Multiple sequence alignment - TraesCS6B01G109500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G109500 chr6B 100.000 2378 0 0 1 2378 90939121 90941498 0.000000e+00 4392
1 TraesCS6B01G109500 chr6B 86.367 1269 152 11 138 1399 16433070 16434324 0.000000e+00 1365
2 TraesCS6B01G109500 chr6B 93.099 826 52 4 1554 2378 15215692 15214871 0.000000e+00 1205
3 TraesCS6B01G109500 chr6B 84.310 1160 177 5 246 1402 15234828 15233671 0.000000e+00 1129
4 TraesCS6B01G109500 chr6B 85.432 1064 129 16 342 1399 15216733 15215690 0.000000e+00 1083
5 TraesCS6B01G109500 chr6B 82.939 1184 173 14 220 1399 16267388 16268546 0.000000e+00 1040
6 TraesCS6B01G109500 chr6B 88.474 321 36 1 1786 2105 16434524 16434844 1.030000e-103 387
7 TraesCS6B01G109500 chr6B 79.402 602 76 13 1786 2378 15396570 15396008 4.800000e-102 381
8 TraesCS6B01G109500 chr6B 90.909 275 24 1 2104 2378 16434909 16435182 3.730000e-98 368
9 TraesCS6B01G109500 chr6B 86.404 228 18 6 1569 1783 16268548 16268775 1.100000e-58 237
10 TraesCS6B01G109500 chr6B 90.099 101 9 1 1554 1653 52979870 52979770 1.920000e-26 130
11 TraesCS6B01G109500 chr6D 86.517 1157 151 5 246 1399 8552772 8551618 0.000000e+00 1267
12 TraesCS6B01G109500 chr6D 82.958 1156 183 14 246 1394 8967607 8968755 0.000000e+00 1031
13 TraesCS6B01G109500 chr6D 79.937 1271 214 31 147 1399 33894970 33896217 0.000000e+00 896
14 TraesCS6B01G109500 chr6D 78.257 1274 243 30 136 1395 8893977 8895230 0.000000e+00 787
15 TraesCS6B01G109500 chr6D 78.640 1147 229 13 246 1384 8659796 8658658 0.000000e+00 747
16 TraesCS6B01G109500 chr6D 76.620 1142 247 19 245 1376 8095723 8094592 1.560000e-171 612
17 TraesCS6B01G109500 chr6D 89.720 321 32 1 1786 2105 8551418 8551098 2.200000e-110 409
18 TraesCS6B01G109500 chr6D 79.801 604 73 15 1786 2378 33896418 33896983 6.160000e-106 394
19 TraesCS6B01G109500 chr6D 90.182 275 26 1 2104 2378 8551035 8550762 8.080000e-95 357
20 TraesCS6B01G109500 chr6D 88.205 195 22 1 1785 1978 8916432 8916626 5.110000e-57 231
21 TraesCS6B01G109500 chr6D 80.989 263 35 8 136 394 34007337 34007588 6.710000e-46 195
22 TraesCS6B01G109500 chr6D 80.579 242 34 11 136 374 8402497 8402266 8.740000e-40 174
23 TraesCS6B01G109500 chr5B 82.939 1184 194 7 220 1397 556628242 556627061 0.000000e+00 1061
24 TraesCS6B01G109500 chr5B 80.134 599 68 14 1786 2378 556794365 556793812 1.320000e-107 399
25 TraesCS6B01G109500 chr5B 96.273 161 3 2 1398 1556 591553658 591553499 6.520000e-66 261
26 TraesCS6B01G109500 chr5B 86.935 199 25 1 1786 1983 621236896 621236698 3.080000e-54 222
27 TraesCS6B01G109500 chr5B 81.933 238 20 11 1569 1783 556627057 556626820 1.880000e-41 180
28 TraesCS6B01G109500 chr2B 81.558 1155 202 10 246 1394 709426146 709424997 0.000000e+00 942
29 TraesCS6B01G109500 chr2B 94.032 620 37 0 780 1399 709321362 709320743 0.000000e+00 941
30 TraesCS6B01G109500 chr2B 81.773 598 82 12 1795 2378 89491987 89492571 2.140000e-130 475
31 TraesCS6B01G109500 chr2B 95.565 248 10 1 1554 1800 709320745 709320498 1.710000e-106 396
32 TraesCS6B01G109500 chr2B 95.294 170 2 2 1396 1559 28427339 28427170 5.040000e-67 265
33 TraesCS6B01G109500 chrUn 86.339 549 55 10 1786 2331 42220664 42220133 4.410000e-162 580
34 TraesCS6B01G109500 chrUn 84.146 246 26 6 1554 1787 42220866 42220622 2.380000e-55 226
35 TraesCS6B01G109500 chr6A 87.850 321 38 1 1786 2105 9475452 9475772 2.230000e-100 375
36 TraesCS6B01G109500 chr6A 85.772 246 22 5 1554 1787 9475250 9475494 5.080000e-62 248
37 TraesCS6B01G109500 chr4D 99.324 148 1 0 1395 1542 93338209 93338062 3.900000e-68 268
38 TraesCS6B01G109500 chr1D 99.324 148 1 0 1395 1542 345368846 345368699 3.900000e-68 268
39 TraesCS6B01G109500 chr7D 97.403 154 4 0 1389 1542 517575226 517575379 1.810000e-66 263
40 TraesCS6B01G109500 chr1B 94.706 170 3 2 1398 1561 316758708 316758539 2.340000e-65 259
41 TraesCS6B01G109500 chr1A 93.220 177 6 2 1389 1559 72780895 72780719 3.030000e-64 255
42 TraesCS6B01G109500 chr4A 93.642 173 5 4 1391 1559 652853425 652853255 1.090000e-63 254
43 TraesCS6B01G109500 chr3D 94.118 170 4 2 1393 1556 355892522 355892353 1.090000e-63 254
44 TraesCS6B01G109500 chr5D 88.587 184 20 1 1794 1976 499863696 499863513 3.080000e-54 222
45 TraesCS6B01G109500 chr5D 82.329 249 29 9 1554 1787 42077231 42077479 4.010000e-48 202
46 TraesCS6B01G109500 chr5A 75.688 218 43 7 1184 1394 624202300 624202086 1.500000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G109500 chr6B 90939121 90941498 2377 False 4392.000000 4392 100.000000 1 2378 1 chr6B.!!$F1 2377
1 TraesCS6B01G109500 chr6B 15214871 15216733 1862 True 1144.000000 1205 89.265500 342 2378 2 chr6B.!!$R4 2036
2 TraesCS6B01G109500 chr6B 15233671 15234828 1157 True 1129.000000 1129 84.310000 246 1402 1 chr6B.!!$R1 1156
3 TraesCS6B01G109500 chr6B 16433070 16435182 2112 False 706.666667 1365 88.583333 138 2378 3 chr6B.!!$F3 2240
4 TraesCS6B01G109500 chr6B 16267388 16268775 1387 False 638.500000 1040 84.671500 220 1783 2 chr6B.!!$F2 1563
5 TraesCS6B01G109500 chr6B 15396008 15396570 562 True 381.000000 381 79.402000 1786 2378 1 chr6B.!!$R2 592
6 TraesCS6B01G109500 chr6D 8967607 8968755 1148 False 1031.000000 1031 82.958000 246 1394 1 chr6D.!!$F3 1148
7 TraesCS6B01G109500 chr6D 8893977 8895230 1253 False 787.000000 787 78.257000 136 1395 1 chr6D.!!$F1 1259
8 TraesCS6B01G109500 chr6D 8658658 8659796 1138 True 747.000000 747 78.640000 246 1384 1 chr6D.!!$R3 1138
9 TraesCS6B01G109500 chr6D 8550762 8552772 2010 True 677.666667 1267 88.806333 246 2378 3 chr6D.!!$R4 2132
10 TraesCS6B01G109500 chr6D 33894970 33896983 2013 False 645.000000 896 79.869000 147 2378 2 chr6D.!!$F5 2231
11 TraesCS6B01G109500 chr6D 8094592 8095723 1131 True 612.000000 612 76.620000 245 1376 1 chr6D.!!$R1 1131
12 TraesCS6B01G109500 chr5B 556626820 556628242 1422 True 620.500000 1061 82.436000 220 1783 2 chr5B.!!$R4 1563
13 TraesCS6B01G109500 chr5B 556793812 556794365 553 True 399.000000 399 80.134000 1786 2378 1 chr5B.!!$R1 592
14 TraesCS6B01G109500 chr2B 709424997 709426146 1149 True 942.000000 942 81.558000 246 1394 1 chr2B.!!$R2 1148
15 TraesCS6B01G109500 chr2B 709320498 709321362 864 True 668.500000 941 94.798500 780 1800 2 chr2B.!!$R3 1020
16 TraesCS6B01G109500 chr2B 89491987 89492571 584 False 475.000000 475 81.773000 1795 2378 1 chr2B.!!$F1 583
17 TraesCS6B01G109500 chrUn 42220133 42220866 733 True 403.000000 580 85.242500 1554 2331 2 chrUn.!!$R1 777
18 TraesCS6B01G109500 chr6A 9475250 9475772 522 False 311.500000 375 86.811000 1554 2105 2 chr6A.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.030235 GGCGAACCAGACCACAAAAC 59.97 55.0 0.0 0.0 35.26 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 1591 1.066143 AGCACACAATTACTCCCTCCG 60.066 52.381 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.902112 CCCAGCCCGGCCCATTAT 61.902 66.667 5.55 0.00 0.00 1.28
20 21 2.282462 CCAGCCCGGCCCATTATC 60.282 66.667 5.55 0.00 0.00 1.75
21 22 2.515398 CAGCCCGGCCCATTATCA 59.485 61.111 5.55 0.00 0.00 2.15
22 23 1.601759 CAGCCCGGCCCATTATCAG 60.602 63.158 5.55 0.00 0.00 2.90
23 24 1.770110 AGCCCGGCCCATTATCAGA 60.770 57.895 5.55 0.00 0.00 3.27
24 25 1.302832 GCCCGGCCCATTATCAGAG 60.303 63.158 0.00 0.00 0.00 3.35
25 26 1.768684 GCCCGGCCCATTATCAGAGA 61.769 60.000 0.00 0.00 0.00 3.10
26 27 0.764890 CCCGGCCCATTATCAGAGAA 59.235 55.000 0.00 0.00 0.00 2.87
27 28 1.142870 CCCGGCCCATTATCAGAGAAA 59.857 52.381 0.00 0.00 0.00 2.52
28 29 2.222027 CCGGCCCATTATCAGAGAAAC 58.778 52.381 0.00 0.00 0.00 2.78
29 30 2.158755 CCGGCCCATTATCAGAGAAACT 60.159 50.000 0.00 0.00 0.00 2.66
30 31 2.874701 CGGCCCATTATCAGAGAAACTG 59.125 50.000 0.00 0.00 46.97 3.16
40 41 1.807814 AGAGAAACTGACTGTGGGGT 58.192 50.000 0.00 0.00 0.00 4.95
41 42 1.694696 AGAGAAACTGACTGTGGGGTC 59.305 52.381 0.00 0.00 36.81 4.46
42 43 1.416401 GAGAAACTGACTGTGGGGTCA 59.584 52.381 0.00 0.00 42.96 4.02
43 44 1.141053 AGAAACTGACTGTGGGGTCAC 59.859 52.381 0.00 0.00 40.72 3.67
44 45 1.141053 GAAACTGACTGTGGGGTCACT 59.859 52.381 0.00 0.00 43.94 3.41
45 46 0.759346 AACTGACTGTGGGGTCACTC 59.241 55.000 0.00 0.00 43.94 3.51
46 47 0.398522 ACTGACTGTGGGGTCACTCA 60.399 55.000 0.00 0.00 43.94 3.41
47 48 0.979665 CTGACTGTGGGGTCACTCAT 59.020 55.000 0.00 0.00 43.94 2.90
48 49 0.976641 TGACTGTGGGGTCACTCATC 59.023 55.000 0.00 0.00 43.94 2.92
49 50 0.976641 GACTGTGGGGTCACTCATCA 59.023 55.000 0.00 0.00 43.94 3.07
50 51 1.556911 GACTGTGGGGTCACTCATCAT 59.443 52.381 0.00 0.00 43.94 2.45
51 52 1.556911 ACTGTGGGGTCACTCATCATC 59.443 52.381 0.00 0.00 43.94 2.92
52 53 1.556451 CTGTGGGGTCACTCATCATCA 59.444 52.381 0.00 0.00 43.94 3.07
53 54 1.984424 TGTGGGGTCACTCATCATCAA 59.016 47.619 0.00 0.00 43.94 2.57
54 55 2.374839 TGTGGGGTCACTCATCATCAAA 59.625 45.455 0.00 0.00 43.94 2.69
55 56 3.012518 GTGGGGTCACTCATCATCAAAG 58.987 50.000 0.00 0.00 40.58 2.77
56 57 2.025981 TGGGGTCACTCATCATCAAAGG 60.026 50.000 0.00 0.00 0.00 3.11
57 58 2.648059 GGGTCACTCATCATCAAAGGG 58.352 52.381 0.00 0.00 0.00 3.95
58 59 2.019984 GGTCACTCATCATCAAAGGGC 58.980 52.381 0.00 0.00 0.00 5.19
59 60 1.667724 GTCACTCATCATCAAAGGGCG 59.332 52.381 0.00 0.00 0.00 6.13
60 61 1.554617 TCACTCATCATCAAAGGGCGA 59.445 47.619 0.00 0.00 0.00 5.54
61 62 2.027285 TCACTCATCATCAAAGGGCGAA 60.027 45.455 0.00 0.00 0.00 4.70
62 63 2.096496 CACTCATCATCAAAGGGCGAAC 59.904 50.000 0.00 0.00 0.00 3.95
63 64 1.672881 CTCATCATCAAAGGGCGAACC 59.327 52.381 0.00 0.00 40.67 3.62
64 65 1.004161 TCATCATCAAAGGGCGAACCA 59.996 47.619 0.00 0.00 43.89 3.67
65 66 1.402968 CATCATCAAAGGGCGAACCAG 59.597 52.381 0.00 0.00 43.89 4.00
66 67 0.690192 TCATCAAAGGGCGAACCAGA 59.310 50.000 0.00 0.00 43.89 3.86
67 68 0.804989 CATCAAAGGGCGAACCAGAC 59.195 55.000 0.00 0.00 43.89 3.51
68 69 0.322546 ATCAAAGGGCGAACCAGACC 60.323 55.000 0.00 0.00 43.89 3.85
69 70 1.228124 CAAAGGGCGAACCAGACCA 60.228 57.895 0.00 0.00 43.43 4.02
70 71 1.228154 AAAGGGCGAACCAGACCAC 60.228 57.895 0.00 0.00 43.43 4.16
71 72 1.990160 AAAGGGCGAACCAGACCACA 61.990 55.000 0.00 0.00 43.43 4.17
72 73 1.990160 AAGGGCGAACCAGACCACAA 61.990 55.000 0.00 0.00 43.43 3.33
73 74 1.527380 GGGCGAACCAGACCACAAA 60.527 57.895 0.00 0.00 39.73 2.83
74 75 1.104577 GGGCGAACCAGACCACAAAA 61.105 55.000 0.00 0.00 39.73 2.44
75 76 0.030235 GGCGAACCAGACCACAAAAC 59.970 55.000 0.00 0.00 35.26 2.43
76 77 0.316689 GCGAACCAGACCACAAAACG 60.317 55.000 0.00 0.00 0.00 3.60
77 78 0.306533 CGAACCAGACCACAAAACGG 59.693 55.000 0.00 0.00 0.00 4.44
78 79 0.030235 GAACCAGACCACAAAACGGC 59.970 55.000 0.00 0.00 0.00 5.68
79 80 0.681564 AACCAGACCACAAAACGGCA 60.682 50.000 0.00 0.00 0.00 5.69
80 81 1.358759 CCAGACCACAAAACGGCAC 59.641 57.895 0.00 0.00 0.00 5.01
81 82 1.358759 CAGACCACAAAACGGCACC 59.641 57.895 0.00 0.00 0.00 5.01
82 83 1.101049 CAGACCACAAAACGGCACCT 61.101 55.000 0.00 0.00 0.00 4.00
83 84 0.818040 AGACCACAAAACGGCACCTC 60.818 55.000 0.00 0.00 0.00 3.85
84 85 0.818040 GACCACAAAACGGCACCTCT 60.818 55.000 0.00 0.00 0.00 3.69
85 86 0.818040 ACCACAAAACGGCACCTCTC 60.818 55.000 0.00 0.00 0.00 3.20
86 87 0.535102 CCACAAAACGGCACCTCTCT 60.535 55.000 0.00 0.00 0.00 3.10
87 88 0.868406 CACAAAACGGCACCTCTCTC 59.132 55.000 0.00 0.00 0.00 3.20
88 89 0.468226 ACAAAACGGCACCTCTCTCA 59.532 50.000 0.00 0.00 0.00 3.27
89 90 1.134220 ACAAAACGGCACCTCTCTCAA 60.134 47.619 0.00 0.00 0.00 3.02
90 91 2.154462 CAAAACGGCACCTCTCTCAAT 58.846 47.619 0.00 0.00 0.00 2.57
91 92 2.100605 AAACGGCACCTCTCTCAATC 57.899 50.000 0.00 0.00 0.00 2.67
92 93 0.976641 AACGGCACCTCTCTCAATCA 59.023 50.000 0.00 0.00 0.00 2.57
93 94 0.976641 ACGGCACCTCTCTCAATCAA 59.023 50.000 0.00 0.00 0.00 2.57
94 95 1.338200 ACGGCACCTCTCTCAATCAAC 60.338 52.381 0.00 0.00 0.00 3.18
95 96 1.338105 CGGCACCTCTCTCAATCAACA 60.338 52.381 0.00 0.00 0.00 3.33
96 97 2.783135 GGCACCTCTCTCAATCAACAA 58.217 47.619 0.00 0.00 0.00 2.83
97 98 2.485814 GGCACCTCTCTCAATCAACAAC 59.514 50.000 0.00 0.00 0.00 3.32
98 99 2.158449 GCACCTCTCTCAATCAACAACG 59.842 50.000 0.00 0.00 0.00 4.10
99 100 2.738846 CACCTCTCTCAATCAACAACGG 59.261 50.000 0.00 0.00 0.00 4.44
100 101 1.734465 CCTCTCTCAATCAACAACGGC 59.266 52.381 0.00 0.00 0.00 5.68
101 102 1.734465 CTCTCTCAATCAACAACGGCC 59.266 52.381 0.00 0.00 0.00 6.13
102 103 1.347707 TCTCTCAATCAACAACGGCCT 59.652 47.619 0.00 0.00 0.00 5.19
103 104 1.734465 CTCTCAATCAACAACGGCCTC 59.266 52.381 0.00 0.00 0.00 4.70
104 105 1.071542 TCTCAATCAACAACGGCCTCA 59.928 47.619 0.00 0.00 0.00 3.86
105 106 1.879380 CTCAATCAACAACGGCCTCAA 59.121 47.619 0.00 0.00 0.00 3.02
106 107 2.293122 CTCAATCAACAACGGCCTCAAA 59.707 45.455 0.00 0.00 0.00 2.69
107 108 2.690497 TCAATCAACAACGGCCTCAAAA 59.310 40.909 0.00 0.00 0.00 2.44
108 109 3.131223 TCAATCAACAACGGCCTCAAAAA 59.869 39.130 0.00 0.00 0.00 1.94
109 110 2.570442 TCAACAACGGCCTCAAAAAC 57.430 45.000 0.00 0.00 0.00 2.43
110 111 1.819288 TCAACAACGGCCTCAAAAACA 59.181 42.857 0.00 0.00 0.00 2.83
111 112 2.231478 TCAACAACGGCCTCAAAAACAA 59.769 40.909 0.00 0.00 0.00 2.83
112 113 2.287393 ACAACGGCCTCAAAAACAAC 57.713 45.000 0.00 0.00 0.00 3.32
113 114 1.546476 ACAACGGCCTCAAAAACAACA 59.454 42.857 0.00 0.00 0.00 3.33
114 115 2.028930 ACAACGGCCTCAAAAACAACAA 60.029 40.909 0.00 0.00 0.00 2.83
115 116 2.287393 ACGGCCTCAAAAACAACAAC 57.713 45.000 0.00 0.00 0.00 3.32
116 117 1.546476 ACGGCCTCAAAAACAACAACA 59.454 42.857 0.00 0.00 0.00 3.33
117 118 2.028930 ACGGCCTCAAAAACAACAACAA 60.029 40.909 0.00 0.00 0.00 2.83
118 119 2.347150 CGGCCTCAAAAACAACAACAAC 59.653 45.455 0.00 0.00 0.00 3.32
119 120 3.330267 GGCCTCAAAAACAACAACAACA 58.670 40.909 0.00 0.00 0.00 3.33
120 121 3.748568 GGCCTCAAAAACAACAACAACAA 59.251 39.130 0.00 0.00 0.00 2.83
121 122 4.377943 GGCCTCAAAAACAACAACAACAAC 60.378 41.667 0.00 0.00 0.00 3.32
122 123 4.212214 GCCTCAAAAACAACAACAACAACA 59.788 37.500 0.00 0.00 0.00 3.33
123 124 5.277538 GCCTCAAAAACAACAACAACAACAA 60.278 36.000 0.00 0.00 0.00 2.83
124 125 6.132724 CCTCAAAAACAACAACAACAACAAC 58.867 36.000 0.00 0.00 0.00 3.32
125 126 6.238211 CCTCAAAAACAACAACAACAACAACA 60.238 34.615 0.00 0.00 0.00 3.33
126 127 7.072177 TCAAAAACAACAACAACAACAACAA 57.928 28.000 0.00 0.00 0.00 2.83
127 128 6.961554 TCAAAAACAACAACAACAACAACAAC 59.038 30.769 0.00 0.00 0.00 3.32
128 129 6.422776 AAAACAACAACAACAACAACAACA 57.577 29.167 0.00 0.00 0.00 3.33
129 130 6.422776 AAACAACAACAACAACAACAACAA 57.577 29.167 0.00 0.00 0.00 2.83
130 131 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
131 132 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
132 133 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
133 134 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
134 135 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
144 145 6.463360 ACAACAACAACAACAAAATCCTCTT 58.537 32.000 0.00 0.00 0.00 2.85
153 154 2.289945 ACAAAATCCTCTTGCTCTCGCT 60.290 45.455 0.00 0.00 36.97 4.93
156 157 1.733402 ATCCTCTTGCTCTCGCTCCG 61.733 60.000 0.00 0.00 36.97 4.63
239 259 2.046023 CATGCTCCGCCTCCACAA 60.046 61.111 0.00 0.00 0.00 3.33
241 261 3.984193 ATGCTCCGCCTCCACAAGC 62.984 63.158 0.00 0.00 0.00 4.01
242 262 4.704833 GCTCCGCCTCCACAAGCA 62.705 66.667 0.00 0.00 33.21 3.91
243 263 2.270205 CTCCGCCTCCACAAGCAT 59.730 61.111 0.00 0.00 0.00 3.79
255 275 0.767375 ACAAGCATATCCTCGCCCAT 59.233 50.000 0.00 0.00 0.00 4.00
339 359 1.817099 CGCCATCTCCTGAAGCACC 60.817 63.158 0.00 0.00 0.00 5.01
340 360 1.817099 GCCATCTCCTGAAGCACCG 60.817 63.158 0.00 0.00 0.00 4.94
435 458 0.178846 TCTCCCACCTCAAATCCCCA 60.179 55.000 0.00 0.00 0.00 4.96
554 577 1.963515 CAAAGTGGAGAAAACCCTGGG 59.036 52.381 12.28 12.28 0.00 4.45
604 627 2.035155 TCTCGCCTTCGGAGGTCA 59.965 61.111 12.53 0.00 45.44 4.02
628 651 2.124653 TCGTCTCGCTCTCCCCTC 60.125 66.667 0.00 0.00 0.00 4.30
654 677 1.239347 TCCGCTCTAGATCCATCGTG 58.761 55.000 0.00 0.00 0.00 4.35
707 730 1.084866 TCCTCTGAGAACCTCCTCCA 58.915 55.000 6.17 0.00 32.32 3.86
865 888 1.660167 CATCAATCCAGAGCGCTTCA 58.340 50.000 13.26 0.00 0.00 3.02
873 896 0.739112 CAGAGCGCTTCAAGGGACTC 60.739 60.000 13.26 11.04 38.49 3.36
921 944 0.753848 CCCGTGGTTCTGGGTTGTTT 60.754 55.000 0.00 0.00 40.76 2.83
1054 1077 2.846206 TCTAGGTTCCCATTGATGCTGT 59.154 45.455 0.00 0.00 0.00 4.40
1137 1182 2.092291 GGCGTTCGTTGCTCATCGA 61.092 57.895 0.00 0.00 0.00 3.59
1158 1203 0.108804 CCGTAATGCTCGGTCACAGT 60.109 55.000 0.00 0.00 42.62 3.55
1399 1445 2.755650 CCAAGACGGGCTATGATGTAC 58.244 52.381 0.00 0.00 0.00 2.90
1400 1446 2.365617 CCAAGACGGGCTATGATGTACT 59.634 50.000 0.00 0.00 0.00 2.73
1401 1447 3.553096 CCAAGACGGGCTATGATGTACTC 60.553 52.174 0.00 0.00 0.00 2.59
1402 1448 2.240279 AGACGGGCTATGATGTACTCC 58.760 52.381 0.00 0.00 0.00 3.85
1403 1449 1.272769 GACGGGCTATGATGTACTCCC 59.727 57.143 0.00 0.00 0.00 4.30
1404 1450 1.133136 ACGGGCTATGATGTACTCCCT 60.133 52.381 0.00 0.00 0.00 4.20
1405 1451 1.546476 CGGGCTATGATGTACTCCCTC 59.454 57.143 0.00 0.00 0.00 4.30
1406 1452 1.903183 GGGCTATGATGTACTCCCTCC 59.097 57.143 0.00 0.00 0.00 4.30
1407 1453 1.546476 GGCTATGATGTACTCCCTCCG 59.454 57.143 0.00 0.00 0.00 4.63
1408 1454 2.240279 GCTATGATGTACTCCCTCCGT 58.760 52.381 0.00 0.00 0.00 4.69
1409 1455 2.628657 GCTATGATGTACTCCCTCCGTT 59.371 50.000 0.00 0.00 0.00 4.44
1410 1456 3.305471 GCTATGATGTACTCCCTCCGTTC 60.305 52.174 0.00 0.00 0.00 3.95
1411 1457 1.481871 TGATGTACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
1412 1458 1.006758 TGATGTACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
1413 1459 2.242965 TGATGTACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
1414 1460 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
1415 1461 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
1416 1462 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
1417 1463 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
1418 1464 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
1419 1465 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
1420 1466 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1421 1467 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1422 1468 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1423 1469 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1424 1470 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1425 1471 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1426 1472 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1427 1473 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
1428 1474 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
1445 1491 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
1446 1492 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
1462 1508 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
1463 1509 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
1464 1510 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
1465 1511 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
1466 1512 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
1467 1513 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
1468 1514 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
1469 1515 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
1470 1516 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
1471 1517 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
1473 1519 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
1502 1548 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1503 1549 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1504 1550 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1505 1551 2.421424 AGATTCACTCATTTTGCTCCGC 59.579 45.455 0.00 0.00 0.00 5.54
1506 1552 1.603456 TTCACTCATTTTGCTCCGCA 58.397 45.000 0.00 0.00 36.47 5.69
1507 1553 1.825090 TCACTCATTTTGCTCCGCAT 58.175 45.000 0.00 0.00 38.76 4.73
1508 1554 1.469703 TCACTCATTTTGCTCCGCATG 59.530 47.619 0.00 0.00 38.76 4.06
1509 1555 1.200716 CACTCATTTTGCTCCGCATGT 59.799 47.619 0.00 0.00 38.76 3.21
1510 1556 2.419673 CACTCATTTTGCTCCGCATGTA 59.580 45.455 0.00 0.00 38.76 2.29
1511 1557 2.679837 ACTCATTTTGCTCCGCATGTAG 59.320 45.455 0.00 0.00 38.76 2.74
1512 1558 2.679837 CTCATTTTGCTCCGCATGTAGT 59.320 45.455 0.00 0.00 38.76 2.73
1513 1559 2.677836 TCATTTTGCTCCGCATGTAGTC 59.322 45.455 0.00 0.00 38.76 2.59
1514 1560 2.177394 TTTTGCTCCGCATGTAGTCA 57.823 45.000 0.00 0.00 38.76 3.41
1515 1561 1.438651 TTTGCTCCGCATGTAGTCAC 58.561 50.000 0.00 0.00 38.76 3.67
1516 1562 0.608130 TTGCTCCGCATGTAGTCACT 59.392 50.000 0.00 0.00 38.76 3.41
1517 1563 0.608130 TGCTCCGCATGTAGTCACTT 59.392 50.000 0.00 0.00 31.71 3.16
1518 1564 1.002366 GCTCCGCATGTAGTCACTTG 58.998 55.000 0.00 0.00 33.92 3.16
1519 1565 1.673033 GCTCCGCATGTAGTCACTTGT 60.673 52.381 0.00 0.00 33.46 3.16
1520 1566 2.688507 CTCCGCATGTAGTCACTTGTT 58.311 47.619 0.00 0.00 33.46 2.83
1521 1567 2.412870 TCCGCATGTAGTCACTTGTTG 58.587 47.619 0.00 0.00 33.46 3.33
1522 1568 2.036604 TCCGCATGTAGTCACTTGTTGA 59.963 45.455 0.00 0.00 33.46 3.18
1523 1569 2.805671 CCGCATGTAGTCACTTGTTGAA 59.194 45.455 0.00 0.00 35.39 2.69
1524 1570 3.249799 CCGCATGTAGTCACTTGTTGAAA 59.750 43.478 0.00 0.00 35.39 2.69
1525 1571 4.083324 CCGCATGTAGTCACTTGTTGAAAT 60.083 41.667 0.00 0.00 35.39 2.17
1526 1572 5.082059 CGCATGTAGTCACTTGTTGAAATC 58.918 41.667 0.00 0.00 35.39 2.17
1527 1573 5.106948 CGCATGTAGTCACTTGTTGAAATCT 60.107 40.000 0.00 0.00 35.39 2.40
1528 1574 6.310197 GCATGTAGTCACTTGTTGAAATCTC 58.690 40.000 0.00 0.00 35.39 2.75
1529 1575 6.148480 GCATGTAGTCACTTGTTGAAATCTCT 59.852 38.462 0.00 0.00 35.39 3.10
1530 1576 7.331934 GCATGTAGTCACTTGTTGAAATCTCTA 59.668 37.037 0.00 0.00 35.39 2.43
1531 1577 8.867935 CATGTAGTCACTTGTTGAAATCTCTAG 58.132 37.037 0.00 0.00 35.39 2.43
1532 1578 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
1533 1579 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
1534 1580 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
1535 1581 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
1536 1582 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
1537 1583 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
1538 1584 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
1539 1585 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
1540 1586 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
1543 1589 9.559732 TGTTGAAATCTCTAGAAAGACAAATGA 57.440 29.630 0.00 0.00 0.00 2.57
1546 1592 8.712363 TGAAATCTCTAGAAAGACAAATGAACG 58.288 33.333 0.00 0.00 0.00 3.95
1547 1593 7.602517 AATCTCTAGAAAGACAAATGAACGG 57.397 36.000 0.00 0.00 0.00 4.44
1548 1594 6.340962 TCTCTAGAAAGACAAATGAACGGA 57.659 37.500 0.00 0.00 0.00 4.69
1549 1595 6.390721 TCTCTAGAAAGACAAATGAACGGAG 58.609 40.000 0.00 0.00 0.00 4.63
1550 1596 5.479306 TCTAGAAAGACAAATGAACGGAGG 58.521 41.667 0.00 0.00 0.00 4.30
1551 1597 3.412386 AGAAAGACAAATGAACGGAGGG 58.588 45.455 0.00 0.00 0.00 4.30
1552 1598 3.072476 AGAAAGACAAATGAACGGAGGGA 59.928 43.478 0.00 0.00 0.00 4.20
1588 1634 4.039852 TGGTTGTCTGCTGTTGTATGACTA 59.960 41.667 0.00 0.00 0.00 2.59
1600 1646 5.991606 TGTTGTATGACTATTAGATGCTGGC 59.008 40.000 0.00 0.00 0.00 4.85
1646 1693 7.038154 TGGAATTGATAATTTGATCCCGAAC 57.962 36.000 0.00 0.00 0.00 3.95
1736 1805 8.263940 TCTAAACACATGTATTGGAACTAAGC 57.736 34.615 0.00 0.00 0.00 3.09
1763 1832 4.197750 GTGAGATCAGTCCATTCTGCAAT 58.802 43.478 0.00 0.00 35.63 3.56
1764 1833 4.035324 GTGAGATCAGTCCATTCTGCAATG 59.965 45.833 0.00 0.00 39.45 2.82
1765 1834 2.950309 AGATCAGTCCATTCTGCAATGC 59.050 45.455 0.00 0.00 38.53 3.56
1766 1835 2.203470 TCAGTCCATTCTGCAATGCA 57.797 45.000 7.99 7.99 38.53 3.96
1767 1836 2.730382 TCAGTCCATTCTGCAATGCAT 58.270 42.857 8.91 0.00 38.53 3.96
1768 1837 3.093814 TCAGTCCATTCTGCAATGCATT 58.906 40.909 8.91 5.99 38.53 3.56
1769 1838 3.129813 TCAGTCCATTCTGCAATGCATTC 59.870 43.478 8.91 5.49 38.53 2.67
1770 1839 3.093814 AGTCCATTCTGCAATGCATTCA 58.906 40.909 8.91 9.84 38.53 2.57
1771 1840 3.512329 AGTCCATTCTGCAATGCATTCAA 59.488 39.130 8.91 2.47 38.53 2.69
1772 1841 4.020928 AGTCCATTCTGCAATGCATTCAAA 60.021 37.500 8.91 1.65 38.53 2.69
1773 1842 4.873827 GTCCATTCTGCAATGCATTCAAAT 59.126 37.500 8.91 4.06 38.53 2.32
1774 1843 4.873259 TCCATTCTGCAATGCATTCAAATG 59.127 37.500 8.91 15.08 38.53 2.32
1775 1844 4.634004 CCATTCTGCAATGCATTCAAATGT 59.366 37.500 8.91 0.00 38.53 2.71
1776 1845 5.123186 CCATTCTGCAATGCATTCAAATGTT 59.877 36.000 8.91 0.00 38.53 2.71
1777 1846 6.314152 CCATTCTGCAATGCATTCAAATGTTA 59.686 34.615 8.91 0.00 38.53 2.41
1778 1847 6.954616 TTCTGCAATGCATTCAAATGTTAG 57.045 33.333 8.91 2.66 38.13 2.34
1779 1848 6.028146 TCTGCAATGCATTCAAATGTTAGT 57.972 33.333 8.91 0.00 38.13 2.24
1780 1849 6.457355 TCTGCAATGCATTCAAATGTTAGTT 58.543 32.000 8.91 0.00 38.13 2.24
1781 1850 6.930164 TCTGCAATGCATTCAAATGTTAGTTT 59.070 30.769 8.91 0.00 38.13 2.66
1782 1851 7.441760 TCTGCAATGCATTCAAATGTTAGTTTT 59.558 29.630 8.91 0.00 38.13 2.43
1783 1852 7.574496 TGCAATGCATTCAAATGTTAGTTTTC 58.426 30.769 9.53 0.00 38.65 2.29
1784 1853 7.226128 TGCAATGCATTCAAATGTTAGTTTTCA 59.774 29.630 9.53 0.00 38.65 2.69
1809 1878 2.425668 TCAGTCCATTCTGCAATGCATG 59.574 45.455 8.91 4.13 38.53 4.06
1937 2053 6.016024 TGCAATTCATAGTGGATAATTGGAGC 60.016 38.462 0.00 0.00 38.92 4.70
1978 2094 8.395633 CGTCCCAAATTTAGGTAAATAGTCTTG 58.604 37.037 2.44 0.00 35.00 3.02
1997 2113 5.473504 GTCTTGTTGGTATGGTCAATTCACT 59.526 40.000 0.00 0.00 0.00 3.41
2074 2190 8.929260 TGGTTTTCTCATATGCAGATTCATAT 57.071 30.769 0.00 0.00 39.51 1.78
2152 2339 2.294791 AGTGTCTGGAAGTGAGTTCTCG 59.705 50.000 0.00 0.00 35.25 4.04
2283 2473 7.041712 GCTAAAGAGAGATGGCATAACTAAACC 60.042 40.741 0.00 0.00 0.00 3.27
2355 2553 7.875327 TCAAGCAAGTAAACTTAGGTTTCTT 57.125 32.000 6.20 7.57 43.62 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.868200 GATAATGGGCCGGGCTGGG 62.868 68.421 28.80 2.24 38.63 4.45
3 4 2.282462 GATAATGGGCCGGGCTGG 60.282 66.667 28.80 8.39 42.50 4.85
4 5 1.601759 CTGATAATGGGCCGGGCTG 60.602 63.158 28.80 4.42 0.00 4.85
5 6 1.770110 TCTGATAATGGGCCGGGCT 60.770 57.895 28.80 11.06 0.00 5.19
6 7 1.302832 CTCTGATAATGGGCCGGGC 60.303 63.158 22.00 22.00 0.00 6.13
7 8 0.764890 TTCTCTGATAATGGGCCGGG 59.235 55.000 2.18 0.00 0.00 5.73
8 9 2.158755 AGTTTCTCTGATAATGGGCCGG 60.159 50.000 0.00 0.00 0.00 6.13
9 10 2.874701 CAGTTTCTCTGATAATGGGCCG 59.125 50.000 0.00 0.00 46.27 6.13
10 11 4.156455 TCAGTTTCTCTGATAATGGGCC 57.844 45.455 0.00 0.00 46.77 5.80
20 21 1.417890 ACCCCACAGTCAGTTTCTCTG 59.582 52.381 0.00 0.00 44.85 3.35
21 22 1.694696 GACCCCACAGTCAGTTTCTCT 59.305 52.381 0.00 0.00 36.73 3.10
22 23 1.416401 TGACCCCACAGTCAGTTTCTC 59.584 52.381 0.00 0.00 41.78 2.87
23 24 1.507140 TGACCCCACAGTCAGTTTCT 58.493 50.000 0.00 0.00 41.78 2.52
24 25 1.141053 AGTGACCCCACAGTCAGTTTC 59.859 52.381 0.00 0.00 46.00 2.78
25 26 1.213296 AGTGACCCCACAGTCAGTTT 58.787 50.000 0.00 0.00 46.00 2.66
26 27 2.930935 AGTGACCCCACAGTCAGTT 58.069 52.632 0.00 0.00 46.00 3.16
29 30 4.718143 TGAGTGACCCCACAGTCA 57.282 55.556 0.00 0.00 45.54 3.41
30 31 0.976641 TGATGAGTGACCCCACAGTC 59.023 55.000 0.00 0.00 45.54 3.51
31 32 1.556911 GATGATGAGTGACCCCACAGT 59.443 52.381 0.00 0.00 45.54 3.55
32 33 1.556451 TGATGATGAGTGACCCCACAG 59.444 52.381 0.00 0.00 45.54 3.66
33 34 1.655372 TGATGATGAGTGACCCCACA 58.345 50.000 0.00 0.00 45.54 4.17
34 35 2.787473 TTGATGATGAGTGACCCCAC 57.213 50.000 0.00 0.00 43.50 4.61
35 36 2.025981 CCTTTGATGATGAGTGACCCCA 60.026 50.000 0.00 0.00 0.00 4.96
36 37 2.648059 CCTTTGATGATGAGTGACCCC 58.352 52.381 0.00 0.00 0.00 4.95
37 38 2.648059 CCCTTTGATGATGAGTGACCC 58.352 52.381 0.00 0.00 0.00 4.46
38 39 2.019984 GCCCTTTGATGATGAGTGACC 58.980 52.381 0.00 0.00 0.00 4.02
39 40 1.667724 CGCCCTTTGATGATGAGTGAC 59.332 52.381 0.00 0.00 0.00 3.67
40 41 1.554617 TCGCCCTTTGATGATGAGTGA 59.445 47.619 0.00 0.00 0.00 3.41
41 42 2.028420 TCGCCCTTTGATGATGAGTG 57.972 50.000 0.00 0.00 0.00 3.51
42 43 2.359900 GTTCGCCCTTTGATGATGAGT 58.640 47.619 0.00 0.00 0.00 3.41
43 44 1.672881 GGTTCGCCCTTTGATGATGAG 59.327 52.381 0.00 0.00 0.00 2.90
44 45 1.004161 TGGTTCGCCCTTTGATGATGA 59.996 47.619 0.00 0.00 36.08 2.92
45 46 1.402968 CTGGTTCGCCCTTTGATGATG 59.597 52.381 0.00 0.00 36.08 3.07
46 47 1.281867 TCTGGTTCGCCCTTTGATGAT 59.718 47.619 0.00 0.00 36.08 2.45
47 48 0.690192 TCTGGTTCGCCCTTTGATGA 59.310 50.000 0.00 0.00 36.08 2.92
48 49 0.804989 GTCTGGTTCGCCCTTTGATG 59.195 55.000 0.00 0.00 36.08 3.07
49 50 0.322546 GGTCTGGTTCGCCCTTTGAT 60.323 55.000 0.00 0.00 36.08 2.57
50 51 1.072505 GGTCTGGTTCGCCCTTTGA 59.927 57.895 0.00 0.00 36.08 2.69
51 52 1.228124 TGGTCTGGTTCGCCCTTTG 60.228 57.895 0.00 0.00 36.08 2.77
52 53 1.228154 GTGGTCTGGTTCGCCCTTT 60.228 57.895 0.00 0.00 36.08 3.11
53 54 1.990160 TTGTGGTCTGGTTCGCCCTT 61.990 55.000 0.00 0.00 36.08 3.95
54 55 1.990160 TTTGTGGTCTGGTTCGCCCT 61.990 55.000 0.00 0.00 36.08 5.19
55 56 1.104577 TTTTGTGGTCTGGTTCGCCC 61.105 55.000 0.00 0.00 36.08 6.13
56 57 0.030235 GTTTTGTGGTCTGGTTCGCC 59.970 55.000 0.00 0.00 37.92 5.54
57 58 0.316689 CGTTTTGTGGTCTGGTTCGC 60.317 55.000 0.00 0.00 0.00 4.70
58 59 0.306533 CCGTTTTGTGGTCTGGTTCG 59.693 55.000 0.00 0.00 0.00 3.95
59 60 0.030235 GCCGTTTTGTGGTCTGGTTC 59.970 55.000 0.00 0.00 0.00 3.62
60 61 0.681564 TGCCGTTTTGTGGTCTGGTT 60.682 50.000 0.00 0.00 0.00 3.67
61 62 1.077357 TGCCGTTTTGTGGTCTGGT 60.077 52.632 0.00 0.00 0.00 4.00
62 63 1.358759 GTGCCGTTTTGTGGTCTGG 59.641 57.895 0.00 0.00 0.00 3.86
63 64 1.101049 AGGTGCCGTTTTGTGGTCTG 61.101 55.000 0.00 0.00 0.00 3.51
64 65 0.818040 GAGGTGCCGTTTTGTGGTCT 60.818 55.000 0.00 0.00 0.00 3.85
65 66 0.818040 AGAGGTGCCGTTTTGTGGTC 60.818 55.000 0.00 0.00 0.00 4.02
66 67 0.818040 GAGAGGTGCCGTTTTGTGGT 60.818 55.000 0.00 0.00 0.00 4.16
67 68 0.535102 AGAGAGGTGCCGTTTTGTGG 60.535 55.000 0.00 0.00 0.00 4.17
68 69 0.868406 GAGAGAGGTGCCGTTTTGTG 59.132 55.000 0.00 0.00 0.00 3.33
69 70 0.468226 TGAGAGAGGTGCCGTTTTGT 59.532 50.000 0.00 0.00 0.00 2.83
70 71 1.593196 TTGAGAGAGGTGCCGTTTTG 58.407 50.000 0.00 0.00 0.00 2.44
71 72 2.224523 TGATTGAGAGAGGTGCCGTTTT 60.225 45.455 0.00 0.00 0.00 2.43
72 73 1.347707 TGATTGAGAGAGGTGCCGTTT 59.652 47.619 0.00 0.00 0.00 3.60
73 74 0.976641 TGATTGAGAGAGGTGCCGTT 59.023 50.000 0.00 0.00 0.00 4.44
74 75 0.976641 TTGATTGAGAGAGGTGCCGT 59.023 50.000 0.00 0.00 0.00 5.68
75 76 1.338105 TGTTGATTGAGAGAGGTGCCG 60.338 52.381 0.00 0.00 0.00 5.69
76 77 2.479566 TGTTGATTGAGAGAGGTGCC 57.520 50.000 0.00 0.00 0.00 5.01
77 78 2.158449 CGTTGTTGATTGAGAGAGGTGC 59.842 50.000 0.00 0.00 0.00 5.01
78 79 2.738846 CCGTTGTTGATTGAGAGAGGTG 59.261 50.000 0.00 0.00 0.00 4.00
79 80 2.872038 GCCGTTGTTGATTGAGAGAGGT 60.872 50.000 0.00 0.00 0.00 3.85
80 81 1.734465 GCCGTTGTTGATTGAGAGAGG 59.266 52.381 0.00 0.00 0.00 3.69
81 82 1.734465 GGCCGTTGTTGATTGAGAGAG 59.266 52.381 0.00 0.00 0.00 3.20
82 83 1.347707 AGGCCGTTGTTGATTGAGAGA 59.652 47.619 0.00 0.00 0.00 3.10
83 84 1.734465 GAGGCCGTTGTTGATTGAGAG 59.266 52.381 0.00 0.00 0.00 3.20
84 85 1.071542 TGAGGCCGTTGTTGATTGAGA 59.928 47.619 0.00 0.00 0.00 3.27
85 86 1.522668 TGAGGCCGTTGTTGATTGAG 58.477 50.000 0.00 0.00 0.00 3.02
86 87 1.974265 TTGAGGCCGTTGTTGATTGA 58.026 45.000 0.00 0.00 0.00 2.57
87 88 2.791383 TTTGAGGCCGTTGTTGATTG 57.209 45.000 0.00 0.00 0.00 2.67
88 89 3.118956 TGTTTTTGAGGCCGTTGTTGATT 60.119 39.130 0.00 0.00 0.00 2.57
89 90 2.428890 TGTTTTTGAGGCCGTTGTTGAT 59.571 40.909 0.00 0.00 0.00 2.57
90 91 1.819288 TGTTTTTGAGGCCGTTGTTGA 59.181 42.857 0.00 0.00 0.00 3.18
91 92 2.285827 TGTTTTTGAGGCCGTTGTTG 57.714 45.000 0.00 0.00 0.00 3.33
92 93 2.028930 TGTTGTTTTTGAGGCCGTTGTT 60.029 40.909 0.00 0.00 0.00 2.83
93 94 1.546476 TGTTGTTTTTGAGGCCGTTGT 59.454 42.857 0.00 0.00 0.00 3.32
94 95 2.285827 TGTTGTTTTTGAGGCCGTTG 57.714 45.000 0.00 0.00 0.00 4.10
95 96 2.028930 TGTTGTTGTTTTTGAGGCCGTT 60.029 40.909 0.00 0.00 0.00 4.44
96 97 1.546476 TGTTGTTGTTTTTGAGGCCGT 59.454 42.857 0.00 0.00 0.00 5.68
97 98 2.285827 TGTTGTTGTTTTTGAGGCCG 57.714 45.000 0.00 0.00 0.00 6.13
98 99 3.330267 TGTTGTTGTTGTTTTTGAGGCC 58.670 40.909 0.00 0.00 0.00 5.19
99 100 4.212214 TGTTGTTGTTGTTGTTTTTGAGGC 59.788 37.500 0.00 0.00 0.00 4.70
100 101 5.914085 TGTTGTTGTTGTTGTTTTTGAGG 57.086 34.783 0.00 0.00 0.00 3.86
101 102 6.709643 TGTTGTTGTTGTTGTTGTTTTTGAG 58.290 32.000 0.00 0.00 0.00 3.02
102 103 6.662414 TGTTGTTGTTGTTGTTGTTTTTGA 57.338 29.167 0.00 0.00 0.00 2.69
103 104 6.742718 TGTTGTTGTTGTTGTTGTTGTTTTTG 59.257 30.769 0.00 0.00 0.00 2.44
104 105 6.842163 TGTTGTTGTTGTTGTTGTTGTTTTT 58.158 28.000 0.00 0.00 0.00 1.94
105 106 6.422776 TGTTGTTGTTGTTGTTGTTGTTTT 57.577 29.167 0.00 0.00 0.00 2.43
106 107 6.128282 TGTTGTTGTTGTTGTTGTTGTTGTTT 60.128 30.769 0.00 0.00 0.00 2.83
107 108 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
108 109 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
109 110 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
110 111 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
111 112 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
112 113 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
113 114 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
114 115 6.422776 TTTTGTTGTTGTTGTTGTTGTTGT 57.577 29.167 0.00 0.00 0.00 3.32
115 116 6.576684 GGATTTTGTTGTTGTTGTTGTTGTTG 59.423 34.615 0.00 0.00 0.00 3.33
116 117 6.484977 AGGATTTTGTTGTTGTTGTTGTTGTT 59.515 30.769 0.00 0.00 0.00 2.83
117 118 5.994668 AGGATTTTGTTGTTGTTGTTGTTGT 59.005 32.000 0.00 0.00 0.00 3.32
118 119 6.368516 AGAGGATTTTGTTGTTGTTGTTGTTG 59.631 34.615 0.00 0.00 0.00 3.33
119 120 6.463360 AGAGGATTTTGTTGTTGTTGTTGTT 58.537 32.000 0.00 0.00 0.00 2.83
120 121 6.036577 AGAGGATTTTGTTGTTGTTGTTGT 57.963 33.333 0.00 0.00 0.00 3.32
121 122 6.672836 GCAAGAGGATTTTGTTGTTGTTGTTG 60.673 38.462 0.00 0.00 0.00 3.33
122 123 5.351189 GCAAGAGGATTTTGTTGTTGTTGTT 59.649 36.000 0.00 0.00 0.00 2.83
123 124 4.869861 GCAAGAGGATTTTGTTGTTGTTGT 59.130 37.500 0.00 0.00 0.00 3.32
124 125 5.111293 AGCAAGAGGATTTTGTTGTTGTTG 58.889 37.500 0.00 0.00 0.00 3.33
125 126 5.127682 AGAGCAAGAGGATTTTGTTGTTGTT 59.872 36.000 0.00 0.00 0.00 2.83
126 127 4.646492 AGAGCAAGAGGATTTTGTTGTTGT 59.354 37.500 0.00 0.00 0.00 3.32
127 128 5.192327 AGAGCAAGAGGATTTTGTTGTTG 57.808 39.130 0.00 0.00 0.00 3.33
128 129 4.023707 CGAGAGCAAGAGGATTTTGTTGTT 60.024 41.667 0.00 0.00 0.00 2.83
129 130 3.499918 CGAGAGCAAGAGGATTTTGTTGT 59.500 43.478 0.00 0.00 0.00 3.32
130 131 4.075763 CGAGAGCAAGAGGATTTTGTTG 57.924 45.455 0.00 0.00 0.00 3.33
160 163 4.419921 AATGGGGAACGACGGCCC 62.420 66.667 17.08 17.08 43.91 5.80
208 228 2.301505 GCATGGCGTAGTGCTGTAG 58.698 57.895 0.00 0.00 45.43 2.74
209 229 4.513519 GCATGGCGTAGTGCTGTA 57.486 55.556 0.00 0.00 45.43 2.74
213 233 3.264897 CGGAGCATGGCGTAGTGC 61.265 66.667 0.00 0.72 45.38 4.40
236 256 0.767375 ATGGGCGAGGATATGCTTGT 59.233 50.000 12.61 0.00 0.00 3.16
237 257 1.002888 AGATGGGCGAGGATATGCTTG 59.997 52.381 7.11 7.11 0.00 4.01
239 259 0.901124 GAGATGGGCGAGGATATGCT 59.099 55.000 0.00 0.00 0.00 3.79
241 261 1.480137 GAGGAGATGGGCGAGGATATG 59.520 57.143 0.00 0.00 0.00 1.78
242 262 1.360852 AGAGGAGATGGGCGAGGATAT 59.639 52.381 0.00 0.00 0.00 1.63
243 263 0.780637 AGAGGAGATGGGCGAGGATA 59.219 55.000 0.00 0.00 0.00 2.59
255 275 0.707024 TGGCTGGAGAAGAGAGGAGA 59.293 55.000 0.00 0.00 0.00 3.71
407 430 4.432741 GGTGGGAGAGCTTGGGGC 62.433 72.222 0.00 0.00 42.19 5.80
580 603 2.100603 CGAAGGCGAGAGACCGAC 59.899 66.667 0.00 0.00 43.69 4.79
604 627 4.104417 GAGCGAGACGAGGCGTGT 62.104 66.667 0.00 0.00 41.37 4.49
707 730 1.688884 GAGCTCCTCTTGAGGGCCT 60.689 63.158 5.25 5.25 41.73 5.19
728 751 1.402984 CGAGGTCAGACGAAAGAAGGG 60.403 57.143 0.00 0.00 0.00 3.95
865 888 2.045926 GCATGCCACGAGTCCCTT 60.046 61.111 6.36 0.00 0.00 3.95
916 939 2.942879 CAGCGCGTGCCTAAACAA 59.057 55.556 19.02 0.00 44.31 2.83
1054 1077 2.612972 GCAGTGATTCTTTGGACCTCGA 60.613 50.000 0.00 0.00 0.00 4.04
1124 1147 1.307355 TACGGGTCGATGAGCAACGA 61.307 55.000 0.00 0.00 36.18 3.85
1126 1149 1.593006 CATTACGGGTCGATGAGCAAC 59.407 52.381 0.00 0.00 0.00 4.17
1158 1203 2.123683 CTGAGCCGGCCCTCTAGA 60.124 66.667 26.15 0.00 33.02 2.43
1399 1445 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1400 1446 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1401 1447 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1402 1448 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1419 1465 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
1420 1466 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
1424 1470 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
1425 1471 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
1426 1472 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
1427 1473 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
1428 1474 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
1429 1475 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
1430 1476 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
1431 1477 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
1432 1478 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
1433 1479 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
1434 1480 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
1435 1481 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
1436 1482 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
1437 1483 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
1438 1484 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
1439 1485 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
1440 1486 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
1441 1487 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
1442 1488 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
1443 1489 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
1444 1490 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
1445 1491 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
1447 1493 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
1480 1526 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1481 1527 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1482 1528 5.149054 CGGAGCAAAATGAGTGAATCTAC 57.851 43.478 0.00 0.00 0.00 2.59
1500 1546 2.370281 ACAAGTGACTACATGCGGAG 57.630 50.000 0.00 0.00 0.00 4.63
1501 1547 2.036604 TCAACAAGTGACTACATGCGGA 59.963 45.455 0.00 0.00 0.00 5.54
1502 1548 2.412870 TCAACAAGTGACTACATGCGG 58.587 47.619 0.00 0.00 0.00 5.69
1503 1549 4.466567 TTTCAACAAGTGACTACATGCG 57.533 40.909 0.00 0.00 35.39 4.73
1504 1550 6.148480 AGAGATTTCAACAAGTGACTACATGC 59.852 38.462 0.00 0.00 35.39 4.06
1505 1551 7.664082 AGAGATTTCAACAAGTGACTACATG 57.336 36.000 0.00 0.00 35.39 3.21
1506 1552 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
1507 1553 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
1508 1554 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
1509 1555 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
1510 1556 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
1511 1557 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
1512 1558 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
1513 1559 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
1514 1560 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
1517 1563 9.559732 TCATTTGTCTTTCTAGAGATTTCAACA 57.440 29.630 0.00 0.00 0.00 3.33
1520 1566 8.712363 CGTTCATTTGTCTTTCTAGAGATTTCA 58.288 33.333 0.00 0.00 0.00 2.69
1521 1567 8.171840 CCGTTCATTTGTCTTTCTAGAGATTTC 58.828 37.037 0.00 0.00 0.00 2.17
1522 1568 7.878127 TCCGTTCATTTGTCTTTCTAGAGATTT 59.122 33.333 0.00 0.00 0.00 2.17
1523 1569 7.386851 TCCGTTCATTTGTCTTTCTAGAGATT 58.613 34.615 0.00 0.00 0.00 2.40
1524 1570 6.936279 TCCGTTCATTTGTCTTTCTAGAGAT 58.064 36.000 0.00 0.00 0.00 2.75
1525 1571 6.340962 TCCGTTCATTTGTCTTTCTAGAGA 57.659 37.500 0.00 0.00 0.00 3.10
1526 1572 5.578727 CCTCCGTTCATTTGTCTTTCTAGAG 59.421 44.000 0.00 0.00 0.00 2.43
1527 1573 5.479306 CCTCCGTTCATTTGTCTTTCTAGA 58.521 41.667 0.00 0.00 0.00 2.43
1528 1574 4.631813 CCCTCCGTTCATTTGTCTTTCTAG 59.368 45.833 0.00 0.00 0.00 2.43
1529 1575 4.285003 TCCCTCCGTTCATTTGTCTTTCTA 59.715 41.667 0.00 0.00 0.00 2.10
1530 1576 3.072476 TCCCTCCGTTCATTTGTCTTTCT 59.928 43.478 0.00 0.00 0.00 2.52
1531 1577 3.408634 TCCCTCCGTTCATTTGTCTTTC 58.591 45.455 0.00 0.00 0.00 2.62
1532 1578 3.181443 ACTCCCTCCGTTCATTTGTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
1533 1579 2.372172 ACTCCCTCCGTTCATTTGTCTT 59.628 45.455 0.00 0.00 0.00 3.01
1534 1580 1.978580 ACTCCCTCCGTTCATTTGTCT 59.021 47.619 0.00 0.00 0.00 3.41
1535 1581 2.474410 ACTCCCTCCGTTCATTTGTC 57.526 50.000 0.00 0.00 0.00 3.18
1536 1582 4.569719 ATTACTCCCTCCGTTCATTTGT 57.430 40.909 0.00 0.00 0.00 2.83
1537 1583 4.700213 ACAATTACTCCCTCCGTTCATTTG 59.300 41.667 0.00 0.00 0.00 2.32
1538 1584 4.700213 CACAATTACTCCCTCCGTTCATTT 59.300 41.667 0.00 0.00 0.00 2.32
1539 1585 4.261801 CACAATTACTCCCTCCGTTCATT 58.738 43.478 0.00 0.00 0.00 2.57
1540 1586 3.263425 ACACAATTACTCCCTCCGTTCAT 59.737 43.478 0.00 0.00 0.00 2.57
1541 1587 2.635915 ACACAATTACTCCCTCCGTTCA 59.364 45.455 0.00 0.00 0.00 3.18
1542 1588 3.000727 CACACAATTACTCCCTCCGTTC 58.999 50.000 0.00 0.00 0.00 3.95
1543 1589 2.874457 GCACACAATTACTCCCTCCGTT 60.874 50.000 0.00 0.00 0.00 4.44
1544 1590 1.338769 GCACACAATTACTCCCTCCGT 60.339 52.381 0.00 0.00 0.00 4.69
1545 1591 1.066143 AGCACACAATTACTCCCTCCG 60.066 52.381 0.00 0.00 0.00 4.63
1546 1592 2.359900 CAGCACACAATTACTCCCTCC 58.640 52.381 0.00 0.00 0.00 4.30
1547 1593 2.290323 ACCAGCACACAATTACTCCCTC 60.290 50.000 0.00 0.00 0.00 4.30
1548 1594 1.705186 ACCAGCACACAATTACTCCCT 59.295 47.619 0.00 0.00 0.00 4.20
1549 1595 2.200373 ACCAGCACACAATTACTCCC 57.800 50.000 0.00 0.00 0.00 4.30
1550 1596 2.884639 ACAACCAGCACACAATTACTCC 59.115 45.455 0.00 0.00 0.00 3.85
1551 1597 3.815401 AGACAACCAGCACACAATTACTC 59.185 43.478 0.00 0.00 0.00 2.59
1552 1598 3.565482 CAGACAACCAGCACACAATTACT 59.435 43.478 0.00 0.00 0.00 2.24
1588 1634 3.589951 ATGACCAAGCCAGCATCTAAT 57.410 42.857 0.00 0.00 0.00 1.73
1600 1646 2.805671 TCACACGTTAGCAATGACCAAG 59.194 45.455 0.00 0.00 0.00 3.61
1646 1693 7.810282 GCTGAGTGATAGTATTACATACCAGTG 59.190 40.741 7.71 0.00 36.40 3.66
1736 1805 4.630505 CAGAATGGACTGATCTCACACTTG 59.369 45.833 0.00 0.00 39.94 3.16
1763 1832 9.195411 GATCTTGAAAACTAACATTTGAATGCA 57.805 29.630 3.71 0.00 40.04 3.96
1764 1833 9.195411 TGATCTTGAAAACTAACATTTGAATGC 57.805 29.630 3.71 0.00 40.04 3.56
1767 1836 9.950680 GACTGATCTTGAAAACTAACATTTGAA 57.049 29.630 0.00 0.00 0.00 2.69
1768 1837 8.567948 GGACTGATCTTGAAAACTAACATTTGA 58.432 33.333 0.00 0.00 0.00 2.69
1769 1838 8.352201 TGGACTGATCTTGAAAACTAACATTTG 58.648 33.333 0.00 0.00 0.00 2.32
1770 1839 8.463930 TGGACTGATCTTGAAAACTAACATTT 57.536 30.769 0.00 0.00 0.00 2.32
1771 1840 8.641498 ATGGACTGATCTTGAAAACTAACATT 57.359 30.769 0.00 0.00 0.00 2.71
1772 1841 8.641498 AATGGACTGATCTTGAAAACTAACAT 57.359 30.769 0.00 0.00 0.00 2.71
1773 1842 7.939039 AGAATGGACTGATCTTGAAAACTAACA 59.061 33.333 0.00 0.00 0.00 2.41
1774 1843 8.233190 CAGAATGGACTGATCTTGAAAACTAAC 58.767 37.037 0.00 0.00 39.94 2.34
1775 1844 7.094634 GCAGAATGGACTGATCTTGAAAACTAA 60.095 37.037 0.00 0.00 39.94 2.24
1776 1845 6.372659 GCAGAATGGACTGATCTTGAAAACTA 59.627 38.462 0.00 0.00 39.94 2.24
1777 1846 5.182760 GCAGAATGGACTGATCTTGAAAACT 59.817 40.000 0.00 0.00 39.94 2.66
1778 1847 5.048504 TGCAGAATGGACTGATCTTGAAAAC 60.049 40.000 0.00 0.00 39.94 2.43
1779 1848 5.072055 TGCAGAATGGACTGATCTTGAAAA 58.928 37.500 0.00 0.00 39.94 2.29
1780 1849 4.654915 TGCAGAATGGACTGATCTTGAAA 58.345 39.130 0.00 0.00 39.94 2.69
1781 1850 4.290711 TGCAGAATGGACTGATCTTGAA 57.709 40.909 0.00 0.00 39.94 2.69
1782 1851 3.986996 TGCAGAATGGACTGATCTTGA 57.013 42.857 0.00 0.00 39.94 3.02
1783 1852 4.733815 GCATTGCAGAATGGACTGATCTTG 60.734 45.833 3.15 0.00 39.42 3.02
1784 1853 3.380637 GCATTGCAGAATGGACTGATCTT 59.619 43.478 3.15 0.00 39.42 2.40
1792 1861 4.538746 TTTTCATGCATTGCAGAATGGA 57.461 36.364 17.52 2.45 43.65 3.41
1978 2094 4.485163 GCAAGTGAATTGACCATACCAAC 58.515 43.478 0.00 0.00 41.83 3.77
2044 2160 9.374838 GAATCTGCATATGAGAAAACCAAAATT 57.625 29.630 6.97 0.00 0.00 1.82
2113 2300 8.306038 CCAGACACTTTCCATAATTGAATGAAA 58.694 33.333 0.00 0.00 0.00 2.69
2152 2339 4.710375 TGGTTACCTCTGATCCAACTAGAC 59.290 45.833 2.07 0.00 0.00 2.59
2198 2385 2.684881 CCTGCAGCCTAGTTGGTATTTG 59.315 50.000 8.66 0.00 38.35 2.32
2283 2473 2.163412 CTCCTCCAAGTGAGAGTTCGAG 59.837 54.545 0.00 0.00 44.42 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.