Multiple sequence alignment - TraesCS6B01G107100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G107100 chr6B 100.000 2228 0 0 1 2228 87558172 87560399 0.000000e+00 4115.0
1 TraesCS6B01G107100 chr6B 95.238 357 11 2 712 1068 84925532 84925182 5.370000e-156 560.0
2 TraesCS6B01G107100 chr6B 94.068 118 7 0 1067 1184 84923691 84923574 1.760000e-41 180.0
3 TraesCS6B01G107100 chr6A 90.410 1366 84 30 1 1349 48793325 48794660 0.000000e+00 1753.0
4 TraesCS6B01G107100 chr6A 90.000 240 20 3 1745 1980 48803209 48803448 7.730000e-80 307.0
5 TraesCS6B01G107100 chr6A 91.667 216 16 1 2010 2225 48803449 48803662 4.650000e-77 298.0
6 TraesCS6B01G107100 chr6A 96.970 33 1 0 1974 2006 48870846 48870878 3.090000e-04 56.5
7 TraesCS6B01G107100 chr6D 92.067 1248 68 21 112 1349 37447785 37449011 0.000000e+00 1727.0
8 TraesCS6B01G107100 chr6D 85.985 685 58 17 1564 2225 37449280 37449949 0.000000e+00 699.0
9 TraesCS6B01G107100 chr6D 83.529 85 11 2 1 82 37447689 37447773 2.370000e-10 76.8
10 TraesCS6B01G107100 chr3B 100.000 31 0 0 1974 2004 70384063 70384093 8.590000e-05 58.4
11 TraesCS6B01G107100 chr3B 100.000 30 0 0 1975 2004 70416380 70416409 3.090000e-04 56.5
12 TraesCS6B01G107100 chr3D 100.000 30 0 0 1975 2004 45029492 45029521 3.090000e-04 56.5
13 TraesCS6B01G107100 chr3D 100.000 30 0 0 1975 2004 45033473 45033502 3.090000e-04 56.5
14 TraesCS6B01G107100 chr3D 100.000 30 0 0 1975 2004 45041254 45041283 3.090000e-04 56.5
15 TraesCS6B01G107100 chr3D 100.000 30 0 0 1975 2004 45045290 45045319 3.090000e-04 56.5
16 TraesCS6B01G107100 chr3D 100.000 30 0 0 1975 2004 45052307 45052336 3.090000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G107100 chr6B 87558172 87560399 2227 False 4115.000000 4115 100.000000 1 2228 1 chr6B.!!$F1 2227
1 TraesCS6B01G107100 chr6B 84923574 84925532 1958 True 370.000000 560 94.653000 712 1184 2 chr6B.!!$R1 472
2 TraesCS6B01G107100 chr6A 48793325 48794660 1335 False 1753.000000 1753 90.410000 1 1349 1 chr6A.!!$F1 1348
3 TraesCS6B01G107100 chr6D 37447689 37449949 2260 False 834.266667 1727 87.193667 1 2225 3 chr6D.!!$F1 2224

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 793 0.175989 GCTAAGTAGACCGGCAAGCT 59.824 55.0 0.0 0.0 0.0 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2182 3796 0.107508 ATTCATGGACACAGGAGCGG 60.108 55.0 0.0 0.0 38.79 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.817517 TCATCTACCAAAGACCGAGAAAC 58.182 43.478 0.00 0.00 36.93 2.78
39 42 4.216257 ACCAAAGACCGAGAAACAATGATG 59.784 41.667 0.00 0.00 0.00 3.07
42 45 5.869753 AAGACCGAGAAACAATGATGAAG 57.130 39.130 0.00 0.00 0.00 3.02
43 46 4.899502 AGACCGAGAAACAATGATGAAGT 58.100 39.130 0.00 0.00 0.00 3.01
62 65 1.128692 GTCAACGCTCAGGTAACATGC 59.871 52.381 0.00 0.00 41.41 4.06
69 72 3.853671 CGCTCAGGTAACATGCAATTTTC 59.146 43.478 0.00 0.00 41.41 2.29
71 74 4.082026 GCTCAGGTAACATGCAATTTTCCT 60.082 41.667 0.00 0.00 41.41 3.36
73 76 6.024552 TCAGGTAACATGCAATTTTCCTTC 57.975 37.500 6.20 0.00 41.41 3.46
74 77 5.538053 TCAGGTAACATGCAATTTTCCTTCA 59.462 36.000 6.20 0.00 41.41 3.02
75 78 6.041409 TCAGGTAACATGCAATTTTCCTTCAA 59.959 34.615 6.20 0.00 41.41 2.69
80 89 7.486802 AACATGCAATTTTCCTTCAAGAAAG 57.513 32.000 0.00 0.00 37.09 2.62
122 131 8.196802 TGTGTAACATGCATAACAGAGAATAC 57.803 34.615 0.00 0.00 45.67 1.89
145 154 9.775854 ATACAATTTGTCAGAAGGATAGATGAG 57.224 33.333 5.07 0.00 0.00 2.90
167 176 5.136105 AGGTCAGAGCAACTTTTCTTGAAT 58.864 37.500 1.66 0.00 0.00 2.57
201 210 5.499139 TTTGAAAGTCCAACAAGCTACTG 57.501 39.130 0.00 0.00 0.00 2.74
214 223 1.065854 AGCTACTGGATGAGCACCAAC 60.066 52.381 0.00 0.00 41.36 3.77
215 224 1.339055 GCTACTGGATGAGCACCAACA 60.339 52.381 0.00 0.00 38.62 3.33
216 225 2.875672 GCTACTGGATGAGCACCAACAA 60.876 50.000 0.00 0.00 38.62 2.83
235 244 3.339253 AACCCGTAGTTGGATGGTTAC 57.661 47.619 0.00 0.00 37.53 2.50
236 245 1.205417 ACCCGTAGTTGGATGGTTACG 59.795 52.381 0.00 0.00 38.77 3.18
269 278 4.295905 ACTCCCAACCCATCCTAGATAA 57.704 45.455 0.00 0.00 0.00 1.75
324 333 8.810652 TTAAGGTGAAATATTCTTTTGTGTGC 57.189 30.769 0.00 0.00 0.00 4.57
325 334 5.783111 AGGTGAAATATTCTTTTGTGTGCC 58.217 37.500 0.00 0.00 0.00 5.01
326 335 5.539955 AGGTGAAATATTCTTTTGTGTGCCT 59.460 36.000 0.00 0.00 0.00 4.75
328 337 7.397192 AGGTGAAATATTCTTTTGTGTGCCTAT 59.603 33.333 0.00 0.00 0.00 2.57
329 338 8.682710 GGTGAAATATTCTTTTGTGTGCCTATA 58.317 33.333 0.00 0.00 0.00 1.31
330 339 9.722056 GTGAAATATTCTTTTGTGTGCCTATAG 57.278 33.333 0.00 0.00 0.00 1.31
332 341 9.722056 GAAATATTCTTTTGTGTGCCTATAGTG 57.278 33.333 0.00 0.00 0.00 2.74
333 342 7.807977 ATATTCTTTTGTGTGCCTATAGTGG 57.192 36.000 0.00 0.00 0.00 4.00
349 358 8.709386 CCTATAGTGGCATCTGTAATAACATC 57.291 38.462 0.00 0.00 34.37 3.06
350 359 8.314021 CCTATAGTGGCATCTGTAATAACATCA 58.686 37.037 0.00 0.00 34.37 3.07
393 402 7.441836 TGACTCTGTTCTTTAGCAGACATTTA 58.558 34.615 0.00 0.00 36.89 1.40
402 411 6.816640 TCTTTAGCAGACATTTACGCTTATGT 59.183 34.615 0.00 0.00 37.68 2.29
420 429 1.337728 TGTGTGTGTGGGATGACGATC 60.338 52.381 0.00 0.00 0.00 3.69
436 445 8.612619 GGATGACGATCTAATTGTGTTTATGTT 58.387 33.333 0.00 0.00 0.00 2.71
477 487 4.026744 TCTACAAGAAGCTAGAGGCACAT 58.973 43.478 0.00 0.00 44.79 3.21
498 509 2.870175 TCCCGTGTCAACATTTCCATT 58.130 42.857 0.00 0.00 0.00 3.16
504 515 3.853671 GTGTCAACATTTCCATTCGCATC 59.146 43.478 0.00 0.00 0.00 3.91
543 554 1.069049 CCCCCAAAAAGAGCAACACAG 59.931 52.381 0.00 0.00 0.00 3.66
552 563 3.769739 AGAGCAACACAGGACATACAA 57.230 42.857 0.00 0.00 0.00 2.41
585 596 2.814835 GGTCATTCCGCCCGGGTAT 61.815 63.158 24.63 8.04 37.00 2.73
633 644 9.213799 GAGAATGAAGGATAAGATTACATCACC 57.786 37.037 0.00 0.00 0.00 4.02
657 668 1.276989 ACGTTCATCACACCCGGTATT 59.723 47.619 0.00 0.00 0.00 1.89
684 695 0.947244 AAACCTGTACTCGACGACGT 59.053 50.000 0.00 0.00 40.69 4.34
782 793 0.175989 GCTAAGTAGACCGGCAAGCT 59.824 55.000 0.00 0.00 0.00 3.74
783 794 1.407979 GCTAAGTAGACCGGCAAGCTA 59.592 52.381 0.00 0.00 0.00 3.32
824 835 1.303888 CAGCCTTGCCACCATCACT 60.304 57.895 0.00 0.00 0.00 3.41
827 838 1.296392 CCTTGCCACCATCACTCGA 59.704 57.895 0.00 0.00 0.00 4.04
882 893 2.565834 GTTACCTGGCCACTGTTCTCTA 59.434 50.000 0.00 0.00 0.00 2.43
883 894 1.729586 ACCTGGCCACTGTTCTCTAA 58.270 50.000 0.00 0.00 0.00 2.10
890 902 5.116180 TGGCCACTGTTCTCTAATTATTCG 58.884 41.667 0.00 0.00 0.00 3.34
929 947 9.831737 CCATCTATATAACAAGTTAAAGCATGC 57.168 33.333 10.51 10.51 0.00 4.06
1177 2687 1.231958 GGAACCCAAACGCGTCATCA 61.232 55.000 14.44 0.00 0.00 3.07
1262 2772 3.072768 AGTGACCGACCTACCTATCCTAG 59.927 52.174 0.00 0.00 0.00 3.02
1281 2792 0.741221 GCTAGCCTACGTGCAAGCTT 60.741 55.000 2.29 0.00 36.79 3.74
1297 2808 7.095060 CGTGCAAGCTTGGTCTATATGAATAAT 60.095 37.037 27.10 0.00 0.00 1.28
1336 2847 7.066307 ACACTTGTCACATCCTATGCATATA 57.934 36.000 6.92 0.00 0.00 0.86
1360 2871 6.716898 CTACATGCATGGAGTGTATATGTG 57.283 41.667 28.07 1.97 33.96 3.21
1361 2872 4.392047 ACATGCATGGAGTGTATATGTGG 58.608 43.478 29.41 0.00 31.44 4.17
1362 2873 4.141413 ACATGCATGGAGTGTATATGTGGT 60.141 41.667 29.41 0.48 31.44 4.16
1363 2874 5.071653 ACATGCATGGAGTGTATATGTGGTA 59.928 40.000 29.41 0.00 31.44 3.25
1364 2875 5.823861 TGCATGGAGTGTATATGTGGTAT 57.176 39.130 0.00 0.00 0.00 2.73
1365 2876 5.550290 TGCATGGAGTGTATATGTGGTATG 58.450 41.667 0.00 0.00 0.00 2.39
1366 2877 4.937620 GCATGGAGTGTATATGTGGTATGG 59.062 45.833 0.00 0.00 0.00 2.74
1367 2878 5.513094 GCATGGAGTGTATATGTGGTATGGT 60.513 44.000 0.00 0.00 0.00 3.55
1368 2879 6.533730 CATGGAGTGTATATGTGGTATGGTT 58.466 40.000 0.00 0.00 0.00 3.67
1377 2888 8.809066 TGTATATGTGGTATGGTTGTCCTATAC 58.191 37.037 0.00 0.00 32.35 1.47
1381 2892 5.834742 TGTGGTATGGTTGTCCTATACGTAT 59.165 40.000 13.54 13.54 33.10 3.06
1382 2893 6.016024 TGTGGTATGGTTGTCCTATACGTATC 60.016 42.308 12.24 0.00 33.10 2.24
1387 2902 4.456911 TGGTTGTCCTATACGTATCGGATC 59.543 45.833 26.28 20.19 31.29 3.36
1392 2907 3.196469 TCCTATACGTATCGGATCGTCCT 59.804 47.826 21.50 9.39 40.70 3.85
1394 2909 5.069648 TCCTATACGTATCGGATCGTCCTAT 59.930 44.000 21.50 9.04 40.70 2.57
1395 2910 5.404968 CCTATACGTATCGGATCGTCCTATC 59.595 48.000 18.88 0.00 40.70 2.08
1402 2917 3.875125 TCGGATCGTCCTATCTCCTATG 58.125 50.000 3.15 0.00 33.30 2.23
1416 2931 5.147330 TCTCCTATGTGTGTACCAAAGTG 57.853 43.478 0.00 0.00 0.00 3.16
1420 2935 4.630069 CCTATGTGTGTACCAAAGTGCTAC 59.370 45.833 0.00 0.00 0.00 3.58
1423 2938 4.878439 TGTGTGTACCAAAGTGCTACTAG 58.122 43.478 0.00 0.00 0.00 2.57
1424 2939 4.342951 TGTGTGTACCAAAGTGCTACTAGT 59.657 41.667 0.00 0.00 0.00 2.57
1426 2941 6.209986 TGTGTGTACCAAAGTGCTACTAGTAT 59.790 38.462 2.33 0.00 0.00 2.12
1427 2942 7.394077 TGTGTGTACCAAAGTGCTACTAGTATA 59.606 37.037 2.33 0.00 0.00 1.47
1428 2943 8.411683 GTGTGTACCAAAGTGCTACTAGTATAT 58.588 37.037 2.33 0.00 0.00 0.86
1429 2944 9.631257 TGTGTACCAAAGTGCTACTAGTATATA 57.369 33.333 2.33 0.00 0.00 0.86
1430 2945 9.890352 GTGTACCAAAGTGCTACTAGTATATAC 57.110 37.037 2.33 4.60 0.00 1.47
1431 2946 9.631257 TGTACCAAAGTGCTACTAGTATATACA 57.369 33.333 15.18 0.00 0.00 2.29
1452 2967 6.663944 ACAATAATCTGTAGCGAGTTTTCC 57.336 37.500 0.00 0.00 0.00 3.13
1453 2968 5.585047 ACAATAATCTGTAGCGAGTTTTCCC 59.415 40.000 0.00 0.00 0.00 3.97
1454 2969 2.295253 ATCTGTAGCGAGTTTTCCCG 57.705 50.000 0.00 0.00 0.00 5.14
1457 2972 0.320073 TGTAGCGAGTTTTCCCGGTG 60.320 55.000 0.00 0.00 37.66 4.94
1458 2973 0.037975 GTAGCGAGTTTTCCCGGTGA 60.038 55.000 0.00 0.00 37.66 4.02
1464 2979 2.812011 CGAGTTTTCCCGGTGAAGATTT 59.188 45.455 0.00 0.00 33.63 2.17
1465 2980 3.252458 CGAGTTTTCCCGGTGAAGATTTT 59.748 43.478 0.00 0.00 33.63 1.82
1466 2981 4.546570 GAGTTTTCCCGGTGAAGATTTTG 58.453 43.478 0.00 0.00 33.63 2.44
1467 2982 3.057019 GTTTTCCCGGTGAAGATTTTGC 58.943 45.455 0.00 0.00 33.63 3.68
1468 2983 1.988293 TTCCCGGTGAAGATTTTGCA 58.012 45.000 0.00 0.00 0.00 4.08
1469 2984 2.214376 TCCCGGTGAAGATTTTGCAT 57.786 45.000 0.00 0.00 0.00 3.96
1470 2985 2.524306 TCCCGGTGAAGATTTTGCATT 58.476 42.857 0.00 0.00 0.00 3.56
1472 2987 2.230992 CCCGGTGAAGATTTTGCATTGA 59.769 45.455 0.00 0.00 0.00 2.57
1473 2988 3.244976 CCGGTGAAGATTTTGCATTGAC 58.755 45.455 0.00 0.00 0.00 3.18
1474 2989 3.305267 CCGGTGAAGATTTTGCATTGACA 60.305 43.478 0.00 0.00 0.00 3.58
1476 2991 4.383649 CGGTGAAGATTTTGCATTGACAAG 59.616 41.667 0.00 0.00 0.00 3.16
1477 2992 5.531634 GGTGAAGATTTTGCATTGACAAGA 58.468 37.500 0.00 0.00 0.00 3.02
1478 2993 6.161381 GGTGAAGATTTTGCATTGACAAGAT 58.839 36.000 0.00 0.00 0.00 2.40
1479 2994 6.090358 GGTGAAGATTTTGCATTGACAAGATG 59.910 38.462 0.00 0.00 0.00 2.90
1480 2995 6.643770 GTGAAGATTTTGCATTGACAAGATGT 59.356 34.615 0.00 0.00 0.00 3.06
1481 2996 7.170320 GTGAAGATTTTGCATTGACAAGATGTT 59.830 33.333 0.00 6.50 32.50 2.71
1484 2999 2.728690 TGCATTGACAAGATGTTGCC 57.271 45.000 1.83 0.00 37.14 4.52
1485 3000 1.068402 TGCATTGACAAGATGTTGCCG 60.068 47.619 1.83 0.00 37.14 5.69
1486 3001 1.068333 GCATTGACAAGATGTTGCCGT 60.068 47.619 1.83 0.00 37.14 5.68
1487 3002 2.855180 CATTGACAAGATGTTGCCGTC 58.145 47.619 1.83 0.00 37.14 4.79
1489 3004 1.960417 TGACAAGATGTTGCCGTCAA 58.040 45.000 1.83 0.00 37.14 3.18
1490 3005 1.872952 TGACAAGATGTTGCCGTCAAG 59.127 47.619 1.83 0.00 37.14 3.02
1491 3006 1.873591 GACAAGATGTTGCCGTCAAGT 59.126 47.619 1.83 0.00 37.14 3.16
1492 3007 2.290641 GACAAGATGTTGCCGTCAAGTT 59.709 45.455 1.83 0.00 37.14 2.66
1494 3009 1.148310 AGATGTTGCCGTCAAGTTCG 58.852 50.000 0.00 0.00 31.93 3.95
1495 3010 0.452784 GATGTTGCCGTCAAGTTCGC 60.453 55.000 0.00 0.00 31.93 4.70
1496 3011 1.163420 ATGTTGCCGTCAAGTTCGCA 61.163 50.000 0.00 0.00 31.93 5.10
1497 3012 1.368850 GTTGCCGTCAAGTTCGCAC 60.369 57.895 0.00 0.00 31.93 5.34
1499 3014 3.335534 GCCGTCAAGTTCGCACGT 61.336 61.111 0.00 0.00 0.00 4.49
1500 3015 2.017783 GCCGTCAAGTTCGCACGTA 61.018 57.895 0.00 0.00 0.00 3.57
1501 3016 1.550659 GCCGTCAAGTTCGCACGTAA 61.551 55.000 0.00 0.00 0.00 3.18
1535 3090 0.890683 CCAGCCGCAGAAAAGGAAAT 59.109 50.000 0.00 0.00 0.00 2.17
1537 3092 1.815003 CAGCCGCAGAAAAGGAAATCT 59.185 47.619 0.00 0.00 0.00 2.40
1539 3094 1.812571 GCCGCAGAAAAGGAAATCTGA 59.187 47.619 6.95 0.00 44.64 3.27
1543 3098 4.409570 CGCAGAAAAGGAAATCTGATGTG 58.590 43.478 6.95 0.00 44.64 3.21
1544 3099 4.083110 CGCAGAAAAGGAAATCTGATGTGT 60.083 41.667 6.95 0.00 44.64 3.72
1556 3111 7.872483 GGAAATCTGATGTGTGTTGGTAAATTT 59.128 33.333 0.00 0.00 0.00 1.82
1581 3164 5.118050 CGTGGTAAATTACATACGCGATGAT 59.882 40.000 15.93 0.00 39.06 2.45
1590 3173 4.933330 ACATACGCGATGATACAAGAAGT 58.067 39.130 15.93 0.00 39.06 3.01
1591 3174 4.976731 ACATACGCGATGATACAAGAAGTC 59.023 41.667 15.93 0.00 39.06 3.01
1595 3178 3.616821 CGCGATGATACAAGAAGTCCAAA 59.383 43.478 0.00 0.00 0.00 3.28
1604 3187 5.432885 ACAAGAAGTCCAAATTTACGTGG 57.567 39.130 0.00 0.00 36.13 4.94
1613 3196 6.866248 AGTCCAAATTTACGTGGCAAATTAAG 59.134 34.615 7.70 4.86 35.15 1.85
1637 3222 2.808958 CGGCGTTAATCCCAGCGTG 61.809 63.158 0.00 0.00 0.00 5.34
1673 3260 3.520290 GCGCCTGCACACCTATATATA 57.480 47.619 0.00 0.00 42.15 0.86
1691 3278 3.312504 CGCTCGGACGTGTATGCG 61.313 66.667 0.00 0.00 37.57 4.73
1693 3280 2.954868 CTCGGACGTGTATGCGGC 60.955 66.667 0.00 0.00 39.56 6.53
1705 3292 2.096268 TGTATGCGGCGTACGTATCTAC 60.096 50.000 23.17 12.32 44.85 2.59
1706 3293 1.233019 ATGCGGCGTACGTATCTACT 58.767 50.000 17.90 0.00 44.85 2.57
1707 3294 1.864565 TGCGGCGTACGTATCTACTA 58.135 50.000 17.90 0.00 46.52 1.82
1708 3295 1.526887 TGCGGCGTACGTATCTACTAC 59.473 52.381 17.90 0.00 46.52 2.73
1711 3298 3.181539 GCGGCGTACGTATCTACTACTAC 60.182 52.174 17.90 0.00 46.52 2.73
1712 3299 3.981416 CGGCGTACGTATCTACTACTACA 59.019 47.826 17.90 0.00 37.93 2.74
1713 3300 4.143514 CGGCGTACGTATCTACTACTACAC 60.144 50.000 17.90 0.00 37.93 2.90
1714 3301 4.985409 GGCGTACGTATCTACTACTACACT 59.015 45.833 17.90 0.00 0.00 3.55
1715 3302 6.150318 GGCGTACGTATCTACTACTACACTA 58.850 44.000 17.90 0.00 0.00 2.74
1716 3303 6.809196 GGCGTACGTATCTACTACTACACTAT 59.191 42.308 17.90 0.00 0.00 2.12
1717 3304 7.968956 GGCGTACGTATCTACTACTACACTATA 59.031 40.741 17.90 0.00 0.00 1.31
1718 3305 9.509855 GCGTACGTATCTACTACTACACTATAT 57.490 37.037 17.90 0.00 0.00 0.86
1742 3329 1.000283 CACGGTCTATCATCTCAGGGC 60.000 57.143 0.00 0.00 0.00 5.19
1778 3392 0.179026 CAGGTCTGGCTAGCATGCAT 60.179 55.000 21.98 7.68 34.04 3.96
1779 3393 0.179026 AGGTCTGGCTAGCATGCATG 60.179 55.000 22.70 22.70 34.04 4.06
1805 3419 6.125327 TGCAATTTTCTTTCTGTTCGTACA 57.875 33.333 0.00 0.00 0.00 2.90
1808 3422 4.782252 TTTTCTTTCTGTTCGTACACCG 57.218 40.909 0.00 0.00 38.13 4.94
1813 3427 2.354891 TGTTCGTACACCGTGCGG 60.355 61.111 9.29 9.29 41.58 5.69
1837 3451 0.519586 GTTGCGCGCGTGCTATTAAA 60.520 50.000 40.02 25.42 39.65 1.52
1841 3455 1.443176 GCGCGCGTGCTATTAAATTTC 59.557 47.619 35.43 4.98 39.65 2.17
1849 3463 5.339990 CGTGCTATTAAATTTCCCTGTTGG 58.660 41.667 0.00 0.00 0.00 3.77
1888 3502 0.110688 CACGTGCGTGTTGGAGATTG 60.111 55.000 15.60 0.00 40.91 2.67
1898 3512 2.805671 TGTTGGAGATTGCAAGTGTACG 59.194 45.455 4.94 0.00 0.00 3.67
2066 3680 1.587034 GACATCGTCCGGTTCGAATTC 59.413 52.381 22.59 18.05 40.61 2.17
2073 3687 1.632046 CCGGTTCGAATTCCACCACG 61.632 60.000 17.65 8.93 0.00 4.94
2075 3689 0.794473 GGTTCGAATTCCACCACGTC 59.206 55.000 14.18 0.00 0.00 4.34
2096 3710 4.830765 GACGCCATGCCGCCAGTA 62.831 66.667 0.00 0.00 0.00 2.74
2099 3713 2.516930 GCCATGCCGCCAGTACAT 60.517 61.111 0.00 0.00 0.00 2.29
2107 3721 1.336887 GCCGCCAGTACATATGACGAT 60.337 52.381 10.38 0.00 0.00 3.73
2129 3743 3.760035 GCGTCCGCCTCTTCCTGA 61.760 66.667 0.00 0.00 34.56 3.86
2140 3754 4.608514 TTCCTGACCCCTGGGCCA 62.609 66.667 7.39 5.85 39.32 5.36
2157 3771 3.735029 AGAGACCGTCGCCGTGAC 61.735 66.667 1.72 1.72 44.53 3.67
2225 3839 4.142004 GGAGTGTCTCGAGGCCTTTAAATA 60.142 45.833 15.72 0.00 0.00 1.40
2226 3840 4.756502 AGTGTCTCGAGGCCTTTAAATAC 58.243 43.478 15.72 2.99 0.00 1.89
2227 3841 3.550678 GTGTCTCGAGGCCTTTAAATACG 59.449 47.826 15.72 3.59 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.097696 TCGGTCTTTGGTAGATGATGATACAA 59.902 38.462 0.00 0.00 34.79 2.41
32 33 3.181513 CCTGAGCGTTGACTTCATCATTG 60.182 47.826 0.00 0.00 37.11 2.82
39 42 2.750948 TGTTACCTGAGCGTTGACTTC 58.249 47.619 0.00 0.00 0.00 3.01
42 45 1.128692 GCATGTTACCTGAGCGTTGAC 59.871 52.381 0.00 0.00 0.00 3.18
43 46 1.270571 TGCATGTTACCTGAGCGTTGA 60.271 47.619 0.00 0.00 0.00 3.18
71 74 5.049680 GCATGACTAAACGACCTTTCTTGAA 60.050 40.000 0.00 0.00 0.00 2.69
73 76 4.378459 GGCATGACTAAACGACCTTTCTTG 60.378 45.833 0.00 0.00 0.00 3.02
74 77 3.751698 GGCATGACTAAACGACCTTTCTT 59.248 43.478 0.00 0.00 0.00 2.52
75 78 3.008049 AGGCATGACTAAACGACCTTTCT 59.992 43.478 0.00 0.00 0.00 2.52
80 89 1.732259 CACAGGCATGACTAAACGACC 59.268 52.381 4.84 0.00 0.00 4.79
81 90 2.413837 ACACAGGCATGACTAAACGAC 58.586 47.619 4.84 0.00 0.00 4.34
110 119 9.219603 CCTTCTGACAAATTGTATTCTCTGTTA 57.780 33.333 0.00 0.00 0.00 2.41
122 131 7.052873 ACCTCATCTATCCTTCTGACAAATTG 58.947 38.462 0.00 0.00 0.00 2.32
145 154 4.900635 TTCAAGAAAAGTTGCTCTGACC 57.099 40.909 0.00 0.00 0.00 4.02
180 189 3.882888 CCAGTAGCTTGTTGGACTTTCAA 59.117 43.478 0.00 0.00 33.76 2.69
201 210 1.586154 CGGGTTGTTGGTGCTCATCC 61.586 60.000 0.00 0.00 0.00 3.51
215 224 2.354003 CGTAACCATCCAACTACGGGTT 60.354 50.000 0.00 0.00 43.74 4.11
216 225 1.205417 CGTAACCATCCAACTACGGGT 59.795 52.381 0.00 0.00 34.84 5.28
235 244 3.458189 GTTGGGAGTACAATCATCCTCG 58.542 50.000 0.00 0.00 33.40 4.63
236 245 3.433740 GGGTTGGGAGTACAATCATCCTC 60.434 52.174 0.00 0.00 33.13 3.71
269 278 3.885297 CACAAGGTGTCAAATCTGAGGTT 59.115 43.478 0.00 0.00 30.14 3.50
323 332 7.106239 ATGTTATTACAGATGCCACTATAGGC 58.894 38.462 4.43 0.00 45.76 3.93
324 333 8.314021 TGATGTTATTACAGATGCCACTATAGG 58.686 37.037 4.43 0.00 37.77 2.57
325 334 9.144747 GTGATGTTATTACAGATGCCACTATAG 57.855 37.037 0.00 0.00 37.77 1.31
326 335 8.094548 GGTGATGTTATTACAGATGCCACTATA 58.905 37.037 0.00 0.00 37.77 1.31
328 337 6.126911 TGGTGATGTTATTACAGATGCCACTA 60.127 38.462 0.00 0.00 37.77 2.74
329 338 5.126067 GGTGATGTTATTACAGATGCCACT 58.874 41.667 0.00 0.00 37.77 4.00
330 339 4.881273 TGGTGATGTTATTACAGATGCCAC 59.119 41.667 0.00 0.00 37.77 5.01
332 341 6.488006 AGATTGGTGATGTTATTACAGATGCC 59.512 38.462 0.00 0.00 37.77 4.40
333 342 7.502120 AGATTGGTGATGTTATTACAGATGC 57.498 36.000 0.00 0.00 37.77 3.91
335 344 7.726216 TCGAGATTGGTGATGTTATTACAGAT 58.274 34.615 0.00 0.00 37.77 2.90
336 345 7.107639 TCGAGATTGGTGATGTTATTACAGA 57.892 36.000 0.00 0.00 37.77 3.41
337 346 7.770801 TTCGAGATTGGTGATGTTATTACAG 57.229 36.000 0.00 0.00 37.77 2.74
338 347 7.822334 AGTTTCGAGATTGGTGATGTTATTACA 59.178 33.333 0.00 0.00 38.95 2.41
339 348 8.197988 AGTTTCGAGATTGGTGATGTTATTAC 57.802 34.615 0.00 0.00 0.00 1.89
340 349 7.494625 GGAGTTTCGAGATTGGTGATGTTATTA 59.505 37.037 0.00 0.00 0.00 0.98
341 350 6.316390 GGAGTTTCGAGATTGGTGATGTTATT 59.684 38.462 0.00 0.00 0.00 1.40
342 351 5.817816 GGAGTTTCGAGATTGGTGATGTTAT 59.182 40.000 0.00 0.00 0.00 1.89
343 352 5.046591 AGGAGTTTCGAGATTGGTGATGTTA 60.047 40.000 0.00 0.00 0.00 2.41
344 353 4.003648 GGAGTTTCGAGATTGGTGATGTT 58.996 43.478 0.00 0.00 0.00 2.71
345 354 3.261897 AGGAGTTTCGAGATTGGTGATGT 59.738 43.478 0.00 0.00 0.00 3.06
346 355 3.866651 AGGAGTTTCGAGATTGGTGATG 58.133 45.455 0.00 0.00 0.00 3.07
347 356 4.020218 TCAAGGAGTTTCGAGATTGGTGAT 60.020 41.667 0.00 0.00 0.00 3.06
348 357 3.323691 TCAAGGAGTTTCGAGATTGGTGA 59.676 43.478 0.00 0.00 0.00 4.02
349 358 3.433615 GTCAAGGAGTTTCGAGATTGGTG 59.566 47.826 0.00 0.00 0.00 4.17
350 359 3.325135 AGTCAAGGAGTTTCGAGATTGGT 59.675 43.478 0.00 0.00 0.00 3.67
393 402 0.394938 TCCCACACACACATAAGCGT 59.605 50.000 0.00 0.00 0.00 5.07
402 411 1.266178 AGATCGTCATCCCACACACA 58.734 50.000 0.00 0.00 0.00 3.72
436 445 6.282167 TGTAGACACCGAGTTTAATGTTGAA 58.718 36.000 0.00 0.00 0.00 2.69
477 487 2.350057 TGGAAATGTTGACACGGGAA 57.650 45.000 0.00 0.00 0.00 3.97
498 509 7.810759 GGGTTTAAAAGAAAAATACAGATGCGA 59.189 33.333 0.00 0.00 0.00 5.10
527 538 3.781079 TGTCCTGTGTTGCTCTTTTTG 57.219 42.857 0.00 0.00 0.00 2.44
543 554 8.621286 ACCGAAAGAATATTCATTTGTATGTCC 58.379 33.333 17.56 0.00 33.34 4.02
579 590 5.245301 TCAAATATGGTGACCTCTATACCCG 59.755 44.000 2.11 0.00 33.51 5.28
585 596 4.707934 TCGTGTCAAATATGGTGACCTCTA 59.292 41.667 2.11 0.00 43.95 2.43
633 644 1.206578 GGGTGTGATGAACGTTGCG 59.793 57.895 5.00 0.00 0.00 4.85
684 695 4.875536 ACTAATAGCATGCATCGTGTTCAA 59.124 37.500 21.98 0.00 0.00 2.69
824 835 2.467880 AGGATTGGGCTCTTAGTTCGA 58.532 47.619 0.00 0.00 0.00 3.71
827 838 3.115390 TGCTAGGATTGGGCTCTTAGTT 58.885 45.455 0.00 0.00 29.90 2.24
882 893 7.548075 AGATGGAGTACGAAACAACGAATAATT 59.452 33.333 0.00 0.00 37.03 1.40
883 894 7.039882 AGATGGAGTACGAAACAACGAATAAT 58.960 34.615 0.00 0.00 37.03 1.28
890 902 9.740239 TGTTATATAGATGGAGTACGAAACAAC 57.260 33.333 0.00 0.00 0.00 3.32
926 944 5.401550 CCAATAAATTCTCAACACACGCAT 58.598 37.500 0.00 0.00 0.00 4.73
929 947 4.793071 TGCCAATAAATTCTCAACACACG 58.207 39.130 0.00 0.00 0.00 4.49
1157 2667 2.235536 GATGACGCGTTTGGGTTCCG 62.236 60.000 15.53 0.00 41.99 4.30
1177 2687 2.766263 TGATCTGGCCGTCTGTAAAGAT 59.234 45.455 0.00 0.00 0.00 2.40
1241 2751 2.361643 AGGATAGGTAGGTCGGTCAC 57.638 55.000 0.00 0.00 0.00 3.67
1281 2792 8.685257 ATCTCCACCATTATTCATATAGACCA 57.315 34.615 0.00 0.00 0.00 4.02
1297 2808 7.125053 TGTGACAAGTGTATTATATCTCCACCA 59.875 37.037 0.00 0.00 0.00 4.17
1308 2819 6.883744 TGCATAGGATGTGACAAGTGTATTA 58.116 36.000 0.00 0.00 0.00 0.98
1309 2820 5.744171 TGCATAGGATGTGACAAGTGTATT 58.256 37.500 0.00 0.00 0.00 1.89
1310 2821 5.357742 TGCATAGGATGTGACAAGTGTAT 57.642 39.130 0.00 0.00 0.00 2.29
1336 2847 6.226052 CACATATACACTCCATGCATGTAGT 58.774 40.000 24.58 21.48 32.58 2.73
1349 2860 5.665812 AGGACAACCATACCACATATACACT 59.334 40.000 0.00 0.00 38.94 3.55
1351 2862 7.865530 ATAGGACAACCATACCACATATACA 57.134 36.000 0.00 0.00 38.94 2.29
1352 2863 7.972277 CGTATAGGACAACCATACCACATATAC 59.028 40.741 0.00 0.00 38.94 1.47
1353 2864 7.670979 ACGTATAGGACAACCATACCACATATA 59.329 37.037 0.00 0.00 38.94 0.86
1354 2865 6.495872 ACGTATAGGACAACCATACCACATAT 59.504 38.462 0.00 0.00 38.94 1.78
1355 2866 5.834742 ACGTATAGGACAACCATACCACATA 59.165 40.000 0.00 0.00 38.94 2.29
1356 2867 4.652421 ACGTATAGGACAACCATACCACAT 59.348 41.667 0.00 0.00 38.94 3.21
1357 2868 4.025360 ACGTATAGGACAACCATACCACA 58.975 43.478 0.00 0.00 38.94 4.17
1358 2869 4.660789 ACGTATAGGACAACCATACCAC 57.339 45.455 0.00 0.00 38.94 4.16
1359 2870 5.181811 CGATACGTATAGGACAACCATACCA 59.818 44.000 8.34 0.00 38.94 3.25
1360 2871 5.392380 CCGATACGTATAGGACAACCATACC 60.392 48.000 25.57 0.58 38.94 2.73
1361 2872 5.412594 TCCGATACGTATAGGACAACCATAC 59.587 44.000 27.53 3.17 38.94 2.39
1362 2873 5.559770 TCCGATACGTATAGGACAACCATA 58.440 41.667 27.53 8.47 38.94 2.74
1363 2874 4.401022 TCCGATACGTATAGGACAACCAT 58.599 43.478 27.53 0.00 38.94 3.55
1364 2875 3.819368 TCCGATACGTATAGGACAACCA 58.181 45.455 27.53 9.75 38.94 3.67
1365 2876 4.436584 CGATCCGATACGTATAGGACAACC 60.437 50.000 31.79 21.29 39.72 3.77
1366 2877 4.153117 ACGATCCGATACGTATAGGACAAC 59.847 45.833 31.79 24.31 39.72 3.32
1367 2878 4.318332 ACGATCCGATACGTATAGGACAA 58.682 43.478 31.79 16.01 39.72 3.18
1368 2879 3.928992 GACGATCCGATACGTATAGGACA 59.071 47.826 31.79 16.65 39.72 4.02
1377 2888 2.608546 GGAGATAGGACGATCCGATACG 59.391 54.545 0.00 0.00 42.75 3.06
1381 2892 3.263681 ACATAGGAGATAGGACGATCCGA 59.736 47.826 0.00 0.00 42.75 4.55
1382 2893 3.375610 CACATAGGAGATAGGACGATCCG 59.624 52.174 0.00 0.00 42.75 4.18
1387 2902 4.215827 GGTACACACATAGGAGATAGGACG 59.784 50.000 0.00 0.00 0.00 4.79
1392 2907 6.629515 GCACTTTGGTACACACATAGGAGATA 60.630 42.308 0.00 0.00 39.29 1.98
1394 2909 4.562757 GCACTTTGGTACACACATAGGAGA 60.563 45.833 0.00 0.00 39.29 3.71
1395 2910 3.684788 GCACTTTGGTACACACATAGGAG 59.315 47.826 0.00 0.00 39.29 3.69
1426 2941 9.472361 GGAAAACTCGCTACAGATTATTGTATA 57.528 33.333 0.00 0.00 33.38 1.47
1427 2942 7.441458 GGGAAAACTCGCTACAGATTATTGTAT 59.559 37.037 0.00 0.00 33.38 2.29
1428 2943 6.759827 GGGAAAACTCGCTACAGATTATTGTA 59.240 38.462 0.00 0.00 32.56 2.41
1429 2944 5.585047 GGGAAAACTCGCTACAGATTATTGT 59.415 40.000 0.00 0.00 35.09 2.71
1430 2945 5.276868 CGGGAAAACTCGCTACAGATTATTG 60.277 44.000 0.00 0.00 0.00 1.90
1431 2946 4.809426 CGGGAAAACTCGCTACAGATTATT 59.191 41.667 0.00 0.00 0.00 1.40
1432 2947 4.369182 CGGGAAAACTCGCTACAGATTAT 58.631 43.478 0.00 0.00 0.00 1.28
1434 2949 2.618053 CGGGAAAACTCGCTACAGATT 58.382 47.619 0.00 0.00 0.00 2.40
1435 2950 1.134788 CCGGGAAAACTCGCTACAGAT 60.135 52.381 0.00 0.00 0.00 2.90
1436 2951 0.245539 CCGGGAAAACTCGCTACAGA 59.754 55.000 0.00 0.00 0.00 3.41
1437 2952 0.037605 ACCGGGAAAACTCGCTACAG 60.038 55.000 6.32 0.00 0.00 2.74
1439 2954 0.037975 TCACCGGGAAAACTCGCTAC 60.038 55.000 6.32 0.00 0.00 3.58
1440 2955 0.680618 TTCACCGGGAAAACTCGCTA 59.319 50.000 6.32 0.00 30.98 4.26
1443 2958 2.094762 ATCTTCACCGGGAAAACTCG 57.905 50.000 6.32 0.00 34.44 4.18
1444 2959 4.546570 CAAAATCTTCACCGGGAAAACTC 58.453 43.478 6.32 0.00 34.44 3.01
1446 2961 3.057019 GCAAAATCTTCACCGGGAAAAC 58.943 45.455 6.32 0.00 34.44 2.43
1447 2962 2.695666 TGCAAAATCTTCACCGGGAAAA 59.304 40.909 6.32 0.00 34.44 2.29
1449 2964 1.988293 TGCAAAATCTTCACCGGGAA 58.012 45.000 6.32 5.76 0.00 3.97
1450 2965 2.214376 ATGCAAAATCTTCACCGGGA 57.786 45.000 6.32 0.00 0.00 5.14
1451 2966 2.230992 TCAATGCAAAATCTTCACCGGG 59.769 45.455 6.32 0.00 0.00 5.73
1452 2967 3.244976 GTCAATGCAAAATCTTCACCGG 58.755 45.455 0.00 0.00 0.00 5.28
1453 2968 3.899734 TGTCAATGCAAAATCTTCACCG 58.100 40.909 0.00 0.00 0.00 4.94
1454 2969 5.531634 TCTTGTCAATGCAAAATCTTCACC 58.468 37.500 0.00 0.00 0.00 4.02
1457 2972 7.507304 CAACATCTTGTCAATGCAAAATCTTC 58.493 34.615 0.00 0.00 0.00 2.87
1458 2973 6.073440 GCAACATCTTGTCAATGCAAAATCTT 60.073 34.615 0.00 0.00 33.25 2.40
1464 2979 2.607526 CGGCAACATCTTGTCAATGCAA 60.608 45.455 9.63 0.00 34.33 4.08
1465 2980 1.068402 CGGCAACATCTTGTCAATGCA 60.068 47.619 9.63 0.00 34.33 3.96
1466 2981 1.068333 ACGGCAACATCTTGTCAATGC 60.068 47.619 0.33 0.33 32.49 3.56
1467 2982 2.226200 TGACGGCAACATCTTGTCAATG 59.774 45.455 0.00 0.00 36.69 2.82
1468 2983 2.503331 TGACGGCAACATCTTGTCAAT 58.497 42.857 0.00 0.00 36.69 2.57
1469 2984 1.960417 TGACGGCAACATCTTGTCAA 58.040 45.000 0.00 0.00 36.69 3.18
1470 2985 1.872952 CTTGACGGCAACATCTTGTCA 59.127 47.619 0.00 0.00 37.76 3.58
1472 2987 1.967319 ACTTGACGGCAACATCTTGT 58.033 45.000 0.00 0.00 0.00 3.16
1473 2988 2.662791 CGAACTTGACGGCAACATCTTG 60.663 50.000 0.00 0.00 0.00 3.02
1474 2989 1.531149 CGAACTTGACGGCAACATCTT 59.469 47.619 0.00 0.00 0.00 2.40
1476 2991 0.452784 GCGAACTTGACGGCAACATC 60.453 55.000 0.00 0.00 0.00 3.06
1477 2992 1.163420 TGCGAACTTGACGGCAACAT 61.163 50.000 0.00 0.00 0.00 2.71
1478 2993 1.815840 TGCGAACTTGACGGCAACA 60.816 52.632 0.00 0.00 0.00 3.33
1479 2994 1.368850 GTGCGAACTTGACGGCAAC 60.369 57.895 0.00 0.00 0.00 4.17
1480 2995 2.876879 CGTGCGAACTTGACGGCAA 61.877 57.895 2.36 2.36 0.00 4.52
1481 2996 2.680693 TACGTGCGAACTTGACGGCA 62.681 55.000 0.00 0.00 37.42 5.69
1484 2999 1.121967 GACTTACGTGCGAACTTGACG 59.878 52.381 0.00 0.00 39.03 4.35
1485 3000 2.121786 TGACTTACGTGCGAACTTGAC 58.878 47.619 0.00 0.00 0.00 3.18
1486 3001 2.495409 TGACTTACGTGCGAACTTGA 57.505 45.000 0.00 0.00 0.00 3.02
1487 3002 3.788434 ATTGACTTACGTGCGAACTTG 57.212 42.857 0.00 0.00 0.00 3.16
1489 3004 4.731961 CGTATATTGACTTACGTGCGAACT 59.268 41.667 0.00 0.00 37.13 3.01
1490 3005 4.974773 CGTATATTGACTTACGTGCGAAC 58.025 43.478 0.00 0.00 37.13 3.95
1497 3012 4.317839 GCTGGCAACGTATATTGACTTACG 60.318 45.833 0.00 1.33 45.02 3.18
1499 3014 4.124238 GGCTGGCAACGTATATTGACTTA 58.876 43.478 0.00 0.00 38.52 2.24
1500 3015 2.943033 GGCTGGCAACGTATATTGACTT 59.057 45.455 0.00 0.00 38.52 3.01
1501 3016 2.561569 GGCTGGCAACGTATATTGACT 58.438 47.619 0.00 0.00 38.52 3.41
1502 3017 1.260561 CGGCTGGCAACGTATATTGAC 59.739 52.381 1.08 0.00 38.17 3.18
1504 3019 0.041312 GCGGCTGGCAACGTATATTG 60.041 55.000 11.99 0.00 42.87 1.90
1516 3071 0.890683 ATTTCCTTTTCTGCGGCTGG 59.109 50.000 7.03 0.00 0.00 4.85
1517 3072 1.815003 AGATTTCCTTTTCTGCGGCTG 59.185 47.619 0.00 0.00 0.00 4.85
1529 3084 4.104383 ACCAACACACATCAGATTTCCT 57.896 40.909 0.00 0.00 0.00 3.36
1535 3090 5.529430 ACGAAATTTACCAACACACATCAGA 59.471 36.000 0.00 0.00 0.00 3.27
1537 3092 5.506483 CCACGAAATTTACCAACACACATCA 60.506 40.000 0.00 0.00 0.00 3.07
1539 3094 4.339814 ACCACGAAATTTACCAACACACAT 59.660 37.500 0.00 0.00 0.00 3.21
1543 3098 7.933728 AATTTACCACGAAATTTACCAACAC 57.066 32.000 0.00 0.00 35.90 3.32
1544 3099 8.627403 TGTAATTTACCACGAAATTTACCAACA 58.373 29.630 4.17 0.00 39.27 3.33
1556 3111 4.026293 TCGCGTATGTAATTTACCACGA 57.974 40.909 23.82 14.27 37.94 4.35
1573 3128 2.809446 TGGACTTCTTGTATCATCGCG 58.191 47.619 0.00 0.00 0.00 5.87
1581 3164 5.049267 GCCACGTAAATTTGGACTTCTTGTA 60.049 40.000 0.00 0.00 34.46 2.41
1590 3173 5.635700 GCTTAATTTGCCACGTAAATTTGGA 59.364 36.000 11.60 1.20 38.41 3.53
1591 3174 5.853081 GCTTAATTTGCCACGTAAATTTGG 58.147 37.500 11.60 7.34 38.41 3.28
1615 3198 1.557443 GCTGGGATTAACGCCGATCG 61.557 60.000 8.51 8.51 45.38 3.69
1665 3252 4.854361 ACACGTCCGAGCGTATATATAG 57.146 45.455 4.10 0.00 43.83 1.31
1666 3253 5.277011 GCATACACGTCCGAGCGTATATATA 60.277 44.000 4.10 0.00 43.83 0.86
1667 3254 4.495349 GCATACACGTCCGAGCGTATATAT 60.495 45.833 4.10 0.00 43.83 0.86
1668 3255 3.181517 GCATACACGTCCGAGCGTATATA 60.182 47.826 4.10 0.00 43.83 0.86
1673 3260 2.202570 GCATACACGTCCGAGCGT 60.203 61.111 0.00 0.00 46.88 5.07
1691 3278 4.985409 AGTGTAGTAGTAGATACGTACGCC 59.015 45.833 16.72 4.93 39.55 5.68
1714 3301 9.780186 CCTGAGATGATAGACCGTGTATATATA 57.220 37.037 0.00 0.00 0.00 0.86
1715 3302 7.721842 CCCTGAGATGATAGACCGTGTATATAT 59.278 40.741 0.00 0.00 0.00 0.86
1716 3303 7.054751 CCCTGAGATGATAGACCGTGTATATA 58.945 42.308 0.00 0.00 0.00 0.86
1717 3304 5.888724 CCCTGAGATGATAGACCGTGTATAT 59.111 44.000 0.00 0.00 0.00 0.86
1718 3305 5.254115 CCCTGAGATGATAGACCGTGTATA 58.746 45.833 0.00 0.00 0.00 1.47
1719 3306 4.082845 CCCTGAGATGATAGACCGTGTAT 58.917 47.826 0.00 0.00 0.00 2.29
1728 3315 2.426738 GAGATCGGCCCTGAGATGATAG 59.573 54.545 0.00 0.00 0.00 2.08
1752 3366 1.337118 CTAGCCAGACCTGAGGATCC 58.663 60.000 4.99 2.48 0.00 3.36
1778 3392 4.445052 CGAACAGAAAGAAAATTGCATGCA 59.555 37.500 18.46 18.46 0.00 3.96
1779 3393 4.445385 ACGAACAGAAAGAAAATTGCATGC 59.555 37.500 11.82 11.82 0.00 4.06
1780 3394 6.636447 TGTACGAACAGAAAGAAAATTGCATG 59.364 34.615 0.00 0.00 0.00 4.06
1781 3395 6.636850 GTGTACGAACAGAAAGAAAATTGCAT 59.363 34.615 0.00 0.00 35.91 3.96
1782 3396 5.968848 GTGTACGAACAGAAAGAAAATTGCA 59.031 36.000 0.00 0.00 35.91 4.08
1783 3397 5.398416 GGTGTACGAACAGAAAGAAAATTGC 59.602 40.000 0.00 0.00 35.91 3.56
1784 3398 6.969669 GGTGTACGAACAGAAAGAAAATTG 57.030 37.500 0.00 0.00 35.91 2.32
1826 3440 5.105917 ACCAACAGGGAAATTTAATAGCACG 60.106 40.000 0.00 0.00 41.15 5.34
1837 3451 4.653801 AGCTGTAAAAACCAACAGGGAAAT 59.346 37.500 4.79 0.00 42.72 2.17
1841 3455 3.057526 GCTAGCTGTAAAAACCAACAGGG 60.058 47.826 7.70 0.00 42.72 4.45
1849 3463 2.242564 GCGCTTGCTAGCTGTAAAAAC 58.757 47.619 17.23 0.00 45.51 2.43
1871 3485 1.154413 GCAATCTCCAACACGCACG 60.154 57.895 0.00 0.00 0.00 5.34
1874 3488 0.593128 ACTTGCAATCTCCAACACGC 59.407 50.000 0.00 0.00 0.00 5.34
1888 3502 1.794437 CGAGCTCCTACGTACACTTGC 60.794 57.143 8.47 0.00 0.00 4.01
1898 3512 3.044280 GCTAGGCCGAGCTCCTAC 58.956 66.667 28.57 0.21 39.50 3.18
1966 3580 1.409412 CCACGACGTCTTCTTCAGTG 58.591 55.000 14.70 11.73 0.00 3.66
2012 3626 1.300963 GATCTTGAGCCCAGCCACA 59.699 57.895 0.00 0.00 0.00 4.17
2060 3674 2.098233 CCCGACGTGGTGGAATTCG 61.098 63.158 0.00 0.00 35.15 3.34
2085 3699 1.605457 CGTCATATGTACTGGCGGCAT 60.605 52.381 13.85 5.60 38.04 4.40
2090 3704 3.318017 GGTCATCGTCATATGTACTGGC 58.682 50.000 1.90 0.00 0.00 4.85
2093 3707 2.350484 CGCGGTCATCGTCATATGTACT 60.350 50.000 0.00 0.00 41.72 2.73
2095 3709 1.605232 ACGCGGTCATCGTCATATGTA 59.395 47.619 12.47 0.00 41.72 2.29
2096 3710 0.384309 ACGCGGTCATCGTCATATGT 59.616 50.000 12.47 0.00 41.72 2.29
2182 3796 0.107508 ATTCATGGACACAGGAGCGG 60.108 55.000 0.00 0.00 38.79 5.52
2183 3797 1.012086 CATTCATGGACACAGGAGCG 58.988 55.000 0.00 0.00 38.79 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.