0 | 41.01 | 3.36 | F |
713 | 816 | 0.108138 | CCCGTCGCAGAGAAAGGATT | 60.108 | 55.000 | 0.00 | 0.0 | 36.95 | 3.01 | F |
1218 | 1322 | 0.039256 | AGCACATTGTTTGCGCGAAT | 60.039 | 45.000 | 14.34 | 0.0 | 45.15 | 3.34 | F |
1535 | 1662 | 0.391661 | GCATCTTCTCAGGAACGGCA | 60.392 | 55.000 | 0.00 | 0.0 | 0.00 | 5.69 | F |
2299 | 2490 | 0.898320 | ACTAGTCGAATGCCTGTGCT | 59.102 | 50.000 | 0.00 | 0.0 | 38.71 | 4.40 | F |
3842 | 4712 | 0.035534 | ATGCTTGGTACGGCACATCA | 60.036 | 50.000 | 8.54 | 0.0 | 41.64 | 3.07 | F |
4030 | 5018 | 0.328548 | AATTGGGAGTAGGGGGAGGG | 60.329 | 60.000 | 0.00 | 0.0 | 0.00 | 4.30 | F |
4874 | 5902 | 0.888736 | CCGATGTTGGAGGTGTTGCA | 60.889 | 55.000 | 0.00 | 0.0 | 0.00 | 4.08 | F |
5733 | 7017 | 1.198637 | CTACTGAACTTGCCTTGCTGC | 59.801 | 52.381 | 0.00 | 0.0 | 0.00 | 5.25 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1208 | 1312 | 0.110867 | CGAACAGTCATTCGCGCAAA | 60.111 | 50.000 | 8.75 | 0.00 | 44.37 | 3.68 | R |
1721 | 1870 | 1.734163 | ATAGCTTTCCGGTTTCCACG | 58.266 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 | R |
2807 | 3008 | 2.535012 | TACGGACTTGATTGTGTGCA | 57.465 | 45.000 | 0.00 | 0.00 | 0.00 | 4.57 | R |
3268 | 4118 | 4.591924 | GGAACGGAGGGAGGATAATCTTTA | 59.408 | 45.833 | 0.00 | 0.00 | 0.00 | 1.85 | R |
4052 | 5040 | 0.460284 | CTACCGTAGCAGCCCAACAG | 60.460 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 | R |
5733 | 7017 | 2.187946 | GTGATGGGCCTCACTCCG | 59.812 | 66.667 | 21.50 | 0.00 | 41.87 | 4.63 | R |
6005 | 8266 | 1.001815 | GTTCACATTTCCACCACACGG | 60.002 | 52.381 | 0.00 | 0.00 | 38.77 | 4.94 | R |
6155 | 8417 | 0.093705 | CAGAGCTAAACAAGTCGCGC | 59.906 | 55.000 | 0.00 | 0.00 | 0.00 | 6.86 | R |
7370 | 9672 | 0.175760 | ATGTTGTATCGGAGCTGCGT | 59.824 | 50.000 | 27.20 | 16.53 | 0.00 | 5.24 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
44 | 45 | 2.443952 | TCCATCGCCCGATCCAGT | 60.444 | 61.111 | 0.00 | 0.00 | 31.62 | 4.00 |
46 | 47 | 2.501128 | CATCGCCCGATCCAGTGT | 59.499 | 61.111 | 0.00 | 0.00 | 31.62 | 3.55 |
58 | 59 | 4.383118 | CCGATCCAGTGTATCTGAGGTTTT | 60.383 | 45.833 | 0.00 | 0.00 | 46.27 | 2.43 |
74 | 75 | 0.476771 | TTTTCCTCCGGAGCCAAAGT | 59.523 | 50.000 | 26.87 | 0.00 | 31.21 | 2.66 |
76 | 77 | 1.125093 | TTCCTCCGGAGCCAAAGTCA | 61.125 | 55.000 | 26.87 | 0.95 | 31.21 | 3.41 |
86 | 90 | 0.039618 | GCCAAAGTCATGGGGAGGAA | 59.960 | 55.000 | 0.00 | 0.00 | 41.01 | 3.36 |
94 | 98 | 0.549950 | CATGGGGAGGAAGAGCACAT | 59.450 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
132 | 136 | 2.549992 | CCAAGAAAGATCACGACACCCA | 60.550 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
156 | 160 | 4.781959 | CCGCCGTCGCCGACTTTA | 62.782 | 66.667 | 16.07 | 0.00 | 35.63 | 1.85 |
164 | 168 | 2.344025 | GTCGCCGACTTTAATGAAGGT | 58.656 | 47.619 | 10.56 | 0.00 | 39.79 | 3.50 |
288 | 294 | 1.005512 | CACGATCCACCACGACCAA | 60.006 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
293 | 299 | 0.181587 | ATCCACCACGACCAAACACA | 59.818 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
461 | 474 | 0.110644 | GGAGCAAACGAGCAAGTTCG | 60.111 | 55.000 | 4.77 | 4.77 | 45.70 | 3.95 |
494 | 508 | 0.759346 | ACCTCACGCTCCAAAGAAGT | 59.241 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
506 | 520 | 2.227194 | CAAAGAAGTACACCCACCACC | 58.773 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
519 | 533 | 3.492353 | CCACCCCCAGCCGATCAT | 61.492 | 66.667 | 0.00 | 0.00 | 0.00 | 2.45 |
569 | 583 | 2.816958 | CAGCCGTTGATCTGCGCT | 60.817 | 61.111 | 9.73 | 0.00 | 0.00 | 5.92 |
709 | 812 | 3.181967 | CGCCCGTCGCAGAGAAAG | 61.182 | 66.667 | 0.00 | 0.00 | 36.95 | 2.62 |
711 | 814 | 2.970639 | CCCGTCGCAGAGAAAGGA | 59.029 | 61.111 | 0.00 | 0.00 | 36.95 | 3.36 |
712 | 815 | 1.517832 | CCCGTCGCAGAGAAAGGAT | 59.482 | 57.895 | 0.00 | 0.00 | 36.95 | 3.24 |
713 | 816 | 0.108138 | CCCGTCGCAGAGAAAGGATT | 60.108 | 55.000 | 0.00 | 0.00 | 36.95 | 3.01 |
714 | 817 | 1.002366 | CCGTCGCAGAGAAAGGATTG | 58.998 | 55.000 | 0.00 | 0.00 | 36.95 | 2.67 |
717 | 820 | 0.740868 | TCGCAGAGAAAGGATTGCCG | 60.741 | 55.000 | 0.00 | 0.00 | 39.96 | 5.69 |
718 | 821 | 1.431036 | GCAGAGAAAGGATTGCCGC | 59.569 | 57.895 | 0.00 | 0.00 | 39.96 | 6.53 |
719 | 822 | 1.997928 | GCAGAGAAAGGATTGCCGCC | 61.998 | 60.000 | 0.00 | 0.00 | 39.96 | 6.13 |
720 | 823 | 1.450312 | AGAGAAAGGATTGCCGCCG | 60.450 | 57.895 | 0.00 | 0.00 | 39.96 | 6.46 |
721 | 824 | 3.113386 | GAGAAAGGATTGCCGCCGC | 62.113 | 63.158 | 0.00 | 0.00 | 39.96 | 6.53 |
787 | 890 | 0.752009 | CGACGAGAGGGAGGATTGGA | 60.752 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 |
796 | 899 | 2.696125 | AGGATTGGATGGGGCGGT | 60.696 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
869 | 972 | 2.895865 | CGCAGGCAGATGAGGCAG | 60.896 | 66.667 | 0.00 | 0.00 | 36.37 | 4.85 |
904 | 1007 | 2.294791 | TCATAAAACCGTTGGCAGTTGG | 59.705 | 45.455 | 0.79 | 0.79 | 0.00 | 3.77 |
942 | 1045 | 3.365265 | GTTGGCGGCTGGAACTGG | 61.365 | 66.667 | 11.43 | 0.00 | 0.00 | 4.00 |
1010 | 1113 | 4.440829 | TTTCCCCATGCCGCTCCC | 62.441 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1197 | 1301 | 0.251165 | TTTCCTTTTCTGGAGCCCGG | 60.251 | 55.000 | 0.00 | 0.00 | 37.43 | 5.73 |
1198 | 1302 | 2.044946 | CCTTTTCTGGAGCCCGGG | 60.045 | 66.667 | 19.09 | 19.09 | 0.00 | 5.73 |
1208 | 1312 | 3.628646 | GAGCCCGGGAGCACATTGT | 62.629 | 63.158 | 29.31 | 0.00 | 34.23 | 2.71 |
1218 | 1322 | 0.039256 | AGCACATTGTTTGCGCGAAT | 60.039 | 45.000 | 14.34 | 0.00 | 45.15 | 3.34 |
1221 | 1325 | 1.383080 | CACATTGTTTGCGCGAATGAC | 59.617 | 47.619 | 20.30 | 8.94 | 32.47 | 3.06 |
1251 | 1356 | 4.430423 | CGCGTGCGCTCTTTCCAC | 62.430 | 66.667 | 9.73 | 0.00 | 39.32 | 4.02 |
1252 | 1357 | 3.044305 | GCGTGCGCTCTTTCCACT | 61.044 | 61.111 | 9.73 | 0.00 | 38.26 | 4.00 |
1253 | 1358 | 1.736645 | GCGTGCGCTCTTTCCACTA | 60.737 | 57.895 | 9.73 | 0.00 | 38.26 | 2.74 |
1270 | 1375 | 5.527951 | TCCACTATTTTTGTGTTGATGTGC | 58.472 | 37.500 | 0.00 | 0.00 | 33.92 | 4.57 |
1293 | 1398 | 0.458543 | TCATCGAACGGAAGCAGCTC | 60.459 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
1304 | 1431 | 3.551046 | CGGAAGCAGCTCGATGTATAGTT | 60.551 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
1313 | 1440 | 5.768662 | AGCTCGATGTATAGTTAGCTTGGTA | 59.231 | 40.000 | 0.00 | 0.00 | 36.98 | 3.25 |
1314 | 1441 | 5.857517 | GCTCGATGTATAGTTAGCTTGGTAC | 59.142 | 44.000 | 0.00 | 0.00 | 0.00 | 3.34 |
1315 | 1442 | 6.323203 | TCGATGTATAGTTAGCTTGGTACC | 57.677 | 41.667 | 4.43 | 4.43 | 0.00 | 3.34 |
1475 | 1602 | 3.032609 | CCTGCGACGATGCCGATC | 61.033 | 66.667 | 0.00 | 0.00 | 39.50 | 3.69 |
1508 | 1635 | 0.608640 | ACATCAGGAAGGACGACACC | 59.391 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
1535 | 1662 | 0.391661 | GCATCTTCTCAGGAACGGCA | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1538 | 1665 | 2.859165 | TCTTCTCAGGAACGGCAAAT | 57.141 | 45.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1582 | 1709 | 4.860022 | TGGATCTTCCTTGGAGAAATTCC | 58.140 | 43.478 | 0.00 | 0.00 | 41.11 | 3.01 |
1583 | 1710 | 4.292041 | TGGATCTTCCTTGGAGAAATTCCA | 59.708 | 41.667 | 0.00 | 0.00 | 45.02 | 3.53 |
1585 | 1712 | 8.176300 | TGGATCTTCCTTGGAGAAATTCCACA | 62.176 | 42.308 | 0.00 | 0.00 | 44.56 | 4.17 |
1617 | 1766 | 1.889530 | CGTGTCCTCCTCCTGGTTCC | 61.890 | 65.000 | 0.00 | 0.00 | 34.23 | 3.62 |
1721 | 1870 | 8.349983 | TGAACTAAGCTTAAAAAGACATGAACC | 58.650 | 33.333 | 7.74 | 0.00 | 0.00 | 3.62 |
2123 | 2301 | 2.772515 | AGGGCTGACAGGAAGGTAATAC | 59.227 | 50.000 | 4.26 | 0.00 | 0.00 | 1.89 |
2161 | 2339 | 9.733219 | TGGTTTCTTATTTTAGTTACAAAACGG | 57.267 | 29.630 | 0.00 | 0.00 | 40.73 | 4.44 |
2206 | 2391 | 2.280797 | TCACGGCTTGCACACCTC | 60.281 | 61.111 | 2.85 | 0.00 | 0.00 | 3.85 |
2299 | 2490 | 0.898320 | ACTAGTCGAATGCCTGTGCT | 59.102 | 50.000 | 0.00 | 0.00 | 38.71 | 4.40 |
2384 | 2578 | 4.082300 | TGGATTTGAAAATGACACATCGGG | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 5.14 |
2412 | 2607 | 2.863137 | GCGGAAACATTGCAGTTTTGAA | 59.137 | 40.909 | 5.64 | 0.00 | 41.48 | 2.69 |
2426 | 2621 | 8.183830 | TGCAGTTTTGAAAATTTCAGTGTAAG | 57.816 | 30.769 | 8.51 | 1.18 | 41.38 | 2.34 |
2479 | 2674 | 6.493115 | TGAAAGGACTTATGCATTTCCAGAAA | 59.507 | 34.615 | 18.81 | 0.00 | 34.46 | 2.52 |
2505 | 2700 | 6.680874 | AACATGAACAATTGCAAACATGTT | 57.319 | 29.167 | 27.41 | 27.41 | 46.64 | 2.71 |
2537 | 2732 | 8.540388 | TGGGCCATATATGAAAGATAGAAGTAC | 58.460 | 37.037 | 14.54 | 0.00 | 0.00 | 2.73 |
2807 | 3008 | 6.318144 | CCAGATCTGATGCACAAAATAGAGTT | 59.682 | 38.462 | 24.62 | 0.00 | 0.00 | 3.01 |
2823 | 3024 | 2.880890 | AGAGTTGCACACAATCAAGTCC | 59.119 | 45.455 | 6.27 | 0.00 | 41.29 | 3.85 |
3145 | 3995 | 6.585416 | AGCACAGGAAATCAGACAAATTTTT | 58.415 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3239 | 4089 | 6.775939 | ATCAATGAGCATGTTATACACTCG | 57.224 | 37.500 | 0.00 | 0.00 | 27.43 | 4.18 |
3353 | 4205 | 6.376299 | ACATTCGGATGTATATAGACGCCTTA | 59.624 | 38.462 | 7.81 | 0.00 | 44.51 | 2.69 |
3354 | 4206 | 6.822667 | TTCGGATGTATATAGACGCCTTAA | 57.177 | 37.500 | 7.38 | 1.03 | 0.00 | 1.85 |
3517 | 4369 | 5.470098 | GCTCACTTAAAAGGACATCAGACAA | 59.530 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3542 | 4394 | 6.263344 | TCACTATTGCGTACATAACTGTCTC | 58.737 | 40.000 | 0.00 | 0.00 | 36.79 | 3.36 |
3584 | 4436 | 0.742281 | CAAGCATGAGGGAGGTGTCG | 60.742 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3681 | 4541 | 1.634960 | TGTATCCGTTGGTGTCAGGA | 58.365 | 50.000 | 0.00 | 0.00 | 37.17 | 3.86 |
3682 | 4542 | 1.972075 | TGTATCCGTTGGTGTCAGGAA | 59.028 | 47.619 | 0.00 | 0.00 | 36.25 | 3.36 |
3683 | 4543 | 2.569853 | TGTATCCGTTGGTGTCAGGAAT | 59.430 | 45.455 | 0.00 | 0.00 | 36.25 | 3.01 |
3684 | 4544 | 3.770388 | TGTATCCGTTGGTGTCAGGAATA | 59.230 | 43.478 | 0.00 | 0.00 | 36.25 | 1.75 |
3686 | 4546 | 3.773418 | TCCGTTGGTGTCAGGAATAAA | 57.227 | 42.857 | 0.00 | 0.00 | 0.00 | 1.40 |
3687 | 4547 | 4.295141 | TCCGTTGGTGTCAGGAATAAAT | 57.705 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
3689 | 4549 | 5.424757 | TCCGTTGGTGTCAGGAATAAATAG | 58.575 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
3690 | 4550 | 5.046159 | TCCGTTGGTGTCAGGAATAAATAGT | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3692 | 4552 | 6.150474 | CCGTTGGTGTCAGGAATAAATAGTTT | 59.850 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
3748 | 4615 | 4.472691 | TTATAATGCTGATCTTGTGCGC | 57.527 | 40.909 | 0.00 | 0.00 | 0.00 | 6.09 |
3837 | 4707 | 2.125310 | CCGATGCTTGGTACGGCA | 60.125 | 61.111 | 8.74 | 8.74 | 42.78 | 5.69 |
3840 | 4710 | 1.089481 | CGATGCTTGGTACGGCACAT | 61.089 | 55.000 | 8.54 | 0.26 | 41.64 | 3.21 |
3842 | 4712 | 0.035534 | ATGCTTGGTACGGCACATCA | 60.036 | 50.000 | 8.54 | 0.00 | 41.64 | 3.07 |
4020 | 5002 | 2.573915 | GGAAGAGGAGACAATTGGGAGT | 59.426 | 50.000 | 10.83 | 0.00 | 0.00 | 3.85 |
4030 | 5018 | 0.328548 | AATTGGGAGTAGGGGGAGGG | 60.329 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4038 | 5026 | 3.961901 | TAGGGGGAGGGGGAGGTGA | 62.962 | 68.421 | 0.00 | 0.00 | 0.00 | 4.02 |
4052 | 5040 | 1.478916 | GAGGTGAAGGAGGTAGTGAGC | 59.521 | 57.143 | 0.00 | 0.00 | 0.00 | 4.26 |
4053 | 5041 | 1.077993 | AGGTGAAGGAGGTAGTGAGCT | 59.922 | 52.381 | 0.00 | 0.00 | 35.63 | 4.09 |
4081 | 5069 | 1.558294 | TGCTACGGTAGAGAGGAGTCA | 59.442 | 52.381 | 19.02 | 1.91 | 0.00 | 3.41 |
4169 | 5157 | 2.247358 | TCCATTGTTTGCTCCCCTTTC | 58.753 | 47.619 | 0.00 | 0.00 | 0.00 | 2.62 |
4189 | 5177 | 5.456921 | TTCCTAGAAGGATCAAATGCCTT | 57.543 | 39.130 | 0.00 | 0.00 | 45.34 | 4.35 |
4224 | 5212 | 1.722034 | GGGATAGATGGAGCAGGACA | 58.278 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4305 | 5295 | 4.514441 | GCAGATCTGATGGTCGAAAATGAT | 59.486 | 41.667 | 27.04 | 0.00 | 0.00 | 2.45 |
4391 | 5381 | 8.030692 | TGGAGAATTGAAAGTTAATGCTGAATG | 58.969 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
4392 | 5382 | 7.009907 | GGAGAATTGAAAGTTAATGCTGAATGC | 59.990 | 37.037 | 0.00 | 0.00 | 43.25 | 3.56 |
4395 | 5385 | 5.963176 | TGAAAGTTAATGCTGAATGCTGA | 57.037 | 34.783 | 0.00 | 0.00 | 43.37 | 4.26 |
4397 | 5387 | 6.927416 | TGAAAGTTAATGCTGAATGCTGAAT | 58.073 | 32.000 | 0.00 | 0.00 | 43.37 | 2.57 |
4690 | 5716 | 4.224991 | TGTTTATGGCCAGGTACTTACC | 57.775 | 45.455 | 13.05 | 0.00 | 46.82 | 2.85 |
4720 | 5746 | 8.028938 | ACATGTTGCTTAAGTTGATCAATTACC | 58.971 | 33.333 | 12.12 | 0.00 | 0.00 | 2.85 |
4754 | 5780 | 6.238293 | GGCATGTGATATGATATCCATCGTTG | 60.238 | 42.308 | 9.78 | 4.65 | 36.71 | 4.10 |
4839 | 5867 | 6.583806 | CAGCAAGACAATTAGTTCAAATGACC | 59.416 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
4874 | 5902 | 0.888736 | CCGATGTTGGAGGTGTTGCA | 60.889 | 55.000 | 0.00 | 0.00 | 0.00 | 4.08 |
4955 | 5991 | 1.654220 | GCATGGACACAACGTTGCT | 59.346 | 52.632 | 27.61 | 13.38 | 0.00 | 3.91 |
5317 | 6531 | 2.152830 | TGGTAACCGGCATGTTGTTAC | 58.847 | 47.619 | 18.17 | 18.17 | 42.14 | 2.50 |
5324 | 6538 | 3.055385 | ACCGGCATGTTGTTACTAGTGAT | 60.055 | 43.478 | 5.39 | 0.00 | 0.00 | 3.06 |
5338 | 6552 | 7.709182 | TGTTACTAGTGATGTATATGTTGTGGC | 59.291 | 37.037 | 5.39 | 0.00 | 0.00 | 5.01 |
5356 | 6570 | 6.964807 | TGTGGCATCATATTAAAAGCAGAT | 57.035 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
5402 | 6617 | 9.938280 | TTTATATTTTGATACGGAGGGAGTATG | 57.062 | 33.333 | 0.00 | 0.00 | 35.19 | 2.39 |
5710 | 6994 | 6.182507 | ACTTTTACGCCCATTCCATAGATA | 57.817 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
5733 | 7017 | 1.198637 | CTACTGAACTTGCCTTGCTGC | 59.801 | 52.381 | 0.00 | 0.00 | 0.00 | 5.25 |
5736 | 7020 | 2.203337 | AACTTGCCTTGCTGCGGA | 60.203 | 55.556 | 0.00 | 0.00 | 0.00 | 5.54 |
5892 | 7178 | 9.162764 | ACATTGTATGTTGGATCTAAACTACAC | 57.837 | 33.333 | 11.79 | 8.17 | 41.63 | 2.90 |
5927 | 8175 | 7.778185 | GGATACAATAACTTAGGAGCTAGGA | 57.222 | 40.000 | 0.00 | 0.00 | 0.00 | 2.94 |
5928 | 8176 | 7.832769 | GGATACAATAACTTAGGAGCTAGGAG | 58.167 | 42.308 | 0.00 | 0.00 | 0.00 | 3.69 |
5996 | 8257 | 7.961325 | AGCAAAATTTGGTTTATACTTGTGG | 57.039 | 32.000 | 4.40 | 0.00 | 38.40 | 4.17 |
5997 | 8258 | 7.505258 | AGCAAAATTTGGTTTATACTTGTGGT | 58.495 | 30.769 | 4.40 | 0.00 | 38.40 | 4.16 |
5998 | 8259 | 7.440856 | AGCAAAATTTGGTTTATACTTGTGGTG | 59.559 | 33.333 | 4.40 | 0.00 | 38.40 | 4.17 |
6005 | 8266 | 8.556213 | TTGGTTTATACTTGTGGTGTTAGATC | 57.444 | 34.615 | 0.00 | 0.00 | 0.00 | 2.75 |
6011 | 8272 | 2.448926 | TGTGGTGTTAGATCCGTGTG | 57.551 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
6155 | 8417 | 7.843482 | TCGTATGTTTTATTGCGTTATACTGG | 58.157 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
6156 | 8418 | 6.572254 | CGTATGTTTTATTGCGTTATACTGGC | 59.428 | 38.462 | 0.00 | 0.00 | 0.00 | 4.85 |
6162 | 8424 | 1.588139 | GCGTTATACTGGCGCGACT | 60.588 | 57.895 | 15.80 | 0.00 | 41.70 | 4.18 |
6360 | 8634 | 2.860735 | GACTATCTGGCGTGTTCATGAC | 59.139 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
6426 | 8708 | 0.685097 | TCTAGACCCTGTGCAACCAC | 59.315 | 55.000 | 0.00 | 0.00 | 42.40 | 4.16 |
6467 | 8749 | 6.402222 | TGCTTAACAAAGTGGTCACATTTTT | 58.598 | 32.000 | 3.82 | 0.58 | 34.74 | 1.94 |
6535 | 8817 | 1.299541 | CTGACGCTTGTGTTCCACTT | 58.700 | 50.000 | 0.00 | 0.00 | 35.11 | 3.16 |
6652 | 8934 | 3.027412 | ACAGTTGATAGACGAGATGCCT | 58.973 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
6678 | 8960 | 7.358770 | AGTGATAATGAGCAGAATGTACTCT | 57.641 | 36.000 | 0.00 | 0.00 | 39.31 | 3.24 |
6952 | 9246 | 5.951747 | TGGCATAATATATTTCCTCTTGGGC | 59.048 | 40.000 | 2.68 | 0.00 | 34.39 | 5.36 |
6966 | 9260 | 5.428457 | TCCTCTTGGGCTATAACAATTCTGA | 59.572 | 40.000 | 0.00 | 0.00 | 34.39 | 3.27 |
6970 | 9264 | 7.999679 | TCTTGGGCTATAACAATTCTGATTTG | 58.000 | 34.615 | 9.96 | 9.96 | 0.00 | 2.32 |
6971 | 9265 | 7.833682 | TCTTGGGCTATAACAATTCTGATTTGA | 59.166 | 33.333 | 16.62 | 0.00 | 0.00 | 2.69 |
6972 | 9266 | 7.953005 | TGGGCTATAACAATTCTGATTTGAA | 57.047 | 32.000 | 16.62 | 6.84 | 0.00 | 2.69 |
6973 | 9267 | 7.771183 | TGGGCTATAACAATTCTGATTTGAAC | 58.229 | 34.615 | 16.62 | 2.59 | 0.00 | 3.18 |
6974 | 9268 | 7.395772 | TGGGCTATAACAATTCTGATTTGAACA | 59.604 | 33.333 | 16.62 | 4.32 | 0.00 | 3.18 |
6975 | 9269 | 8.416329 | GGGCTATAACAATTCTGATTTGAACAT | 58.584 | 33.333 | 16.62 | 9.71 | 0.00 | 2.71 |
6976 | 9270 | 9.807649 | GGCTATAACAATTCTGATTTGAACATT | 57.192 | 29.630 | 16.62 | 5.56 | 0.00 | 2.71 |
6982 | 9276 | 8.945481 | ACAATTCTGATTTGAACATTTTGTCA | 57.055 | 26.923 | 16.62 | 0.00 | 0.00 | 3.58 |
6983 | 9277 | 9.381033 | ACAATTCTGATTTGAACATTTTGTCAA | 57.619 | 25.926 | 16.62 | 0.00 | 0.00 | 3.18 |
7037 | 9331 | 7.406031 | AGATGCAACTGATTTCAAGATTGAT | 57.594 | 32.000 | 0.00 | 0.00 | 37.00 | 2.57 |
7038 | 9332 | 7.837863 | AGATGCAACTGATTTCAAGATTGATT | 58.162 | 30.769 | 0.00 | 0.00 | 37.00 | 2.57 |
7039 | 9333 | 8.963725 | AGATGCAACTGATTTCAAGATTGATTA | 58.036 | 29.630 | 0.00 | 0.00 | 37.00 | 1.75 |
7070 | 9364 | 4.892934 | TGTAGATTGGCAAAAGAAACCTGT | 59.107 | 37.500 | 3.01 | 0.00 | 0.00 | 4.00 |
7076 | 9370 | 7.992608 | AGATTGGCAAAAGAAACCTGTTTTAAT | 59.007 | 29.630 | 3.01 | 0.00 | 32.11 | 1.40 |
7082 | 9376 | 7.625185 | GCAAAAGAAACCTGTTTTAATTGTGCA | 60.625 | 33.333 | 17.47 | 0.00 | 35.91 | 4.57 |
7093 | 9387 | 4.734398 | TTAATTGTGCAGGGGCTAATTG | 57.266 | 40.909 | 0.00 | 0.00 | 41.91 | 2.32 |
7128 | 9422 | 0.107263 | TCTTTGGTGCACTGCTGACA | 60.107 | 50.000 | 17.98 | 1.49 | 0.00 | 3.58 |
7144 | 9444 | 1.939934 | TGACAAAAGTGCTTGGTCTCG | 59.060 | 47.619 | 14.04 | 0.00 | 32.36 | 4.04 |
7167 | 9467 | 2.100087 | ACGAAAAATTTGGGTGAGCGTT | 59.900 | 40.909 | 0.00 | 0.00 | 0.00 | 4.84 |
7175 | 9475 | 1.522668 | TGGGTGAGCGTTTGATTCAG | 58.477 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
7176 | 9476 | 1.202758 | TGGGTGAGCGTTTGATTCAGT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
7177 | 9477 | 1.197721 | GGGTGAGCGTTTGATTCAGTG | 59.802 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
7178 | 9478 | 2.143122 | GGTGAGCGTTTGATTCAGTGA | 58.857 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
7179 | 9479 | 2.096218 | GGTGAGCGTTTGATTCAGTGAC | 60.096 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
7180 | 9480 | 2.543848 | GTGAGCGTTTGATTCAGTGACA | 59.456 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
7181 | 9481 | 2.802247 | TGAGCGTTTGATTCAGTGACAG | 59.198 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
7182 | 9482 | 2.802816 | GAGCGTTTGATTCAGTGACAGT | 59.197 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
7183 | 9483 | 3.987868 | GAGCGTTTGATTCAGTGACAGTA | 59.012 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
7184 | 9484 | 4.569943 | AGCGTTTGATTCAGTGACAGTAT | 58.430 | 39.130 | 0.00 | 0.00 | 0.00 | 2.12 |
7185 | 9485 | 5.720202 | AGCGTTTGATTCAGTGACAGTATA | 58.280 | 37.500 | 0.00 | 0.00 | 0.00 | 1.47 |
7186 | 9486 | 5.577164 | AGCGTTTGATTCAGTGACAGTATAC | 59.423 | 40.000 | 0.00 | 0.00 | 0.00 | 1.47 |
7187 | 9487 | 5.498700 | GCGTTTGATTCAGTGACAGTATACG | 60.499 | 44.000 | 0.00 | 0.57 | 0.00 | 3.06 |
7188 | 9488 | 5.571741 | CGTTTGATTCAGTGACAGTATACGT | 59.428 | 40.000 | 0.00 | 0.00 | 0.00 | 3.57 |
7189 | 9489 | 6.089016 | CGTTTGATTCAGTGACAGTATACGTT | 59.911 | 38.462 | 0.00 | 0.00 | 0.00 | 3.99 |
7190 | 9490 | 7.358931 | CGTTTGATTCAGTGACAGTATACGTTT | 60.359 | 37.037 | 0.00 | 0.00 | 0.00 | 3.60 |
7191 | 9491 | 6.944557 | TGATTCAGTGACAGTATACGTTTG | 57.055 | 37.500 | 0.00 | 0.00 | 0.00 | 2.93 |
7192 | 9492 | 6.683715 | TGATTCAGTGACAGTATACGTTTGA | 58.316 | 36.000 | 0.00 | 3.01 | 0.00 | 2.69 |
7193 | 9493 | 7.320399 | TGATTCAGTGACAGTATACGTTTGAT | 58.680 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
7194 | 9494 | 7.817478 | TGATTCAGTGACAGTATACGTTTGATT | 59.183 | 33.333 | 0.00 | 2.74 | 0.00 | 2.57 |
7195 | 9495 | 7.576750 | TTCAGTGACAGTATACGTTTGATTC | 57.423 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
7196 | 9496 | 6.683715 | TCAGTGACAGTATACGTTTGATTCA | 58.316 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
7197 | 9497 | 6.806739 | TCAGTGACAGTATACGTTTGATTCAG | 59.193 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
7198 | 9498 | 6.586463 | CAGTGACAGTATACGTTTGATTCAGT | 59.414 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
7199 | 9499 | 6.586463 | AGTGACAGTATACGTTTGATTCAGTG | 59.414 | 38.462 | 0.00 | 0.00 | 0.00 | 3.66 |
7200 | 9500 | 6.584942 | GTGACAGTATACGTTTGATTCAGTGA | 59.415 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
7201 | 9501 | 6.584942 | TGACAGTATACGTTTGATTCAGTGAC | 59.415 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
7202 | 9502 | 6.452242 | ACAGTATACGTTTGATTCAGTGACA | 58.548 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
7203 | 9503 | 6.586463 | ACAGTATACGTTTGATTCAGTGACAG | 59.414 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
7204 | 9504 | 6.586463 | CAGTATACGTTTGATTCAGTGACAGT | 59.414 | 38.462 | 0.00 | 0.00 | 0.00 | 3.55 |
7205 | 9505 | 7.753580 | CAGTATACGTTTGATTCAGTGACAGTA | 59.246 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
7206 | 9506 | 8.467598 | AGTATACGTTTGATTCAGTGACAGTAT | 58.532 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
7207 | 9507 | 9.726232 | GTATACGTTTGATTCAGTGACAGTATA | 57.274 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
7208 | 9508 | 6.946229 | ACGTTTGATTCAGTGACAGTATAC | 57.054 | 37.500 | 0.00 | 0.00 | 0.00 | 1.47 |
7245 | 9545 | 8.356657 | TCTTTCCAAGATTTCGAAATGCTAAAA | 58.643 | 29.630 | 27.27 | 17.37 | 31.20 | 1.52 |
7256 | 9556 | 9.607285 | TTTCGAAATGCTAAAAACTGTCTAATC | 57.393 | 29.630 | 6.47 | 0.00 | 0.00 | 1.75 |
7268 | 9568 | 8.786826 | AAAACTGTCTAATCCATAATCGACAA | 57.213 | 30.769 | 0.00 | 0.00 | 31.35 | 3.18 |
7269 | 9569 | 8.786826 | AAACTGTCTAATCCATAATCGACAAA | 57.213 | 30.769 | 0.00 | 0.00 | 31.35 | 2.83 |
7324 | 9626 | 1.283321 | AGATGGAGCTTGTTTCCCCTC | 59.717 | 52.381 | 0.00 | 0.00 | 33.62 | 4.30 |
7325 | 9627 | 1.004745 | GATGGAGCTTGTTTCCCCTCA | 59.995 | 52.381 | 0.00 | 0.00 | 33.62 | 3.86 |
7326 | 9628 | 0.401738 | TGGAGCTTGTTTCCCCTCAG | 59.598 | 55.000 | 0.00 | 0.00 | 33.62 | 3.35 |
7327 | 9629 | 0.693049 | GGAGCTTGTTTCCCCTCAGA | 59.307 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
7328 | 9630 | 1.339535 | GGAGCTTGTTTCCCCTCAGAG | 60.340 | 57.143 | 0.00 | 0.00 | 0.00 | 3.35 |
7329 | 9631 | 1.625818 | GAGCTTGTTTCCCCTCAGAGA | 59.374 | 52.381 | 0.00 | 0.00 | 0.00 | 3.10 |
7330 | 9632 | 2.039084 | GAGCTTGTTTCCCCTCAGAGAA | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
7331 | 9633 | 2.039613 | AGCTTGTTTCCCCTCAGAGAAG | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
7332 | 9634 | 2.877708 | GCTTGTTTCCCCTCAGAGAAGG | 60.878 | 54.545 | 0.00 | 0.00 | 36.08 | 3.46 |
7333 | 9635 | 0.693049 | TGTTTCCCCTCAGAGAAGGC | 59.307 | 55.000 | 0.00 | 0.00 | 34.88 | 4.35 |
7334 | 9636 | 0.988063 | GTTTCCCCTCAGAGAAGGCT | 59.012 | 55.000 | 0.00 | 0.00 | 34.88 | 4.58 |
7335 | 9637 | 2.188817 | GTTTCCCCTCAGAGAAGGCTA | 58.811 | 52.381 | 0.00 | 0.00 | 34.88 | 3.93 |
7336 | 9638 | 1.867363 | TTCCCCTCAGAGAAGGCTAC | 58.133 | 55.000 | 0.00 | 0.00 | 34.88 | 3.58 |
7337 | 9639 | 1.011595 | TCCCCTCAGAGAAGGCTACT | 58.988 | 55.000 | 0.00 | 0.00 | 34.88 | 2.57 |
7338 | 9640 | 1.118838 | CCCCTCAGAGAAGGCTACTG | 58.881 | 60.000 | 0.00 | 9.10 | 34.88 | 2.74 |
7339 | 9641 | 1.342474 | CCCCTCAGAGAAGGCTACTGA | 60.342 | 57.143 | 14.80 | 14.80 | 38.16 | 3.41 |
7340 | 9642 | 2.461695 | CCCTCAGAGAAGGCTACTGAA | 58.538 | 52.381 | 15.83 | 5.14 | 39.60 | 3.02 |
7341 | 9643 | 3.037549 | CCCTCAGAGAAGGCTACTGAAT | 58.962 | 50.000 | 15.83 | 0.00 | 39.60 | 2.57 |
7342 | 9644 | 3.181467 | CCCTCAGAGAAGGCTACTGAATG | 60.181 | 52.174 | 15.83 | 11.45 | 39.60 | 2.67 |
7343 | 9645 | 3.703556 | CCTCAGAGAAGGCTACTGAATGA | 59.296 | 47.826 | 15.83 | 4.42 | 39.60 | 2.57 |
7344 | 9646 | 4.441356 | CCTCAGAGAAGGCTACTGAATGAC | 60.441 | 50.000 | 15.83 | 0.00 | 39.60 | 3.06 |
7345 | 9647 | 4.348486 | TCAGAGAAGGCTACTGAATGACT | 58.652 | 43.478 | 13.74 | 0.00 | 37.66 | 3.41 |
7346 | 9648 | 5.510430 | TCAGAGAAGGCTACTGAATGACTA | 58.490 | 41.667 | 13.74 | 0.00 | 37.66 | 2.59 |
7347 | 9649 | 5.592282 | TCAGAGAAGGCTACTGAATGACTAG | 59.408 | 44.000 | 13.74 | 0.00 | 37.66 | 2.57 |
7348 | 9650 | 5.359576 | CAGAGAAGGCTACTGAATGACTAGT | 59.640 | 44.000 | 0.00 | 0.00 | 34.07 | 2.57 |
7349 | 9651 | 6.544197 | CAGAGAAGGCTACTGAATGACTAGTA | 59.456 | 42.308 | 0.00 | 0.00 | 34.07 | 1.82 |
7350 | 9652 | 7.230510 | CAGAGAAGGCTACTGAATGACTAGTAT | 59.769 | 40.741 | 0.00 | 0.00 | 34.07 | 2.12 |
7351 | 9653 | 7.447238 | AGAGAAGGCTACTGAATGACTAGTATC | 59.553 | 40.741 | 0.00 | 0.00 | 0.00 | 2.24 |
7352 | 9654 | 7.294584 | AGAAGGCTACTGAATGACTAGTATCT | 58.705 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
7353 | 9655 | 7.447238 | AGAAGGCTACTGAATGACTAGTATCTC | 59.553 | 40.741 | 0.00 | 0.00 | 0.00 | 2.75 |
7354 | 9656 | 6.007703 | AGGCTACTGAATGACTAGTATCTCC | 58.992 | 44.000 | 0.00 | 0.00 | 0.00 | 3.71 |
7355 | 9657 | 6.007703 | GGCTACTGAATGACTAGTATCTCCT | 58.992 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
7356 | 9658 | 7.017750 | AGGCTACTGAATGACTAGTATCTCCTA | 59.982 | 40.741 | 0.00 | 0.00 | 29.60 | 2.94 |
7357 | 9659 | 7.832187 | GGCTACTGAATGACTAGTATCTCCTAT | 59.168 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
7358 | 9660 | 8.889717 | GCTACTGAATGACTAGTATCTCCTATC | 58.110 | 40.741 | 0.00 | 0.00 | 0.00 | 2.08 |
7359 | 9661 | 9.391006 | CTACTGAATGACTAGTATCTCCTATCC | 57.609 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
7360 | 9662 | 7.760607 | ACTGAATGACTAGTATCTCCTATCCA | 58.239 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
7361 | 9663 | 8.228206 | ACTGAATGACTAGTATCTCCTATCCAA | 58.772 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
7362 | 9664 | 9.083422 | CTGAATGACTAGTATCTCCTATCCAAA | 57.917 | 37.037 | 0.00 | 0.00 | 0.00 | 3.28 |
7363 | 9665 | 9.607333 | TGAATGACTAGTATCTCCTATCCAAAT | 57.393 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
7372 | 9674 | 8.361139 | AGTATCTCCTATCCAAATTAGTTGACG | 58.639 | 37.037 | 0.00 | 0.00 | 39.87 | 4.35 |
7373 | 9675 | 5.357257 | TCTCCTATCCAAATTAGTTGACGC | 58.643 | 41.667 | 0.00 | 0.00 | 39.87 | 5.19 |
7374 | 9676 | 5.092554 | TCCTATCCAAATTAGTTGACGCA | 57.907 | 39.130 | 0.00 | 0.00 | 39.87 | 5.24 |
7375 | 9677 | 5.116180 | TCCTATCCAAATTAGTTGACGCAG | 58.884 | 41.667 | 0.00 | 0.00 | 39.87 | 5.18 |
7376 | 9678 | 3.764885 | ATCCAAATTAGTTGACGCAGC | 57.235 | 42.857 | 0.00 | 0.00 | 39.87 | 5.25 |
7377 | 9679 | 2.778299 | TCCAAATTAGTTGACGCAGCT | 58.222 | 42.857 | 0.00 | 2.34 | 39.87 | 4.24 |
7378 | 9680 | 2.742053 | TCCAAATTAGTTGACGCAGCTC | 59.258 | 45.455 | 0.00 | 0.00 | 39.87 | 4.09 |
7379 | 9681 | 2.159517 | CCAAATTAGTTGACGCAGCTCC | 60.160 | 50.000 | 0.00 | 0.00 | 39.87 | 4.70 |
7380 | 9682 | 1.359848 | AATTAGTTGACGCAGCTCCG | 58.640 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
7381 | 9683 | 0.530744 | ATTAGTTGACGCAGCTCCGA | 59.469 | 50.000 | 2.80 | 0.00 | 0.00 | 4.55 |
7382 | 9684 | 0.530744 | TTAGTTGACGCAGCTCCGAT | 59.469 | 50.000 | 2.80 | 0.00 | 0.00 | 4.18 |
7383 | 9685 | 1.385528 | TAGTTGACGCAGCTCCGATA | 58.614 | 50.000 | 2.80 | 0.00 | 0.00 | 2.92 |
7384 | 9686 | 0.179134 | AGTTGACGCAGCTCCGATAC | 60.179 | 55.000 | 2.80 | 0.00 | 0.00 | 2.24 |
7385 | 9687 | 0.457853 | GTTGACGCAGCTCCGATACA | 60.458 | 55.000 | 2.80 | 0.00 | 0.00 | 2.29 |
7386 | 9688 | 0.245266 | TTGACGCAGCTCCGATACAA | 59.755 | 50.000 | 2.80 | 4.52 | 0.00 | 2.41 |
7387 | 9689 | 0.457853 | TGACGCAGCTCCGATACAAC | 60.458 | 55.000 | 2.80 | 0.00 | 0.00 | 3.32 |
7388 | 9690 | 0.457853 | GACGCAGCTCCGATACAACA | 60.458 | 55.000 | 2.80 | 0.00 | 0.00 | 3.33 |
7389 | 9691 | 0.175760 | ACGCAGCTCCGATACAACAT | 59.824 | 50.000 | 2.80 | 0.00 | 0.00 | 2.71 |
7390 | 9692 | 1.290203 | CGCAGCTCCGATACAACATT | 58.710 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
7391 | 9693 | 1.665679 | CGCAGCTCCGATACAACATTT | 59.334 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
7392 | 9694 | 2.095853 | CGCAGCTCCGATACAACATTTT | 59.904 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
7393 | 9695 | 3.308595 | CGCAGCTCCGATACAACATTTTA | 59.691 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
7394 | 9696 | 4.024893 | CGCAGCTCCGATACAACATTTTAT | 60.025 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
7395 | 9697 | 5.207768 | GCAGCTCCGATACAACATTTTATG | 58.792 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
7396 | 9698 | 5.751680 | CAGCTCCGATACAACATTTTATGG | 58.248 | 41.667 | 0.00 | 0.00 | 33.60 | 2.74 |
7397 | 9699 | 5.527214 | CAGCTCCGATACAACATTTTATGGA | 59.473 | 40.000 | 0.00 | 0.00 | 33.60 | 3.41 |
7398 | 9700 | 5.760253 | AGCTCCGATACAACATTTTATGGAG | 59.240 | 40.000 | 0.18 | 0.18 | 42.58 | 3.86 |
7399 | 9701 | 5.527582 | GCTCCGATACAACATTTTATGGAGT | 59.472 | 40.000 | 6.34 | 0.00 | 41.90 | 3.85 |
7400 | 9702 | 6.704493 | GCTCCGATACAACATTTTATGGAGTA | 59.296 | 38.462 | 6.34 | 0.00 | 41.90 | 2.59 |
7401 | 9703 | 7.387948 | GCTCCGATACAACATTTTATGGAGTAT | 59.612 | 37.037 | 6.34 | 0.00 | 41.90 | 2.12 |
7402 | 9704 | 8.827177 | TCCGATACAACATTTTATGGAGTATC | 57.173 | 34.615 | 15.91 | 15.91 | 41.94 | 2.24 |
7403 | 9705 | 8.425703 | TCCGATACAACATTTTATGGAGTATCA | 58.574 | 33.333 | 20.75 | 9.61 | 43.53 | 2.15 |
7404 | 9706 | 9.219603 | CCGATACAACATTTTATGGAGTATCAT | 57.780 | 33.333 | 20.75 | 0.00 | 43.53 | 2.45 |
7446 | 9748 | 9.612066 | ATTTGTGTGATTTTTAGTTCAAATGGT | 57.388 | 25.926 | 0.00 | 0.00 | 34.47 | 3.55 |
7447 | 9749 | 8.641499 | TTGTGTGATTTTTAGTTCAAATGGTC | 57.359 | 30.769 | 0.00 | 0.00 | 0.00 | 4.02 |
7448 | 9750 | 7.206687 | TGTGTGATTTTTAGTTCAAATGGTCC | 58.793 | 34.615 | 0.00 | 0.00 | 0.00 | 4.46 |
7449 | 9751 | 7.147828 | TGTGTGATTTTTAGTTCAAATGGTCCA | 60.148 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
7450 | 9752 | 7.872483 | GTGTGATTTTTAGTTCAAATGGTCCAT | 59.128 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
7451 | 9753 | 8.428063 | TGTGATTTTTAGTTCAAATGGTCCATT | 58.572 | 29.630 | 11.59 | 11.59 | 35.39 | 3.16 |
7452 | 9754 | 8.925700 | GTGATTTTTAGTTCAAATGGTCCATTC | 58.074 | 33.333 | 17.60 | 5.31 | 32.43 | 2.67 |
7453 | 9755 | 8.646004 | TGATTTTTAGTTCAAATGGTCCATTCA | 58.354 | 29.630 | 17.60 | 4.92 | 32.43 | 2.57 |
7454 | 9756 | 9.487790 | GATTTTTAGTTCAAATGGTCCATTCAA | 57.512 | 29.630 | 17.60 | 10.60 | 32.43 | 2.69 |
7455 | 9757 | 9.844257 | ATTTTTAGTTCAAATGGTCCATTCAAA | 57.156 | 25.926 | 17.60 | 11.65 | 32.43 | 2.69 |
7456 | 9758 | 8.655651 | TTTTAGTTCAAATGGTCCATTCAAAC | 57.344 | 30.769 | 22.76 | 22.76 | 32.43 | 2.93 |
7457 | 9759 | 5.867903 | AGTTCAAATGGTCCATTCAAACA | 57.132 | 34.783 | 27.46 | 9.76 | 34.02 | 2.83 |
7458 | 9760 | 5.846203 | AGTTCAAATGGTCCATTCAAACAG | 58.154 | 37.500 | 27.46 | 13.51 | 34.02 | 3.16 |
7459 | 9761 | 5.363580 | AGTTCAAATGGTCCATTCAAACAGT | 59.636 | 36.000 | 27.46 | 15.29 | 34.02 | 3.55 |
7460 | 9762 | 6.549364 | AGTTCAAATGGTCCATTCAAACAGTA | 59.451 | 34.615 | 27.46 | 7.77 | 34.02 | 2.74 |
7461 | 9763 | 6.325919 | TCAAATGGTCCATTCAAACAGTAC | 57.674 | 37.500 | 17.60 | 0.00 | 32.43 | 2.73 |
7462 | 9764 | 5.242838 | TCAAATGGTCCATTCAAACAGTACC | 59.757 | 40.000 | 17.60 | 0.00 | 32.43 | 3.34 |
7463 | 9765 | 3.866703 | TGGTCCATTCAAACAGTACCA | 57.133 | 42.857 | 0.00 | 0.00 | 33.30 | 3.25 |
7464 | 9766 | 4.380843 | TGGTCCATTCAAACAGTACCAT | 57.619 | 40.909 | 0.00 | 0.00 | 30.84 | 3.55 |
7465 | 9767 | 5.506730 | TGGTCCATTCAAACAGTACCATA | 57.493 | 39.130 | 0.00 | 0.00 | 30.84 | 2.74 |
7466 | 9768 | 5.882040 | TGGTCCATTCAAACAGTACCATAA | 58.118 | 37.500 | 0.00 | 0.00 | 30.84 | 1.90 |
7467 | 9769 | 6.307776 | TGGTCCATTCAAACAGTACCATAAA | 58.692 | 36.000 | 0.00 | 0.00 | 30.84 | 1.40 |
7468 | 9770 | 6.207810 | TGGTCCATTCAAACAGTACCATAAAC | 59.792 | 38.462 | 0.00 | 0.00 | 30.84 | 2.01 |
7469 | 9771 | 6.433093 | GGTCCATTCAAACAGTACCATAAACT | 59.567 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
7470 | 9772 | 7.608761 | GGTCCATTCAAACAGTACCATAAACTA | 59.391 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
7471 | 9773 | 8.665685 | GTCCATTCAAACAGTACCATAAACTAG | 58.334 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
7472 | 9774 | 8.598916 | TCCATTCAAACAGTACCATAAACTAGA | 58.401 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
7473 | 9775 | 8.883731 | CCATTCAAACAGTACCATAAACTAGAG | 58.116 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
7474 | 9776 | 9.436957 | CATTCAAACAGTACCATAAACTAGAGT | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
7476 | 9778 | 8.827177 | TCAAACAGTACCATAAACTAGAGTTG | 57.173 | 34.615 | 0.00 | 0.00 | 38.44 | 3.16 |
7477 | 9779 | 8.426489 | TCAAACAGTACCATAAACTAGAGTTGT | 58.574 | 33.333 | 0.00 | 0.00 | 38.44 | 3.32 |
7478 | 9780 | 8.495949 | CAAACAGTACCATAAACTAGAGTTGTG | 58.504 | 37.037 | 0.00 | 0.00 | 38.44 | 3.33 |
7479 | 9781 | 6.698380 | ACAGTACCATAAACTAGAGTTGTGG | 58.302 | 40.000 | 18.53 | 18.53 | 43.97 | 4.17 |
7480 | 9782 | 5.581085 | CAGTACCATAAACTAGAGTTGTGGC | 59.419 | 44.000 | 19.44 | 9.85 | 43.05 | 5.01 |
7481 | 9783 | 3.951663 | ACCATAAACTAGAGTTGTGGCC | 58.048 | 45.455 | 19.44 | 0.00 | 43.05 | 5.36 |
7482 | 9784 | 3.329520 | ACCATAAACTAGAGTTGTGGCCA | 59.670 | 43.478 | 19.44 | 0.00 | 43.05 | 5.36 |
7483 | 9785 | 4.018415 | ACCATAAACTAGAGTTGTGGCCAT | 60.018 | 41.667 | 9.72 | 0.00 | 43.05 | 4.40 |
7484 | 9786 | 5.190925 | ACCATAAACTAGAGTTGTGGCCATA | 59.809 | 40.000 | 9.72 | 1.91 | 43.05 | 2.74 |
7485 | 9787 | 6.119536 | CCATAAACTAGAGTTGTGGCCATAA | 58.880 | 40.000 | 9.72 | 10.67 | 37.61 | 1.90 |
7486 | 9788 | 6.601613 | CCATAAACTAGAGTTGTGGCCATAAA | 59.398 | 38.462 | 17.37 | 8.16 | 37.61 | 1.40 |
7487 | 9789 | 7.285401 | CCATAAACTAGAGTTGTGGCCATAAAT | 59.715 | 37.037 | 17.37 | 16.38 | 37.61 | 1.40 |
7488 | 9790 | 6.515272 | AAACTAGAGTTGTGGCCATAAATG | 57.485 | 37.500 | 20.32 | 8.32 | 38.44 | 2.32 |
7489 | 9791 | 3.947834 | ACTAGAGTTGTGGCCATAAATGC | 59.052 | 43.478 | 20.32 | 11.18 | 0.00 | 3.56 |
7490 | 9792 | 2.806434 | AGAGTTGTGGCCATAAATGCA | 58.194 | 42.857 | 20.32 | 3.33 | 0.00 | 3.96 |
7491 | 9793 | 3.368248 | AGAGTTGTGGCCATAAATGCAT | 58.632 | 40.909 | 20.32 | 3.02 | 0.00 | 3.96 |
7492 | 9794 | 3.131577 | AGAGTTGTGGCCATAAATGCATG | 59.868 | 43.478 | 20.32 | 0.00 | 0.00 | 4.06 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
44 | 45 | 3.887621 | CGGAGGAAAACCTCAGATACA | 57.112 | 47.619 | 16.44 | 0.00 | 38.48 | 2.29 |
74 | 75 | 0.547471 | TGTGCTCTTCCTCCCCATGA | 60.547 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
76 | 77 | 0.842635 | GATGTGCTCTTCCTCCCCAT | 59.157 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
86 | 90 | 0.881796 | TCGTCGTTGAGATGTGCTCT | 59.118 | 50.000 | 0.00 | 0.00 | 44.27 | 4.09 |
94 | 98 | 1.081641 | GGAAGCGTCGTCGTTGAGA | 60.082 | 57.895 | 3.66 | 0.00 | 39.49 | 3.27 |
151 | 155 | 5.763204 | TCTTTGCTTCGACCTTCATTAAAGT | 59.237 | 36.000 | 0.00 | 0.00 | 32.69 | 2.66 |
155 | 159 | 6.655003 | AGAAATCTTTGCTTCGACCTTCATTA | 59.345 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
156 | 160 | 5.474876 | AGAAATCTTTGCTTCGACCTTCATT | 59.525 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
164 | 168 | 3.007940 | TCCAGGAGAAATCTTTGCTTCGA | 59.992 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
288 | 294 | 2.600731 | CAGGGGGTGGTGTGTGTT | 59.399 | 61.111 | 0.00 | 0.00 | 0.00 | 3.32 |
378 | 387 | 2.252127 | ATCGATTTGGGTGTTGCGCG | 62.252 | 55.000 | 0.00 | 0.00 | 0.00 | 6.86 |
448 | 461 | 2.110213 | TGGGCGAACTTGCTCGTT | 59.890 | 55.556 | 0.00 | 0.00 | 38.54 | 3.85 |
482 | 496 | 2.152016 | GTGGGTGTACTTCTTTGGAGC | 58.848 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
488 | 502 | 0.769247 | GGGTGGTGGGTGTACTTCTT | 59.231 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
494 | 508 | 2.530661 | CTGGGGGTGGTGGGTGTA | 60.531 | 66.667 | 0.00 | 0.00 | 0.00 | 2.90 |
506 | 520 | 3.282157 | CGCAATGATCGGCTGGGG | 61.282 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
549 | 563 | 2.045926 | GCAGATCAACGGCTGGGT | 60.046 | 61.111 | 0.00 | 0.00 | 36.79 | 4.51 |
553 | 567 | 2.510238 | GAGCGCAGATCAACGGCT | 60.510 | 61.111 | 11.47 | 5.12 | 45.47 | 5.52 |
670 | 773 | 2.422231 | CCTCTCACGAGCAGGGGAG | 61.422 | 68.421 | 0.12 | 0.12 | 35.90 | 4.30 |
696 | 799 | 0.371645 | GCAATCCTTTCTCTGCGACG | 59.628 | 55.000 | 0.00 | 0.00 | 0.00 | 5.12 |
698 | 801 | 0.740868 | CGGCAATCCTTTCTCTGCGA | 60.741 | 55.000 | 0.00 | 0.00 | 35.60 | 5.10 |
770 | 873 | 1.418334 | CATCCAATCCTCCCTCTCGT | 58.582 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
796 | 899 | 0.391130 | CAAATCGCCAAGACCTCCGA | 60.391 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
835 | 938 | 3.171388 | GCCGTGATCCCTCCCCAT | 61.171 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
863 | 966 | 4.579869 | TGAACTGAGGAATTAACTGCCTC | 58.420 | 43.478 | 11.34 | 11.34 | 46.60 | 4.70 |
866 | 969 | 7.755373 | GGTTTTATGAACTGAGGAATTAACTGC | 59.245 | 37.037 | 0.00 | 0.00 | 0.00 | 4.40 |
869 | 972 | 7.813645 | ACGGTTTTATGAACTGAGGAATTAAC | 58.186 | 34.615 | 8.96 | 0.00 | 0.00 | 2.01 |
904 | 1007 | 5.358298 | ACGGTTTTATGAAAGAGTCTTGC | 57.642 | 39.130 | 6.06 | 4.78 | 0.00 | 4.01 |
942 | 1045 | 2.757980 | TAAGCCGAGGGGTTTGCCAC | 62.758 | 60.000 | 4.25 | 0.00 | 40.84 | 5.01 |
1010 | 1113 | 1.681486 | GGCGGAGGAGGAGGAAGAAG | 61.681 | 65.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1011 | 1114 | 1.686110 | GGCGGAGGAGGAGGAAGAA | 60.686 | 63.158 | 0.00 | 0.00 | 0.00 | 2.52 |
1012 | 1115 | 2.042843 | GGCGGAGGAGGAGGAAGA | 60.043 | 66.667 | 0.00 | 0.00 | 0.00 | 2.87 |
1133 | 1236 | 4.033251 | TAGGGGGTGGGGTGGGAG | 62.033 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1134 | 1237 | 4.358181 | GTAGGGGGTGGGGTGGGA | 62.358 | 72.222 | 0.00 | 0.00 | 0.00 | 4.37 |
1208 | 1312 | 0.110867 | CGAACAGTCATTCGCGCAAA | 60.111 | 50.000 | 8.75 | 0.00 | 44.37 | 3.68 |
1250 | 1355 | 3.980775 | GCGCACATCAACACAAAAATAGT | 59.019 | 39.130 | 0.30 | 0.00 | 0.00 | 2.12 |
1251 | 1356 | 4.229096 | AGCGCACATCAACACAAAAATAG | 58.771 | 39.130 | 11.47 | 0.00 | 0.00 | 1.73 |
1252 | 1357 | 4.235939 | AGCGCACATCAACACAAAAATA | 57.764 | 36.364 | 11.47 | 0.00 | 0.00 | 1.40 |
1253 | 1358 | 3.096489 | AGCGCACATCAACACAAAAAT | 57.904 | 38.095 | 11.47 | 0.00 | 0.00 | 1.82 |
1293 | 1398 | 6.016527 | TCTGGTACCAAGCTAACTATACATCG | 60.017 | 42.308 | 17.11 | 0.00 | 0.00 | 3.84 |
1304 | 1431 | 2.895404 | AGTTCGTTCTGGTACCAAGCTA | 59.105 | 45.455 | 17.11 | 0.00 | 0.00 | 3.32 |
1313 | 1440 | 4.655527 | CGAGCAGTTCGTTCTGGT | 57.344 | 55.556 | 12.24 | 12.24 | 46.66 | 4.00 |
1475 | 1602 | 0.953471 | TGATGTTTGCGTCCCCGAAG | 60.953 | 55.000 | 0.00 | 0.00 | 35.63 | 3.79 |
1535 | 1662 | 3.391665 | CTGGGCGAGCGAGGGATTT | 62.392 | 63.158 | 0.00 | 0.00 | 0.00 | 2.17 |
1582 | 1709 | 7.030165 | GGAGGACACGATGATAATAGTATGTG | 58.970 | 42.308 | 0.00 | 0.00 | 0.00 | 3.21 |
1583 | 1710 | 6.948886 | AGGAGGACACGATGATAATAGTATGT | 59.051 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
1585 | 1712 | 6.603997 | GGAGGAGGACACGATGATAATAGTAT | 59.396 | 42.308 | 0.00 | 0.00 | 0.00 | 2.12 |
1721 | 1870 | 1.734163 | ATAGCTTTCCGGTTTCCACG | 58.266 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2150 | 2328 | 3.058708 | GGTGTAGGCTTCCGTTTTGTAAC | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 2.50 |
2161 | 2339 | 4.081642 | TGACAAGTCTATGGTGTAGGCTTC | 60.082 | 45.833 | 0.00 | 0.00 | 37.39 | 3.86 |
2206 | 2391 | 6.205853 | TGGTTACACAGTAATGGTAAAAGCAG | 59.794 | 38.462 | 0.00 | 0.00 | 0.00 | 4.24 |
2384 | 2578 | 2.979813 | CTGCAATGTTTCCGCTAACAAC | 59.020 | 45.455 | 4.94 | 0.42 | 41.02 | 3.32 |
2447 | 2642 | 7.707624 | AATGCATAAGTCCTTTCATCTCAAA | 57.292 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2479 | 2674 | 7.536855 | ACATGTTTGCAATTGTTCATGTTTTT | 58.463 | 26.923 | 21.65 | 9.53 | 41.60 | 1.94 |
2537 | 2732 | 5.393124 | TCAAAGCTCATTTATTCGTGCTTG | 58.607 | 37.500 | 0.00 | 0.00 | 40.12 | 4.01 |
2765 | 2964 | 7.345653 | TCAGATCTGGAAGGCTCTTCTTATTTA | 59.654 | 37.037 | 22.42 | 0.00 | 0.00 | 1.40 |
2769 | 2968 | 4.614475 | TCAGATCTGGAAGGCTCTTCTTA | 58.386 | 43.478 | 22.42 | 0.00 | 0.00 | 2.10 |
2807 | 3008 | 2.535012 | TACGGACTTGATTGTGTGCA | 57.465 | 45.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2823 | 3024 | 8.957028 | CATGTGCAATCTTTAATTGGTATTACG | 58.043 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3239 | 4089 | 7.050377 | ACCAGTATATATGTGCATATGCTTCC | 58.950 | 38.462 | 27.13 | 15.61 | 42.66 | 3.46 |
3268 | 4118 | 4.591924 | GGAACGGAGGGAGGATAATCTTTA | 59.408 | 45.833 | 0.00 | 0.00 | 0.00 | 1.85 |
3353 | 4205 | 9.236006 | AGCAAAATGAGTGAACATATACTCTTT | 57.764 | 29.630 | 0.00 | 0.00 | 42.86 | 2.52 |
3354 | 4206 | 8.798859 | AGCAAAATGAGTGAACATATACTCTT | 57.201 | 30.769 | 0.00 | 0.00 | 42.86 | 2.85 |
3441 | 4293 | 8.630037 | ACCCTATCTAATAAAGGAAAATTTGCG | 58.370 | 33.333 | 0.00 | 0.00 | 31.64 | 4.85 |
3517 | 4369 | 6.806751 | AGACAGTTATGTACGCAATAGTGAT | 58.193 | 36.000 | 0.00 | 0.00 | 40.68 | 3.06 |
3542 | 4394 | 7.921786 | TGGTCTTTTGGTCTGAATATAACAG | 57.078 | 36.000 | 0.00 | 0.00 | 36.80 | 3.16 |
3620 | 4480 | 3.002862 | AGCGATAAAAACACTTTGCGACA | 59.997 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
3623 | 4483 | 2.908626 | GGAGCGATAAAAACACTTTGCG | 59.091 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
3684 | 4544 | 9.533253 | CAAAACAAAGTCTCATCCAAACTATTT | 57.467 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3686 | 4546 | 7.014615 | AGCAAAACAAAGTCTCATCCAAACTAT | 59.985 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
3687 | 4547 | 6.321181 | AGCAAAACAAAGTCTCATCCAAACTA | 59.679 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
3689 | 4549 | 5.351458 | AGCAAAACAAAGTCTCATCCAAAC | 58.649 | 37.500 | 0.00 | 0.00 | 0.00 | 2.93 |
3690 | 4550 | 5.596836 | AGCAAAACAAAGTCTCATCCAAA | 57.403 | 34.783 | 0.00 | 0.00 | 0.00 | 3.28 |
3692 | 4552 | 5.596836 | AAAGCAAAACAAAGTCTCATCCA | 57.403 | 34.783 | 0.00 | 0.00 | 0.00 | 3.41 |
3747 | 4614 | 6.072728 | TGCGTTCTTATTATGGTAATCATGGC | 60.073 | 38.462 | 0.00 | 0.00 | 37.30 | 4.40 |
3748 | 4615 | 7.433708 | TGCGTTCTTATTATGGTAATCATGG | 57.566 | 36.000 | 0.00 | 0.00 | 37.30 | 3.66 |
3837 | 4707 | 2.431057 | GGACTCGACCCAATACTGATGT | 59.569 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3840 | 4710 | 2.100197 | CTGGACTCGACCCAATACTGA | 58.900 | 52.381 | 3.67 | 0.00 | 32.53 | 3.41 |
3842 | 4712 | 2.379972 | CTCTGGACTCGACCCAATACT | 58.620 | 52.381 | 3.67 | 0.00 | 32.53 | 2.12 |
3981 | 4963 | 1.679977 | CCCTACCCCGTCTCGTTCA | 60.680 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
4020 | 5002 | 3.373846 | CACCTCCCCCTCCCCCTA | 61.374 | 72.222 | 0.00 | 0.00 | 0.00 | 3.53 |
4030 | 5018 | 1.196012 | CACTACCTCCTTCACCTCCC | 58.804 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4038 | 5026 | 1.625818 | CCAACAGCTCACTACCTCCTT | 59.374 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
4052 | 5040 | 0.460284 | CTACCGTAGCAGCCCAACAG | 60.460 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4053 | 5041 | 0.901114 | TCTACCGTAGCAGCCCAACA | 60.901 | 55.000 | 0.18 | 0.00 | 0.00 | 3.33 |
4081 | 5069 | 3.453679 | GCTCCGAACGCCTCTCCT | 61.454 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
4119 | 5107 | 2.044555 | CAGGTGGCCACTGATGCTG | 61.045 | 63.158 | 33.91 | 26.33 | 38.20 | 4.41 |
4189 | 5177 | 1.060729 | TCCCCACCTCATCGAACAAA | 58.939 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4237 | 5225 | 7.182060 | ACCCCACTTCACATTTACAAATAGAT | 58.818 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
4245 | 5233 | 4.142038 | AGACAACCCCACTTCACATTTAC | 58.858 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
4305 | 5295 | 2.921500 | ATGGTGTGCCTGCCATCCA | 61.921 | 57.895 | 0.00 | 0.00 | 41.24 | 3.41 |
4380 | 5370 | 5.370679 | TGCTCTATTCAGCATTCAGCATTA | 58.629 | 37.500 | 0.00 | 0.00 | 44.73 | 1.90 |
4391 | 5381 | 4.201891 | CCAGAACAACATGCTCTATTCAGC | 60.202 | 45.833 | 0.00 | 0.00 | 40.13 | 4.26 |
4392 | 5382 | 4.201891 | GCCAGAACAACATGCTCTATTCAG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
4395 | 5385 | 3.689347 | TGCCAGAACAACATGCTCTATT | 58.311 | 40.909 | 0.00 | 0.00 | 0.00 | 1.73 |
4397 | 5387 | 2.616256 | CCTGCCAGAACAACATGCTCTA | 60.616 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
4690 | 5716 | 7.003939 | TGATCAACTTAAGCAACATGTATCG | 57.996 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
4754 | 5780 | 4.022849 | AGAGGCAAAGACAAACAGTTATGC | 60.023 | 41.667 | 0.00 | 0.00 | 34.56 | 3.14 |
4874 | 5902 | 4.645921 | GCAAAAGCGCGTGCCCTT | 62.646 | 61.111 | 19.02 | 8.81 | 44.31 | 3.95 |
4955 | 5991 | 4.382040 | GCAGATTGACTACTACTTGCCTCA | 60.382 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
5317 | 6531 | 6.930722 | TGATGCCACAACATATACATCACTAG | 59.069 | 38.462 | 0.00 | 0.00 | 39.05 | 2.57 |
5376 | 6590 | 9.938280 | CATACTCCCTCCGTATCAAAATATAAA | 57.062 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
5710 | 6994 | 3.316308 | CAGCAAGGCAAGTTCAGTAGTTT | 59.684 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
5733 | 7017 | 2.187946 | GTGATGGGCCTCACTCCG | 59.812 | 66.667 | 21.50 | 0.00 | 41.87 | 4.63 |
5736 | 7020 | 4.101448 | GCGGTGATGGGCCTCACT | 62.101 | 66.667 | 25.17 | 2.83 | 44.05 | 3.41 |
5877 | 7163 | 8.739039 | CATCCAAAAATGTGTAGTTTAGATCCA | 58.261 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
5921 | 8169 | 2.572104 | TCTTTTTCCCTGTCCTCCTAGC | 59.428 | 50.000 | 0.00 | 0.00 | 0.00 | 3.42 |
5922 | 8170 | 4.910458 | TTCTTTTTCCCTGTCCTCCTAG | 57.090 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
5923 | 8171 | 4.227527 | GGATTCTTTTTCCCTGTCCTCCTA | 59.772 | 45.833 | 0.00 | 0.00 | 0.00 | 2.94 |
5924 | 8172 | 3.010696 | GGATTCTTTTTCCCTGTCCTCCT | 59.989 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
5925 | 8173 | 3.245264 | TGGATTCTTTTTCCCTGTCCTCC | 60.245 | 47.826 | 0.00 | 0.00 | 31.87 | 4.30 |
5926 | 8174 | 4.013050 | CTGGATTCTTTTTCCCTGTCCTC | 58.987 | 47.826 | 0.00 | 0.00 | 31.87 | 3.71 |
5927 | 8175 | 3.399305 | ACTGGATTCTTTTTCCCTGTCCT | 59.601 | 43.478 | 0.00 | 0.00 | 31.87 | 3.85 |
5928 | 8176 | 3.507622 | CACTGGATTCTTTTTCCCTGTCC | 59.492 | 47.826 | 0.00 | 0.00 | 31.87 | 4.02 |
5966 | 8220 | 8.757164 | AGTATAAACCAAATTTTGCTTAGCAC | 57.243 | 30.769 | 6.34 | 6.28 | 38.71 | 4.40 |
5988 | 8242 | 3.575256 | ACACGGATCTAACACCACAAGTA | 59.425 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
5996 | 8257 | 1.274167 | TCCACCACACGGATCTAACAC | 59.726 | 52.381 | 0.00 | 0.00 | 35.59 | 3.32 |
5997 | 8258 | 1.634960 | TCCACCACACGGATCTAACA | 58.365 | 50.000 | 0.00 | 0.00 | 35.59 | 2.41 |
5998 | 8259 | 2.754946 | TTCCACCACACGGATCTAAC | 57.245 | 50.000 | 0.00 | 0.00 | 35.59 | 2.34 |
6005 | 8266 | 1.001815 | GTTCACATTTCCACCACACGG | 60.002 | 52.381 | 0.00 | 0.00 | 38.77 | 4.94 |
6011 | 8272 | 2.698274 | ACTTTGGGTTCACATTTCCACC | 59.302 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
6155 | 8417 | 0.093705 | CAGAGCTAAACAAGTCGCGC | 59.906 | 55.000 | 0.00 | 0.00 | 0.00 | 6.86 |
6156 | 8418 | 1.698165 | TCAGAGCTAAACAAGTCGCG | 58.302 | 50.000 | 0.00 | 0.00 | 0.00 | 5.87 |
6202 | 8471 | 2.203480 | GGCTGGTGGGCTGAAACA | 60.203 | 61.111 | 0.00 | 0.00 | 37.53 | 2.83 |
6360 | 8634 | 5.338365 | AGTTTAGTACTTACCGAGCAATCG | 58.662 | 41.667 | 0.00 | 0.00 | 31.29 | 3.34 |
6566 | 8848 | 1.414181 | CCGTTCTCACCTAGGCATGAT | 59.586 | 52.381 | 9.30 | 0.00 | 0.00 | 2.45 |
6652 | 8934 | 8.918116 | AGAGTACATTCTGCTCATTATCACTTA | 58.082 | 33.333 | 0.00 | 0.00 | 34.12 | 2.24 |
6678 | 8960 | 9.290988 | TGTACAACTATTCCTGCATTAAGAAAA | 57.709 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
6986 | 9280 | 6.203338 | CAGTAGGCAATGTTCAAAGCATTTTT | 59.797 | 34.615 | 0.00 | 0.00 | 35.03 | 1.94 |
6987 | 9281 | 5.697633 | CAGTAGGCAATGTTCAAAGCATTTT | 59.302 | 36.000 | 0.00 | 0.00 | 35.03 | 1.82 |
6988 | 9282 | 5.221501 | ACAGTAGGCAATGTTCAAAGCATTT | 60.222 | 36.000 | 0.00 | 0.00 | 40.26 | 2.32 |
6989 | 9283 | 4.281688 | ACAGTAGGCAATGTTCAAAGCATT | 59.718 | 37.500 | 0.00 | 0.00 | 37.06 | 3.56 |
6990 | 9284 | 3.828451 | ACAGTAGGCAATGTTCAAAGCAT | 59.172 | 39.130 | 0.00 | 0.00 | 0.00 | 3.79 |
6991 | 9285 | 3.221771 | ACAGTAGGCAATGTTCAAAGCA | 58.778 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
6992 | 9286 | 3.923017 | ACAGTAGGCAATGTTCAAAGC | 57.077 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
6993 | 9287 | 6.676456 | GCATCTACAGTAGGCAATGTTCAAAG | 60.676 | 42.308 | 7.79 | 0.00 | 0.00 | 2.77 |
6994 | 9288 | 5.123820 | GCATCTACAGTAGGCAATGTTCAAA | 59.876 | 40.000 | 7.79 | 0.00 | 0.00 | 2.69 |
6995 | 9289 | 4.635765 | GCATCTACAGTAGGCAATGTTCAA | 59.364 | 41.667 | 7.79 | 0.00 | 0.00 | 2.69 |
6996 | 9290 | 4.191544 | GCATCTACAGTAGGCAATGTTCA | 58.808 | 43.478 | 7.79 | 0.00 | 0.00 | 3.18 |
7037 | 9331 | 8.758829 | TCTTTTGCCAATCTACAGATACTCTAA | 58.241 | 33.333 | 0.00 | 0.00 | 33.73 | 2.10 |
7038 | 9332 | 8.306313 | TCTTTTGCCAATCTACAGATACTCTA | 57.694 | 34.615 | 0.00 | 0.00 | 33.73 | 2.43 |
7039 | 9333 | 7.187824 | TCTTTTGCCAATCTACAGATACTCT | 57.812 | 36.000 | 0.00 | 0.00 | 33.73 | 3.24 |
7070 | 9364 | 5.012561 | ACAATTAGCCCCTGCACAATTAAAA | 59.987 | 36.000 | 0.00 | 0.00 | 41.13 | 1.52 |
7076 | 9370 | 2.008242 | AACAATTAGCCCCTGCACAA | 57.992 | 45.000 | 0.00 | 0.00 | 41.13 | 3.33 |
7082 | 9376 | 4.592778 | ACAAATCACAAACAATTAGCCCCT | 59.407 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
7093 | 9387 | 6.522855 | GCACCAAAGAAAAACAAATCACAAAC | 59.477 | 34.615 | 0.00 | 0.00 | 0.00 | 2.93 |
7128 | 9422 | 3.094386 | TGCGAGACCAAGCACTTTT | 57.906 | 47.368 | 0.00 | 0.00 | 38.59 | 2.27 |
7136 | 9430 | 3.367607 | CAAATTTTTCGTGCGAGACCAA | 58.632 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
7144 | 9444 | 1.792367 | GCTCACCCAAATTTTTCGTGC | 59.208 | 47.619 | 0.00 | 0.00 | 0.00 | 5.34 |
7167 | 9467 | 7.149307 | TCAAACGTATACTGTCACTGAATCAA | 58.851 | 34.615 | 0.56 | 0.00 | 0.00 | 2.57 |
7175 | 9475 | 6.584942 | TCACTGAATCAAACGTATACTGTCAC | 59.415 | 38.462 | 0.56 | 0.00 | 0.00 | 3.67 |
7176 | 9476 | 6.584942 | GTCACTGAATCAAACGTATACTGTCA | 59.415 | 38.462 | 0.56 | 0.00 | 0.00 | 3.58 |
7177 | 9477 | 6.584942 | TGTCACTGAATCAAACGTATACTGTC | 59.415 | 38.462 | 0.56 | 0.00 | 0.00 | 3.51 |
7178 | 9478 | 6.452242 | TGTCACTGAATCAAACGTATACTGT | 58.548 | 36.000 | 0.56 | 0.00 | 0.00 | 3.55 |
7179 | 9479 | 6.586463 | ACTGTCACTGAATCAAACGTATACTG | 59.414 | 38.462 | 0.56 | 0.00 | 0.00 | 2.74 |
7180 | 9480 | 6.688578 | ACTGTCACTGAATCAAACGTATACT | 58.311 | 36.000 | 0.56 | 0.00 | 0.00 | 2.12 |
7181 | 9481 | 6.946229 | ACTGTCACTGAATCAAACGTATAC | 57.054 | 37.500 | 0.00 | 0.00 | 0.00 | 1.47 |
7182 | 9482 | 9.726232 | GTATACTGTCACTGAATCAAACGTATA | 57.274 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
7183 | 9483 | 7.431376 | CGTATACTGTCACTGAATCAAACGTAT | 59.569 | 37.037 | 0.56 | 0.00 | 0.00 | 3.06 |
7184 | 9484 | 6.744082 | CGTATACTGTCACTGAATCAAACGTA | 59.256 | 38.462 | 0.56 | 0.00 | 0.00 | 3.57 |
7185 | 9485 | 5.571741 | CGTATACTGTCACTGAATCAAACGT | 59.428 | 40.000 | 0.56 | 0.00 | 0.00 | 3.99 |
7186 | 9486 | 5.571741 | ACGTATACTGTCACTGAATCAAACG | 59.428 | 40.000 | 0.56 | 0.00 | 0.00 | 3.60 |
7187 | 9487 | 6.669977 | GCACGTATACTGTCACTGAATCAAAC | 60.670 | 42.308 | 0.56 | 0.00 | 0.00 | 2.93 |
7188 | 9488 | 5.347635 | GCACGTATACTGTCACTGAATCAAA | 59.652 | 40.000 | 0.56 | 0.00 | 0.00 | 2.69 |
7189 | 9489 | 4.862574 | GCACGTATACTGTCACTGAATCAA | 59.137 | 41.667 | 0.56 | 0.00 | 0.00 | 2.57 |
7190 | 9490 | 4.421058 | GCACGTATACTGTCACTGAATCA | 58.579 | 43.478 | 0.56 | 0.00 | 0.00 | 2.57 |
7191 | 9491 | 3.482472 | CGCACGTATACTGTCACTGAATC | 59.518 | 47.826 | 0.56 | 0.00 | 0.00 | 2.52 |
7192 | 9492 | 3.435566 | CGCACGTATACTGTCACTGAAT | 58.564 | 45.455 | 0.56 | 0.00 | 0.00 | 2.57 |
7193 | 9493 | 2.414957 | CCGCACGTATACTGTCACTGAA | 60.415 | 50.000 | 0.56 | 0.00 | 0.00 | 3.02 |
7194 | 9494 | 1.131693 | CCGCACGTATACTGTCACTGA | 59.868 | 52.381 | 0.56 | 0.00 | 0.00 | 3.41 |
7195 | 9495 | 1.545759 | CCGCACGTATACTGTCACTG | 58.454 | 55.000 | 0.56 | 0.00 | 0.00 | 3.66 |
7196 | 9496 | 0.179145 | GCCGCACGTATACTGTCACT | 60.179 | 55.000 | 0.56 | 0.00 | 0.00 | 3.41 |
7197 | 9497 | 1.469126 | CGCCGCACGTATACTGTCAC | 61.469 | 60.000 | 0.56 | 0.00 | 36.87 | 3.67 |
7198 | 9498 | 1.226463 | CGCCGCACGTATACTGTCA | 60.226 | 57.895 | 0.56 | 0.00 | 36.87 | 3.58 |
7199 | 9499 | 3.597162 | CGCCGCACGTATACTGTC | 58.403 | 61.111 | 0.56 | 0.00 | 36.87 | 3.51 |
7245 | 9545 | 8.786826 | TTTTGTCGATTATGGATTAGACAGTT | 57.213 | 30.769 | 0.00 | 0.00 | 37.17 | 3.16 |
7287 | 9589 | 7.498570 | AGCTCCATCTTATTGATTTCAGAGTTC | 59.501 | 37.037 | 0.00 | 0.00 | 32.05 | 3.01 |
7324 | 9626 | 4.734398 | AGTCATTCAGTAGCCTTCTCTG | 57.266 | 45.455 | 0.00 | 0.00 | 0.00 | 3.35 |
7325 | 9627 | 5.515106 | ACTAGTCATTCAGTAGCCTTCTCT | 58.485 | 41.667 | 0.00 | 0.00 | 31.69 | 3.10 |
7326 | 9628 | 5.845391 | ACTAGTCATTCAGTAGCCTTCTC | 57.155 | 43.478 | 0.00 | 0.00 | 31.69 | 2.87 |
7327 | 9629 | 7.294584 | AGATACTAGTCATTCAGTAGCCTTCT | 58.705 | 38.462 | 0.00 | 0.00 | 34.87 | 2.85 |
7328 | 9630 | 7.308951 | GGAGATACTAGTCATTCAGTAGCCTTC | 60.309 | 44.444 | 0.00 | 0.00 | 34.87 | 3.46 |
7329 | 9631 | 6.492087 | GGAGATACTAGTCATTCAGTAGCCTT | 59.508 | 42.308 | 0.00 | 0.00 | 34.87 | 4.35 |
7330 | 9632 | 6.007703 | GGAGATACTAGTCATTCAGTAGCCT | 58.992 | 44.000 | 0.00 | 0.00 | 34.87 | 4.58 |
7331 | 9633 | 6.007703 | AGGAGATACTAGTCATTCAGTAGCC | 58.992 | 44.000 | 0.00 | 0.00 | 34.87 | 3.93 |
7332 | 9634 | 8.801882 | ATAGGAGATACTAGTCATTCAGTAGC | 57.198 | 38.462 | 0.00 | 0.00 | 34.60 | 3.58 |
7333 | 9635 | 9.391006 | GGATAGGAGATACTAGTCATTCAGTAG | 57.609 | 40.741 | 0.00 | 0.00 | 34.47 | 2.57 |
7334 | 9636 | 8.891501 | TGGATAGGAGATACTAGTCATTCAGTA | 58.108 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
7335 | 9637 | 7.760607 | TGGATAGGAGATACTAGTCATTCAGT | 58.239 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
7336 | 9638 | 8.642935 | TTGGATAGGAGATACTAGTCATTCAG | 57.357 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
7337 | 9639 | 9.607333 | ATTTGGATAGGAGATACTAGTCATTCA | 57.393 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
7346 | 9648 | 8.361139 | CGTCAACTAATTTGGATAGGAGATACT | 58.639 | 37.037 | 0.00 | 0.00 | 35.69 | 2.12 |
7347 | 9649 | 7.116519 | GCGTCAACTAATTTGGATAGGAGATAC | 59.883 | 40.741 | 0.00 | 0.00 | 35.69 | 2.24 |
7348 | 9650 | 7.152645 | GCGTCAACTAATTTGGATAGGAGATA | 58.847 | 38.462 | 0.00 | 0.00 | 35.69 | 1.98 |
7349 | 9651 | 5.992217 | GCGTCAACTAATTTGGATAGGAGAT | 59.008 | 40.000 | 0.00 | 0.00 | 35.69 | 2.75 |
7350 | 9652 | 5.105106 | TGCGTCAACTAATTTGGATAGGAGA | 60.105 | 40.000 | 0.00 | 0.00 | 35.69 | 3.71 |
7351 | 9653 | 5.116180 | TGCGTCAACTAATTTGGATAGGAG | 58.884 | 41.667 | 0.00 | 0.00 | 35.69 | 3.69 |
7352 | 9654 | 5.092554 | TGCGTCAACTAATTTGGATAGGA | 57.907 | 39.130 | 0.00 | 0.00 | 35.69 | 2.94 |
7353 | 9655 | 4.260784 | GCTGCGTCAACTAATTTGGATAGG | 60.261 | 45.833 | 0.00 | 0.00 | 35.69 | 2.57 |
7354 | 9656 | 4.572389 | AGCTGCGTCAACTAATTTGGATAG | 59.428 | 41.667 | 0.00 | 0.00 | 35.69 | 2.08 |
7355 | 9657 | 4.513442 | AGCTGCGTCAACTAATTTGGATA | 58.487 | 39.130 | 0.00 | 0.00 | 35.69 | 2.59 |
7356 | 9658 | 3.347216 | AGCTGCGTCAACTAATTTGGAT | 58.653 | 40.909 | 0.00 | 0.00 | 35.69 | 3.41 |
7357 | 9659 | 2.742053 | GAGCTGCGTCAACTAATTTGGA | 59.258 | 45.455 | 0.00 | 0.00 | 35.69 | 3.53 |
7358 | 9660 | 2.159517 | GGAGCTGCGTCAACTAATTTGG | 60.160 | 50.000 | 0.00 | 0.00 | 35.69 | 3.28 |
7359 | 9661 | 2.474526 | CGGAGCTGCGTCAACTAATTTG | 60.475 | 50.000 | 20.53 | 0.00 | 36.42 | 2.32 |
7360 | 9662 | 1.732259 | CGGAGCTGCGTCAACTAATTT | 59.268 | 47.619 | 20.53 | 0.00 | 0.00 | 1.82 |
7361 | 9663 | 1.067142 | TCGGAGCTGCGTCAACTAATT | 60.067 | 47.619 | 27.20 | 0.00 | 0.00 | 1.40 |
7362 | 9664 | 0.530744 | TCGGAGCTGCGTCAACTAAT | 59.469 | 50.000 | 27.20 | 0.00 | 0.00 | 1.73 |
7363 | 9665 | 0.530744 | ATCGGAGCTGCGTCAACTAA | 59.469 | 50.000 | 27.20 | 6.44 | 0.00 | 2.24 |
7364 | 9666 | 1.065102 | GTATCGGAGCTGCGTCAACTA | 59.935 | 52.381 | 27.20 | 7.25 | 0.00 | 2.24 |
7365 | 9667 | 0.179134 | GTATCGGAGCTGCGTCAACT | 60.179 | 55.000 | 27.20 | 10.45 | 0.00 | 3.16 |
7366 | 9668 | 0.457853 | TGTATCGGAGCTGCGTCAAC | 60.458 | 55.000 | 27.20 | 21.48 | 0.00 | 3.18 |
7367 | 9669 | 0.245266 | TTGTATCGGAGCTGCGTCAA | 59.755 | 50.000 | 27.20 | 23.98 | 0.00 | 3.18 |
7368 | 9670 | 0.457853 | GTTGTATCGGAGCTGCGTCA | 60.458 | 55.000 | 27.20 | 20.15 | 0.00 | 4.35 |
7369 | 9671 | 0.457853 | TGTTGTATCGGAGCTGCGTC | 60.458 | 55.000 | 27.20 | 17.98 | 0.00 | 5.19 |
7370 | 9672 | 0.175760 | ATGTTGTATCGGAGCTGCGT | 59.824 | 50.000 | 27.20 | 16.53 | 0.00 | 5.24 |
7371 | 9673 | 1.290203 | AATGTTGTATCGGAGCTGCG | 58.710 | 50.000 | 22.84 | 22.84 | 0.00 | 5.18 |
7372 | 9674 | 3.764885 | AAAATGTTGTATCGGAGCTGC | 57.235 | 42.857 | 0.00 | 0.00 | 0.00 | 5.25 |
7373 | 9675 | 5.527214 | TCCATAAAATGTTGTATCGGAGCTG | 59.473 | 40.000 | 0.00 | 0.00 | 0.00 | 4.24 |
7374 | 9676 | 5.680619 | TCCATAAAATGTTGTATCGGAGCT | 58.319 | 37.500 | 0.00 | 0.00 | 0.00 | 4.09 |
7375 | 9677 | 5.527582 | ACTCCATAAAATGTTGTATCGGAGC | 59.472 | 40.000 | 14.64 | 0.00 | 40.97 | 4.70 |
7376 | 9678 | 8.833231 | ATACTCCATAAAATGTTGTATCGGAG | 57.167 | 34.615 | 13.85 | 13.85 | 42.58 | 4.63 |
7377 | 9679 | 8.425703 | TGATACTCCATAAAATGTTGTATCGGA | 58.574 | 33.333 | 16.10 | 0.00 | 41.31 | 4.55 |
7378 | 9680 | 8.601845 | TGATACTCCATAAAATGTTGTATCGG | 57.398 | 34.615 | 16.10 | 0.00 | 41.31 | 4.18 |
7420 | 9722 | 9.612066 | ACCATTTGAACTAAAAATCACACAAAT | 57.388 | 25.926 | 0.00 | 0.00 | 37.24 | 2.32 |
7421 | 9723 | 9.092876 | GACCATTTGAACTAAAAATCACACAAA | 57.907 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
7422 | 9724 | 7.708752 | GGACCATTTGAACTAAAAATCACACAA | 59.291 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
7423 | 9725 | 7.147828 | TGGACCATTTGAACTAAAAATCACACA | 60.148 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
7424 | 9726 | 7.206687 | TGGACCATTTGAACTAAAAATCACAC | 58.793 | 34.615 | 0.00 | 0.00 | 0.00 | 3.82 |
7425 | 9727 | 7.353414 | TGGACCATTTGAACTAAAAATCACA | 57.647 | 32.000 | 0.00 | 0.00 | 0.00 | 3.58 |
7426 | 9728 | 8.831715 | AATGGACCATTTGAACTAAAAATCAC | 57.168 | 30.769 | 14.28 | 0.00 | 28.76 | 3.06 |
7427 | 9729 | 8.646004 | TGAATGGACCATTTGAACTAAAAATCA | 58.354 | 29.630 | 20.71 | 6.84 | 33.90 | 2.57 |
7428 | 9730 | 9.487790 | TTGAATGGACCATTTGAACTAAAAATC | 57.512 | 29.630 | 20.71 | 4.28 | 33.90 | 2.17 |
7429 | 9731 | 9.844257 | TTTGAATGGACCATTTGAACTAAAAAT | 57.156 | 25.926 | 20.71 | 0.00 | 33.90 | 1.82 |
7430 | 9732 | 9.103861 | GTTTGAATGGACCATTTGAACTAAAAA | 57.896 | 29.630 | 24.88 | 13.64 | 33.90 | 1.94 |
7431 | 9733 | 8.260818 | TGTTTGAATGGACCATTTGAACTAAAA | 58.739 | 29.630 | 28.37 | 16.53 | 33.90 | 1.52 |
7432 | 9734 | 7.786030 | TGTTTGAATGGACCATTTGAACTAAA | 58.214 | 30.769 | 28.37 | 18.18 | 33.90 | 1.85 |
7433 | 9735 | 7.069331 | ACTGTTTGAATGGACCATTTGAACTAA | 59.931 | 33.333 | 28.37 | 16.29 | 33.90 | 2.24 |
7434 | 9736 | 6.549364 | ACTGTTTGAATGGACCATTTGAACTA | 59.451 | 34.615 | 28.37 | 20.22 | 33.90 | 2.24 |
7435 | 9737 | 5.363580 | ACTGTTTGAATGGACCATTTGAACT | 59.636 | 36.000 | 28.37 | 17.20 | 33.90 | 3.01 |
7436 | 9738 | 5.600696 | ACTGTTTGAATGGACCATTTGAAC | 58.399 | 37.500 | 25.15 | 25.15 | 33.90 | 3.18 |
7437 | 9739 | 5.867903 | ACTGTTTGAATGGACCATTTGAA | 57.132 | 34.783 | 20.71 | 14.81 | 33.90 | 2.69 |
7438 | 9740 | 5.242838 | GGTACTGTTTGAATGGACCATTTGA | 59.757 | 40.000 | 20.71 | 9.86 | 33.90 | 2.69 |
7439 | 9741 | 5.010516 | TGGTACTGTTTGAATGGACCATTTG | 59.989 | 40.000 | 20.71 | 9.58 | 33.90 | 2.32 |
7440 | 9742 | 5.144100 | TGGTACTGTTTGAATGGACCATTT | 58.856 | 37.500 | 20.71 | 5.90 | 33.90 | 2.32 |
7441 | 9743 | 4.735369 | TGGTACTGTTTGAATGGACCATT | 58.265 | 39.130 | 19.92 | 19.92 | 36.72 | 3.16 |
7442 | 9744 | 4.380843 | TGGTACTGTTTGAATGGACCAT | 57.619 | 40.909 | 0.00 | 0.00 | 30.67 | 3.55 |
7443 | 9745 | 3.866703 | TGGTACTGTTTGAATGGACCA | 57.133 | 42.857 | 0.00 | 0.00 | 33.18 | 4.02 |
7444 | 9746 | 6.433093 | AGTTTATGGTACTGTTTGAATGGACC | 59.567 | 38.462 | 0.00 | 0.00 | 0.00 | 4.46 |
7445 | 9747 | 7.448748 | AGTTTATGGTACTGTTTGAATGGAC | 57.551 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
7446 | 9748 | 8.598916 | TCTAGTTTATGGTACTGTTTGAATGGA | 58.401 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
7447 | 9749 | 8.786826 | TCTAGTTTATGGTACTGTTTGAATGG | 57.213 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
7448 | 9750 | 9.436957 | ACTCTAGTTTATGGTACTGTTTGAATG | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
7450 | 9752 | 9.268268 | CAACTCTAGTTTATGGTACTGTTTGAA | 57.732 | 33.333 | 0.00 | 0.00 | 35.83 | 2.69 |
7451 | 9753 | 8.426489 | ACAACTCTAGTTTATGGTACTGTTTGA | 58.574 | 33.333 | 0.00 | 0.00 | 35.83 | 2.69 |
7452 | 9754 | 8.495949 | CACAACTCTAGTTTATGGTACTGTTTG | 58.504 | 37.037 | 0.00 | 0.00 | 35.83 | 2.93 |
7453 | 9755 | 7.660208 | CCACAACTCTAGTTTATGGTACTGTTT | 59.340 | 37.037 | 12.10 | 0.00 | 37.13 | 2.83 |
7454 | 9756 | 7.159372 | CCACAACTCTAGTTTATGGTACTGTT | 58.841 | 38.462 | 12.10 | 0.00 | 37.13 | 3.16 |
7455 | 9757 | 6.698380 | CCACAACTCTAGTTTATGGTACTGT | 58.302 | 40.000 | 12.10 | 0.00 | 37.13 | 3.55 |
7456 | 9758 | 5.581085 | GCCACAACTCTAGTTTATGGTACTG | 59.419 | 44.000 | 17.96 | 0.00 | 40.92 | 2.74 |
7457 | 9759 | 5.338137 | GGCCACAACTCTAGTTTATGGTACT | 60.338 | 44.000 | 17.96 | 0.00 | 40.92 | 2.73 |
7458 | 9760 | 4.874396 | GGCCACAACTCTAGTTTATGGTAC | 59.126 | 45.833 | 17.96 | 11.31 | 40.92 | 3.34 |
7459 | 9761 | 4.532916 | TGGCCACAACTCTAGTTTATGGTA | 59.467 | 41.667 | 0.00 | 9.53 | 40.92 | 3.25 |
7460 | 9762 | 3.329520 | TGGCCACAACTCTAGTTTATGGT | 59.670 | 43.478 | 0.00 | 2.53 | 40.92 | 3.55 |
7461 | 9763 | 3.950397 | TGGCCACAACTCTAGTTTATGG | 58.050 | 45.455 | 0.00 | 14.62 | 41.38 | 2.74 |
7462 | 9764 | 7.624360 | TTTATGGCCACAACTCTAGTTTATG | 57.376 | 36.000 | 8.16 | 0.00 | 35.83 | 1.90 |
7463 | 9765 | 7.201821 | GCATTTATGGCCACAACTCTAGTTTAT | 60.202 | 37.037 | 8.16 | 0.00 | 35.83 | 1.40 |
7464 | 9766 | 6.094881 | GCATTTATGGCCACAACTCTAGTTTA | 59.905 | 38.462 | 8.16 | 0.00 | 35.83 | 2.01 |
7465 | 9767 | 5.105756 | GCATTTATGGCCACAACTCTAGTTT | 60.106 | 40.000 | 8.16 | 0.00 | 35.83 | 2.66 |
7466 | 9768 | 4.399303 | GCATTTATGGCCACAACTCTAGTT | 59.601 | 41.667 | 8.16 | 0.00 | 39.12 | 2.24 |
7467 | 9769 | 3.947834 | GCATTTATGGCCACAACTCTAGT | 59.052 | 43.478 | 8.16 | 0.00 | 0.00 | 2.57 |
7468 | 9770 | 3.947196 | TGCATTTATGGCCACAACTCTAG | 59.053 | 43.478 | 8.16 | 0.00 | 0.00 | 2.43 |
7469 | 9771 | 3.961849 | TGCATTTATGGCCACAACTCTA | 58.038 | 40.909 | 8.16 | 0.00 | 0.00 | 2.43 |
7470 | 9772 | 2.806434 | TGCATTTATGGCCACAACTCT | 58.194 | 42.857 | 8.16 | 0.00 | 0.00 | 3.24 |
7471 | 9773 | 3.450578 | CATGCATTTATGGCCACAACTC | 58.549 | 45.455 | 8.16 | 0.20 | 0.00 | 3.01 |
7472 | 9774 | 2.168936 | CCATGCATTTATGGCCACAACT | 59.831 | 45.455 | 8.16 | 0.00 | 41.02 | 3.16 |
7473 | 9775 | 2.168106 | TCCATGCATTTATGGCCACAAC | 59.832 | 45.455 | 8.16 | 0.00 | 45.83 | 3.32 |
7474 | 9776 | 2.168106 | GTCCATGCATTTATGGCCACAA | 59.832 | 45.455 | 8.16 | 0.00 | 45.83 | 3.33 |
7475 | 9777 | 1.755959 | GTCCATGCATTTATGGCCACA | 59.244 | 47.619 | 8.16 | 0.00 | 45.83 | 4.17 |
7476 | 9778 | 1.755959 | TGTCCATGCATTTATGGCCAC | 59.244 | 47.619 | 8.16 | 0.00 | 45.83 | 5.01 |
7477 | 9779 | 2.033372 | CTGTCCATGCATTTATGGCCA | 58.967 | 47.619 | 8.56 | 8.56 | 45.83 | 5.36 |
7478 | 9780 | 2.034124 | ACTGTCCATGCATTTATGGCC | 58.966 | 47.619 | 0.00 | 0.00 | 45.83 | 5.36 |
7479 | 9781 | 3.806625 | AACTGTCCATGCATTTATGGC | 57.193 | 42.857 | 0.00 | 0.00 | 45.83 | 4.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.