AutoCloner

Multiple sequence alignment - TraesCS6B01G110200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G110200	chr6B	100.000	2561	0	0	1	2561	92525324	92522764	0.000000e+00	4730
1	TraesCS6B01G110200	chrUn	90.874	1819	117	29	59	1869	20708531	20710308	0.000000e+00	2394
2	TraesCS6B01G110200	chrUn	91.000	100	9	0	1	100	20708442	20708541	4.440000e-28	135
3	TraesCS6B01G110200	chr6A	91.696	1144	50	21	668	1805	55885430	55884326	0.000000e+00	1544
4	TraesCS6B01G110200	chr6A	96.970	66	0	2	1805	1869	55884301	55884237	2.690000e-20	110
5	TraesCS6B01G110200	chr3B	89.102	679	63	8	1892	2561	3135256	3135932	0.000000e+00	833
6	TraesCS6B01G110200	chr1D	88.987	681	62	9	1891	2561	16205580	16204903	0.000000e+00	830
7	TraesCS6B01G110200	chr3A	88.496	678	67	5	1893	2561	693200930	693201605	0.000000e+00	809
8	TraesCS6B01G110200	chr3A	88.095	672	66	12	1893	2556	20911408	20910743	0.000000e+00	785
9	TraesCS6B01G110200	chr5D	88.331	677	69	9	1893	2561	69326225	69325551	0.000000e+00	804
10	TraesCS6B01G110200	chr6D	88.348	678	65	12	1893	2561	143085433	143084761	0.000000e+00	802
11	TraesCS6B01G110200	chr6D	78.191	564	103	13	58	619	128074497	128073952	2.440000e-90	342
12	TraesCS6B01G110200	chr2A	88.314	676	67	9	1895	2561	549955011	549954339	0.000000e+00	800
13	TraesCS6B01G110200	chr2B	88.088	680	67	9	1892	2561	23337033	23337708	0.000000e+00	795
14	TraesCS6B01G110200	chr2B	87.906	678	68	10	1897	2561	39975453	39974777	0.000000e+00	785
15	TraesCS6B01G110200	chr1A	78.120	585	108	14	39	619	430186805	430186237	1.130000e-93	353
16	TraesCS6B01G110200	chr5A	77.680	569	105	14	55	620	520743720	520744269	6.830000e-86	327
17	TraesCS6B01G110200	chr5A	76.431	594	114	15	47	634	142748640	142748067	5.360000e-77	298
18	TraesCS6B01G110200	chr5A	78.626	393	68	11	228	619	627671581	627671958	1.970000e-61	246
19	TraesCS6B01G110200	chr5A	78.273	359	66	9	262	619	626515198	626515545	1.190000e-53	220
20	TraesCS6B01G110200	chr5B	78.185	518	92	15	106	619	626436273	626436773	6.880000e-81	311
21	TraesCS6B01G110200	chr4D	76.325	566	113	13	58	619	341038960	341038412	1.500000e-72	283

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G110200	chr6B	92522764	92525324	2560	True	4730.0	4730	100.000	1	2561	1	chr6B.!!$R1	2560
1	TraesCS6B01G110200	chrUn	20708442	20710308	1866	False	1264.5	2394	90.937	1	1869	2	chrUn.!!$F1	1868
2	TraesCS6B01G110200	chr6A	55884237	55885430	1193	True	827.0	1544	94.333	668	1869	2	chr6A.!!$R1	1201
3	TraesCS6B01G110200	chr3B	3135256	3135932	676	False	833.0	833	89.102	1892	2561	1	chr3B.!!$F1	669
4	TraesCS6B01G110200	chr1D	16204903	16205580	677	True	830.0	830	88.987	1891	2561	1	chr1D.!!$R1	670
5	TraesCS6B01G110200	chr3A	693200930	693201605	675	False	809.0	809	88.496	1893	2561	1	chr3A.!!$F1	668
6	TraesCS6B01G110200	chr3A	20910743	20911408	665	True	785.0	785	88.095	1893	2556	1	chr3A.!!$R1	663
7	TraesCS6B01G110200	chr5D	69325551	69326225	674	True	804.0	804	88.331	1893	2561	1	chr5D.!!$R1	668
8	TraesCS6B01G110200	chr6D	143084761	143085433	672	True	802.0	802	88.348	1893	2561	1	chr6D.!!$R2	668
9	TraesCS6B01G110200	chr6D	128073952	128074497	545	True	342.0	342	78.191	58	619	1	chr6D.!!$R1	561
10	TraesCS6B01G110200	chr2A	549954339	549955011	672	True	800.0	800	88.314	1895	2561	1	chr2A.!!$R1	666
11	TraesCS6B01G110200	chr2B	23337033	23337708	675	False	795.0	795	88.088	1892	2561	1	chr2B.!!$F1	669
12	TraesCS6B01G110200	chr2B	39974777	39975453	676	True	785.0	785	87.906	1897	2561	1	chr2B.!!$R1	664
13	TraesCS6B01G110200	chr1A	430186237	430186805	568	True	353.0	353	78.120	39	619	1	chr1A.!!$R1	580
14	TraesCS6B01G110200	chr5A	520743720	520744269	549	False	327.0	327	77.680	55	620	1	chr5A.!!$F1	565
15	TraesCS6B01G110200	chr5A	142748067	142748640	573	True	298.0	298	76.431	47	634	1	chr5A.!!$R1	587
16	TraesCS6B01G110200	chr5B	626436273	626436773	500	False	311.0	311	78.185	106	619	1	chr5B.!!$F1	513
17	TraesCS6B01G110200	chr4D	341038412	341038960	548	True	283.0	283	76.325	58	619	1	chr4D.!!$R1	561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
242	274	1.136695	CTCACATGTCAGCTCTCTCCC	59.863	57.143	0.0	0.0	0.0	4.3	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1771	1814	0.105778	TGGTTGTGTGCATCAGTCGA	59.894	50.0	0.0	0.0	0.0	4.2	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	5.833131	TCTTTGTATCCCTTTGAACTTTGCT	59.167	36.000	0.00	0.00	0.00	3.91
45	46	9.455847	CTTTGAACTTTGCTATATGAAATAGGC	57.544	33.333	0.00	0.00	33.84	3.93
88	89	2.325583	AGTTGTTTCTCACCGCTCAA	57.674	45.000	0.00	0.00	0.00	3.02
223	255	3.075283	TGTGACCAAAATACCCATGGACT	59.925	43.478	15.22	0.00	37.66	3.85
241	273	1.824230	ACTCACATGTCAGCTCTCTCC	59.176	52.381	0.00	0.00	0.00	3.71
242	274	1.136695	CTCACATGTCAGCTCTCTCCC	59.863	57.143	0.00	0.00	0.00	4.30
243	275	1.193323	CACATGTCAGCTCTCTCCCT	58.807	55.000	0.00	0.00	0.00	4.20
244	276	2.024941	TCACATGTCAGCTCTCTCCCTA	60.025	50.000	0.00	0.00	0.00	3.53
246	278	4.141158	TCACATGTCAGCTCTCTCCCTATA	60.141	45.833	0.00	0.00	0.00	1.31
258	290	5.358090	TCTCTCCCTATATATCGCACTACG	58.642	45.833	0.00	0.00	45.62	3.51
260	292	4.874396	TCTCCCTATATATCGCACTACGTG	59.126	45.833	0.00	0.00	44.19	4.49
344	376	4.410400	CTCCGGACAAGTGGGGCC	62.410	72.222	0.00	0.00	0.00	5.80
410	442	6.195600	TGTGGGTCTAGAAGTATTTTGGTT	57.804	37.500	0.00	0.00	0.00	3.67
411	443	6.001460	TGTGGGTCTAGAAGTATTTTGGTTG	58.999	40.000	0.00	0.00	0.00	3.77
437	470	3.070446	ACATGGTGAACGAGTTTGACCTA	59.930	43.478	14.92	6.35	0.00	3.08
635	672	5.930837	AAAACCTGATGAAACAAAGGTCA	57.069	34.783	9.00	0.00	42.25	4.02
637	674	4.170468	ACCTGATGAAACAAAGGTCACT	57.830	40.909	0.00	0.00	38.73	3.41
710	748	8.746922	TGAATATGAACAAGATGAAAAGTTGC	57.253	30.769	0.00	0.00	0.00	4.17
950	988	7.227512	AGGTTACATATCATCAACAAAGCTAGC	59.772	37.037	6.62	6.62	0.00	3.42
951	989	7.227512	GGTTACATATCATCAACAAAGCTAGCT	59.772	37.037	12.68	12.68	0.00	3.32
952	990	9.261180	GTTACATATCATCAACAAAGCTAGCTA	57.739	33.333	19.70	0.40	0.00	3.32
953	991	7.959689	ACATATCATCAACAAAGCTAGCTAG	57.040	36.000	19.70	16.84	0.00	3.42
969	1007	6.801575	GCTAGCTAGCTAGAAGAAGAAGAAA	58.198	40.000	42.59	13.88	46.56	2.52
1573	1614	1.331756	CCAACTAATGATCAGCCACGC	59.668	52.381	0.09	0.00	0.00	5.34
1597	1638	0.810648	GCACCATCGGCTCAATCAAA	59.189	50.000	0.00	0.00	0.00	2.69
1598	1639	1.406539	GCACCATCGGCTCAATCAAAT	59.593	47.619	0.00	0.00	0.00	2.32
1599	1640	2.618241	GCACCATCGGCTCAATCAAATA	59.382	45.455	0.00	0.00	0.00	1.40
1600	1641	3.548818	GCACCATCGGCTCAATCAAATAC	60.549	47.826	0.00	0.00	0.00	1.89
1602	1643	3.879295	ACCATCGGCTCAATCAAATACAG	59.121	43.478	0.00	0.00	0.00	2.74
1605	1646	5.050091	CCATCGGCTCAATCAAATACAGTAC	60.050	44.000	0.00	0.00	0.00	2.73
1607	1648	3.245284	CGGCTCAATCAAATACAGTACCG	59.755	47.826	0.00	0.00	0.00	4.02
1608	1649	3.002348	GGCTCAATCAAATACAGTACCGC	59.998	47.826	0.00	0.00	0.00	5.68
1609	1650	3.002348	GCTCAATCAAATACAGTACCGCC	59.998	47.826	0.00	0.00	0.00	6.13
1612	1653	5.919755	TCAATCAAATACAGTACCGCCATA	58.080	37.500	0.00	0.00	0.00	2.74
1613	1654	5.756347	TCAATCAAATACAGTACCGCCATAC	59.244	40.000	0.00	0.00	0.00	2.39
1614	1655	3.708890	TCAAATACAGTACCGCCATACG	58.291	45.455	0.00	0.00	43.15	3.06
1615	1656	3.130869	TCAAATACAGTACCGCCATACGT	59.869	43.478	0.00	0.00	41.42	3.57
1707	1749	2.604174	GGCGGCGTATGTATGTGCC	61.604	63.158	9.37	0.00	44.09	5.01
1709	1751	3.637714	GGCGTATGTATGTGCCGG	58.362	61.111	0.00	0.00	37.81	6.13
1710	1752	1.068417	GGCGTATGTATGTGCCGGA	59.932	57.895	5.05	0.00	37.81	5.14
1719	1762	2.172505	TGTATGTGCCGGATGGAATTCT	59.827	45.455	5.05	0.00	37.49	2.40
1749	1792	5.428496	TTCCGTGAACTATACCATAGACG	57.572	43.478	0.30	0.00	0.00	4.18
1752	1795	4.219802	CGTGAACTATACCATAGACGCAG	58.780	47.826	0.30	0.00	0.00	5.18
1764	1807	3.560251	ACGCAGTCAACCCCAGCT	61.560	61.111	0.00	0.00	29.74	4.24
1771	1814	0.610232	GTCAACCCCAGCTTCTGCAT	60.610	55.000	0.00	0.00	42.74	3.96
1772	1815	0.322816	TCAACCCCAGCTTCTGCATC	60.323	55.000	0.00	0.00	42.74	3.91
1773	1816	1.377725	AACCCCAGCTTCTGCATCG	60.378	57.895	0.00	0.00	42.74	3.84
1774	1817	1.841302	AACCCCAGCTTCTGCATCGA	61.841	55.000	0.00	0.00	42.74	3.59
1775	1818	1.817099	CCCCAGCTTCTGCATCGAC	60.817	63.158	0.00	0.00	42.74	4.20
2055	2135	2.967599	ATATTGCACGTGCTCTCTCA	57.032	45.000	37.59	16.84	42.66	3.27
2085	2165	5.010922	ACAACATATGCACTCCAAACACAAT	59.989	36.000	1.58	0.00	0.00	2.71
2201	2282	9.838975	CAGCAAATAGTTCAACAATACAACATA	57.161	29.630	0.00	0.00	0.00	2.29
2241	2322	2.917933	CTCTTTGTCGGCCATTCCATA	58.082	47.619	2.24	0.00	34.01	2.74
2245	2326	1.597027	GTCGGCCATTCCATACCCG	60.597	63.158	2.24	0.00	40.25	5.28
2251	2332	0.106719	CCATTCCATACCCGCCACTT	60.107	55.000	0.00	0.00	0.00	3.16
2293	2376	6.821160	TGAAGATTATCATAAGTTTCGGCACA	59.179	34.615	0.00	0.00	0.00	4.57
2464	2548	3.427909	CGTGCATGATGTACCAAAGCATT	60.428	43.478	8.06	0.00	35.00	3.56
2506	2590	3.557595	CCGATCCTCTCACAATAGCAAAC	59.442	47.826	0.00	0.00	0.00	2.93
2510	2594	3.582647	TCCTCTCACAATAGCAAACTGGA	59.417	43.478	0.00	0.00	0.00	3.86
2523	2607	3.493176	GCAAACTGGACTTGCAAAATCCT	60.493	43.478	23.35	7.78	46.78	3.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
75	76	1.269448	GGCAAAATTGAGCGGTGAGAA	59.731	47.619	0.00	0.00	0.00	2.87
88	89	6.507023	CAGTGAAAACTTCTAGTGGCAAAAT	58.493	36.000	0.00	0.00	0.00	1.82
223	255	1.189752	GGGAGAGAGCTGACATGTGA	58.810	55.000	1.15	0.00	0.00	3.58
344	376	4.081531	ACAATGATAATTGTGGCCTTGTGG	60.082	41.667	7.70	0.00	42.57	4.17
345	377	5.075858	ACAATGATAATTGTGGCCTTGTG	57.924	39.130	7.70	0.00	42.57	3.33
410	442	4.876679	TCAAACTCGTTCACCATGTTTACA	59.123	37.500	0.00	0.00	30.89	2.41
411	443	5.202640	GTCAAACTCGTTCACCATGTTTAC	58.797	41.667	0.00	0.00	30.89	2.01
422	455	8.524870	TTGTTACTATTAGGTCAAACTCGTTC	57.475	34.615	0.00	0.00	0.00	3.95
465	498	8.204160	TGTCATCATTCCGATAGATGTTTACTT	58.796	33.333	0.00	0.00	39.96	2.24
468	501	9.559732	AAATGTCATCATTCCGATAGATGTTTA	57.440	29.630	0.00	0.00	42.60	2.01
511	544	7.862512	TTTGTTTGATGCCTTCTCAAAAATT	57.137	28.000	0.45	0.00	42.49	1.82
523	556	3.637432	TGACATCGTTTTGTTTGATGCC	58.363	40.909	1.60	0.00	42.49	4.40
561	598	9.132521	TCGTTACTTAGTTTTGACATTAGTAGC	57.867	33.333	0.00	0.00	0.00	3.58
564	601	9.189723	GTCTCGTTACTTAGTTTTGACATTAGT	57.810	33.333	0.00	0.00	0.00	2.24
584	621	2.831685	TGCCACTAATTGTGTCTCGT	57.168	45.000	7.09	0.00	44.81	4.18
585	622	5.794687	TTTATGCCACTAATTGTGTCTCG	57.205	39.130	7.09	0.00	44.81	4.04
660	697	2.229784	GGCCTTCAGTTCTGATGGTTTG	59.770	50.000	25.14	9.47	36.04	2.93
674	711	7.289310	TCTTGTTCATATTCATATGGCCTTCA	58.711	34.615	3.32	0.00	40.35	3.02
707	745	9.846248	GCTTTGAAGAGAATAGAATAAAAGCAA	57.154	29.630	10.49	0.00	43.88	3.91
856	894	7.230510	TGGGTACATGAATGGATTATTACTTGC	59.769	37.037	0.00	0.00	0.00	4.01
922	960	8.353423	AGCTTTGTTGATGATATGTAACCTTT	57.647	30.769	0.00	0.00	0.00	3.11
950	988	9.921637	TTCTTTCTTTCTTCTTCTTCTAGCTAG	57.078	33.333	15.01	15.01	0.00	3.42
952	990	9.435688	GATTCTTTCTTTCTTCTTCTTCTAGCT	57.564	33.333	0.00	0.00	0.00	3.32
953	991	9.435688	AGATTCTTTCTTTCTTCTTCTTCTAGC	57.564	33.333	0.00	0.00	0.00	3.42
969	1007	9.995003	CCTAGCTTAATGTATCAGATTCTTTCT	57.005	33.333	0.00	0.00	33.90	2.52
1573	1614	3.945434	GAGCCGATGGTGCATGCG	61.945	66.667	14.09	0.00	0.00	4.73
1587	1628	3.002348	GGCGGTACTGTATTTGATTGAGC	59.998	47.826	3.10	0.00	0.00	4.26
1597	1638	1.338973	CCACGTATGGCGGTACTGTAT	59.661	52.381	3.10	1.50	46.52	2.29
1598	1639	0.740149	CCACGTATGGCGGTACTGTA	59.260	55.000	3.10	0.00	46.52	2.74
1599	1640	1.514087	CCACGTATGGCGGTACTGT	59.486	57.895	3.10	0.00	46.52	3.55
1600	1641	4.412933	CCACGTATGGCGGTACTG	57.587	61.111	0.00	0.00	46.52	2.74
1617	1658	6.040616	AGCAGTGGTGATACTTGGTAGTATAC	59.959	42.308	0.00	0.00	45.43	1.47
1618	1659	6.134055	AGCAGTGGTGATACTTGGTAGTATA	58.866	40.000	0.00	0.00	45.43	1.47
1620	1661	4.350245	AGCAGTGGTGATACTTGGTAGTA	58.650	43.478	0.00	0.00	40.96	1.82
1621	1662	3.173965	AGCAGTGGTGATACTTGGTAGT	58.826	45.455	0.00	0.00	38.44	2.73
1622	1663	3.895232	AGCAGTGGTGATACTTGGTAG	57.105	47.619	0.00	0.00	0.00	3.18
1656	1697	4.178540	CGGCATCTTACGGTTCTCTTTAA	58.821	43.478	0.00	0.00	0.00	1.52
1685	1726	2.913578	ATACATACGCCGCCGGGA	60.914	61.111	4.77	0.00	39.22	5.14
1707	1749	5.429957	GAAATCTTCCAGAATTCCATCCG	57.570	43.478	0.65	0.00	29.95	4.18
1733	1776	5.434352	TGACTGCGTCTATGGTATAGTTC	57.566	43.478	9.49	0.00	33.15	3.01
1736	1779	4.547532	GGTTGACTGCGTCTATGGTATAG	58.452	47.826	9.49	0.00	33.15	1.31
1749	1792	1.073897	AGAAGCTGGGGTTGACTGC	59.926	57.895	0.00	0.00	0.00	4.40
1752	1795	0.610232	ATGCAGAAGCTGGGGTTGAC	60.610	55.000	0.00	0.00	42.74	3.18
1757	1800	1.817099	GTCGATGCAGAAGCTGGGG	60.817	63.158	0.00	0.00	42.74	4.96
1761	1804	1.937278	CATCAGTCGATGCAGAAGCT	58.063	50.000	0.00	0.00	42.54	3.74
1771	1814	0.105778	TGGTTGTGTGCATCAGTCGA	59.894	50.000	0.00	0.00	0.00	4.20
1772	1815	1.129251	GATGGTTGTGTGCATCAGTCG	59.871	52.381	0.00	0.00	0.00	4.18
1773	1816	1.129251	CGATGGTTGTGTGCATCAGTC	59.871	52.381	0.00	0.00	0.00	3.51
1774	1817	1.159285	CGATGGTTGTGTGCATCAGT	58.841	50.000	0.00	0.00	0.00	3.41
1775	1818	0.179181	GCGATGGTTGTGTGCATCAG	60.179	55.000	0.00	0.00	0.00	2.90
1873	1941	9.688091	TGCTCTTAATAACCCAACACAAATATA	57.312	29.630	0.00	0.00	0.00	0.86
1874	1942	8.588290	TGCTCTTAATAACCCAACACAAATAT	57.412	30.769	0.00	0.00	0.00	1.28
1875	1943	8.588290	ATGCTCTTAATAACCCAACACAAATA	57.412	30.769	0.00	0.00	0.00	1.40
1876	1944	6.909550	TGCTCTTAATAACCCAACACAAAT	57.090	33.333	0.00	0.00	0.00	2.32
1877	1945	6.719370	AGATGCTCTTAATAACCCAACACAAA	59.281	34.615	0.00	0.00	0.00	2.83
1878	1946	6.245408	AGATGCTCTTAATAACCCAACACAA	58.755	36.000	0.00	0.00	0.00	3.33
1879	1947	5.815581	AGATGCTCTTAATAACCCAACACA	58.184	37.500	0.00	0.00	0.00	3.72
1880	1948	5.297029	GGAGATGCTCTTAATAACCCAACAC	59.703	44.000	0.00	0.00	0.00	3.32
1881	1949	5.045213	TGGAGATGCTCTTAATAACCCAACA	60.045	40.000	0.00	0.00	0.00	3.33
1882	1950	5.437060	TGGAGATGCTCTTAATAACCCAAC	58.563	41.667	0.00	0.00	0.00	3.77
1883	1951	5.708736	TGGAGATGCTCTTAATAACCCAA	57.291	39.130	0.00	0.00	0.00	4.12
1884	1952	5.437060	GTTGGAGATGCTCTTAATAACCCA	58.563	41.667	0.00	0.00	0.00	4.51
1885	1953	4.511826	CGTTGGAGATGCTCTTAATAACCC	59.488	45.833	0.00	0.00	0.00	4.11
1886	1954	5.234543	GTCGTTGGAGATGCTCTTAATAACC	59.765	44.000	0.00	0.00	0.00	2.85
1887	1955	5.234543	GGTCGTTGGAGATGCTCTTAATAAC	59.765	44.000	0.00	0.00	0.00	1.89
1888	1956	5.357257	GGTCGTTGGAGATGCTCTTAATAA	58.643	41.667	0.00	0.00	0.00	1.40
1889	1957	4.499188	CGGTCGTTGGAGATGCTCTTAATA	60.499	45.833	0.00	0.00	0.00	0.98
1890	1958	3.738281	CGGTCGTTGGAGATGCTCTTAAT	60.738	47.826	0.00	0.00	0.00	1.40
2039	2117	0.875908	GTGTGAGAGAGCACGTGCAA	60.876	55.000	39.21	16.28	45.16	4.08
2046	2126	2.984562	TGTTGTTTGTGTGAGAGAGCA	58.015	42.857	0.00	0.00	0.00	4.26
2055	2135	3.888323	TGGAGTGCATATGTTGTTTGTGT	59.112	39.130	4.29	0.00	0.00	3.72
2201	2282	3.916761	AGCATCATGATTTGTGCGTTTT	58.083	36.364	5.16	0.00	37.41	2.43
2241	2322	1.949847	CTCATCGAGAAGTGGCGGGT	61.950	60.000	0.00	0.00	0.00	5.28
2245	2326	1.686052	AGGATCTCATCGAGAAGTGGC	59.314	52.381	0.00	0.00	42.27	5.01
2251	2332	4.786425	TCTTCAGAAGGATCTCATCGAGA	58.214	43.478	10.42	0.00	43.20	4.04
2293	2376	2.037772	GCCTCCTATCATGTCATTCGGT	59.962	50.000	0.00	0.00	0.00	4.69
2368	2452	8.760980	ATTTAGACTACTCTCACTATGAGCTT	57.239	34.615	0.74	0.00	43.95	3.74
2391	2475	1.098050	GAATGAGCGTGGCCAAGATT	58.902	50.000	23.82	13.02	0.00	2.40
2437	2521	2.351253	TTGGTACATCATGCACGTTTGC	60.351	45.455	0.00	0.00	44.78	3.68
2487	2571	4.225942	TCCAGTTTGCTATTGTGAGAGGAT	59.774	41.667	0.00	0.00	0.00	3.24
2506	2590	6.515832	AGTTTTTAGGATTTTGCAAGTCCAG	58.484	36.000	25.73	0.00	34.42	3.86
2510	2594	7.588497	AGAGAGTTTTTAGGATTTTGCAAGT	57.412	32.000	0.00	0.00	0.00	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.