Multiple sequence alignment - TraesCS6B01G107500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G107500 chr6B 100.000 2237 0 0 1 2237 87745306 87747542 0.000000e+00 4132
1 TraesCS6B01G107500 chr6B 86.596 567 59 12 1657 2215 89441585 89442142 5.280000e-171 610
2 TraesCS6B01G107500 chr6B 85.806 155 22 0 995 1149 87586312 87586466 4.940000e-37 165
3 TraesCS6B01G107500 chr6B 85.106 141 11 1 953 1083 87597194 87597334 3.880000e-28 135
4 TraesCS6B01G107500 chr6D 89.756 1064 62 22 467 1513 37531091 37532124 0.000000e+00 1317
5 TraesCS6B01G107500 chr6D 86.455 598 59 12 1655 2237 471527898 471528488 8.710000e-179 636
6 TraesCS6B01G107500 chr6D 83.271 269 39 3 995 1257 37455047 37455315 2.220000e-60 243
7 TraesCS6B01G107500 chr6D 80.805 323 44 5 953 1257 37460945 37461267 1.030000e-58 237
8 TraesCS6B01G107500 chr6A 90.824 959 64 16 574 1514 48912511 48913463 0.000000e+00 1262
9 TraesCS6B01G107500 chr6A 85.185 594 69 15 1655 2237 419650936 419651521 1.910000e-165 592
10 TraesCS6B01G107500 chr6A 80.062 321 48 4 953 1257 48881128 48881448 8.040000e-55 224
11 TraesCS6B01G107500 chr6A 90.244 123 6 3 467 588 48912380 48912497 2.970000e-34 156
12 TraesCS6B01G107500 chr7B 94.824 483 10 7 1 468 667781870 667782352 0.000000e+00 739
13 TraesCS6B01G107500 chr7B 94.094 491 13 9 1 475 468156926 468157416 0.000000e+00 732
14 TraesCS6B01G107500 chr7B 93.661 489 15 1 1 473 614180330 614179842 0.000000e+00 717
15 TraesCS6B01G107500 chr2B 94.094 491 12 2 1 475 296026810 296026321 0.000000e+00 730
16 TraesCS6B01G107500 chr2B 93.103 493 18 1 1 477 683096530 683096038 0.000000e+00 708
17 TraesCS6B01G107500 chr2B 86.542 587 64 9 1657 2235 73956814 73957393 1.130000e-177 632
18 TraesCS6B01G107500 chr1B 94.410 483 11 1 1 467 295769218 295768736 0.000000e+00 728
19 TraesCS6B01G107500 chr1B 92.418 488 20 8 1 471 211606859 211606372 0.000000e+00 680
20 TraesCS6B01G107500 chr1B 86.622 598 58 12 1655 2235 579005628 579006220 1.870000e-180 641
21 TraesCS6B01G107500 chr1B 85.953 598 60 18 1655 2237 433418939 433418351 3.160000e-173 617
22 TraesCS6B01G107500 chr3B 93.686 491 13 5 1 475 734166066 734165578 0.000000e+00 719
23 TraesCS6B01G107500 chr3B 92.800 500 18 9 1 483 247809455 247808957 0.000000e+00 708
24 TraesCS6B01G107500 chr5B 93.776 482 13 5 1 466 415103997 415103517 0.000000e+00 708
25 TraesCS6B01G107500 chr5B 93.075 491 18 7 1 475 203679074 203678584 0.000000e+00 704
26 TraesCS6B01G107500 chr5B 92.445 503 18 8 1 488 155711446 155711943 0.000000e+00 701
27 TraesCS6B01G107500 chr5B 86.271 590 61 10 1656 2232 649452721 649453303 6.780000e-175 623
28 TraesCS6B01G107500 chrUn 93.361 482 16 5 1 466 413434874 413434393 0.000000e+00 699
29 TraesCS6B01G107500 chrUn 93.154 482 17 5 1 466 333467652 333467171 0.000000e+00 693
30 TraesCS6B01G107500 chr5A 93.333 465 24 3 1 460 8041354 8041816 0.000000e+00 680
31 TraesCS6B01G107500 chr4B 85.569 589 65 16 1655 2235 129547068 129546492 1.140000e-167 599
32 TraesCS6B01G107500 chr5D 85.235 596 67 15 1655 2237 482527897 482527310 5.320000e-166 593
33 TraesCS6B01G107500 chr4A 85.288 469 52 12 1 460 636378729 636379189 3.360000e-128 468


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G107500 chr6B 87745306 87747542 2236 False 4132 4132 100.000 1 2237 1 chr6B.!!$F3 2236
1 TraesCS6B01G107500 chr6B 89441585 89442142 557 False 610 610 86.596 1657 2215 1 chr6B.!!$F4 558
2 TraesCS6B01G107500 chr6D 37531091 37532124 1033 False 1317 1317 89.756 467 1513 1 chr6D.!!$F3 1046
3 TraesCS6B01G107500 chr6D 471527898 471528488 590 False 636 636 86.455 1655 2237 1 chr6D.!!$F4 582
4 TraesCS6B01G107500 chr6A 48912380 48913463 1083 False 709 1262 90.534 467 1514 2 chr6A.!!$F3 1047
5 TraesCS6B01G107500 chr6A 419650936 419651521 585 False 592 592 85.185 1655 2237 1 chr6A.!!$F2 582
6 TraesCS6B01G107500 chr2B 73956814 73957393 579 False 632 632 86.542 1657 2235 1 chr2B.!!$F1 578
7 TraesCS6B01G107500 chr1B 579005628 579006220 592 False 641 641 86.622 1655 2235 1 chr1B.!!$F1 580
8 TraesCS6B01G107500 chr1B 433418351 433418939 588 True 617 617 85.953 1655 2237 1 chr1B.!!$R3 582
9 TraesCS6B01G107500 chr5B 649452721 649453303 582 False 623 623 86.271 1656 2232 1 chr5B.!!$F2 576
10 TraesCS6B01G107500 chr4B 129546492 129547068 576 True 599 599 85.569 1655 2235 1 chr4B.!!$R1 580
11 TraesCS6B01G107500 chr5D 482527310 482527897 587 True 593 593 85.235 1655 2237 1 chr5D.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 401 0.316442 CATGCGATGACGTGGCAATC 60.316 55.0 8.5 0.0 44.94 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 1611 0.032912 ATGCACCATGCCCAGATGAA 60.033 50.0 0.0 0.0 44.23 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.846193 TGGCAACTCCAGTACTTTGAC 58.154 47.619 8.83 6.57 40.72 3.18
21 22 2.152016 GGCAACTCCAGTACTTTGACC 58.848 52.381 8.83 6.13 34.01 4.02
22 23 2.486548 GGCAACTCCAGTACTTTGACCA 60.487 50.000 8.83 0.00 34.01 4.02
23 24 3.412386 GCAACTCCAGTACTTTGACCAT 58.588 45.455 8.83 0.00 0.00 3.55
24 25 3.189287 GCAACTCCAGTACTTTGACCATG 59.811 47.826 8.83 0.00 0.00 3.66
25 26 4.641396 CAACTCCAGTACTTTGACCATGA 58.359 43.478 0.00 0.00 0.00 3.07
26 27 4.974645 ACTCCAGTACTTTGACCATGAA 57.025 40.909 0.00 0.00 0.00 2.57
27 28 5.304686 ACTCCAGTACTTTGACCATGAAA 57.695 39.130 0.00 0.00 0.00 2.69
28 29 5.690865 ACTCCAGTACTTTGACCATGAAAA 58.309 37.500 0.00 0.00 0.00 2.29
29 30 6.306987 ACTCCAGTACTTTGACCATGAAAAT 58.693 36.000 0.00 0.00 0.00 1.82
30 31 6.777580 ACTCCAGTACTTTGACCATGAAAATT 59.222 34.615 0.00 0.00 0.00 1.82
31 32 7.942341 ACTCCAGTACTTTGACCATGAAAATTA 59.058 33.333 0.00 0.00 0.00 1.40
32 33 8.877864 TCCAGTACTTTGACCATGAAAATTAT 57.122 30.769 0.00 0.00 0.00 1.28
33 34 9.308000 TCCAGTACTTTGACCATGAAAATTATT 57.692 29.630 0.00 0.00 0.00 1.40
34 35 9.927668 CCAGTACTTTGACCATGAAAATTATTT 57.072 29.630 0.00 0.00 0.00 1.40
57 58 7.814264 TTTTTGTATGAACCATGGCAATTTT 57.186 28.000 13.04 0.00 0.00 1.82
58 59 8.908786 TTTTTGTATGAACCATGGCAATTTTA 57.091 26.923 13.04 0.00 0.00 1.52
59 60 7.897575 TTTGTATGAACCATGGCAATTTTAC 57.102 32.000 13.04 7.36 0.00 2.01
60 61 5.645624 TGTATGAACCATGGCAATTTTACG 58.354 37.500 13.04 0.00 0.00 3.18
61 62 4.799564 ATGAACCATGGCAATTTTACGT 57.200 36.364 13.04 0.00 0.00 3.57
62 63 3.906998 TGAACCATGGCAATTTTACGTG 58.093 40.909 13.04 0.00 0.00 4.49
63 64 2.362169 ACCATGGCAATTTTACGTGC 57.638 45.000 13.04 0.00 40.14 5.34
64 65 1.615883 ACCATGGCAATTTTACGTGCA 59.384 42.857 13.04 0.00 42.74 4.57
65 66 2.233431 ACCATGGCAATTTTACGTGCAT 59.767 40.909 13.04 0.00 42.74 3.96
66 67 2.604011 CCATGGCAATTTTACGTGCATG 59.396 45.455 3.82 3.82 42.74 4.06
67 68 3.252400 CATGGCAATTTTACGTGCATGT 58.748 40.909 17.19 17.19 42.74 3.21
68 69 4.419280 CATGGCAATTTTACGTGCATGTA 58.581 39.130 14.85 14.85 42.74 2.29
69 70 4.710423 TGGCAATTTTACGTGCATGTAT 57.290 36.364 19.17 3.26 42.74 2.29
70 71 4.667262 TGGCAATTTTACGTGCATGTATC 58.333 39.130 19.17 5.34 42.74 2.24
71 72 4.156739 TGGCAATTTTACGTGCATGTATCA 59.843 37.500 19.17 9.53 42.74 2.15
72 73 5.163571 TGGCAATTTTACGTGCATGTATCAT 60.164 36.000 19.17 11.30 42.74 2.45
73 74 5.173673 GGCAATTTTACGTGCATGTATCATG 59.826 40.000 19.17 15.55 42.74 3.07
74 75 5.173673 GCAATTTTACGTGCATGTATCATGG 59.826 40.000 19.17 12.37 40.58 3.66
75 76 3.961477 TTTACGTGCATGTATCATGGC 57.039 42.857 19.17 5.04 0.00 4.40
76 77 2.611225 TACGTGCATGTATCATGGCA 57.389 45.000 14.85 0.00 0.00 4.92
77 78 1.748950 ACGTGCATGTATCATGGCAA 58.251 45.000 10.57 0.00 38.10 4.52
78 79 2.300433 ACGTGCATGTATCATGGCAAT 58.700 42.857 10.57 0.00 38.10 3.56
79 80 2.689471 ACGTGCATGTATCATGGCAATT 59.311 40.909 10.57 0.00 38.10 2.32
80 81 3.130869 ACGTGCATGTATCATGGCAATTT 59.869 39.130 10.57 0.00 38.10 1.82
81 82 4.114073 CGTGCATGTATCATGGCAATTTT 58.886 39.130 10.96 0.00 38.10 1.82
82 83 5.163571 ACGTGCATGTATCATGGCAATTTTA 60.164 36.000 10.57 0.00 38.10 1.52
83 84 5.400188 CGTGCATGTATCATGGCAATTTTAG 59.600 40.000 10.96 0.00 38.10 1.85
84 85 6.275335 GTGCATGTATCATGGCAATTTTAGT 58.725 36.000 10.96 0.00 38.10 2.24
85 86 6.757947 GTGCATGTATCATGGCAATTTTAGTT 59.242 34.615 10.96 0.00 38.10 2.24
86 87 7.278424 GTGCATGTATCATGGCAATTTTAGTTT 59.722 33.333 10.96 0.00 38.10 2.66
87 88 8.473219 TGCATGTATCATGGCAATTTTAGTTTA 58.527 29.630 10.96 0.00 32.54 2.01
88 89 9.480053 GCATGTATCATGGCAATTTTAGTTTAT 57.520 29.630 10.96 0.00 0.00 1.40
90 91 9.985730 ATGTATCATGGCAATTTTAGTTTATGG 57.014 29.630 0.00 0.00 0.00 2.74
91 92 8.976353 TGTATCATGGCAATTTTAGTTTATGGT 58.024 29.630 0.00 0.00 0.00 3.55
92 93 9.816354 GTATCATGGCAATTTTAGTTTATGGTT 57.184 29.630 0.00 0.00 0.00 3.67
93 94 8.947055 ATCATGGCAATTTTAGTTTATGGTTC 57.053 30.769 0.00 0.00 0.00 3.62
94 95 7.901029 TCATGGCAATTTTAGTTTATGGTTCA 58.099 30.769 0.00 0.00 0.00 3.18
95 96 8.538701 TCATGGCAATTTTAGTTTATGGTTCAT 58.461 29.630 0.00 0.00 0.00 2.57
96 97 8.605746 CATGGCAATTTTAGTTTATGGTTCATG 58.394 33.333 0.00 0.00 0.00 3.07
97 98 7.102346 TGGCAATTTTAGTTTATGGTTCATGG 58.898 34.615 0.00 0.00 0.00 3.66
98 99 6.037062 GGCAATTTTAGTTTATGGTTCATGGC 59.963 38.462 0.00 0.00 0.00 4.40
99 100 6.593382 GCAATTTTAGTTTATGGTTCATGGCA 59.407 34.615 0.00 0.00 0.00 4.92
100 101 7.118971 GCAATTTTAGTTTATGGTTCATGGCAA 59.881 33.333 0.00 0.00 0.00 4.52
101 102 8.658609 CAATTTTAGTTTATGGTTCATGGCAAG 58.341 33.333 0.00 0.00 0.00 4.01
102 103 6.909550 TTTAGTTTATGGTTCATGGCAAGT 57.090 33.333 0.00 0.00 0.00 3.16
103 104 6.509418 TTAGTTTATGGTTCATGGCAAGTC 57.491 37.500 0.00 0.00 0.00 3.01
104 105 4.666512 AGTTTATGGTTCATGGCAAGTCT 58.333 39.130 0.00 0.00 0.00 3.24
105 106 5.815581 AGTTTATGGTTCATGGCAAGTCTA 58.184 37.500 0.00 0.00 0.00 2.59
106 107 5.882557 AGTTTATGGTTCATGGCAAGTCTAG 59.117 40.000 0.00 0.00 0.00 2.43
107 108 5.435686 TTATGGTTCATGGCAAGTCTAGT 57.564 39.130 0.00 0.00 0.00 2.57
108 109 3.788227 TGGTTCATGGCAAGTCTAGTT 57.212 42.857 0.00 0.00 0.00 2.24
109 110 4.098914 TGGTTCATGGCAAGTCTAGTTT 57.901 40.909 0.00 0.00 0.00 2.66
110 111 4.072131 TGGTTCATGGCAAGTCTAGTTTC 58.928 43.478 0.00 0.00 0.00 2.78
111 112 4.202461 TGGTTCATGGCAAGTCTAGTTTCT 60.202 41.667 0.00 0.00 0.00 2.52
112 113 4.762251 GGTTCATGGCAAGTCTAGTTTCTT 59.238 41.667 0.00 0.00 0.00 2.52
113 114 5.938125 GGTTCATGGCAAGTCTAGTTTCTTA 59.062 40.000 0.00 0.00 0.00 2.10
114 115 6.430000 GGTTCATGGCAAGTCTAGTTTCTTAA 59.570 38.462 0.00 0.00 0.00 1.85
115 116 7.121315 GGTTCATGGCAAGTCTAGTTTCTTAAT 59.879 37.037 0.00 0.00 0.00 1.40
116 117 8.515414 GTTCATGGCAAGTCTAGTTTCTTAATT 58.485 33.333 0.00 0.00 0.00 1.40
117 118 8.268850 TCATGGCAAGTCTAGTTTCTTAATTC 57.731 34.615 0.00 0.00 0.00 2.17
118 119 7.336931 TCATGGCAAGTCTAGTTTCTTAATTCC 59.663 37.037 0.00 0.00 0.00 3.01
119 120 5.944007 TGGCAAGTCTAGTTTCTTAATTCCC 59.056 40.000 0.00 0.00 0.00 3.97
120 121 5.357314 GGCAAGTCTAGTTTCTTAATTCCCC 59.643 44.000 0.00 0.00 0.00 4.81
121 122 5.064834 GCAAGTCTAGTTTCTTAATTCCCCG 59.935 44.000 0.00 0.00 0.00 5.73
122 123 6.171213 CAAGTCTAGTTTCTTAATTCCCCGT 58.829 40.000 0.00 0.00 0.00 5.28
123 124 6.370186 AGTCTAGTTTCTTAATTCCCCGTT 57.630 37.500 0.00 0.00 0.00 4.44
124 125 6.776744 AGTCTAGTTTCTTAATTCCCCGTTT 58.223 36.000 0.00 0.00 0.00 3.60
125 126 7.229308 AGTCTAGTTTCTTAATTCCCCGTTTT 58.771 34.615 0.00 0.00 0.00 2.43
126 127 8.377799 AGTCTAGTTTCTTAATTCCCCGTTTTA 58.622 33.333 0.00 0.00 0.00 1.52
127 128 9.170734 GTCTAGTTTCTTAATTCCCCGTTTTAT 57.829 33.333 0.00 0.00 0.00 1.40
132 133 9.064804 GTTTCTTAATTCCCCGTTTTATAAACG 57.935 33.333 15.55 15.55 42.74 3.60
133 134 7.920160 TCTTAATTCCCCGTTTTATAAACGT 57.080 32.000 19.43 6.30 41.64 3.99
134 135 7.973601 TCTTAATTCCCCGTTTTATAAACGTC 58.026 34.615 19.43 3.24 41.64 4.34
135 136 7.605691 TCTTAATTCCCCGTTTTATAAACGTCA 59.394 33.333 19.43 4.36 41.64 4.35
136 137 6.572167 AATTCCCCGTTTTATAAACGTCAA 57.428 33.333 19.43 11.25 41.64 3.18
137 138 6.572167 ATTCCCCGTTTTATAAACGTCAAA 57.428 33.333 19.43 12.07 41.64 2.69
138 139 6.382869 TTCCCCGTTTTATAAACGTCAAAA 57.617 33.333 19.43 8.57 41.64 2.44
139 140 6.572167 TCCCCGTTTTATAAACGTCAAAAT 57.428 33.333 19.43 0.00 41.64 1.82
140 141 6.979465 TCCCCGTTTTATAAACGTCAAAATT 58.021 32.000 19.43 0.00 41.64 1.82
141 142 7.432059 TCCCCGTTTTATAAACGTCAAAATTT 58.568 30.769 19.43 0.00 41.64 1.82
142 143 8.571336 TCCCCGTTTTATAAACGTCAAAATTTA 58.429 29.630 19.43 0.00 41.64 1.40
143 144 8.637704 CCCCGTTTTATAAACGTCAAAATTTAC 58.362 33.333 19.43 0.00 41.64 2.01
144 145 9.396938 CCCGTTTTATAAACGTCAAAATTTACT 57.603 29.630 19.43 0.00 41.64 2.24
181 182 9.674824 GAAGAAAATAGCTGAAACATATCATGG 57.325 33.333 0.00 0.00 33.60 3.66
182 183 7.655490 AGAAAATAGCTGAAACATATCATGGC 58.345 34.615 0.00 0.00 33.60 4.40
183 184 6.964807 AAATAGCTGAAACATATCATGGCA 57.035 33.333 0.00 0.00 33.60 4.92
184 185 6.964807 AATAGCTGAAACATATCATGGCAA 57.035 33.333 0.00 0.00 33.60 4.52
185 186 4.644103 AGCTGAAACATATCATGGCAAC 57.356 40.909 0.00 0.00 33.60 4.17
186 187 4.275810 AGCTGAAACATATCATGGCAACT 58.724 39.130 0.00 0.00 37.61 3.16
187 188 4.708421 AGCTGAAACATATCATGGCAACTT 59.292 37.500 0.00 0.00 37.61 2.66
188 189 5.039333 GCTGAAACATATCATGGCAACTTC 58.961 41.667 0.00 0.00 37.61 3.01
189 190 5.393352 GCTGAAACATATCATGGCAACTTCA 60.393 40.000 0.00 0.00 37.61 3.02
190 191 6.198650 TGAAACATATCATGGCAACTTCAG 57.801 37.500 0.00 0.00 37.61 3.02
191 192 5.711506 TGAAACATATCATGGCAACTTCAGT 59.288 36.000 0.00 0.00 37.61 3.41
192 193 5.571784 AACATATCATGGCAACTTCAGTG 57.428 39.130 0.00 0.00 37.61 3.66
193 194 4.592942 ACATATCATGGCAACTTCAGTGT 58.407 39.130 0.00 0.00 37.61 3.55
194 195 5.744171 ACATATCATGGCAACTTCAGTGTA 58.256 37.500 0.00 0.00 37.61 2.90
195 196 6.179756 ACATATCATGGCAACTTCAGTGTAA 58.820 36.000 0.00 0.00 37.61 2.41
196 197 6.658816 ACATATCATGGCAACTTCAGTGTAAA 59.341 34.615 0.00 0.00 37.61 2.01
197 198 4.829064 TCATGGCAACTTCAGTGTAAAC 57.171 40.909 0.00 0.00 37.61 2.01
198 199 4.203226 TCATGGCAACTTCAGTGTAAACA 58.797 39.130 0.00 0.00 37.61 2.83
199 200 4.826733 TCATGGCAACTTCAGTGTAAACAT 59.173 37.500 0.00 0.00 37.61 2.71
200 201 4.829064 TGGCAACTTCAGTGTAAACATC 57.171 40.909 0.00 0.00 37.61 3.06
201 202 4.203226 TGGCAACTTCAGTGTAAACATCA 58.797 39.130 0.00 0.00 37.61 3.07
202 203 4.826733 TGGCAACTTCAGTGTAAACATCAT 59.173 37.500 0.00 0.00 37.61 2.45
203 204 5.156355 GGCAACTTCAGTGTAAACATCATG 58.844 41.667 0.00 0.00 0.00 3.07
204 205 5.156355 GCAACTTCAGTGTAAACATCATGG 58.844 41.667 0.00 0.00 0.00 3.66
205 206 5.156355 CAACTTCAGTGTAAACATCATGGC 58.844 41.667 0.00 0.00 0.00 4.40
206 207 4.397420 ACTTCAGTGTAAACATCATGGCA 58.603 39.130 0.00 0.00 0.00 4.92
207 208 4.826733 ACTTCAGTGTAAACATCATGGCAA 59.173 37.500 0.00 0.00 0.00 4.52
208 209 5.477984 ACTTCAGTGTAAACATCATGGCAAT 59.522 36.000 0.00 0.00 0.00 3.56
209 210 5.981088 TCAGTGTAAACATCATGGCAATT 57.019 34.783 0.00 0.00 0.00 2.32
210 211 5.953183 TCAGTGTAAACATCATGGCAATTC 58.047 37.500 0.00 0.00 0.00 2.17
211 212 5.476254 TCAGTGTAAACATCATGGCAATTCA 59.524 36.000 0.00 0.00 0.00 2.57
212 213 6.153170 TCAGTGTAAACATCATGGCAATTCAT 59.847 34.615 0.00 0.00 0.00 2.57
213 214 7.338957 TCAGTGTAAACATCATGGCAATTCATA 59.661 33.333 0.00 0.00 0.00 2.15
214 215 8.139350 CAGTGTAAACATCATGGCAATTCATAT 58.861 33.333 0.00 0.00 0.00 1.78
215 216 8.139350 AGTGTAAACATCATGGCAATTCATATG 58.861 33.333 0.00 0.00 0.00 1.78
216 217 6.924612 TGTAAACATCATGGCAATTCATATGC 59.075 34.615 0.00 0.00 43.08 3.14
217 218 5.538849 AACATCATGGCAATTCATATGCA 57.461 34.783 0.00 0.00 45.60 3.96
218 219 5.538849 ACATCATGGCAATTCATATGCAA 57.461 34.783 0.00 0.00 45.60 4.08
219 220 6.109156 ACATCATGGCAATTCATATGCAAT 57.891 33.333 0.00 0.00 45.60 3.56
220 221 7.234661 ACATCATGGCAATTCATATGCAATA 57.765 32.000 0.00 0.00 45.60 1.90
221 222 7.320399 ACATCATGGCAATTCATATGCAATAG 58.680 34.615 0.00 0.00 45.60 1.73
222 223 7.177744 ACATCATGGCAATTCATATGCAATAGA 59.822 33.333 0.00 0.00 45.60 1.98
223 224 6.916440 TCATGGCAATTCATATGCAATAGAC 58.084 36.000 0.00 0.00 45.60 2.59
224 225 6.490721 TCATGGCAATTCATATGCAATAGACA 59.509 34.615 0.00 0.00 45.60 3.41
225 226 6.904463 TGGCAATTCATATGCAATAGACAT 57.096 33.333 0.00 0.00 45.60 3.06
226 227 6.683715 TGGCAATTCATATGCAATAGACATG 58.316 36.000 0.00 0.00 45.60 3.21
227 228 6.097356 GGCAATTCATATGCAATAGACATGG 58.903 40.000 0.00 0.00 45.60 3.66
228 229 5.575606 GCAATTCATATGCAATAGACATGGC 59.424 40.000 0.00 0.00 43.29 4.40
229 230 6.683715 CAATTCATATGCAATAGACATGGCA 58.316 36.000 0.00 0.00 45.29 4.92
230 231 6.904463 ATTCATATGCAATAGACATGGCAA 57.096 33.333 0.00 0.00 44.38 4.52
231 232 6.712179 TTCATATGCAATAGACATGGCAAA 57.288 33.333 0.00 0.00 44.38 3.68
232 233 6.904463 TCATATGCAATAGACATGGCAAAT 57.096 33.333 0.00 0.00 44.38 2.32
233 234 7.292713 TCATATGCAATAGACATGGCAAATT 57.707 32.000 0.00 0.00 44.38 1.82
234 235 7.728148 TCATATGCAATAGACATGGCAAATTT 58.272 30.769 0.00 0.00 44.38 1.82
235 236 8.205512 TCATATGCAATAGACATGGCAAATTTT 58.794 29.630 0.00 0.00 44.38 1.82
236 237 9.478768 CATATGCAATAGACATGGCAAATTTTA 57.521 29.630 0.00 0.00 44.38 1.52
238 239 8.967664 ATGCAATAGACATGGCAAATTTTAAT 57.032 26.923 0.00 0.00 44.38 1.40
239 240 8.422973 TGCAATAGACATGGCAAATTTTAATC 57.577 30.769 0.00 0.00 38.19 1.75
240 241 7.495279 TGCAATAGACATGGCAAATTTTAATCC 59.505 33.333 0.00 0.00 38.19 3.01
241 242 7.495279 GCAATAGACATGGCAAATTTTAATCCA 59.505 33.333 0.00 0.00 30.66 3.41
242 243 9.381033 CAATAGACATGGCAAATTTTAATCCAA 57.619 29.630 0.00 0.00 0.00 3.53
245 246 8.866970 AGACATGGCAAATTTTAATCCAATTT 57.133 26.923 0.00 0.00 34.75 1.82
246 247 9.299465 AGACATGGCAAATTTTAATCCAATTTT 57.701 25.926 0.00 0.00 32.57 1.82
247 248 9.911138 GACATGGCAAATTTTAATCCAATTTTT 57.089 25.926 0.00 0.00 32.57 1.94
277 278 9.382275 TCATCAAAACATATTTCGAAGATCTCA 57.618 29.630 0.00 0.00 35.04 3.27
280 281 8.542953 TCAAAACATATTTCGAAGATCTCATCG 58.457 33.333 10.02 10.02 38.29 3.84
281 282 6.459257 AACATATTTCGAAGATCTCATCGC 57.541 37.500 11.22 0.00 37.05 4.58
282 283 4.618912 ACATATTTCGAAGATCTCATCGCG 59.381 41.667 11.22 0.00 37.05 5.87
283 284 2.844122 TTTCGAAGATCTCATCGCGA 57.156 45.000 13.09 13.09 37.05 5.87
284 285 2.391322 TTCGAAGATCTCATCGCGAG 57.609 50.000 16.66 7.11 43.80 5.03
285 286 0.588737 TCGAAGATCTCATCGCGAGG 59.411 55.000 15.81 15.81 42.55 4.63
286 287 0.386605 CGAAGATCTCATCGCGAGGG 60.387 60.000 21.76 12.63 42.55 4.30
287 288 0.955178 GAAGATCTCATCGCGAGGGA 59.045 55.000 21.76 16.72 42.55 4.20
288 289 1.543802 GAAGATCTCATCGCGAGGGAT 59.456 52.381 21.76 20.51 42.55 3.85
289 290 1.626686 AGATCTCATCGCGAGGGATT 58.373 50.000 21.76 5.43 42.55 3.01
290 291 1.967066 AGATCTCATCGCGAGGGATTT 59.033 47.619 21.76 13.93 42.55 2.17
291 292 3.157881 AGATCTCATCGCGAGGGATTTA 58.842 45.455 21.76 0.00 42.55 1.40
292 293 3.574396 AGATCTCATCGCGAGGGATTTAA 59.426 43.478 21.76 0.00 42.55 1.52
293 294 4.221703 AGATCTCATCGCGAGGGATTTAAT 59.778 41.667 21.76 8.75 42.55 1.40
294 295 3.653344 TCTCATCGCGAGGGATTTAATG 58.347 45.455 21.76 7.60 42.55 1.90
295 296 3.320826 TCTCATCGCGAGGGATTTAATGA 59.679 43.478 21.76 11.74 42.55 2.57
296 297 4.021104 TCTCATCGCGAGGGATTTAATGAT 60.021 41.667 21.76 0.00 42.55 2.45
297 298 3.996363 TCATCGCGAGGGATTTAATGATG 59.004 43.478 21.76 6.04 34.70 3.07
298 299 3.744238 TCGCGAGGGATTTAATGATGA 57.256 42.857 3.71 0.00 0.00 2.92
299 300 4.066646 TCGCGAGGGATTTAATGATGAA 57.933 40.909 3.71 0.00 0.00 2.57
300 301 4.447290 TCGCGAGGGATTTAATGATGAAA 58.553 39.130 3.71 0.00 0.00 2.69
301 302 4.878971 TCGCGAGGGATTTAATGATGAAAA 59.121 37.500 3.71 0.00 0.00 2.29
302 303 4.970003 CGCGAGGGATTTAATGATGAAAAC 59.030 41.667 0.00 0.00 0.00 2.43
303 304 4.970003 GCGAGGGATTTAATGATGAAAACG 59.030 41.667 0.00 0.00 0.00 3.60
304 305 5.510671 CGAGGGATTTAATGATGAAAACGG 58.489 41.667 0.00 0.00 0.00 4.44
305 306 5.295787 CGAGGGATTTAATGATGAAAACGGA 59.704 40.000 0.00 0.00 0.00 4.69
306 307 6.017109 CGAGGGATTTAATGATGAAAACGGAT 60.017 38.462 0.00 0.00 0.00 4.18
307 308 7.468631 CGAGGGATTTAATGATGAAAACGGATT 60.469 37.037 0.00 0.00 0.00 3.01
308 309 8.078060 AGGGATTTAATGATGAAAACGGATTT 57.922 30.769 0.00 0.00 0.00 2.17
309 310 8.539544 AGGGATTTAATGATGAAAACGGATTTT 58.460 29.630 0.00 0.00 40.83 1.82
322 323 7.722795 AAAACGGATTTTCAATCGGATTTTT 57.277 28.000 0.00 5.70 32.29 1.94
371 372 9.685276 AAAAACTGAAAATCCAAAAAGATTCCT 57.315 25.926 0.00 0.00 35.40 3.36
372 373 8.667076 AAACTGAAAATCCAAAAAGATTCCTG 57.333 30.769 0.00 0.00 35.40 3.86
373 374 6.226052 ACTGAAAATCCAAAAAGATTCCTGC 58.774 36.000 0.00 0.00 35.40 4.85
374 375 6.172136 TGAAAATCCAAAAAGATTCCTGCA 57.828 33.333 0.00 0.00 35.40 4.41
375 376 6.771573 TGAAAATCCAAAAAGATTCCTGCAT 58.228 32.000 0.00 0.00 35.40 3.96
376 377 6.651643 TGAAAATCCAAAAAGATTCCTGCATG 59.348 34.615 0.00 0.00 35.40 4.06
377 378 3.598019 TCCAAAAAGATTCCTGCATGC 57.402 42.857 11.82 11.82 0.00 4.06
378 379 2.898612 TCCAAAAAGATTCCTGCATGCA 59.101 40.909 21.29 21.29 0.00 3.96
379 380 3.516300 TCCAAAAAGATTCCTGCATGCAT 59.484 39.130 22.97 5.92 0.00 3.96
380 381 3.621268 CCAAAAAGATTCCTGCATGCATG 59.379 43.478 22.97 22.70 0.00 4.06
393 394 2.711311 GCATGCATGCGATGACGT 59.289 55.556 33.99 0.00 44.67 4.34
394 395 1.653232 GCATGCATGCGATGACGTG 60.653 57.895 33.99 3.92 44.67 4.49
395 396 1.010462 CATGCATGCGATGACGTGG 60.010 57.895 14.93 0.00 41.98 4.94
396 397 2.827051 ATGCATGCGATGACGTGGC 61.827 57.895 14.09 0.00 41.98 5.01
397 398 3.498834 GCATGCGATGACGTGGCA 61.499 61.111 0.00 6.82 45.88 4.92
398 399 3.037992 GCATGCGATGACGTGGCAA 62.038 57.895 8.50 0.00 44.94 4.52
399 400 1.723273 CATGCGATGACGTGGCAAT 59.277 52.632 8.50 0.00 44.94 3.56
400 401 0.316442 CATGCGATGACGTGGCAATC 60.316 55.000 8.50 0.00 44.94 2.67
401 402 0.462581 ATGCGATGACGTGGCAATCT 60.463 50.000 8.50 0.00 44.94 2.40
402 403 1.349627 GCGATGACGTGGCAATCTG 59.650 57.895 0.00 0.00 41.98 2.90
403 404 1.361668 GCGATGACGTGGCAATCTGT 61.362 55.000 0.00 0.00 41.98 3.41
404 405 1.078709 CGATGACGTGGCAATCTGTT 58.921 50.000 0.00 0.00 34.56 3.16
405 406 1.464608 CGATGACGTGGCAATCTGTTT 59.535 47.619 0.00 0.00 34.56 2.83
406 407 2.670905 CGATGACGTGGCAATCTGTTTA 59.329 45.455 0.00 0.00 34.56 2.01
407 408 3.483574 CGATGACGTGGCAATCTGTTTAC 60.484 47.826 0.00 0.00 34.56 2.01
408 409 2.839975 TGACGTGGCAATCTGTTTACA 58.160 42.857 0.00 0.00 0.00 2.41
409 410 3.407698 TGACGTGGCAATCTGTTTACAT 58.592 40.909 0.00 0.00 0.00 2.29
410 411 3.818210 TGACGTGGCAATCTGTTTACATT 59.182 39.130 0.00 0.00 0.00 2.71
411 412 4.998033 TGACGTGGCAATCTGTTTACATTA 59.002 37.500 0.00 0.00 0.00 1.90
412 413 5.470437 TGACGTGGCAATCTGTTTACATTAA 59.530 36.000 0.00 0.00 0.00 1.40
413 414 6.017026 TGACGTGGCAATCTGTTTACATTAAA 60.017 34.615 0.00 0.00 0.00 1.52
414 415 6.740110 ACGTGGCAATCTGTTTACATTAAAA 58.260 32.000 0.00 0.00 0.00 1.52
415 416 7.203910 ACGTGGCAATCTGTTTACATTAAAAA 58.796 30.769 0.00 0.00 0.00 1.94
416 417 7.168469 ACGTGGCAATCTGTTTACATTAAAAAC 59.832 33.333 0.00 0.00 37.35 2.43
417 418 7.498225 GTGGCAATCTGTTTACATTAAAAACG 58.502 34.615 0.00 0.00 39.23 3.60
418 419 7.168469 GTGGCAATCTGTTTACATTAAAAACGT 59.832 33.333 0.00 0.00 39.23 3.99
419 420 7.168302 TGGCAATCTGTTTACATTAAAAACGTG 59.832 33.333 0.00 0.00 39.23 4.49
420 421 7.168469 GGCAATCTGTTTACATTAAAAACGTGT 59.832 33.333 0.00 0.00 39.23 4.49
421 422 7.995998 GCAATCTGTTTACATTAAAAACGTGTG 59.004 33.333 0.00 0.00 39.23 3.82
422 423 8.476142 CAATCTGTTTACATTAAAAACGTGTGG 58.524 33.333 0.00 0.00 39.23 4.17
423 424 7.086230 TCTGTTTACATTAAAAACGTGTGGT 57.914 32.000 0.00 0.00 39.23 4.16
424 425 6.967767 TCTGTTTACATTAAAAACGTGTGGTG 59.032 34.615 0.00 0.00 39.23 4.17
425 426 5.515626 TGTTTACATTAAAAACGTGTGGTGC 59.484 36.000 0.00 0.00 39.23 5.01
426 427 2.722071 ACATTAAAAACGTGTGGTGCG 58.278 42.857 0.00 0.00 0.00 5.34
427 428 2.097791 ACATTAAAAACGTGTGGTGCGT 59.902 40.909 0.00 0.00 45.07 5.24
428 429 2.455295 TTAAAAACGTGTGGTGCGTC 57.545 45.000 0.00 0.00 42.10 5.19
429 430 1.654317 TAAAAACGTGTGGTGCGTCT 58.346 45.000 0.00 0.00 42.10 4.18
430 431 0.806241 AAAAACGTGTGGTGCGTCTT 59.194 45.000 0.00 0.00 42.10 3.01
431 432 0.375803 AAAACGTGTGGTGCGTCTTC 59.624 50.000 0.00 0.00 42.10 2.87
432 433 1.433837 AAACGTGTGGTGCGTCTTCC 61.434 55.000 0.00 0.00 42.10 3.46
433 434 2.029073 CGTGTGGTGCGTCTTCCT 59.971 61.111 0.00 0.00 0.00 3.36
434 435 1.594293 CGTGTGGTGCGTCTTCCTT 60.594 57.895 0.00 0.00 0.00 3.36
435 436 1.557443 CGTGTGGTGCGTCTTCCTTC 61.557 60.000 0.00 0.00 0.00 3.46
436 437 1.070786 TGTGGTGCGTCTTCCTTCC 59.929 57.895 0.00 0.00 0.00 3.46
437 438 1.371558 GTGGTGCGTCTTCCTTCCT 59.628 57.895 0.00 0.00 0.00 3.36
438 439 0.951040 GTGGTGCGTCTTCCTTCCTG 60.951 60.000 0.00 0.00 0.00 3.86
439 440 2.035442 GGTGCGTCTTCCTTCCTGC 61.035 63.158 0.00 0.00 0.00 4.85
440 441 2.035442 GTGCGTCTTCCTTCCTGCC 61.035 63.158 0.00 0.00 0.00 4.85
441 442 2.347490 GCGTCTTCCTTCCTGCCA 59.653 61.111 0.00 0.00 0.00 4.92
442 443 2.035442 GCGTCTTCCTTCCTGCCAC 61.035 63.158 0.00 0.00 0.00 5.01
443 444 1.371183 CGTCTTCCTTCCTGCCACA 59.629 57.895 0.00 0.00 0.00 4.17
444 445 0.951040 CGTCTTCCTTCCTGCCACAC 60.951 60.000 0.00 0.00 0.00 3.82
445 446 0.951040 GTCTTCCTTCCTGCCACACG 60.951 60.000 0.00 0.00 0.00 4.49
446 447 1.071471 CTTCCTTCCTGCCACACGT 59.929 57.895 0.00 0.00 0.00 4.49
447 448 1.227823 TTCCTTCCTGCCACACGTG 60.228 57.895 15.48 15.48 0.00 4.49
448 449 1.978455 TTCCTTCCTGCCACACGTGT 61.978 55.000 17.22 17.22 0.00 4.49
449 450 2.253758 CCTTCCTGCCACACGTGTG 61.254 63.158 36.13 36.13 45.23 3.82
458 459 1.569493 CACACGTGTGGCAGTTAGC 59.431 57.895 35.65 0.00 42.10 3.09
533 535 6.976934 TGGCACATAGACAGAGATACATAA 57.023 37.500 0.00 0.00 0.00 1.90
553 555 8.330466 ACATAATGAACGGATAAGTGTTGAAA 57.670 30.769 0.00 0.00 0.00 2.69
600 631 5.506832 GTGTTGTCAGTTGTTTCAGTAAACG 59.493 40.000 0.00 0.00 46.63 3.60
635 666 0.803380 GCATGCATCGGGAAACAAGC 60.803 55.000 14.21 0.00 0.00 4.01
645 676 1.202940 GGGAAACAAGCCAGGAGACTT 60.203 52.381 0.00 0.00 40.21 3.01
665 696 7.960793 AGACTTAGTTTACAATGCGAATGTAC 58.039 34.615 0.00 0.00 33.22 2.90
666 697 7.817962 AGACTTAGTTTACAATGCGAATGTACT 59.182 33.333 0.00 0.00 33.22 2.73
667 698 8.991243 ACTTAGTTTACAATGCGAATGTACTA 57.009 30.769 0.00 0.00 33.22 1.82
670 701 7.843490 AGTTTACAATGCGAATGTACTATGT 57.157 32.000 0.00 0.00 33.22 2.29
683 714 0.830648 ACTATGTGCTATGGCGGTGT 59.169 50.000 0.00 0.00 42.25 4.16
692 723 2.094757 TATGGCGGTGTAGGCGATGG 62.095 60.000 0.00 0.00 39.82 3.51
719 750 7.172703 CCCTTGTACTTAGTTACTTCCACAAAG 59.827 40.741 0.00 0.00 41.08 2.77
790 821 2.079158 CTGTCTGCACCATAACCACAG 58.921 52.381 0.00 0.00 0.00 3.66
820 859 5.065346 GTCGATCAACAGATCACTCTCTACA 59.935 44.000 6.32 0.00 38.44 2.74
870 909 2.294074 GTGCCCATACTATTTTCCGCA 58.706 47.619 0.00 0.00 0.00 5.69
871 910 2.884639 GTGCCCATACTATTTTCCGCAT 59.115 45.455 0.00 0.00 0.00 4.73
887 926 1.531423 GCATCCGTATCCCTCTCGTA 58.469 55.000 0.00 0.00 0.00 3.43
1122 1161 1.203441 TCAAGGCTGACAGGCAGGAT 61.203 55.000 28.64 10.69 44.19 3.24
1141 1180 3.197766 GGATGTCACCATAGAGTTCCACA 59.802 47.826 0.00 0.00 0.00 4.17
1263 1302 1.896660 TCCTGCTTCCGTTTGTGCC 60.897 57.895 0.00 0.00 0.00 5.01
1289 1350 1.468520 GTGTTGTGACTTGTGTGTGCT 59.531 47.619 0.00 0.00 0.00 4.40
1302 1363 4.017877 GTGCTCTTGCGCGTGCTT 62.018 61.111 23.16 0.00 43.34 3.91
1303 1364 4.016629 TGCTCTTGCGCGTGCTTG 62.017 61.111 23.16 14.35 43.34 4.01
1306 1367 3.245948 CTCTTGCGCGTGCTTGCTT 62.246 57.895 23.16 0.00 43.34 3.91
1307 1368 3.095278 CTTGCGCGTGCTTGCTTG 61.095 61.111 23.16 2.07 43.34 4.01
1308 1369 3.812166 CTTGCGCGTGCTTGCTTGT 62.812 57.895 23.16 0.00 43.34 3.16
1309 1370 4.610890 TGCGCGTGCTTGCTTGTG 62.611 61.111 23.16 0.00 43.34 3.33
1310 1371 4.612536 GCGCGTGCTTGCTTGTGT 62.613 61.111 15.02 0.00 38.39 3.72
1311 1372 2.723271 CGCGTGCTTGCTTGTGTG 60.723 61.111 0.00 0.00 0.00 3.82
1312 1373 2.408835 GCGTGCTTGCTTGTGTGT 59.591 55.556 0.00 0.00 0.00 3.72
1313 1374 1.655350 GCGTGCTTGCTTGTGTGTC 60.655 57.895 0.00 0.00 0.00 3.67
1314 1375 1.720894 CGTGCTTGCTTGTGTGTCA 59.279 52.632 0.00 0.00 0.00 3.58
1315 1376 0.316442 CGTGCTTGCTTGTGTGTCAG 60.316 55.000 0.00 0.00 0.00 3.51
1316 1377 0.029834 GTGCTTGCTTGTGTGTCAGG 59.970 55.000 0.00 0.00 0.00 3.86
1328 1391 1.097547 GTGTCAGGCTGCTTGTGTGT 61.098 55.000 10.34 0.00 0.00 3.72
1329 1392 1.096967 TGTCAGGCTGCTTGTGTGTG 61.097 55.000 10.34 0.00 0.00 3.82
1336 1399 0.378257 CTGCTTGTGTGTGGTGTGTC 59.622 55.000 0.00 0.00 0.00 3.67
1383 1446 1.590238 CGCTACTTGCACTCTACATGC 59.410 52.381 0.00 0.00 43.06 4.06
1388 1451 2.238144 ACTTGCACTCTACATGCTCCAT 59.762 45.455 0.00 0.00 43.77 3.41
1489 1552 8.367911 TGTCTACTGAGATGTTAAATCACAGTT 58.632 33.333 17.93 5.76 43.82 3.16
1494 1557 8.367911 ACTGAGATGTTAAATCACAGTTGACTA 58.632 33.333 9.21 0.00 43.82 2.59
1519 1582 1.720301 CAAGCGATCTTGGCTCTGC 59.280 57.895 0.00 0.00 44.53 4.26
1520 1583 1.022982 CAAGCGATCTTGGCTCTGCA 61.023 55.000 0.00 0.00 44.53 4.41
1521 1584 0.321919 AAGCGATCTTGGCTCTGCAA 60.322 50.000 0.00 0.00 40.53 4.08
1522 1585 0.107312 AGCGATCTTGGCTCTGCAAT 60.107 50.000 0.00 0.00 35.37 3.56
1523 1586 0.737219 GCGATCTTGGCTCTGCAATT 59.263 50.000 0.00 0.00 0.00 2.32
1524 1587 1.268437 GCGATCTTGGCTCTGCAATTC 60.268 52.381 0.00 0.00 0.00 2.17
1525 1588 1.004185 CGATCTTGGCTCTGCAATTCG 60.004 52.381 0.00 0.00 0.00 3.34
1526 1589 2.012673 GATCTTGGCTCTGCAATTCGT 58.987 47.619 0.00 0.00 0.00 3.85
1527 1590 1.159285 TCTTGGCTCTGCAATTCGTG 58.841 50.000 0.00 0.00 0.00 4.35
1528 1591 0.877071 CTTGGCTCTGCAATTCGTGT 59.123 50.000 0.00 0.00 0.00 4.49
1529 1592 1.267806 CTTGGCTCTGCAATTCGTGTT 59.732 47.619 0.00 0.00 0.00 3.32
1530 1593 0.874390 TGGCTCTGCAATTCGTGTTC 59.126 50.000 0.00 0.00 0.00 3.18
1531 1594 0.179215 GGCTCTGCAATTCGTGTTCG 60.179 55.000 0.00 0.00 38.55 3.95
1532 1595 0.790207 GCTCTGCAATTCGTGTTCGA 59.210 50.000 0.00 0.00 44.66 3.71
1533 1596 1.394917 GCTCTGCAATTCGTGTTCGAT 59.605 47.619 0.00 0.00 45.65 3.59
1534 1597 2.159653 GCTCTGCAATTCGTGTTCGATT 60.160 45.455 0.00 0.00 45.65 3.34
1535 1598 3.410850 CTCTGCAATTCGTGTTCGATTG 58.589 45.455 0.00 0.00 45.65 2.67
1536 1599 2.805671 TCTGCAATTCGTGTTCGATTGT 59.194 40.909 0.00 0.00 45.65 2.71
1537 1600 3.120683 TCTGCAATTCGTGTTCGATTGTC 60.121 43.478 0.00 0.00 45.65 3.18
1538 1601 2.545946 TGCAATTCGTGTTCGATTGTCA 59.454 40.909 0.00 0.00 45.65 3.58
1539 1602 3.188254 TGCAATTCGTGTTCGATTGTCAT 59.812 39.130 0.00 0.00 45.65 3.06
1540 1603 3.780801 GCAATTCGTGTTCGATTGTCATC 59.219 43.478 0.00 0.00 45.65 2.92
1541 1604 4.436050 GCAATTCGTGTTCGATTGTCATCT 60.436 41.667 0.00 0.00 45.65 2.90
1542 1605 5.621422 CAATTCGTGTTCGATTGTCATCTT 58.379 37.500 0.00 0.00 45.65 2.40
1543 1606 5.862924 ATTCGTGTTCGATTGTCATCTTT 57.137 34.783 0.00 0.00 45.65 2.52
1544 1607 5.666969 TTCGTGTTCGATTGTCATCTTTT 57.333 34.783 0.00 0.00 45.65 2.27
1545 1608 5.666969 TCGTGTTCGATTGTCATCTTTTT 57.333 34.783 0.00 0.00 41.35 1.94
1546 1609 5.439828 TCGTGTTCGATTGTCATCTTTTTG 58.560 37.500 0.00 0.00 41.35 2.44
1547 1610 5.007234 TCGTGTTCGATTGTCATCTTTTTGT 59.993 36.000 0.00 0.00 41.35 2.83
1548 1611 5.681105 CGTGTTCGATTGTCATCTTTTTGTT 59.319 36.000 0.00 0.00 39.71 2.83
1549 1612 6.196353 CGTGTTCGATTGTCATCTTTTTGTTT 59.804 34.615 0.00 0.00 39.71 2.83
1550 1613 7.547119 GTGTTCGATTGTCATCTTTTTGTTTC 58.453 34.615 0.00 0.00 0.00 2.78
1551 1614 7.219917 GTGTTCGATTGTCATCTTTTTGTTTCA 59.780 33.333 0.00 0.00 0.00 2.69
1552 1615 7.920151 TGTTCGATTGTCATCTTTTTGTTTCAT 59.080 29.630 0.00 0.00 0.00 2.57
1553 1616 8.420189 GTTCGATTGTCATCTTTTTGTTTCATC 58.580 33.333 0.00 0.00 0.00 2.92
1554 1617 7.874940 TCGATTGTCATCTTTTTGTTTCATCT 58.125 30.769 0.00 0.00 0.00 2.90
1555 1618 7.804600 TCGATTGTCATCTTTTTGTTTCATCTG 59.195 33.333 0.00 0.00 0.00 2.90
1556 1619 7.061441 CGATTGTCATCTTTTTGTTTCATCTGG 59.939 37.037 0.00 0.00 0.00 3.86
1557 1620 6.088016 TGTCATCTTTTTGTTTCATCTGGG 57.912 37.500 0.00 0.00 0.00 4.45
1558 1621 4.925646 GTCATCTTTTTGTTTCATCTGGGC 59.074 41.667 0.00 0.00 0.00 5.36
1559 1622 4.588106 TCATCTTTTTGTTTCATCTGGGCA 59.412 37.500 0.00 0.00 0.00 5.36
1560 1623 5.246656 TCATCTTTTTGTTTCATCTGGGCAT 59.753 36.000 0.00 0.00 0.00 4.40
1561 1624 4.885413 TCTTTTTGTTTCATCTGGGCATG 58.115 39.130 0.00 0.00 0.00 4.06
1562 1625 3.681593 TTTTGTTTCATCTGGGCATGG 57.318 42.857 0.00 0.00 0.00 3.66
1563 1626 2.307496 TTGTTTCATCTGGGCATGGT 57.693 45.000 0.00 0.00 0.00 3.55
1564 1627 1.548081 TGTTTCATCTGGGCATGGTG 58.452 50.000 0.00 0.00 0.00 4.17
1565 1628 0.174162 GTTTCATCTGGGCATGGTGC 59.826 55.000 0.00 0.00 44.08 5.01
1580 1643 4.965062 CATGGTGCATGCAAAGATTTTTC 58.035 39.130 24.58 6.26 35.02 2.29
1581 1644 4.339872 TGGTGCATGCAAAGATTTTTCT 57.660 36.364 24.58 0.00 0.00 2.52
1582 1645 4.706035 TGGTGCATGCAAAGATTTTTCTT 58.294 34.783 24.58 0.00 0.00 2.52
1583 1646 5.124645 TGGTGCATGCAAAGATTTTTCTTT 58.875 33.333 24.58 0.00 40.22 2.52
1584 1647 6.286758 TGGTGCATGCAAAGATTTTTCTTTA 58.713 32.000 24.58 0.00 37.80 1.85
1585 1648 6.424509 TGGTGCATGCAAAGATTTTTCTTTAG 59.575 34.615 24.58 0.00 37.80 1.85
1586 1649 6.128472 GGTGCATGCAAAGATTTTTCTTTAGG 60.128 38.462 24.58 0.00 37.80 2.69
1587 1650 6.646240 GTGCATGCAAAGATTTTTCTTTAGGA 59.354 34.615 24.58 0.00 37.80 2.94
1588 1651 6.869913 TGCATGCAAAGATTTTTCTTTAGGAG 59.130 34.615 20.30 0.00 37.80 3.69
1589 1652 6.312180 GCATGCAAAGATTTTTCTTTAGGAGG 59.688 38.462 14.21 1.85 37.80 4.30
1590 1653 6.345096 TGCAAAGATTTTTCTTTAGGAGGG 57.655 37.500 0.97 0.00 37.80 4.30
1591 1654 5.838521 TGCAAAGATTTTTCTTTAGGAGGGT 59.161 36.000 0.97 0.00 37.80 4.34
1592 1655 6.159293 GCAAAGATTTTTCTTTAGGAGGGTG 58.841 40.000 0.97 0.00 37.80 4.61
1593 1656 6.691508 CAAAGATTTTTCTTTAGGAGGGTGG 58.308 40.000 0.97 0.00 37.80 4.61
1594 1657 4.935578 AGATTTTTCTTTAGGAGGGTGGG 58.064 43.478 0.00 0.00 0.00 4.61
1595 1658 4.606255 AGATTTTTCTTTAGGAGGGTGGGA 59.394 41.667 0.00 0.00 0.00 4.37
1596 1659 5.256389 AGATTTTTCTTTAGGAGGGTGGGAT 59.744 40.000 0.00 0.00 0.00 3.85
1597 1660 4.316025 TTTTCTTTAGGAGGGTGGGATG 57.684 45.455 0.00 0.00 0.00 3.51
1598 1661 1.893315 TCTTTAGGAGGGTGGGATGG 58.107 55.000 0.00 0.00 0.00 3.51
1599 1662 0.846693 CTTTAGGAGGGTGGGATGGG 59.153 60.000 0.00 0.00 0.00 4.00
1600 1663 0.626277 TTTAGGAGGGTGGGATGGGG 60.626 60.000 0.00 0.00 0.00 4.96
1601 1664 2.577421 TTAGGAGGGTGGGATGGGGG 62.577 65.000 0.00 0.00 0.00 5.40
1602 1665 4.448340 GGAGGGTGGGATGGGGGA 62.448 72.222 0.00 0.00 0.00 4.81
1603 1666 2.774351 GAGGGTGGGATGGGGGAG 60.774 72.222 0.00 0.00 0.00 4.30
1604 1667 4.455137 AGGGTGGGATGGGGGAGG 62.455 72.222 0.00 0.00 0.00 4.30
1605 1668 4.448340 GGGTGGGATGGGGGAGGA 62.448 72.222 0.00 0.00 0.00 3.71
1606 1669 2.774351 GGTGGGATGGGGGAGGAG 60.774 72.222 0.00 0.00 0.00 3.69
1607 1670 2.774351 GTGGGATGGGGGAGGAGG 60.774 72.222 0.00 0.00 0.00 4.30
1608 1671 4.122670 TGGGATGGGGGAGGAGGG 62.123 72.222 0.00 0.00 0.00 4.30
1609 1672 4.928520 GGGATGGGGGAGGAGGGG 62.929 77.778 0.00 0.00 0.00 4.79
1610 1673 4.124126 GGATGGGGGAGGAGGGGT 62.124 72.222 0.00 0.00 0.00 4.95
1611 1674 2.044620 GATGGGGGAGGAGGGGTT 59.955 66.667 0.00 0.00 0.00 4.11
1612 1675 2.044620 ATGGGGGAGGAGGGGTTC 59.955 66.667 0.00 0.00 0.00 3.62
1613 1676 2.857998 GATGGGGGAGGAGGGGTTCA 62.858 65.000 0.00 0.00 0.00 3.18
1614 1677 3.015753 GGGGGAGGAGGGGTTCAC 61.016 72.222 0.00 0.00 0.00 3.18
1615 1678 3.400054 GGGGAGGAGGGGTTCACG 61.400 72.222 0.00 0.00 0.00 4.35
1616 1679 4.097361 GGGAGGAGGGGTTCACGC 62.097 72.222 0.00 0.00 0.00 5.34
1617 1680 3.319198 GGAGGAGGGGTTCACGCA 61.319 66.667 0.00 0.00 33.80 5.24
1618 1681 2.747686 GAGGAGGGGTTCACGCAA 59.252 61.111 0.00 0.00 33.80 4.85
1619 1682 1.072505 GAGGAGGGGTTCACGCAAA 59.927 57.895 0.00 0.00 33.80 3.68
1620 1683 0.955919 GAGGAGGGGTTCACGCAAAG 60.956 60.000 0.00 0.00 33.80 2.77
1621 1684 1.072505 GGAGGGGTTCACGCAAAGA 59.927 57.895 0.00 0.00 33.80 2.52
1622 1685 0.322546 GGAGGGGTTCACGCAAAGAT 60.323 55.000 0.00 0.00 33.80 2.40
1623 1686 0.804989 GAGGGGTTCACGCAAAGATG 59.195 55.000 0.00 0.00 33.80 2.90
1624 1687 0.609131 AGGGGTTCACGCAAAGATGG 60.609 55.000 0.00 0.00 33.80 3.51
1625 1688 1.595093 GGGGTTCACGCAAAGATGGG 61.595 60.000 0.00 0.00 44.57 4.00
1626 1689 0.608035 GGGTTCACGCAAAGATGGGA 60.608 55.000 0.00 0.00 41.79 4.37
1627 1690 0.521735 GGTTCACGCAAAGATGGGAC 59.478 55.000 0.00 0.00 41.79 4.46
1641 1704 1.621992 TGGGACAGTCTCAGTCTCAC 58.378 55.000 0.00 0.00 41.33 3.51
1642 1705 1.133482 TGGGACAGTCTCAGTCTCACA 60.133 52.381 0.00 0.00 41.33 3.58
1643 1706 1.271102 GGGACAGTCTCAGTCTCACAC 59.729 57.143 0.00 0.00 36.49 3.82
1644 1707 1.271102 GGACAGTCTCAGTCTCACACC 59.729 57.143 0.00 0.00 36.29 4.16
1645 1708 1.957177 GACAGTCTCAGTCTCACACCA 59.043 52.381 0.00 0.00 33.29 4.17
1646 1709 2.362397 GACAGTCTCAGTCTCACACCAA 59.638 50.000 0.00 0.00 33.29 3.67
1647 1710 2.363680 ACAGTCTCAGTCTCACACCAAG 59.636 50.000 0.00 0.00 0.00 3.61
1648 1711 1.342819 AGTCTCAGTCTCACACCAAGC 59.657 52.381 0.00 0.00 0.00 4.01
1649 1712 0.315251 TCTCAGTCTCACACCAAGCG 59.685 55.000 0.00 0.00 0.00 4.68
1650 1713 0.315251 CTCAGTCTCACACCAAGCGA 59.685 55.000 0.00 0.00 0.00 4.93
1651 1714 0.315251 TCAGTCTCACACCAAGCGAG 59.685 55.000 0.00 0.00 0.00 5.03
1652 1715 0.315251 CAGTCTCACACCAAGCGAGA 59.685 55.000 0.00 0.00 33.46 4.04
1653 1716 1.067283 CAGTCTCACACCAAGCGAGAT 60.067 52.381 0.00 0.00 38.05 2.75
1660 1723 2.002586 ACACCAAGCGAGATCGAAATG 58.997 47.619 6.39 1.31 43.02 2.32
1670 1733 6.561614 AGCGAGATCGAAATGACTAGTTAAA 58.438 36.000 6.39 0.00 43.02 1.52
1711 1775 2.127708 ACTCCAACTTCCTCAGGTTGT 58.872 47.619 0.00 0.00 40.56 3.32
1821 1885 7.649533 ATCTCTTGAATTGTGCATCCAAATA 57.350 32.000 0.00 0.00 0.00 1.40
1857 1921 0.734942 GTTGGATTCCTCGCGTCGAA 60.735 55.000 5.77 9.60 34.74 3.71
1863 1927 2.074547 TTCCTCGCGTCGAAATCTTT 57.925 45.000 5.77 0.00 34.74 2.52
1875 1939 7.462331 CGCGTCGAAATCTTTAAAACTAGATCA 60.462 37.037 0.00 0.00 30.95 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.486548 GGTCAAAGTACTGGAGTTGCCA 60.487 50.000 0.00 0.00 46.96 4.92
1 2 2.152016 GGTCAAAGTACTGGAGTTGCC 58.848 52.381 0.00 0.00 37.10 4.52
2 3 2.846193 TGGTCAAAGTACTGGAGTTGC 58.154 47.619 0.00 0.00 0.00 4.17
3 4 4.641396 TCATGGTCAAAGTACTGGAGTTG 58.359 43.478 0.00 0.00 0.00 3.16
4 5 4.974645 TCATGGTCAAAGTACTGGAGTT 57.025 40.909 0.00 0.00 0.00 3.01
5 6 4.974645 TTCATGGTCAAAGTACTGGAGT 57.025 40.909 0.00 0.00 0.00 3.85
6 7 6.824305 ATTTTCATGGTCAAAGTACTGGAG 57.176 37.500 0.00 0.00 0.00 3.86
7 8 8.877864 ATAATTTTCATGGTCAAAGTACTGGA 57.122 30.769 0.00 0.00 0.00 3.86
8 9 9.927668 AAATAATTTTCATGGTCAAAGTACTGG 57.072 29.630 0.00 0.00 0.00 4.00
33 34 7.814264 AAAATTGCCATGGTTCATACAAAAA 57.186 28.000 14.67 0.00 0.00 1.94
34 35 7.116948 CGTAAAATTGCCATGGTTCATACAAAA 59.883 33.333 14.67 0.00 0.00 2.44
35 36 6.587990 CGTAAAATTGCCATGGTTCATACAAA 59.412 34.615 14.67 0.00 0.00 2.83
36 37 6.096036 CGTAAAATTGCCATGGTTCATACAA 58.904 36.000 14.67 8.14 0.00 2.41
37 38 5.184096 ACGTAAAATTGCCATGGTTCATACA 59.816 36.000 14.67 0.00 0.00 2.29
38 39 5.514914 CACGTAAAATTGCCATGGTTCATAC 59.485 40.000 14.67 8.69 0.00 2.39
39 40 5.645624 CACGTAAAATTGCCATGGTTCATA 58.354 37.500 14.67 0.00 0.00 2.15
40 41 4.493547 CACGTAAAATTGCCATGGTTCAT 58.506 39.130 14.67 0.00 0.00 2.57
41 42 3.858877 GCACGTAAAATTGCCATGGTTCA 60.859 43.478 14.67 0.00 32.21 3.18
42 43 2.666022 GCACGTAAAATTGCCATGGTTC 59.334 45.455 14.67 0.00 32.21 3.62
43 44 2.036475 TGCACGTAAAATTGCCATGGTT 59.964 40.909 14.67 1.29 38.00 3.67
44 45 1.615883 TGCACGTAAAATTGCCATGGT 59.384 42.857 14.67 0.00 38.00 3.55
45 46 2.360553 TGCACGTAAAATTGCCATGG 57.639 45.000 7.63 7.63 38.00 3.66
46 47 3.252400 ACATGCACGTAAAATTGCCATG 58.748 40.909 0.00 0.00 38.00 3.66
47 48 3.591196 ACATGCACGTAAAATTGCCAT 57.409 38.095 0.00 0.00 38.00 4.40
48 49 4.156739 TGATACATGCACGTAAAATTGCCA 59.843 37.500 0.00 0.00 38.00 4.92
49 50 4.667262 TGATACATGCACGTAAAATTGCC 58.333 39.130 0.00 0.00 38.00 4.52
50 51 5.173673 CCATGATACATGCACGTAAAATTGC 59.826 40.000 0.00 0.00 39.33 3.56
51 52 5.173673 GCCATGATACATGCACGTAAAATTG 59.826 40.000 0.00 0.00 0.00 2.32
52 53 5.163571 TGCCATGATACATGCACGTAAAATT 60.164 36.000 0.00 0.00 0.00 1.82
53 54 4.337836 TGCCATGATACATGCACGTAAAAT 59.662 37.500 0.00 0.00 0.00 1.82
54 55 3.691609 TGCCATGATACATGCACGTAAAA 59.308 39.130 0.00 0.00 0.00 1.52
55 56 3.274288 TGCCATGATACATGCACGTAAA 58.726 40.909 0.00 0.00 0.00 2.01
56 57 2.911484 TGCCATGATACATGCACGTAA 58.089 42.857 0.00 0.00 0.00 3.18
57 58 2.611225 TGCCATGATACATGCACGTA 57.389 45.000 0.00 0.00 0.00 3.57
58 59 1.748950 TTGCCATGATACATGCACGT 58.251 45.000 0.00 0.00 32.63 4.49
59 60 3.358707 AATTGCCATGATACATGCACG 57.641 42.857 0.00 0.00 32.63 5.34
60 61 6.275335 ACTAAAATTGCCATGATACATGCAC 58.725 36.000 0.00 2.20 32.63 4.57
61 62 6.468333 ACTAAAATTGCCATGATACATGCA 57.532 33.333 0.00 0.00 0.00 3.96
62 63 7.775397 AAACTAAAATTGCCATGATACATGC 57.225 32.000 0.00 3.56 0.00 4.06
64 65 9.985730 CCATAAACTAAAATTGCCATGATACAT 57.014 29.630 0.00 0.00 0.00 2.29
65 66 8.976353 ACCATAAACTAAAATTGCCATGATACA 58.024 29.630 0.00 0.00 0.00 2.29
66 67 9.816354 AACCATAAACTAAAATTGCCATGATAC 57.184 29.630 0.00 0.00 0.00 2.24
68 69 8.538701 TGAACCATAAACTAAAATTGCCATGAT 58.461 29.630 0.00 0.00 0.00 2.45
69 70 7.901029 TGAACCATAAACTAAAATTGCCATGA 58.099 30.769 0.00 0.00 0.00 3.07
70 71 8.605746 CATGAACCATAAACTAAAATTGCCATG 58.394 33.333 0.00 0.00 0.00 3.66
71 72 7.769970 CCATGAACCATAAACTAAAATTGCCAT 59.230 33.333 0.00 0.00 0.00 4.40
72 73 7.102346 CCATGAACCATAAACTAAAATTGCCA 58.898 34.615 0.00 0.00 0.00 4.92
73 74 6.037062 GCCATGAACCATAAACTAAAATTGCC 59.963 38.462 0.00 0.00 0.00 4.52
74 75 6.593382 TGCCATGAACCATAAACTAAAATTGC 59.407 34.615 0.00 0.00 0.00 3.56
75 76 8.545229 TTGCCATGAACCATAAACTAAAATTG 57.455 30.769 0.00 0.00 0.00 2.32
76 77 8.374743 ACTTGCCATGAACCATAAACTAAAATT 58.625 29.630 0.00 0.00 0.00 1.82
77 78 7.906327 ACTTGCCATGAACCATAAACTAAAAT 58.094 30.769 0.00 0.00 0.00 1.82
78 79 7.232534 AGACTTGCCATGAACCATAAACTAAAA 59.767 33.333 0.00 0.00 0.00 1.52
79 80 6.719370 AGACTTGCCATGAACCATAAACTAAA 59.281 34.615 0.00 0.00 0.00 1.85
80 81 6.245408 AGACTTGCCATGAACCATAAACTAA 58.755 36.000 0.00 0.00 0.00 2.24
81 82 5.815581 AGACTTGCCATGAACCATAAACTA 58.184 37.500 0.00 0.00 0.00 2.24
82 83 4.666512 AGACTTGCCATGAACCATAAACT 58.333 39.130 0.00 0.00 0.00 2.66
83 84 5.648092 ACTAGACTTGCCATGAACCATAAAC 59.352 40.000 0.00 0.00 0.00 2.01
84 85 5.815581 ACTAGACTTGCCATGAACCATAAA 58.184 37.500 0.00 0.00 0.00 1.40
85 86 5.435686 ACTAGACTTGCCATGAACCATAA 57.564 39.130 0.00 0.00 0.00 1.90
86 87 5.435686 AACTAGACTTGCCATGAACCATA 57.564 39.130 0.00 0.00 0.00 2.74
87 88 4.307032 AACTAGACTTGCCATGAACCAT 57.693 40.909 0.00 0.00 0.00 3.55
88 89 3.788227 AACTAGACTTGCCATGAACCA 57.212 42.857 0.00 0.00 0.00 3.67
89 90 4.327680 AGAAACTAGACTTGCCATGAACC 58.672 43.478 0.00 0.00 0.00 3.62
90 91 5.948992 AAGAAACTAGACTTGCCATGAAC 57.051 39.130 0.00 0.00 0.00 3.18
91 92 8.635765 AATTAAGAAACTAGACTTGCCATGAA 57.364 30.769 0.00 0.00 0.00 2.57
92 93 7.336931 GGAATTAAGAAACTAGACTTGCCATGA 59.663 37.037 0.00 0.00 0.00 3.07
93 94 7.415653 GGGAATTAAGAAACTAGACTTGCCATG 60.416 40.741 0.00 0.00 0.00 3.66
94 95 6.603599 GGGAATTAAGAAACTAGACTTGCCAT 59.396 38.462 0.00 0.00 0.00 4.40
95 96 5.944007 GGGAATTAAGAAACTAGACTTGCCA 59.056 40.000 0.00 0.00 0.00 4.92
96 97 5.357314 GGGGAATTAAGAAACTAGACTTGCC 59.643 44.000 0.00 0.00 0.00 4.52
97 98 5.064834 CGGGGAATTAAGAAACTAGACTTGC 59.935 44.000 0.00 0.00 0.00 4.01
98 99 6.171213 ACGGGGAATTAAGAAACTAGACTTG 58.829 40.000 0.00 0.00 0.00 3.16
99 100 6.370186 ACGGGGAATTAAGAAACTAGACTT 57.630 37.500 0.00 1.96 0.00 3.01
100 101 6.370186 AACGGGGAATTAAGAAACTAGACT 57.630 37.500 0.00 0.00 0.00 3.24
101 102 7.444629 AAAACGGGGAATTAAGAAACTAGAC 57.555 36.000 0.00 0.00 0.00 2.59
106 107 9.064804 CGTTTATAAAACGGGGAATTAAGAAAC 57.935 33.333 15.24 0.00 39.73 2.78
107 108 8.791675 ACGTTTATAAAACGGGGAATTAAGAAA 58.208 29.630 23.81 0.00 46.86 2.52
108 109 8.334263 ACGTTTATAAAACGGGGAATTAAGAA 57.666 30.769 23.81 0.00 46.86 2.52
109 110 7.605691 TGACGTTTATAAAACGGGGAATTAAGA 59.394 33.333 23.81 0.00 46.86 2.10
110 111 7.750769 TGACGTTTATAAAACGGGGAATTAAG 58.249 34.615 23.81 0.00 46.86 1.85
111 112 7.678947 TGACGTTTATAAAACGGGGAATTAA 57.321 32.000 23.81 0.00 46.86 1.40
112 113 7.678947 TTGACGTTTATAAAACGGGGAATTA 57.321 32.000 23.81 2.43 46.86 1.40
113 114 6.572167 TTGACGTTTATAAAACGGGGAATT 57.428 33.333 23.81 6.54 46.86 2.17
114 115 6.572167 TTTGACGTTTATAAAACGGGGAAT 57.428 33.333 23.81 7.16 46.86 3.01
115 116 6.382869 TTTTGACGTTTATAAAACGGGGAA 57.617 33.333 23.81 14.07 46.86 3.97
116 117 6.572167 ATTTTGACGTTTATAAAACGGGGA 57.428 33.333 23.81 9.91 46.86 4.81
117 118 7.640616 AAATTTTGACGTTTATAAAACGGGG 57.359 32.000 23.81 2.96 46.86 5.73
118 119 9.396938 AGTAAATTTTGACGTTTATAAAACGGG 57.603 29.630 23.81 3.57 46.86 5.28
155 156 9.674824 CCATGATATGTTTCAGCTATTTTCTTC 57.325 33.333 0.00 0.00 0.00 2.87
156 157 8.139989 GCCATGATATGTTTCAGCTATTTTCTT 58.860 33.333 0.00 0.00 0.00 2.52
157 158 7.286087 TGCCATGATATGTTTCAGCTATTTTCT 59.714 33.333 0.00 0.00 0.00 2.52
158 159 7.428020 TGCCATGATATGTTTCAGCTATTTTC 58.572 34.615 0.00 0.00 0.00 2.29
159 160 7.350744 TGCCATGATATGTTTCAGCTATTTT 57.649 32.000 0.00 0.00 0.00 1.82
160 161 6.964807 TGCCATGATATGTTTCAGCTATTT 57.035 33.333 0.00 0.00 0.00 1.40
161 162 6.548622 AGTTGCCATGATATGTTTCAGCTATT 59.451 34.615 0.00 0.00 0.00 1.73
162 163 6.066690 AGTTGCCATGATATGTTTCAGCTAT 58.933 36.000 0.00 0.00 0.00 2.97
163 164 5.439721 AGTTGCCATGATATGTTTCAGCTA 58.560 37.500 0.00 0.00 0.00 3.32
164 165 4.275810 AGTTGCCATGATATGTTTCAGCT 58.724 39.130 0.00 0.00 0.00 4.24
165 166 4.644103 AGTTGCCATGATATGTTTCAGC 57.356 40.909 0.00 0.00 0.00 4.26
166 167 6.127814 ACTGAAGTTGCCATGATATGTTTCAG 60.128 38.462 16.88 16.88 42.68 3.02
167 168 5.711506 ACTGAAGTTGCCATGATATGTTTCA 59.288 36.000 0.00 0.00 0.00 2.69
168 169 6.032094 CACTGAAGTTGCCATGATATGTTTC 58.968 40.000 0.00 0.00 0.00 2.78
169 170 5.477984 ACACTGAAGTTGCCATGATATGTTT 59.522 36.000 0.00 0.00 0.00 2.83
170 171 5.012239 ACACTGAAGTTGCCATGATATGTT 58.988 37.500 0.00 0.00 0.00 2.71
171 172 4.592942 ACACTGAAGTTGCCATGATATGT 58.407 39.130 0.00 0.00 0.00 2.29
172 173 6.682423 TTACACTGAAGTTGCCATGATATG 57.318 37.500 0.00 0.00 0.00 1.78
173 174 6.658816 TGTTTACACTGAAGTTGCCATGATAT 59.341 34.615 0.00 0.00 0.00 1.63
174 175 6.000840 TGTTTACACTGAAGTTGCCATGATA 58.999 36.000 0.00 0.00 0.00 2.15
175 176 4.826733 TGTTTACACTGAAGTTGCCATGAT 59.173 37.500 0.00 0.00 0.00 2.45
176 177 4.203226 TGTTTACACTGAAGTTGCCATGA 58.797 39.130 0.00 0.00 0.00 3.07
177 178 4.566545 TGTTTACACTGAAGTTGCCATG 57.433 40.909 0.00 0.00 0.00 3.66
178 179 4.826733 TGATGTTTACACTGAAGTTGCCAT 59.173 37.500 0.00 0.00 0.00 4.40
179 180 4.203226 TGATGTTTACACTGAAGTTGCCA 58.797 39.130 0.00 0.00 0.00 4.92
180 181 4.829064 TGATGTTTACACTGAAGTTGCC 57.171 40.909 0.00 0.00 0.00 4.52
181 182 5.156355 CCATGATGTTTACACTGAAGTTGC 58.844 41.667 0.00 0.00 0.00 4.17
182 183 5.156355 GCCATGATGTTTACACTGAAGTTG 58.844 41.667 0.00 0.00 0.00 3.16
183 184 4.826733 TGCCATGATGTTTACACTGAAGTT 59.173 37.500 0.00 0.00 0.00 2.66
184 185 4.397420 TGCCATGATGTTTACACTGAAGT 58.603 39.130 0.00 0.00 0.00 3.01
185 186 5.375417 TTGCCATGATGTTTACACTGAAG 57.625 39.130 0.00 0.00 0.00 3.02
186 187 5.981088 ATTGCCATGATGTTTACACTGAA 57.019 34.783 0.00 0.00 0.00 3.02
187 188 5.476254 TGAATTGCCATGATGTTTACACTGA 59.524 36.000 0.00 0.00 0.00 3.41
188 189 5.712004 TGAATTGCCATGATGTTTACACTG 58.288 37.500 0.00 0.00 0.00 3.66
189 190 5.981088 TGAATTGCCATGATGTTTACACT 57.019 34.783 0.00 0.00 0.00 3.55
190 191 7.095940 GCATATGAATTGCCATGATGTTTACAC 60.096 37.037 6.97 0.00 33.95 2.90
191 192 6.924612 GCATATGAATTGCCATGATGTTTACA 59.075 34.615 6.97 0.00 33.95 2.41
192 193 6.924612 TGCATATGAATTGCCATGATGTTTAC 59.075 34.615 6.97 0.00 39.39 2.01
193 194 7.052142 TGCATATGAATTGCCATGATGTTTA 57.948 32.000 6.97 0.00 39.39 2.01
194 195 5.919755 TGCATATGAATTGCCATGATGTTT 58.080 33.333 6.97 0.00 39.39 2.83
195 196 5.538849 TGCATATGAATTGCCATGATGTT 57.461 34.783 6.97 0.00 39.39 2.71
196 197 5.538849 TTGCATATGAATTGCCATGATGT 57.461 34.783 6.97 0.00 39.39 3.06
197 198 7.488150 GTCTATTGCATATGAATTGCCATGATG 59.512 37.037 6.97 0.00 39.39 3.07
198 199 7.177744 TGTCTATTGCATATGAATTGCCATGAT 59.822 33.333 6.97 0.00 39.39 2.45
199 200 6.490721 TGTCTATTGCATATGAATTGCCATGA 59.509 34.615 6.97 0.00 39.39 3.07
200 201 6.683715 TGTCTATTGCATATGAATTGCCATG 58.316 36.000 6.97 0.00 39.39 3.66
201 202 6.904463 TGTCTATTGCATATGAATTGCCAT 57.096 33.333 6.97 0.00 39.39 4.40
202 203 6.294843 CCATGTCTATTGCATATGAATTGCCA 60.295 38.462 6.97 1.96 39.39 4.92
203 204 6.097356 CCATGTCTATTGCATATGAATTGCC 58.903 40.000 6.97 0.00 39.39 4.52
204 205 5.575606 GCCATGTCTATTGCATATGAATTGC 59.424 40.000 6.97 0.00 40.55 3.56
205 206 6.683715 TGCCATGTCTATTGCATATGAATTG 58.316 36.000 6.97 5.20 30.76 2.32
206 207 6.904463 TGCCATGTCTATTGCATATGAATT 57.096 33.333 6.97 0.00 30.76 2.17
207 208 6.904463 TTGCCATGTCTATTGCATATGAAT 57.096 33.333 6.97 6.30 35.21 2.57
208 209 6.712179 TTTGCCATGTCTATTGCATATGAA 57.288 33.333 6.97 0.00 35.21 2.57
209 210 6.904463 ATTTGCCATGTCTATTGCATATGA 57.096 33.333 6.97 0.00 35.21 2.15
210 211 7.956420 AAATTTGCCATGTCTATTGCATATG 57.044 32.000 0.00 0.00 35.21 1.78
213 214 8.967664 ATTAAAATTTGCCATGTCTATTGCAT 57.032 26.923 0.00 0.00 35.21 3.96
214 215 7.495279 GGATTAAAATTTGCCATGTCTATTGCA 59.505 33.333 0.00 0.00 33.58 4.08
215 216 7.495279 TGGATTAAAATTTGCCATGTCTATTGC 59.505 33.333 0.00 0.00 0.00 3.56
216 217 8.945481 TGGATTAAAATTTGCCATGTCTATTG 57.055 30.769 0.00 0.00 0.00 1.90
219 220 9.956640 AAATTGGATTAAAATTTGCCATGTCTA 57.043 25.926 0.00 0.00 36.21 2.59
220 221 8.866970 AAATTGGATTAAAATTTGCCATGTCT 57.133 26.923 0.00 0.00 36.21 3.41
221 222 9.911138 AAAAATTGGATTAAAATTTGCCATGTC 57.089 25.926 0.00 0.00 37.32 3.06
251 252 9.382275 TGAGATCTTCGAAATATGTTTTGATGA 57.618 29.630 17.55 17.55 41.92 2.92
254 255 8.542953 CGATGAGATCTTCGAAATATGTTTTGA 58.457 33.333 10.67 0.94 43.48 2.69
255 256 7.319851 GCGATGAGATCTTCGAAATATGTTTTG 59.680 37.037 18.67 0.00 43.48 2.44
256 257 7.348201 GCGATGAGATCTTCGAAATATGTTTT 58.652 34.615 18.67 0.00 43.48 2.43
257 258 6.346120 CGCGATGAGATCTTCGAAATATGTTT 60.346 38.462 18.67 0.00 43.48 2.83
258 259 5.117745 CGCGATGAGATCTTCGAAATATGTT 59.882 40.000 18.67 0.00 43.48 2.71
259 260 4.618912 CGCGATGAGATCTTCGAAATATGT 59.381 41.667 18.67 0.00 43.48 2.29
260 261 4.853743 TCGCGATGAGATCTTCGAAATATG 59.146 41.667 18.67 3.26 43.48 1.78
261 262 5.048153 TCGCGATGAGATCTTCGAAATAT 57.952 39.130 18.67 0.00 43.48 1.28
262 263 4.483476 TCGCGATGAGATCTTCGAAATA 57.517 40.909 18.67 0.33 43.48 1.40
263 264 3.355626 TCGCGATGAGATCTTCGAAAT 57.644 42.857 18.67 0.00 43.48 2.17
264 265 2.844122 TCGCGATGAGATCTTCGAAA 57.156 45.000 18.67 4.66 43.48 3.46
274 275 3.653344 TCATTAAATCCCTCGCGATGAG 58.347 45.455 10.36 0.80 44.83 2.90
275 276 3.744238 TCATTAAATCCCTCGCGATGA 57.256 42.857 10.36 10.40 0.00 2.92
276 277 3.996363 TCATCATTAAATCCCTCGCGATG 59.004 43.478 10.36 6.89 0.00 3.84
277 278 4.271696 TCATCATTAAATCCCTCGCGAT 57.728 40.909 10.36 0.00 0.00 4.58
278 279 3.744238 TCATCATTAAATCCCTCGCGA 57.256 42.857 9.26 9.26 0.00 5.87
279 280 4.811555 TTTCATCATTAAATCCCTCGCG 57.188 40.909 0.00 0.00 0.00 5.87
280 281 4.970003 CGTTTTCATCATTAAATCCCTCGC 59.030 41.667 0.00 0.00 0.00 5.03
281 282 5.295787 TCCGTTTTCATCATTAAATCCCTCG 59.704 40.000 0.00 0.00 0.00 4.63
282 283 6.693315 TCCGTTTTCATCATTAAATCCCTC 57.307 37.500 0.00 0.00 0.00 4.30
283 284 7.660030 AATCCGTTTTCATCATTAAATCCCT 57.340 32.000 0.00 0.00 0.00 4.20
284 285 8.716646 AAAATCCGTTTTCATCATTAAATCCC 57.283 30.769 0.00 0.00 32.14 3.85
298 299 7.722795 AAAAATCCGATTGAAAATCCGTTTT 57.277 28.000 0.00 0.00 40.13 2.43
345 346 9.685276 AGGAATCTTTTTGGATTTTCAGTTTTT 57.315 25.926 0.00 0.00 36.24 1.94
346 347 9.112725 CAGGAATCTTTTTGGATTTTCAGTTTT 57.887 29.630 0.00 0.00 36.24 2.43
347 348 7.227314 GCAGGAATCTTTTTGGATTTTCAGTTT 59.773 33.333 0.00 0.00 36.24 2.66
348 349 6.707608 GCAGGAATCTTTTTGGATTTTCAGTT 59.292 34.615 0.00 0.00 36.24 3.16
349 350 6.183360 TGCAGGAATCTTTTTGGATTTTCAGT 60.183 34.615 0.00 0.00 36.24 3.41
350 351 6.225318 TGCAGGAATCTTTTTGGATTTTCAG 58.775 36.000 0.00 0.00 36.24 3.02
351 352 6.172136 TGCAGGAATCTTTTTGGATTTTCA 57.828 33.333 0.00 0.00 36.24 2.69
352 353 6.402875 GCATGCAGGAATCTTTTTGGATTTTC 60.403 38.462 14.21 0.00 36.24 2.29
353 354 5.413523 GCATGCAGGAATCTTTTTGGATTTT 59.586 36.000 14.21 0.00 36.24 1.82
354 355 4.939439 GCATGCAGGAATCTTTTTGGATTT 59.061 37.500 14.21 0.00 36.24 2.17
355 356 4.020039 TGCATGCAGGAATCTTTTTGGATT 60.020 37.500 18.46 0.00 38.47 3.01
356 357 3.516300 TGCATGCAGGAATCTTTTTGGAT 59.484 39.130 18.46 0.00 0.00 3.41
357 358 2.898612 TGCATGCAGGAATCTTTTTGGA 59.101 40.909 18.46 0.00 0.00 3.53
358 359 3.322211 TGCATGCAGGAATCTTTTTGG 57.678 42.857 18.46 0.00 0.00 3.28
359 360 4.857871 CATGCATGCAGGAATCTTTTTG 57.142 40.909 27.49 11.28 0.00 2.44
377 378 1.010462 CCACGTCATCGCATGCATG 60.010 57.895 22.70 22.70 41.18 4.06
378 379 2.827051 GCCACGTCATCGCATGCAT 61.827 57.895 19.57 7.64 41.18 3.96
379 380 3.498834 GCCACGTCATCGCATGCA 61.499 61.111 19.57 5.34 41.18 3.96
380 381 2.327002 ATTGCCACGTCATCGCATGC 62.327 55.000 7.91 7.91 41.18 4.06
381 382 0.316442 GATTGCCACGTCATCGCATG 60.316 55.000 0.00 0.00 41.18 4.06
382 383 0.462581 AGATTGCCACGTCATCGCAT 60.463 50.000 0.00 0.00 41.18 4.73
383 384 1.079197 AGATTGCCACGTCATCGCA 60.079 52.632 0.00 0.00 41.18 5.10
384 385 1.349627 CAGATTGCCACGTCATCGC 59.650 57.895 0.00 0.00 41.18 4.58
385 386 1.078709 AACAGATTGCCACGTCATCG 58.921 50.000 0.00 0.00 43.34 3.84
386 387 3.435327 TGTAAACAGATTGCCACGTCATC 59.565 43.478 0.00 0.00 0.00 2.92
387 388 3.407698 TGTAAACAGATTGCCACGTCAT 58.592 40.909 0.00 0.00 0.00 3.06
388 389 2.839975 TGTAAACAGATTGCCACGTCA 58.160 42.857 0.00 0.00 0.00 4.35
389 390 4.419522 AATGTAAACAGATTGCCACGTC 57.580 40.909 0.00 0.00 0.00 4.34
390 391 5.950758 TTAATGTAAACAGATTGCCACGT 57.049 34.783 0.00 0.00 0.00 4.49
391 392 7.498225 GTTTTTAATGTAAACAGATTGCCACG 58.502 34.615 0.00 0.00 35.94 4.94
392 393 7.168469 ACGTTTTTAATGTAAACAGATTGCCAC 59.832 33.333 0.00 0.00 35.69 5.01
393 394 7.168302 CACGTTTTTAATGTAAACAGATTGCCA 59.832 33.333 0.00 0.00 35.69 4.92
394 395 7.168469 ACACGTTTTTAATGTAAACAGATTGCC 59.832 33.333 0.00 0.00 35.69 4.52
395 396 7.995998 CACACGTTTTTAATGTAAACAGATTGC 59.004 33.333 0.00 0.00 35.69 3.56
396 397 8.476142 CCACACGTTTTTAATGTAAACAGATTG 58.524 33.333 0.00 0.00 35.69 2.67
397 398 8.192110 ACCACACGTTTTTAATGTAAACAGATT 58.808 29.630 0.00 0.00 35.69 2.40
398 399 7.646130 CACCACACGTTTTTAATGTAAACAGAT 59.354 33.333 0.00 0.00 35.69 2.90
399 400 6.967767 CACCACACGTTTTTAATGTAAACAGA 59.032 34.615 0.00 0.00 35.69 3.41
400 401 6.291374 GCACCACACGTTTTTAATGTAAACAG 60.291 38.462 0.00 0.00 35.69 3.16
401 402 5.515626 GCACCACACGTTTTTAATGTAAACA 59.484 36.000 0.00 0.00 35.69 2.83
402 403 5.330939 CGCACCACACGTTTTTAATGTAAAC 60.331 40.000 0.00 0.00 33.28 2.01
403 404 4.733887 CGCACCACACGTTTTTAATGTAAA 59.266 37.500 0.00 0.00 0.00 2.01
404 405 4.201891 ACGCACCACACGTTTTTAATGTAA 60.202 37.500 0.00 0.00 41.93 2.41
405 406 3.311871 ACGCACCACACGTTTTTAATGTA 59.688 39.130 0.00 0.00 41.93 2.29
406 407 2.097791 ACGCACCACACGTTTTTAATGT 59.902 40.909 0.00 0.00 41.93 2.71
407 408 2.717011 GACGCACCACACGTTTTTAATG 59.283 45.455 0.00 0.00 45.24 1.90
408 409 2.614983 AGACGCACCACACGTTTTTAAT 59.385 40.909 0.00 0.00 45.24 1.40
409 410 2.008329 AGACGCACCACACGTTTTTAA 58.992 42.857 0.00 0.00 45.24 1.52
410 411 1.654317 AGACGCACCACACGTTTTTA 58.346 45.000 0.00 0.00 45.24 1.52
411 412 0.806241 AAGACGCACCACACGTTTTT 59.194 45.000 0.00 0.00 45.24 1.94
412 413 0.375803 GAAGACGCACCACACGTTTT 59.624 50.000 0.00 0.00 45.24 2.43
413 414 1.433837 GGAAGACGCACCACACGTTT 61.434 55.000 0.00 0.00 45.24 3.60
414 415 1.885850 GGAAGACGCACCACACGTT 60.886 57.895 0.00 0.00 45.24 3.99
416 417 1.557443 GAAGGAAGACGCACCACACG 61.557 60.000 0.00 0.00 0.00 4.49
417 418 1.228657 GGAAGGAAGACGCACCACAC 61.229 60.000 0.00 0.00 0.00 3.82
418 419 1.070786 GGAAGGAAGACGCACCACA 59.929 57.895 0.00 0.00 0.00 4.17
419 420 0.951040 CAGGAAGGAAGACGCACCAC 60.951 60.000 0.00 0.00 0.00 4.16
420 421 1.371183 CAGGAAGGAAGACGCACCA 59.629 57.895 0.00 0.00 0.00 4.17
421 422 2.035442 GCAGGAAGGAAGACGCACC 61.035 63.158 0.00 0.00 0.00 5.01
422 423 2.035442 GGCAGGAAGGAAGACGCAC 61.035 63.158 0.00 0.00 0.00 5.34
423 424 2.347490 GGCAGGAAGGAAGACGCA 59.653 61.111 0.00 0.00 0.00 5.24
424 425 2.035442 GTGGCAGGAAGGAAGACGC 61.035 63.158 0.00 0.00 0.00 5.19
425 426 0.951040 GTGTGGCAGGAAGGAAGACG 60.951 60.000 0.00 0.00 0.00 4.18
426 427 0.951040 CGTGTGGCAGGAAGGAAGAC 60.951 60.000 0.00 0.00 0.00 3.01
427 428 1.371183 CGTGTGGCAGGAAGGAAGA 59.629 57.895 0.00 0.00 0.00 2.87
428 429 1.071471 ACGTGTGGCAGGAAGGAAG 59.929 57.895 0.00 0.00 0.00 3.46
429 430 1.227823 CACGTGTGGCAGGAAGGAA 60.228 57.895 7.58 0.00 0.00 3.36
430 431 2.425592 CACGTGTGGCAGGAAGGA 59.574 61.111 7.58 0.00 0.00 3.36
431 432 2.111043 ACACGTGTGGCAGGAAGG 59.889 61.111 22.71 0.00 34.19 3.46
432 433 3.333414 CACACGTGTGGCAGGAAG 58.667 61.111 35.65 12.08 42.10 3.46
440 441 1.569493 GCTAACTGCCACACGTGTG 59.431 57.895 36.13 36.13 45.23 3.82
441 442 1.954146 CGCTAACTGCCACACGTGT 60.954 57.895 17.22 17.22 38.78 4.49
442 443 2.853210 CGCTAACTGCCACACGTG 59.147 61.111 15.48 15.48 38.78 4.49
443 444 3.041940 GCGCTAACTGCCACACGT 61.042 61.111 0.00 0.00 38.78 4.49
444 445 4.134187 CGCGCTAACTGCCACACG 62.134 66.667 5.56 0.00 38.78 4.49
445 446 2.736995 TCGCGCTAACTGCCACAC 60.737 61.111 5.56 0.00 38.78 3.82
446 447 2.736995 GTCGCGCTAACTGCCACA 60.737 61.111 5.56 0.00 38.78 4.17
447 448 3.488090 GGTCGCGCTAACTGCCAC 61.488 66.667 5.56 0.00 38.78 5.01
448 449 4.752879 GGGTCGCGCTAACTGCCA 62.753 66.667 5.56 0.00 38.78 4.92
449 450 4.752879 TGGGTCGCGCTAACTGCC 62.753 66.667 5.56 2.13 38.78 4.85
450 451 2.740714 CTTGGGTCGCGCTAACTGC 61.741 63.158 5.56 0.00 38.57 4.40
451 452 0.949105 AACTTGGGTCGCGCTAACTG 60.949 55.000 5.56 0.00 0.00 3.16
452 453 0.250166 AAACTTGGGTCGCGCTAACT 60.250 50.000 5.56 0.00 0.00 2.24
453 454 0.589708 AAAACTTGGGTCGCGCTAAC 59.410 50.000 5.56 3.16 0.00 2.34
454 455 2.166821 TAAAACTTGGGTCGCGCTAA 57.833 45.000 5.56 0.00 0.00 3.09
455 456 2.166821 TTAAAACTTGGGTCGCGCTA 57.833 45.000 5.56 0.00 0.00 4.26
456 457 1.530323 ATTAAAACTTGGGTCGCGCT 58.470 45.000 5.56 0.00 0.00 5.92
457 458 2.341318 AATTAAAACTTGGGTCGCGC 57.659 45.000 0.00 0.00 0.00 6.86
458 459 6.017770 TGGATATAATTAAAACTTGGGTCGCG 60.018 38.462 0.00 0.00 0.00 5.87
459 460 7.266922 TGGATATAATTAAAACTTGGGTCGC 57.733 36.000 0.00 0.00 0.00 5.19
460 461 9.062524 TGATGGATATAATTAAAACTTGGGTCG 57.937 33.333 0.00 0.00 0.00 4.79
488 489 7.745717 GCCAGGGCAGGATATAACATAATATA 58.254 38.462 5.20 0.00 41.49 0.86
489 490 6.605119 GCCAGGGCAGGATATAACATAATAT 58.395 40.000 5.20 0.00 41.49 1.28
490 491 6.001449 GCCAGGGCAGGATATAACATAATA 57.999 41.667 5.20 0.00 41.49 0.98
491 492 4.860022 GCCAGGGCAGGATATAACATAAT 58.140 43.478 5.20 0.00 41.49 1.28
492 493 4.301072 GCCAGGGCAGGATATAACATAA 57.699 45.455 5.20 0.00 41.49 1.90
533 535 6.627395 TTGTTTCAACACTTATCCGTTCAT 57.373 33.333 0.00 0.00 38.92 2.57
553 555 0.581529 CGTCATGAGTGTGCGTTTGT 59.418 50.000 0.00 0.00 0.00 2.83
600 631 2.585247 GCGTATCGGGCCTGTGTC 60.585 66.667 12.43 2.13 0.00 3.67
635 666 4.330074 CGCATTGTAAACTAAGTCTCCTGG 59.670 45.833 0.00 0.00 0.00 4.45
645 676 8.813282 CACATAGTACATTCGCATTGTAAACTA 58.187 33.333 0.00 0.00 31.72 2.24
665 696 2.610479 CCTACACCGCCATAGCACATAG 60.610 54.545 0.00 0.00 39.83 2.23
666 697 1.343142 CCTACACCGCCATAGCACATA 59.657 52.381 0.00 0.00 39.83 2.29
667 698 0.106708 CCTACACCGCCATAGCACAT 59.893 55.000 0.00 0.00 39.83 3.21
670 701 2.504032 GCCTACACCGCCATAGCA 59.496 61.111 0.00 0.00 39.83 3.49
692 723 4.934001 GTGGAAGTAACTAAGTACAAGGGC 59.066 45.833 0.00 0.00 0.00 5.19
790 821 0.525668 ATCTGTTGATCGACGACGCC 60.526 55.000 8.59 0.00 39.58 5.68
820 859 4.583871 ACCAGCGAATGAGAAGAAGAAAT 58.416 39.130 0.00 0.00 0.00 2.17
870 909 6.906157 TTTTTATACGAGAGGGATACGGAT 57.094 37.500 0.00 0.00 34.85 4.18
871 910 6.266103 ACATTTTTATACGAGAGGGATACGGA 59.734 38.462 0.00 0.00 37.60 4.69
921 960 8.705134 CGTTTAATTAACAGCGGATCATATGTA 58.295 33.333 1.90 0.00 36.50 2.29
922 961 7.225931 ACGTTTAATTAACAGCGGATCATATGT 59.774 33.333 15.65 0.00 36.50 2.29
989 1028 0.179037 TCTCCCCATCGATCGTACGT 60.179 55.000 15.94 2.33 34.70 3.57
1122 1161 2.301870 GGTGTGGAACTCTATGGTGACA 59.698 50.000 0.00 0.00 41.92 3.58
1263 1302 3.002791 ACACAAGTCACAACACTCACAG 58.997 45.455 0.00 0.00 0.00 3.66
1289 1350 3.279116 AAGCAAGCACGCGCAAGA 61.279 55.556 5.73 0.00 42.27 3.02
1300 1361 0.309922 CAGCCTGACACACAAGCAAG 59.690 55.000 0.00 0.00 38.31 4.01
1302 1363 2.188829 GCAGCCTGACACACAAGCA 61.189 57.895 0.00 0.00 38.31 3.91
1303 1364 1.450531 AAGCAGCCTGACACACAAGC 61.451 55.000 0.00 0.00 36.31 4.01
1304 1365 0.309922 CAAGCAGCCTGACACACAAG 59.690 55.000 0.00 0.00 0.00 3.16
1306 1367 1.096967 CACAAGCAGCCTGACACACA 61.097 55.000 0.00 0.00 0.00 3.72
1307 1368 1.097547 ACACAAGCAGCCTGACACAC 61.098 55.000 0.00 0.00 0.00 3.82
1308 1369 1.096967 CACACAAGCAGCCTGACACA 61.097 55.000 0.00 0.00 0.00 3.72
1309 1370 1.097547 ACACACAAGCAGCCTGACAC 61.098 55.000 0.00 0.00 0.00 3.67
1310 1371 1.096967 CACACACAAGCAGCCTGACA 61.097 55.000 0.00 0.00 0.00 3.58
1311 1372 1.650912 CACACACAAGCAGCCTGAC 59.349 57.895 0.00 0.00 0.00 3.51
1312 1373 1.526686 CCACACACAAGCAGCCTGA 60.527 57.895 0.00 0.00 0.00 3.86
1313 1374 1.825191 ACCACACACAAGCAGCCTG 60.825 57.895 0.00 0.00 0.00 4.85
1314 1375 1.825191 CACCACACACAAGCAGCCT 60.825 57.895 0.00 0.00 0.00 4.58
1315 1376 2.120909 ACACCACACACAAGCAGCC 61.121 57.895 0.00 0.00 0.00 4.85
1316 1377 1.064621 CACACCACACACAAGCAGC 59.935 57.895 0.00 0.00 0.00 5.25
1317 1378 0.378257 GACACACCACACACAAGCAG 59.622 55.000 0.00 0.00 0.00 4.24
1328 1391 0.895530 GCTGGTAGCTAGACACACCA 59.104 55.000 3.81 3.81 38.45 4.17
1329 1392 3.742983 GCTGGTAGCTAGACACACC 57.257 57.895 0.00 0.00 38.45 4.16
1467 1530 8.367911 AGTCAACTGTGATTTAACATCTCAGTA 58.632 33.333 21.79 12.94 46.06 2.74
1489 1552 5.109210 CAAGATCGCTTGGTTACATAGTCA 58.891 41.667 0.00 0.00 46.13 3.41
1514 1577 3.120546 ACAATCGAACACGAATTGCAGAG 60.121 43.478 0.00 0.00 39.45 3.35
1515 1578 2.805671 ACAATCGAACACGAATTGCAGA 59.194 40.909 0.00 0.00 39.45 4.26
1516 1579 3.155998 GACAATCGAACACGAATTGCAG 58.844 45.455 0.00 0.00 39.45 4.41
1517 1580 2.545946 TGACAATCGAACACGAATTGCA 59.454 40.909 0.00 0.00 39.45 4.08
1518 1581 3.181826 TGACAATCGAACACGAATTGC 57.818 42.857 0.00 0.00 39.45 3.56
1519 1582 5.208624 AGATGACAATCGAACACGAATTG 57.791 39.130 0.00 0.00 39.45 2.32
1520 1583 5.862924 AAGATGACAATCGAACACGAATT 57.137 34.783 0.00 0.00 39.45 2.17
1521 1584 5.862924 AAAGATGACAATCGAACACGAAT 57.137 34.783 0.00 0.00 39.45 3.34
1522 1585 5.666969 AAAAGATGACAATCGAACACGAA 57.333 34.783 0.00 0.00 39.45 3.85
1523 1586 5.007234 ACAAAAAGATGACAATCGAACACGA 59.993 36.000 0.00 0.00 37.92 4.35
1524 1587 5.204833 ACAAAAAGATGACAATCGAACACG 58.795 37.500 0.00 0.00 37.92 4.49
1525 1588 7.219917 TGAAACAAAAAGATGACAATCGAACAC 59.780 33.333 0.00 0.00 37.92 3.32
1526 1589 7.254137 TGAAACAAAAAGATGACAATCGAACA 58.746 30.769 0.00 0.00 37.92 3.18
1527 1590 7.678194 TGAAACAAAAAGATGACAATCGAAC 57.322 32.000 0.00 0.00 37.92 3.95
1528 1591 8.352201 AGATGAAACAAAAAGATGACAATCGAA 58.648 29.630 0.00 0.00 37.92 3.71
1529 1592 7.804600 CAGATGAAACAAAAAGATGACAATCGA 59.195 33.333 0.00 0.00 37.92 3.59
1530 1593 7.061441 CCAGATGAAACAAAAAGATGACAATCG 59.939 37.037 0.00 0.00 37.92 3.34
1531 1594 7.330208 CCCAGATGAAACAAAAAGATGACAATC 59.670 37.037 0.00 0.00 0.00 2.67
1532 1595 7.156673 CCCAGATGAAACAAAAAGATGACAAT 58.843 34.615 0.00 0.00 0.00 2.71
1533 1596 6.514947 CCCAGATGAAACAAAAAGATGACAA 58.485 36.000 0.00 0.00 0.00 3.18
1534 1597 5.509501 GCCCAGATGAAACAAAAAGATGACA 60.510 40.000 0.00 0.00 0.00 3.58
1535 1598 4.925646 GCCCAGATGAAACAAAAAGATGAC 59.074 41.667 0.00 0.00 0.00 3.06
1536 1599 4.588106 TGCCCAGATGAAACAAAAAGATGA 59.412 37.500 0.00 0.00 0.00 2.92
1537 1600 4.885413 TGCCCAGATGAAACAAAAAGATG 58.115 39.130 0.00 0.00 0.00 2.90
1538 1601 5.484715 CATGCCCAGATGAAACAAAAAGAT 58.515 37.500 0.00 0.00 0.00 2.40
1539 1602 4.262549 CCATGCCCAGATGAAACAAAAAGA 60.263 41.667 0.00 0.00 0.00 2.52
1540 1603 3.998341 CCATGCCCAGATGAAACAAAAAG 59.002 43.478 0.00 0.00 0.00 2.27
1541 1604 3.390639 ACCATGCCCAGATGAAACAAAAA 59.609 39.130 0.00 0.00 0.00 1.94
1542 1605 2.971330 ACCATGCCCAGATGAAACAAAA 59.029 40.909 0.00 0.00 0.00 2.44
1543 1606 2.299582 CACCATGCCCAGATGAAACAAA 59.700 45.455 0.00 0.00 0.00 2.83
1544 1607 1.894466 CACCATGCCCAGATGAAACAA 59.106 47.619 0.00 0.00 0.00 2.83
1545 1608 1.548081 CACCATGCCCAGATGAAACA 58.452 50.000 0.00 0.00 0.00 2.83
1546 1609 0.174162 GCACCATGCCCAGATGAAAC 59.826 55.000 0.00 0.00 37.42 2.78
1547 1610 0.251698 TGCACCATGCCCAGATGAAA 60.252 50.000 0.00 0.00 44.23 2.69
1548 1611 0.032912 ATGCACCATGCCCAGATGAA 60.033 50.000 0.00 0.00 44.23 2.57
1549 1612 0.753848 CATGCACCATGCCCAGATGA 60.754 55.000 0.00 0.00 44.23 2.92
1550 1613 1.739667 CATGCACCATGCCCAGATG 59.260 57.895 0.00 0.00 44.23 2.90
1551 1614 4.270482 CATGCACCATGCCCAGAT 57.730 55.556 0.00 0.00 44.23 2.90
1558 1621 4.693566 AGAAAAATCTTTGCATGCACCATG 59.306 37.500 22.58 9.41 43.91 3.66
1559 1622 4.901868 AGAAAAATCTTTGCATGCACCAT 58.098 34.783 22.58 9.67 0.00 3.55
1560 1623 4.339872 AGAAAAATCTTTGCATGCACCA 57.660 36.364 22.58 9.40 0.00 4.17
1561 1624 5.678132 AAAGAAAAATCTTTGCATGCACC 57.322 34.783 22.58 1.33 38.39 5.01
1562 1625 6.646240 TCCTAAAGAAAAATCTTTGCATGCAC 59.354 34.615 22.58 5.37 39.89 4.57
1563 1626 6.757237 TCCTAAAGAAAAATCTTTGCATGCA 58.243 32.000 18.46 18.46 39.89 3.96
1564 1627 6.312180 CCTCCTAAAGAAAAATCTTTGCATGC 59.688 38.462 11.82 11.82 39.89 4.06
1565 1628 6.815142 CCCTCCTAAAGAAAAATCTTTGCATG 59.185 38.462 12.74 0.00 39.89 4.06
1566 1629 6.498303 ACCCTCCTAAAGAAAAATCTTTGCAT 59.502 34.615 12.74 0.00 39.89 3.96
1567 1630 5.838521 ACCCTCCTAAAGAAAAATCTTTGCA 59.161 36.000 12.74 0.00 39.89 4.08
1568 1631 6.159293 CACCCTCCTAAAGAAAAATCTTTGC 58.841 40.000 12.74 0.00 39.89 3.68
1569 1632 6.295292 CCCACCCTCCTAAAGAAAAATCTTTG 60.295 42.308 12.74 4.63 39.89 2.77
1570 1633 5.780282 CCCACCCTCCTAAAGAAAAATCTTT 59.220 40.000 8.67 8.67 42.05 2.52
1571 1634 5.075900 TCCCACCCTCCTAAAGAAAAATCTT 59.924 40.000 0.00 0.00 0.00 2.40
1572 1635 4.606255 TCCCACCCTCCTAAAGAAAAATCT 59.394 41.667 0.00 0.00 0.00 2.40
1573 1636 4.930696 TCCCACCCTCCTAAAGAAAAATC 58.069 43.478 0.00 0.00 0.00 2.17
1574 1637 5.272402 CATCCCACCCTCCTAAAGAAAAAT 58.728 41.667 0.00 0.00 0.00 1.82
1575 1638 4.510205 CCATCCCACCCTCCTAAAGAAAAA 60.510 45.833 0.00 0.00 0.00 1.94
1576 1639 3.011257 CCATCCCACCCTCCTAAAGAAAA 59.989 47.826 0.00 0.00 0.00 2.29
1577 1640 2.580783 CCATCCCACCCTCCTAAAGAAA 59.419 50.000 0.00 0.00 0.00 2.52
1578 1641 2.205342 CCATCCCACCCTCCTAAAGAA 58.795 52.381 0.00 0.00 0.00 2.52
1579 1642 1.628043 CCCATCCCACCCTCCTAAAGA 60.628 57.143 0.00 0.00 0.00 2.52
1580 1643 0.846693 CCCATCCCACCCTCCTAAAG 59.153 60.000 0.00 0.00 0.00 1.85
1581 1644 0.626277 CCCCATCCCACCCTCCTAAA 60.626 60.000 0.00 0.00 0.00 1.85
1582 1645 1.005556 CCCCATCCCACCCTCCTAA 59.994 63.158 0.00 0.00 0.00 2.69
1583 1646 2.709396 CCCCATCCCACCCTCCTA 59.291 66.667 0.00 0.00 0.00 2.94
1584 1647 4.455137 CCCCCATCCCACCCTCCT 62.455 72.222 0.00 0.00 0.00 3.69
1585 1648 4.448340 TCCCCCATCCCACCCTCC 62.448 72.222 0.00 0.00 0.00 4.30
1586 1649 2.774351 CTCCCCCATCCCACCCTC 60.774 72.222 0.00 0.00 0.00 4.30
1587 1650 4.455137 CCTCCCCCATCCCACCCT 62.455 72.222 0.00 0.00 0.00 4.34
1588 1651 4.448340 TCCTCCCCCATCCCACCC 62.448 72.222 0.00 0.00 0.00 4.61
1589 1652 2.774351 CTCCTCCCCCATCCCACC 60.774 72.222 0.00 0.00 0.00 4.61
1590 1653 2.774351 CCTCCTCCCCCATCCCAC 60.774 72.222 0.00 0.00 0.00 4.61
1591 1654 4.122670 CCCTCCTCCCCCATCCCA 62.123 72.222 0.00 0.00 0.00 4.37
1592 1655 4.928520 CCCCTCCTCCCCCATCCC 62.929 77.778 0.00 0.00 0.00 3.85
1593 1656 3.677689 AACCCCTCCTCCCCCATCC 62.678 68.421 0.00 0.00 0.00 3.51
1594 1657 2.044620 AACCCCTCCTCCCCCATC 59.955 66.667 0.00 0.00 0.00 3.51
1595 1658 2.044620 GAACCCCTCCTCCCCCAT 59.955 66.667 0.00 0.00 0.00 4.00
1596 1659 3.547737 TGAACCCCTCCTCCCCCA 61.548 66.667 0.00 0.00 0.00 4.96
1597 1660 3.015753 GTGAACCCCTCCTCCCCC 61.016 72.222 0.00 0.00 0.00 5.40
1598 1661 3.400054 CGTGAACCCCTCCTCCCC 61.400 72.222 0.00 0.00 0.00 4.81
1599 1662 4.097361 GCGTGAACCCCTCCTCCC 62.097 72.222 0.00 0.00 0.00 4.30
1600 1663 2.406002 TTTGCGTGAACCCCTCCTCC 62.406 60.000 0.00 0.00 0.00 4.30
1601 1664 0.955919 CTTTGCGTGAACCCCTCCTC 60.956 60.000 0.00 0.00 0.00 3.71
1602 1665 1.073199 CTTTGCGTGAACCCCTCCT 59.927 57.895 0.00 0.00 0.00 3.69
1603 1666 0.322546 ATCTTTGCGTGAACCCCTCC 60.323 55.000 0.00 0.00 0.00 4.30
1604 1667 0.804989 CATCTTTGCGTGAACCCCTC 59.195 55.000 0.00 0.00 0.00 4.30
1605 1668 0.609131 CCATCTTTGCGTGAACCCCT 60.609 55.000 0.00 0.00 0.00 4.79
1606 1669 1.595093 CCCATCTTTGCGTGAACCCC 61.595 60.000 0.00 0.00 0.00 4.95
1607 1670 0.608035 TCCCATCTTTGCGTGAACCC 60.608 55.000 0.00 0.00 0.00 4.11
1608 1671 0.521735 GTCCCATCTTTGCGTGAACC 59.478 55.000 0.00 0.00 0.00 3.62
1609 1672 1.197721 CTGTCCCATCTTTGCGTGAAC 59.802 52.381 0.00 0.00 0.00 3.18
1610 1673 1.202758 ACTGTCCCATCTTTGCGTGAA 60.203 47.619 0.00 0.00 0.00 3.18
1611 1674 0.396435 ACTGTCCCATCTTTGCGTGA 59.604 50.000 0.00 0.00 0.00 4.35
1612 1675 0.798776 GACTGTCCCATCTTTGCGTG 59.201 55.000 0.00 0.00 0.00 5.34
1613 1676 0.687354 AGACTGTCCCATCTTTGCGT 59.313 50.000 3.76 0.00 0.00 5.24
1614 1677 1.338105 TGAGACTGTCCCATCTTTGCG 60.338 52.381 3.76 0.00 0.00 4.85
1615 1678 2.289945 ACTGAGACTGTCCCATCTTTGC 60.290 50.000 3.76 0.00 0.00 3.68
1616 1679 3.260380 AGACTGAGACTGTCCCATCTTTG 59.740 47.826 3.76 0.00 33.73 2.77
1617 1680 3.513515 GAGACTGAGACTGTCCCATCTTT 59.486 47.826 3.76 0.00 33.73 2.52
1618 1681 3.096092 GAGACTGAGACTGTCCCATCTT 58.904 50.000 3.76 0.00 33.73 2.40
1619 1682 2.042297 TGAGACTGAGACTGTCCCATCT 59.958 50.000 3.76 4.37 33.73 2.90
1620 1683 2.165437 GTGAGACTGAGACTGTCCCATC 59.835 54.545 3.76 0.00 33.73 3.51
1621 1684 2.175202 GTGAGACTGAGACTGTCCCAT 58.825 52.381 3.76 0.00 33.73 4.00
1622 1685 1.133482 TGTGAGACTGAGACTGTCCCA 60.133 52.381 3.76 0.00 33.73 4.37
1623 1686 1.271102 GTGTGAGACTGAGACTGTCCC 59.729 57.143 3.76 0.00 33.73 4.46
1624 1687 1.271102 GGTGTGAGACTGAGACTGTCC 59.729 57.143 3.76 0.00 33.73 4.02
1625 1688 1.957177 TGGTGTGAGACTGAGACTGTC 59.043 52.381 0.00 0.00 33.50 3.51
1626 1689 2.073252 TGGTGTGAGACTGAGACTGT 57.927 50.000 0.00 0.00 0.00 3.55
1627 1690 2.865670 GCTTGGTGTGAGACTGAGACTG 60.866 54.545 0.00 0.00 0.00 3.51
1628 1691 1.342819 GCTTGGTGTGAGACTGAGACT 59.657 52.381 0.00 0.00 0.00 3.24
1629 1692 1.789506 GCTTGGTGTGAGACTGAGAC 58.210 55.000 0.00 0.00 0.00 3.36
1630 1693 0.315251 CGCTTGGTGTGAGACTGAGA 59.685 55.000 0.00 0.00 0.00 3.27
1631 1694 0.315251 TCGCTTGGTGTGAGACTGAG 59.685 55.000 0.00 0.00 0.00 3.35
1632 1695 2.425562 TCGCTTGGTGTGAGACTGA 58.574 52.632 0.00 0.00 0.00 3.41
1638 1701 0.601057 TTCGATCTCGCTTGGTGTGA 59.399 50.000 0.00 0.00 39.60 3.58
1639 1702 1.428448 TTTCGATCTCGCTTGGTGTG 58.572 50.000 0.00 0.00 39.60 3.82
1640 1703 2.002586 CATTTCGATCTCGCTTGGTGT 58.997 47.619 0.00 0.00 39.60 4.16
1641 1704 2.029728 GTCATTTCGATCTCGCTTGGTG 59.970 50.000 0.00 0.00 39.60 4.17
1642 1705 2.093973 AGTCATTTCGATCTCGCTTGGT 60.094 45.455 0.00 0.00 39.60 3.67
1643 1706 2.544685 AGTCATTTCGATCTCGCTTGG 58.455 47.619 0.00 0.00 39.60 3.61
1644 1707 4.355437 ACTAGTCATTTCGATCTCGCTTG 58.645 43.478 0.00 0.00 39.60 4.01
1645 1708 4.640789 ACTAGTCATTTCGATCTCGCTT 57.359 40.909 0.00 0.00 39.60 4.68
1646 1709 4.640789 AACTAGTCATTTCGATCTCGCT 57.359 40.909 0.00 0.00 39.60 4.93
1647 1710 6.691818 TCTTTAACTAGTCATTTCGATCTCGC 59.308 38.462 0.00 0.00 39.60 5.03
1648 1711 7.911205 ACTCTTTAACTAGTCATTTCGATCTCG 59.089 37.037 0.00 0.00 41.45 4.04
1653 1716 9.622004 CAAGTACTCTTTAACTAGTCATTTCGA 57.378 33.333 0.00 0.00 0.00 3.71
1791 1855 6.753744 GGATGCACAATTCAAGAGATAAAACC 59.246 38.462 0.00 0.00 0.00 3.27
1804 1868 5.687285 GGTTCGATATTTGGATGCACAATTC 59.313 40.000 0.00 0.00 0.00 2.17
1807 1871 3.064682 CGGTTCGATATTTGGATGCACAA 59.935 43.478 0.00 0.00 0.00 3.33
1875 1939 8.635765 AAGTTTGTCAATACCTATCAACATGT 57.364 30.769 0.00 0.00 0.00 3.21
2090 2180 2.961522 CACGGTTGTGCTAATTTCGT 57.038 45.000 0.00 0.00 39.67 3.85
2119 2209 3.444916 GCGAGAGTCACGGATTTGATTA 58.555 45.455 11.95 0.00 0.00 1.75
2122 2212 0.456142 CGCGAGAGTCACGGATTTGA 60.456 55.000 11.95 0.00 0.00 2.69
2127 2217 1.209383 CTTTCGCGAGAGTCACGGA 59.791 57.895 17.92 4.81 43.69 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.