Multiple sequence alignment - TraesCS6B01G105100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G105100 chr6B 100.000 4937 0 0 1 4937 84610088 84615024 0.000000e+00 9118.0
1 TraesCS6B01G105100 chr6B 87.834 337 29 5 1984 2308 708776255 708776591 7.750000e-103 385.0
2 TraesCS6B01G105100 chr6B 86.486 74 6 3 4710 4780 29801623 29801551 1.470000e-10 78.7
3 TraesCS6B01G105100 chrUn 90.117 1619 92 35 927 2515 153369248 153367668 0.000000e+00 2041.0
4 TraesCS6B01G105100 chrUn 90.795 1271 59 20 2506 3772 80237199 80238415 0.000000e+00 1646.0
5 TraesCS6B01G105100 chrUn 96.128 749 26 3 2506 3253 153367634 153366888 0.000000e+00 1219.0
6 TraesCS6B01G105100 chrUn 96.128 749 26 3 2506 3253 377993538 377994284 0.000000e+00 1219.0
7 TraesCS6B01G105100 chrUn 93.502 554 30 4 3777 4327 80238517 80239067 0.000000e+00 819.0
8 TraesCS6B01G105100 chrUn 93.502 554 30 4 3777 4327 448590826 448591376 0.000000e+00 819.0
9 TraesCS6B01G105100 chrUn 81.399 629 69 23 273 885 153370286 153369690 2.080000e-128 470.0
10 TraesCS6B01G105100 chrUn 89.916 357 12 6 2182 2515 80236810 80237165 5.870000e-119 438.0
11 TraesCS6B01G105100 chrUn 89.916 357 12 6 2182 2515 377993149 377993504 5.870000e-119 438.0
12 TraesCS6B01G105100 chrUn 87.919 298 33 1 4640 4937 464106580 464106874 1.020000e-91 348.0
13 TraesCS6B01G105100 chrUn 81.481 432 26 16 3343 3772 448590345 448590724 6.210000e-79 305.0
14 TraesCS6B01G105100 chrUn 95.050 101 4 1 4328 4427 464106297 464106397 1.840000e-34 158.0
15 TraesCS6B01G105100 chr6A 90.865 1445 74 27 1086 2515 48104006 48105407 0.000000e+00 1884.0
16 TraesCS6B01G105100 chr6A 91.941 1278 68 18 2506 3772 48105441 48106694 0.000000e+00 1757.0
17 TraesCS6B01G105100 chr6A 93.874 604 32 2 3777 4378 48106803 48107403 0.000000e+00 905.0
18 TraesCS6B01G105100 chr6A 94.294 333 18 1 4606 4937 48107494 48107826 4.410000e-140 508.0
19 TraesCS6B01G105100 chr6A 90.865 208 14 3 1194 1401 603768863 603768661 1.750000e-69 274.0
20 TraesCS6B01G105100 chr6A 88.095 210 25 0 1194 1403 394809214 394809005 2.950000e-62 250.0
21 TraesCS6B01G105100 chr6A 85.437 103 15 0 4442 4544 48107404 48107506 1.880000e-19 108.0
22 TraesCS6B01G105100 chr4A 91.104 326 28 1 1984 2308 555996867 555997192 1.630000e-119 440.0
23 TraesCS6B01G105100 chr4A 88.724 337 26 5 1984 2308 409229219 409229555 7.700000e-108 401.0
24 TraesCS6B01G105100 chr4A 91.787 207 17 0 1197 1403 723615655 723615449 6.250000e-74 289.0
25 TraesCS6B01G105100 chr1B 91.104 326 28 1 1984 2308 458106510 458106185 1.630000e-119 440.0
26 TraesCS6B01G105100 chr1B 100.000 31 0 0 4657 4687 103351233 103351263 1.920000e-04 58.4
27 TraesCS6B01G105100 chr7A 89.911 337 22 5 1984 2308 639934507 639934843 1.640000e-114 424.0
28 TraesCS6B01G105100 chr7A 89.021 337 24 6 1984 2308 2323876 2324211 5.950000e-109 405.0
29 TraesCS6B01G105100 chr1A 88.131 337 28 8 1984 2308 206113669 206114005 1.670000e-104 390.0
30 TraesCS6B01G105100 chr4B 94.030 201 11 1 1115 1315 645304688 645304489 2.230000e-78 303.0
31 TraesCS6B01G105100 chr5A 94.764 191 10 0 1122 1312 682927273 682927463 1.040000e-76 298.0
32 TraesCS6B01G105100 chr4D 94.241 191 11 0 1125 1315 501325463 501325273 4.830000e-75 292.0
33 TraesCS6B01G105100 chr4D 100.000 28 0 0 4659 4686 69129426 69129399 9.000000e-03 52.8
34 TraesCS6B01G105100 chr7B 90.476 210 18 1 1194 1403 748688474 748688681 4.870000e-70 276.0
35 TraesCS6B01G105100 chr7B 94.309 123 7 0 1281 1403 141620880 141621002 6.520000e-44 189.0
36 TraesCS6B01G105100 chr3B 91.579 190 11 3 2518 2706 65703980 65703795 1.760000e-64 257.0
37 TraesCS6B01G105100 chr3B 90.446 157 15 0 1247 1403 65705547 65705391 1.800000e-49 207.0
38 TraesCS6B01G105100 chr5B 89.831 59 5 1 4720 4777 523412902 523412960 1.910000e-09 75.0
39 TraesCS6B01G105100 chr5D 84.507 71 11 0 4720 4790 428510347 428510417 2.470000e-08 71.3
40 TraesCS6B01G105100 chr2D 97.059 34 1 0 4762 4795 650061849 650061882 1.920000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G105100 chr6B 84610088 84615024 4936 False 9118.000000 9118 100.000000 1 4937 1 chr6B.!!$F1 4936
1 TraesCS6B01G105100 chrUn 153366888 153370286 3398 True 1243.333333 2041 89.214667 273 3253 3 chrUn.!!$R1 2980
2 TraesCS6B01G105100 chrUn 80236810 80239067 2257 False 967.666667 1646 91.404333 2182 4327 3 chrUn.!!$F1 2145
3 TraesCS6B01G105100 chrUn 377993149 377994284 1135 False 828.500000 1219 93.022000 2182 3253 2 chrUn.!!$F2 1071
4 TraesCS6B01G105100 chrUn 448590345 448591376 1031 False 562.000000 819 87.491500 3343 4327 2 chrUn.!!$F3 984
5 TraesCS6B01G105100 chrUn 464106297 464106874 577 False 253.000000 348 91.484500 4328 4937 2 chrUn.!!$F4 609
6 TraesCS6B01G105100 chr6A 48104006 48107826 3820 False 1032.400000 1884 91.282200 1086 4937 5 chr6A.!!$F1 3851
7 TraesCS6B01G105100 chr3B 65703795 65705547 1752 True 232.000000 257 91.012500 1247 2706 2 chr3B.!!$R1 1459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.036732 TGGTGCCCACTCAGACATTC 59.963 55.000 0.00 0.0 0.00 2.67 F
1417 1841 0.038159 CTGACAGAGTGTTCGACCCC 60.038 60.000 0.00 0.0 0.00 4.95 F
1419 1843 0.038159 GACAGAGTGTTCGACCCCTG 60.038 60.000 0.00 0.0 33.92 4.45 F
1623 2259 0.387367 GACAGAAGCTTCGTCTGCGA 60.387 55.000 28.51 0.0 45.35 5.10 F
1817 2453 0.874175 TAGATCGCCGCACCAATTCG 60.874 55.000 0.00 0.0 0.00 3.34 F
2304 3426 1.204941 ACTGTTCGCTTATCGCCTTCT 59.795 47.619 0.00 0.0 38.27 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 2671 0.038166 TTCCAACTGCCATCTCCCAC 59.962 55.000 0.00 0.0 0.00 4.61 R
3173 4361 0.694771 ATCCTGCAGCAAACTCCTCA 59.305 50.000 8.66 0.0 0.00 3.86 R
3216 4404 4.104738 AGAAGATCAAGTCCCAAAGGTTCA 59.895 41.667 0.00 0.0 0.00 3.18 R
3560 4756 2.610374 TGGCAACTTCAGTTTGTACGAC 59.390 45.455 0.00 0.0 35.83 4.34 R
3561 4757 2.907634 TGGCAACTTCAGTTTGTACGA 58.092 42.857 0.00 0.0 35.83 3.43 R
4003 5303 0.034059 AGAAAGGAGCACACAGTCCG 59.966 55.000 0.00 0.0 37.97 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.655481 CGAAGTTGGTGCCCACTC 58.345 61.111 0.00 0.00 30.78 3.51
18 19 1.227823 CGAAGTTGGTGCCCACTCA 60.228 57.895 0.00 0.00 30.78 3.41
19 20 1.230635 CGAAGTTGGTGCCCACTCAG 61.231 60.000 0.00 0.00 30.78 3.35
20 21 0.108585 GAAGTTGGTGCCCACTCAGA 59.891 55.000 0.00 0.00 30.78 3.27
21 22 0.179018 AAGTTGGTGCCCACTCAGAC 60.179 55.000 0.00 0.00 30.78 3.51
22 23 1.148273 GTTGGTGCCCACTCAGACA 59.852 57.895 0.00 0.00 30.78 3.41
23 24 0.250901 GTTGGTGCCCACTCAGACAT 60.251 55.000 0.00 0.00 30.78 3.06
24 25 0.478072 TTGGTGCCCACTCAGACATT 59.522 50.000 0.00 0.00 30.78 2.71
25 26 0.036732 TGGTGCCCACTCAGACATTC 59.963 55.000 0.00 0.00 0.00 2.67
26 27 0.036732 GGTGCCCACTCAGACATTCA 59.963 55.000 0.00 0.00 0.00 2.57
27 28 1.545428 GGTGCCCACTCAGACATTCAA 60.545 52.381 0.00 0.00 0.00 2.69
28 29 1.808945 GTGCCCACTCAGACATTCAAG 59.191 52.381 0.00 0.00 0.00 3.02
29 30 1.421268 TGCCCACTCAGACATTCAAGT 59.579 47.619 0.00 0.00 0.00 3.16
30 31 2.079925 GCCCACTCAGACATTCAAGTC 58.920 52.381 0.00 0.00 38.81 3.01
31 32 2.341257 CCCACTCAGACATTCAAGTCG 58.659 52.381 0.00 0.00 43.24 4.18
32 33 1.728971 CCACTCAGACATTCAAGTCGC 59.271 52.381 0.00 0.00 43.24 5.19
33 34 2.407090 CACTCAGACATTCAAGTCGCA 58.593 47.619 0.00 0.00 43.24 5.10
34 35 2.802247 CACTCAGACATTCAAGTCGCAA 59.198 45.455 0.00 0.00 43.24 4.85
35 36 2.802816 ACTCAGACATTCAAGTCGCAAC 59.197 45.455 0.00 0.00 43.24 4.17
36 37 2.143122 TCAGACATTCAAGTCGCAACC 58.857 47.619 0.00 0.00 43.24 3.77
37 38 1.136252 CAGACATTCAAGTCGCAACCG 60.136 52.381 0.00 0.00 43.24 4.44
38 39 0.165944 GACATTCAAGTCGCAACCGG 59.834 55.000 0.00 0.00 34.56 5.28
39 40 0.250124 ACATTCAAGTCGCAACCGGA 60.250 50.000 9.46 0.00 34.56 5.14
40 41 0.443869 CATTCAAGTCGCAACCGGAG 59.556 55.000 9.46 0.15 34.56 4.63
41 42 0.320374 ATTCAAGTCGCAACCGGAGA 59.680 50.000 9.46 0.00 34.56 3.71
42 43 0.319555 TTCAAGTCGCAACCGGAGAG 60.320 55.000 9.46 1.55 34.56 3.20
44 45 3.591254 AAGTCGCAACCGGAGAGGC 62.591 63.158 9.46 3.22 46.52 4.70
45 46 4.373116 GTCGCAACCGGAGAGGCA 62.373 66.667 9.46 0.00 46.52 4.75
46 47 3.621805 TCGCAACCGGAGAGGCAA 61.622 61.111 9.46 0.00 46.52 4.52
47 48 2.668212 CGCAACCGGAGAGGCAAA 60.668 61.111 9.46 0.00 46.52 3.68
48 49 2.258013 CGCAACCGGAGAGGCAAAA 61.258 57.895 9.46 0.00 46.52 2.44
49 50 1.285950 GCAACCGGAGAGGCAAAAC 59.714 57.895 9.46 0.00 46.52 2.43
50 51 1.574428 CAACCGGAGAGGCAAAACG 59.426 57.895 9.46 0.00 46.52 3.60
52 53 2.746277 CCGGAGAGGCAAAACGGG 60.746 66.667 0.00 0.00 40.79 5.28
53 54 3.431725 CGGAGAGGCAAAACGGGC 61.432 66.667 0.00 0.00 0.00 6.13
59 60 3.206374 GGCAAAACGGGCCCTATG 58.794 61.111 22.43 14.02 45.87 2.23
60 61 1.379309 GGCAAAACGGGCCCTATGA 60.379 57.895 22.43 0.00 45.87 2.15
61 62 0.755327 GGCAAAACGGGCCCTATGAT 60.755 55.000 22.43 0.00 45.87 2.45
62 63 0.385390 GCAAAACGGGCCCTATGATG 59.615 55.000 22.43 13.28 0.00 3.07
63 64 0.385390 CAAAACGGGCCCTATGATGC 59.615 55.000 22.43 0.00 0.00 3.91
64 65 0.258774 AAAACGGGCCCTATGATGCT 59.741 50.000 22.43 0.00 0.00 3.79
65 66 0.258774 AAACGGGCCCTATGATGCTT 59.741 50.000 22.43 0.00 0.00 3.91
66 67 0.179018 AACGGGCCCTATGATGCTTC 60.179 55.000 22.43 0.00 0.00 3.86
67 68 1.302832 CGGGCCCTATGATGCTTCC 60.303 63.158 22.43 0.00 0.00 3.46
68 69 1.846261 GGGCCCTATGATGCTTCCA 59.154 57.895 17.04 0.00 0.00 3.53
69 70 0.251077 GGGCCCTATGATGCTTCCAG 60.251 60.000 17.04 0.00 0.00 3.86
70 71 0.251077 GGCCCTATGATGCTTCCAGG 60.251 60.000 0.00 9.31 0.00 4.45
71 72 0.892814 GCCCTATGATGCTTCCAGGC 60.893 60.000 10.36 7.39 0.00 4.85
72 73 0.769873 CCCTATGATGCTTCCAGGCT 59.230 55.000 10.36 0.00 0.00 4.58
73 74 1.544982 CCCTATGATGCTTCCAGGCTG 60.545 57.143 7.75 7.75 0.00 4.85
74 75 1.544982 CCTATGATGCTTCCAGGCTGG 60.545 57.143 28.01 28.01 39.43 4.85
75 76 1.419012 CTATGATGCTTCCAGGCTGGA 59.581 52.381 32.01 32.01 46.61 3.86
106 107 5.490139 CTATCCAAGCAGGTGTTACAATG 57.510 43.478 0.00 0.00 39.02 2.82
107 108 1.885887 TCCAAGCAGGTGTTACAATGC 59.114 47.619 13.77 13.77 39.02 3.56
108 109 1.067635 CCAAGCAGGTGTTACAATGCC 60.068 52.381 16.80 1.79 39.51 4.40
109 110 0.881118 AAGCAGGTGTTACAATGCCG 59.119 50.000 16.80 0.79 39.51 5.69
110 111 0.960364 AGCAGGTGTTACAATGCCGG 60.960 55.000 16.80 0.00 39.51 6.13
111 112 1.506262 CAGGTGTTACAATGCCGGC 59.494 57.895 22.73 22.73 0.00 6.13
112 113 1.677633 AGGTGTTACAATGCCGGCC 60.678 57.895 26.77 6.84 0.00 6.13
113 114 1.974343 GGTGTTACAATGCCGGCCA 60.974 57.895 26.77 12.96 0.00 5.36
114 115 1.506262 GTGTTACAATGCCGGCCAG 59.494 57.895 26.77 16.30 0.00 4.85
115 116 0.958382 GTGTTACAATGCCGGCCAGA 60.958 55.000 26.77 5.45 0.00 3.86
116 117 0.250945 TGTTACAATGCCGGCCAGAA 60.251 50.000 26.77 4.98 0.00 3.02
117 118 0.885196 GTTACAATGCCGGCCAGAAA 59.115 50.000 26.77 4.49 0.00 2.52
118 119 1.271102 GTTACAATGCCGGCCAGAAAA 59.729 47.619 26.77 10.37 0.00 2.29
119 120 0.885196 TACAATGCCGGCCAGAAAAC 59.115 50.000 26.77 0.00 0.00 2.43
120 121 1.079888 CAATGCCGGCCAGAAAACC 60.080 57.895 26.77 0.00 0.00 3.27
121 122 1.228862 AATGCCGGCCAGAAAACCT 60.229 52.632 26.77 0.00 0.00 3.50
122 123 0.039035 AATGCCGGCCAGAAAACCTA 59.961 50.000 26.77 0.00 0.00 3.08
123 124 0.039035 ATGCCGGCCAGAAAACCTAA 59.961 50.000 26.77 0.00 0.00 2.69
124 125 0.039035 TGCCGGCCAGAAAACCTAAT 59.961 50.000 26.77 0.00 0.00 1.73
125 126 0.455815 GCCGGCCAGAAAACCTAATG 59.544 55.000 18.11 0.00 0.00 1.90
126 127 1.953311 GCCGGCCAGAAAACCTAATGA 60.953 52.381 18.11 0.00 0.00 2.57
127 128 2.442413 CCGGCCAGAAAACCTAATGAA 58.558 47.619 2.24 0.00 0.00 2.57
128 129 2.163613 CCGGCCAGAAAACCTAATGAAC 59.836 50.000 2.24 0.00 0.00 3.18
129 130 2.817258 CGGCCAGAAAACCTAATGAACA 59.183 45.455 2.24 0.00 0.00 3.18
130 131 3.443681 CGGCCAGAAAACCTAATGAACAT 59.556 43.478 2.24 0.00 0.00 2.71
131 132 4.638421 CGGCCAGAAAACCTAATGAACATA 59.362 41.667 2.24 0.00 0.00 2.29
132 133 5.299279 CGGCCAGAAAACCTAATGAACATAT 59.701 40.000 2.24 0.00 0.00 1.78
133 134 6.507023 GGCCAGAAAACCTAATGAACATATG 58.493 40.000 0.00 0.00 0.00 1.78
134 135 6.321181 GGCCAGAAAACCTAATGAACATATGA 59.679 38.462 10.38 0.00 0.00 2.15
135 136 7.196331 GCCAGAAAACCTAATGAACATATGAC 58.804 38.462 10.38 3.82 0.00 3.06
136 137 7.148086 GCCAGAAAACCTAATGAACATATGACA 60.148 37.037 10.38 9.54 0.00 3.58
137 138 8.739039 CCAGAAAACCTAATGAACATATGACAA 58.261 33.333 10.38 0.00 0.00 3.18
142 143 9.466497 AAACCTAATGAACATATGACAATCACT 57.534 29.630 10.38 1.31 0.00 3.41
144 145 9.770097 ACCTAATGAACATATGACAATCACTAG 57.230 33.333 10.38 10.71 0.00 2.57
145 146 9.987272 CCTAATGAACATATGACAATCACTAGA 57.013 33.333 10.38 0.00 0.00 2.43
149 150 8.185003 TGAACATATGACAATCACTAGAAACG 57.815 34.615 10.38 0.00 0.00 3.60
150 151 8.032451 TGAACATATGACAATCACTAGAAACGA 58.968 33.333 10.38 0.00 0.00 3.85
151 152 7.993821 ACATATGACAATCACTAGAAACGAG 57.006 36.000 10.38 0.00 0.00 4.18
152 153 7.772166 ACATATGACAATCACTAGAAACGAGA 58.228 34.615 10.38 0.00 0.00 4.04
153 154 8.417106 ACATATGACAATCACTAGAAACGAGAT 58.583 33.333 10.38 0.00 0.00 2.75
154 155 9.254133 CATATGACAATCACTAGAAACGAGATT 57.746 33.333 0.00 0.00 0.00 2.40
155 156 9.823647 ATATGACAATCACTAGAAACGAGATTT 57.176 29.630 0.00 0.00 0.00 2.17
156 157 7.962964 TGACAATCACTAGAAACGAGATTTT 57.037 32.000 0.00 0.00 0.00 1.82
157 158 8.018677 TGACAATCACTAGAAACGAGATTTTC 57.981 34.615 0.00 0.00 35.97 2.29
158 159 7.872993 TGACAATCACTAGAAACGAGATTTTCT 59.127 33.333 0.00 4.43 45.73 2.52
159 160 9.355215 GACAATCACTAGAAACGAGATTTTCTA 57.645 33.333 0.00 5.99 42.79 2.10
160 161 9.141400 ACAATCACTAGAAACGAGATTTTCTAC 57.859 33.333 0.00 0.00 42.79 2.59
161 162 7.972623 ATCACTAGAAACGAGATTTTCTACG 57.027 36.000 0.00 0.00 42.79 3.51
162 163 7.137490 TCACTAGAAACGAGATTTTCTACGA 57.863 36.000 0.00 1.31 42.79 3.43
163 164 7.759465 TCACTAGAAACGAGATTTTCTACGAT 58.241 34.615 0.00 0.00 42.79 3.73
164 165 7.909121 TCACTAGAAACGAGATTTTCTACGATC 59.091 37.037 0.00 0.00 42.79 3.69
165 166 7.166142 CACTAGAAACGAGATTTTCTACGATCC 59.834 40.741 0.00 0.00 42.79 3.36
166 167 5.962433 AGAAACGAGATTTTCTACGATCCA 58.038 37.500 0.00 0.00 42.79 3.41
167 168 5.805994 AGAAACGAGATTTTCTACGATCCAC 59.194 40.000 0.00 0.00 42.79 4.02
168 169 4.713824 ACGAGATTTTCTACGATCCACA 57.286 40.909 0.00 0.00 0.00 4.17
169 170 5.263968 ACGAGATTTTCTACGATCCACAT 57.736 39.130 0.00 0.00 0.00 3.21
170 171 5.282510 ACGAGATTTTCTACGATCCACATC 58.717 41.667 0.00 0.00 0.00 3.06
171 172 5.067936 ACGAGATTTTCTACGATCCACATCT 59.932 40.000 0.00 0.00 0.00 2.90
172 173 5.400782 CGAGATTTTCTACGATCCACATCTG 59.599 44.000 0.00 0.00 0.00 2.90
173 174 6.471233 AGATTTTCTACGATCCACATCTGA 57.529 37.500 0.00 0.00 0.00 3.27
174 175 6.878317 AGATTTTCTACGATCCACATCTGAA 58.122 36.000 0.00 0.00 0.00 3.02
175 176 7.504403 AGATTTTCTACGATCCACATCTGAAT 58.496 34.615 0.00 0.00 0.00 2.57
176 177 6.908870 TTTTCTACGATCCACATCTGAATG 57.091 37.500 0.00 0.00 38.93 2.67
178 179 6.709018 TTCTACGATCCACATCTGAATGTA 57.291 37.500 0.00 0.00 44.41 2.29
179 180 6.901081 TCTACGATCCACATCTGAATGTAT 57.099 37.500 0.00 0.00 44.41 2.29
180 181 6.914259 TCTACGATCCACATCTGAATGTATC 58.086 40.000 0.00 0.00 44.41 2.24
181 182 5.535753 ACGATCCACATCTGAATGTATCA 57.464 39.130 0.00 0.00 44.41 2.15
182 183 5.917462 ACGATCCACATCTGAATGTATCAA 58.083 37.500 0.00 0.00 44.41 2.57
183 184 6.528321 ACGATCCACATCTGAATGTATCAAT 58.472 36.000 0.00 0.00 44.41 2.57
184 185 6.648310 ACGATCCACATCTGAATGTATCAATC 59.352 38.462 0.00 0.00 44.41 2.67
185 186 6.091849 CGATCCACATCTGAATGTATCAATCC 59.908 42.308 0.00 0.00 44.41 3.01
186 187 6.251255 TCCACATCTGAATGTATCAATCCA 57.749 37.500 0.00 0.00 44.41 3.41
187 188 6.661777 TCCACATCTGAATGTATCAATCCAA 58.338 36.000 0.00 0.00 44.41 3.53
188 189 6.543465 TCCACATCTGAATGTATCAATCCAAC 59.457 38.462 0.00 0.00 44.41 3.77
189 190 6.424683 CACATCTGAATGTATCAATCCAACG 58.575 40.000 0.00 0.00 44.41 4.10
190 191 5.528690 ACATCTGAATGTATCAATCCAACGG 59.471 40.000 0.00 0.00 44.38 4.44
191 192 5.097742 TCTGAATGTATCAATCCAACGGT 57.902 39.130 0.00 0.00 37.67 4.83
192 193 5.116180 TCTGAATGTATCAATCCAACGGTC 58.884 41.667 0.00 0.00 37.67 4.79
193 194 4.837972 TGAATGTATCAATCCAACGGTCA 58.162 39.130 0.00 0.00 34.30 4.02
194 195 4.875536 TGAATGTATCAATCCAACGGTCAG 59.124 41.667 0.00 0.00 34.30 3.51
195 196 3.260475 TGTATCAATCCAACGGTCAGG 57.740 47.619 0.00 0.00 0.00 3.86
196 197 2.835156 TGTATCAATCCAACGGTCAGGA 59.165 45.455 4.95 4.95 38.50 3.86
197 198 3.454447 TGTATCAATCCAACGGTCAGGAT 59.546 43.478 8.73 8.73 46.33 3.24
200 201 3.175133 ATCCAACGGTCAGGATTGC 57.825 52.632 8.73 0.00 41.80 3.56
201 202 0.394352 ATCCAACGGTCAGGATTGCC 60.394 55.000 8.73 0.00 41.80 4.52
202 203 2.046285 CCAACGGTCAGGATTGCCC 61.046 63.158 0.00 0.00 33.31 5.36
210 211 2.036256 AGGATTGCCCTGTGGTGC 59.964 61.111 0.00 0.00 45.61 5.01
211 212 2.283101 GGATTGCCCTGTGGTGCA 60.283 61.111 0.00 0.00 35.27 4.57
214 215 2.521465 TTGCCCTGTGGTGCAAGG 60.521 61.111 0.00 0.00 42.19 3.61
215 216 4.601794 TGCCCTGTGGTGCAAGGG 62.602 66.667 15.84 15.84 44.20 3.95
226 227 3.904479 GCAAGGGGCGCCATTAGC 61.904 66.667 30.85 22.18 38.52 3.09
227 228 2.440065 CAAGGGGCGCCATTAGCA 60.440 61.111 30.85 0.00 44.04 3.49
228 229 1.829533 CAAGGGGCGCCATTAGCAT 60.830 57.895 30.85 4.54 44.04 3.79
229 230 0.537143 CAAGGGGCGCCATTAGCATA 60.537 55.000 30.85 0.00 44.04 3.14
230 231 0.250901 AAGGGGCGCCATTAGCATAG 60.251 55.000 30.85 0.00 44.04 2.23
231 232 2.335712 GGGGCGCCATTAGCATAGC 61.336 63.158 30.85 6.06 44.04 2.97
235 236 3.734683 CGCCATTAGCATAGCGTTG 57.265 52.632 0.00 0.00 44.04 4.10
236 237 1.217001 CGCCATTAGCATAGCGTTGA 58.783 50.000 0.00 0.00 44.04 3.18
237 238 1.070577 CGCCATTAGCATAGCGTTGAC 60.071 52.381 0.00 0.00 44.04 3.18
238 239 1.264288 GCCATTAGCATAGCGTTGACC 59.736 52.381 0.00 0.00 42.97 4.02
239 240 2.838736 CCATTAGCATAGCGTTGACCT 58.161 47.619 0.00 0.00 0.00 3.85
240 241 3.206150 CCATTAGCATAGCGTTGACCTT 58.794 45.455 0.00 0.00 0.00 3.50
241 242 3.627577 CCATTAGCATAGCGTTGACCTTT 59.372 43.478 0.00 0.00 0.00 3.11
242 243 4.814234 CCATTAGCATAGCGTTGACCTTTA 59.186 41.667 0.00 0.00 0.00 1.85
243 244 5.470098 CCATTAGCATAGCGTTGACCTTTAT 59.530 40.000 0.00 0.00 0.00 1.40
244 245 5.984233 TTAGCATAGCGTTGACCTTTATG 57.016 39.130 0.00 0.00 0.00 1.90
245 246 4.137116 AGCATAGCGTTGACCTTTATGA 57.863 40.909 0.00 0.00 0.00 2.15
246 247 4.708177 AGCATAGCGTTGACCTTTATGAT 58.292 39.130 0.00 0.00 0.00 2.45
247 248 5.126067 AGCATAGCGTTGACCTTTATGATT 58.874 37.500 0.00 0.00 0.00 2.57
248 249 5.590259 AGCATAGCGTTGACCTTTATGATTT 59.410 36.000 0.00 0.00 0.00 2.17
249 250 6.765989 AGCATAGCGTTGACCTTTATGATTTA 59.234 34.615 0.00 0.00 0.00 1.40
250 251 7.445402 AGCATAGCGTTGACCTTTATGATTTAT 59.555 33.333 0.00 0.00 0.00 1.40
251 252 7.535258 GCATAGCGTTGACCTTTATGATTTATG 59.465 37.037 0.00 0.00 0.00 1.90
252 253 8.559536 CATAGCGTTGACCTTTATGATTTATGT 58.440 33.333 0.00 0.00 0.00 2.29
253 254 9.772973 ATAGCGTTGACCTTTATGATTTATGTA 57.227 29.630 0.00 0.00 0.00 2.29
254 255 8.142994 AGCGTTGACCTTTATGATTTATGTAG 57.857 34.615 0.00 0.00 0.00 2.74
255 256 6.851330 GCGTTGACCTTTATGATTTATGTAGC 59.149 38.462 0.00 0.00 0.00 3.58
256 257 7.254795 GCGTTGACCTTTATGATTTATGTAGCT 60.255 37.037 0.00 0.00 0.00 3.32
257 258 8.612619 CGTTGACCTTTATGATTTATGTAGCTT 58.387 33.333 0.00 0.00 0.00 3.74
301 303 6.382859 AGTTTTCAGGGTAACTTGGTTTTCAT 59.617 34.615 0.00 0.00 45.31 2.57
335 337 0.882927 TAGCCAAACACGTCTGCCAC 60.883 55.000 0.00 0.00 0.00 5.01
368 370 5.278512 GGCTTGAAAGGCTAAATATAGGTGC 60.279 44.000 9.22 0.00 46.98 5.01
379 381 6.427242 GCTAAATATAGGTGCAAGGGAGTAAC 59.573 42.308 0.00 0.00 0.00 2.50
382 384 1.729586 AGGTGCAAGGGAGTAACTCA 58.270 50.000 0.00 0.00 31.08 3.41
387 389 2.230508 TGCAAGGGAGTAACTCACTACG 59.769 50.000 0.00 0.00 44.30 3.51
395 397 5.754890 GGGAGTAACTCACTACGAAACAAAA 59.245 40.000 0.00 0.00 39.27 2.44
436 438 8.278729 TCATGTAGTGCAATCAATAAACATCA 57.721 30.769 0.00 0.00 0.00 3.07
440 442 6.028146 AGTGCAATCAATAAACATCAAGCA 57.972 33.333 0.00 0.00 0.00 3.91
523 526 5.507077 GTCGCATTGTTTTTCTACTTCACA 58.493 37.500 0.00 0.00 0.00 3.58
530 533 5.305585 TGTTTTTCTACTTCACAGGCCTAG 58.694 41.667 3.98 0.56 0.00 3.02
532 535 2.231716 TCTACTTCACAGGCCTAGCA 57.768 50.000 3.98 0.00 0.00 3.49
534 537 1.827969 CTACTTCACAGGCCTAGCAGT 59.172 52.381 3.98 9.99 0.00 4.40
536 539 1.003355 TTCACAGGCCTAGCAGTGC 60.003 57.895 3.98 7.13 36.53 4.40
570 573 5.651387 TTTTCACCAAACTGTCATCAACA 57.349 34.783 0.00 0.00 36.18 3.33
571 574 5.651387 TTTCACCAAACTGTCATCAACAA 57.349 34.783 0.00 0.00 37.45 2.83
572 575 5.651387 TTCACCAAACTGTCATCAACAAA 57.349 34.783 0.00 0.00 37.45 2.83
573 576 4.992688 TCACCAAACTGTCATCAACAAAC 58.007 39.130 0.00 0.00 37.45 2.93
575 578 3.766591 ACCAAACTGTCATCAACAAACCA 59.233 39.130 0.00 0.00 37.45 3.67
576 579 4.221703 ACCAAACTGTCATCAACAAACCAA 59.778 37.500 0.00 0.00 37.45 3.67
577 580 5.104982 ACCAAACTGTCATCAACAAACCAAT 60.105 36.000 0.00 0.00 37.45 3.16
578 581 5.234757 CCAAACTGTCATCAACAAACCAATG 59.765 40.000 0.00 0.00 37.45 2.82
579 582 5.596836 AACTGTCATCAACAAACCAATGT 57.403 34.783 0.00 0.00 37.45 2.71
580 583 4.935702 ACTGTCATCAACAAACCAATGTG 58.064 39.130 0.00 0.00 37.45 3.21
581 584 4.402155 ACTGTCATCAACAAACCAATGTGT 59.598 37.500 0.00 0.00 37.45 3.72
582 585 5.105392 ACTGTCATCAACAAACCAATGTGTT 60.105 36.000 0.00 0.00 37.45 3.32
583 586 5.728471 TGTCATCAACAAACCAATGTGTTT 58.272 33.333 0.00 0.00 38.95 2.83
584 587 6.867550 TGTCATCAACAAACCAATGTGTTTA 58.132 32.000 0.81 0.00 36.33 2.01
585 588 7.495901 TGTCATCAACAAACCAATGTGTTTAT 58.504 30.769 0.81 0.00 36.33 1.40
586 589 8.633561 TGTCATCAACAAACCAATGTGTTTATA 58.366 29.630 0.81 0.00 36.33 0.98
587 590 9.638239 GTCATCAACAAACCAATGTGTTTATAT 57.362 29.630 0.81 0.00 36.33 0.86
627 630 7.995289 ACAATGAACTCATGAACAAACACTAA 58.005 30.769 0.00 0.00 36.56 2.24
677 684 5.358090 TGTACCACAAACTCAAACGTGATA 58.642 37.500 0.00 0.00 31.85 2.15
684 691 6.020995 CACAAACTCAAACGTGATAACCAAAC 60.021 38.462 0.00 0.00 31.85 2.93
700 707 8.888579 ATAACCAAACCTTAGTGATAGAATCG 57.111 34.615 0.00 0.00 0.00 3.34
701 708 5.116882 ACCAAACCTTAGTGATAGAATCGC 58.883 41.667 0.00 0.00 40.02 4.58
704 711 6.293081 CCAAACCTTAGTGATAGAATCGCATG 60.293 42.308 3.53 0.00 42.11 4.06
731 739 1.047801 ACAACCAAGATGCCAAACCC 58.952 50.000 0.00 0.00 0.00 4.11
732 740 0.321346 CAACCAAGATGCCAAACCCC 59.679 55.000 0.00 0.00 0.00 4.95
733 741 0.105246 AACCAAGATGCCAAACCCCA 60.105 50.000 0.00 0.00 0.00 4.96
734 742 0.542702 ACCAAGATGCCAAACCCCAG 60.543 55.000 0.00 0.00 0.00 4.45
741 749 1.337118 TGCCAAACCCCAGAATTCAC 58.663 50.000 8.44 0.00 0.00 3.18
743 751 1.273327 GCCAAACCCCAGAATTCACTG 59.727 52.381 8.44 0.00 37.61 3.66
766 774 3.461773 ACGGGCGGTCCATGAGAG 61.462 66.667 0.00 0.00 34.36 3.20
767 775 3.147595 CGGGCGGTCCATGAGAGA 61.148 66.667 0.00 0.00 34.36 3.10
768 776 2.721167 CGGGCGGTCCATGAGAGAA 61.721 63.158 0.00 0.00 34.36 2.87
769 777 1.153349 GGGCGGTCCATGAGAGAAC 60.153 63.158 0.00 0.00 35.00 3.01
770 778 1.153349 GGCGGTCCATGAGAGAACC 60.153 63.158 0.00 0.00 0.00 3.62
771 779 1.153349 GCGGTCCATGAGAGAACCC 60.153 63.158 0.00 0.00 0.00 4.11
772 780 1.899437 GCGGTCCATGAGAGAACCCA 61.899 60.000 0.00 0.00 0.00 4.51
773 781 0.108138 CGGTCCATGAGAGAACCCAC 60.108 60.000 0.00 0.00 0.00 4.61
774 782 0.108138 GGTCCATGAGAGAACCCACG 60.108 60.000 0.00 0.00 0.00 4.94
775 783 0.108138 GTCCATGAGAGAACCCACGG 60.108 60.000 0.00 0.00 0.00 4.94
806 825 0.179081 GGCCAGAGGGTATCACGAAC 60.179 60.000 0.00 0.00 36.17 3.95
838 857 3.063997 AGCGATTTAATTTCTGACAGCGG 59.936 43.478 0.00 0.00 0.00 5.52
866 885 0.251832 ACACACCACCACAAACCCAA 60.252 50.000 0.00 0.00 0.00 4.12
875 894 0.750249 CACAAACCCAACCCAACTCC 59.250 55.000 0.00 0.00 0.00 3.85
885 904 1.074951 CCCAACTCCCAAGTCCACC 59.925 63.158 0.00 0.00 33.48 4.61
886 905 1.715019 CCCAACTCCCAAGTCCACCA 61.715 60.000 0.00 0.00 33.48 4.17
887 906 0.537371 CCAACTCCCAAGTCCACCAC 60.537 60.000 0.00 0.00 33.48 4.16
888 907 0.537371 CAACTCCCAAGTCCACCACC 60.537 60.000 0.00 0.00 33.48 4.61
889 908 0.991355 AACTCCCAAGTCCACCACCA 60.991 55.000 0.00 0.00 33.48 4.17
890 909 1.073199 CTCCCAAGTCCACCACCAC 59.927 63.158 0.00 0.00 0.00 4.16
891 910 1.694525 TCCCAAGTCCACCACCACA 60.695 57.895 0.00 0.00 0.00 4.17
892 911 1.528309 CCCAAGTCCACCACCACAC 60.528 63.158 0.00 0.00 0.00 3.82
893 912 1.225983 CCAAGTCCACCACCACACA 59.774 57.895 0.00 0.00 0.00 3.72
894 913 1.101049 CCAAGTCCACCACCACACAC 61.101 60.000 0.00 0.00 0.00 3.82
895 914 0.107214 CAAGTCCACCACCACACACT 60.107 55.000 0.00 0.00 0.00 3.55
896 915 0.107214 AAGTCCACCACCACACACTG 60.107 55.000 0.00 0.00 0.00 3.66
897 916 2.186826 GTCCACCACCACACACTGC 61.187 63.158 0.00 0.00 0.00 4.40
898 917 2.906897 CCACCACCACACACTGCC 60.907 66.667 0.00 0.00 0.00 4.85
899 918 2.906897 CACCACCACACACTGCCC 60.907 66.667 0.00 0.00 0.00 5.36
900 919 3.096495 ACCACCACACACTGCCCT 61.096 61.111 0.00 0.00 0.00 5.19
901 920 2.281761 CCACCACACACTGCCCTC 60.282 66.667 0.00 0.00 0.00 4.30
902 921 2.281761 CACCACACACTGCCCTCC 60.282 66.667 0.00 0.00 0.00 4.30
903 922 3.570212 ACCACACACTGCCCTCCC 61.570 66.667 0.00 0.00 0.00 4.30
904 923 3.252284 CCACACACTGCCCTCCCT 61.252 66.667 0.00 0.00 0.00 4.20
905 924 2.348998 CACACACTGCCCTCCCTC 59.651 66.667 0.00 0.00 0.00 4.30
906 925 2.930562 ACACACTGCCCTCCCTCC 60.931 66.667 0.00 0.00 0.00 4.30
907 926 3.721706 CACACTGCCCTCCCTCCC 61.722 72.222 0.00 0.00 0.00 4.30
1061 1480 4.095400 TCCCTCCTGCCCCCTCTC 62.095 72.222 0.00 0.00 0.00 3.20
1112 1531 0.179189 GCCGTAATGTCAGCTTGTGC 60.179 55.000 0.00 0.00 40.05 4.57
1113 1532 0.447801 CCGTAATGTCAGCTTGTGCC 59.552 55.000 0.00 0.00 40.80 5.01
1121 1540 1.024271 TCAGCTTGTGCCTGTGTTTC 58.976 50.000 0.00 0.00 40.80 2.78
1226 1645 2.864931 CGCGCTCAAGAAGATCCGC 61.865 63.158 5.56 0.00 40.96 5.54
1328 1747 2.204803 AGGTACCCCTCCCCTCCT 60.205 66.667 8.74 0.00 35.62 3.69
1372 1796 0.039618 TCAGGGTTTGGGCTGGATTC 59.960 55.000 0.00 0.00 0.00 2.52
1403 1827 1.561769 AATGGATGGACCGGCTGACA 61.562 55.000 0.00 0.00 42.61 3.58
1417 1841 0.038159 CTGACAGAGTGTTCGACCCC 60.038 60.000 0.00 0.00 0.00 4.95
1419 1843 0.038159 GACAGAGTGTTCGACCCCTG 60.038 60.000 0.00 0.00 33.92 4.45
1420 1844 0.759436 ACAGAGTGTTCGACCCCTGT 60.759 55.000 0.00 0.00 35.37 4.00
1421 1845 0.393077 CAGAGTGTTCGACCCCTGTT 59.607 55.000 0.00 0.00 0.00 3.16
1422 1846 0.393077 AGAGTGTTCGACCCCTGTTG 59.607 55.000 0.00 0.00 0.00 3.33
1423 1847 1.227853 AGTGTTCGACCCCTGTTGC 60.228 57.895 0.00 0.00 0.00 4.17
1545 1976 2.234908 CTCCTCGGACTTCAAGAACCAT 59.765 50.000 0.00 0.00 0.00 3.55
1598 2150 5.240844 CCCTTTGATTTCGTTTACTTCCTGT 59.759 40.000 0.00 0.00 0.00 4.00
1617 2253 4.054780 TGTTTACTGACAGAAGCTTCGT 57.945 40.909 20.43 19.75 0.00 3.85
1618 2254 4.049186 TGTTTACTGACAGAAGCTTCGTC 58.951 43.478 28.81 28.81 34.04 4.20
1619 2255 4.202121 TGTTTACTGACAGAAGCTTCGTCT 60.202 41.667 31.91 22.96 34.32 4.18
1620 2256 2.430546 ACTGACAGAAGCTTCGTCTG 57.569 50.000 31.60 31.60 46.59 3.51
1621 2257 1.066914 CTGACAGAAGCTTCGTCTGC 58.933 55.000 31.91 19.13 45.35 4.26
1623 2259 0.387367 GACAGAAGCTTCGTCTGCGA 60.387 55.000 28.51 0.00 45.35 5.10
1633 2269 4.500116 GTCTGCGAGCGAGGGGAC 62.500 72.222 0.00 0.00 0.00 4.46
1635 2271 4.069232 CTGCGAGCGAGGGGACAA 62.069 66.667 0.00 0.00 0.00 3.18
1636 2272 4.373116 TGCGAGCGAGGGGACAAC 62.373 66.667 0.00 0.00 0.00 3.32
1637 2273 4.070552 GCGAGCGAGGGGACAACT 62.071 66.667 0.00 0.00 0.00 3.16
1638 2274 2.657237 CGAGCGAGGGGACAACTT 59.343 61.111 0.00 0.00 0.00 2.66
1639 2275 1.738099 CGAGCGAGGGGACAACTTG 60.738 63.158 0.00 0.00 0.00 3.16
1640 2276 2.032681 AGCGAGGGGACAACTTGC 59.967 61.111 0.00 0.00 44.06 4.01
1641 2277 3.423154 GCGAGGGGACAACTTGCG 61.423 66.667 0.00 0.00 35.79 4.85
1642 2278 2.030562 CGAGGGGACAACTTGCGT 59.969 61.111 0.00 0.00 0.00 5.24
1643 2279 2.317609 CGAGGGGACAACTTGCGTG 61.318 63.158 0.00 0.00 0.00 5.34
1644 2280 2.594592 AGGGGACAACTTGCGTGC 60.595 61.111 0.00 0.00 0.00 5.34
1645 2281 3.670377 GGGGACAACTTGCGTGCC 61.670 66.667 0.00 0.00 43.66 5.01
1646 2282 4.025401 GGGACAACTTGCGTGCCG 62.025 66.667 0.00 0.00 35.00 5.69
1647 2283 2.970324 GGACAACTTGCGTGCCGA 60.970 61.111 0.00 0.00 0.00 5.54
1648 2284 2.248431 GACAACTTGCGTGCCGAC 59.752 61.111 0.00 0.00 0.00 4.79
1817 2453 0.874175 TAGATCGCCGCACCAATTCG 60.874 55.000 0.00 0.00 0.00 3.34
1935 2661 7.332678 GTCGGTCTGGTACATTGTTATTTAAGT 59.667 37.037 0.00 0.00 38.20 2.24
1936 2662 7.546667 TCGGTCTGGTACATTGTTATTTAAGTC 59.453 37.037 0.00 0.00 38.20 3.01
1947 2673 8.946935 CATTGTTATTTAAGTCGCATGTATGTG 58.053 33.333 0.00 0.00 39.55 3.21
1950 2679 3.897141 TTAAGTCGCATGTATGTGGGA 57.103 42.857 5.66 0.00 38.75 4.37
1966 2695 1.358787 TGGGAGATGGCAGTTGGAAAT 59.641 47.619 0.00 0.00 0.00 2.17
1978 2796 4.681483 GCAGTTGGAAATTTGTTCTGCTAC 59.319 41.667 18.48 1.36 42.00 3.58
1986 3098 6.305638 GGAAATTTGTTCTGCTACGCTTTTAG 59.694 38.462 0.00 0.00 0.00 1.85
2045 3157 6.043706 CAGTGATACCTATCAATCCCTCCTTT 59.956 42.308 0.00 0.00 43.65 3.11
2064 3176 5.123820 TCCTTTATTTCAAGTCTGGAATGCG 59.876 40.000 0.00 0.00 32.63 4.73
2067 3179 3.896648 TTTCAAGTCTGGAATGCGTTC 57.103 42.857 10.34 10.34 0.00 3.95
2142 3254 7.665690 ACTACTATCTGTCTCATTTGGCTATG 58.334 38.462 0.00 0.00 0.00 2.23
2146 3258 6.939132 ATCTGTCTCATTTGGCTATGAAAG 57.061 37.500 4.81 3.88 34.32 2.62
2147 3259 5.809001 TCTGTCTCATTTGGCTATGAAAGT 58.191 37.500 4.81 0.00 34.32 2.66
2148 3260 5.645067 TCTGTCTCATTTGGCTATGAAAGTG 59.355 40.000 4.81 0.00 34.32 3.16
2149 3261 4.156556 TGTCTCATTTGGCTATGAAAGTGC 59.843 41.667 4.81 0.00 34.32 4.40
2217 3331 5.070981 TCAATCTGAGGTTGATATCTCCCAC 59.929 44.000 3.59 3.41 31.07 4.61
2304 3426 1.204941 ACTGTTCGCTTATCGCCTTCT 59.795 47.619 0.00 0.00 38.27 2.85
2310 3432 3.596214 TCGCTTATCGCCTTCTTCTTTT 58.404 40.909 0.00 0.00 38.27 2.27
2335 3479 8.133024 TGCCTTTATCAAGTGTTTCCATAATT 57.867 30.769 0.00 0.00 0.00 1.40
2366 3510 6.705302 AGATGATTTTGCTAGTCTCTTGTCA 58.295 36.000 0.00 0.00 0.00 3.58
2457 3601 8.794335 AATCTAGGAAAGGTACAGAACAATTC 57.206 34.615 0.00 0.00 0.00 2.17
2644 3831 9.226606 CTGAAAGAATGTTGTTTATAGGTGGTA 57.773 33.333 0.00 0.00 34.07 3.25
2731 3918 1.482593 TGGTCGGTTGGTTGCATTTTT 59.517 42.857 0.00 0.00 0.00 1.94
2816 4003 9.799106 TCAAGATTTTCAGGTCTTTCTCTTATT 57.201 29.630 0.00 0.00 32.60 1.40
2858 4045 2.623878 AGCTCTTCCATGCATCTGAG 57.376 50.000 0.00 3.42 0.00 3.35
2890 4077 6.427853 GCTAATCTTGGTTGCCAAATCTTTTT 59.572 34.615 2.07 0.00 43.44 1.94
3088 4276 5.355350 CCTTGTAGTTTCTCCTTGCTATTGG 59.645 44.000 0.00 0.00 0.00 3.16
3102 4290 6.597672 CCTTGCTATTGGATTAGTTGTGTACA 59.402 38.462 0.00 0.00 0.00 2.90
3173 4361 5.953571 ACTCTGGGATTTTGGTTCTAACTT 58.046 37.500 0.00 0.00 0.00 2.66
3216 4404 1.476488 GCAACTGTGGTTCCAACACTT 59.524 47.619 0.00 0.00 39.52 3.16
3257 4445 7.653713 TGATCTTCTCTCTGTAAGTTTCACAAC 59.346 37.037 0.00 0.00 33.76 3.32
3260 4448 5.357257 TCTCTCTGTAAGTTTCACAACCAC 58.643 41.667 0.00 0.00 32.70 4.16
3313 4502 9.565213 GGATTATGCATTTGTGCTTATTATCTC 57.435 33.333 3.54 0.00 35.49 2.75
3389 4578 4.578871 AGGGTTTTGCAATGCCTTATTTC 58.421 39.130 16.24 2.86 0.00 2.17
3448 4637 3.920231 TCTGCCTCTATTGCTGTGATT 57.080 42.857 0.00 0.00 0.00 2.57
3465 4654 6.129009 GCTGTGATTTTGTCTGTGCTTATTTG 60.129 38.462 0.00 0.00 0.00 2.32
3540 4736 5.047872 TCCCACATGAATTCAGACAAACATG 60.048 40.000 14.54 7.04 40.24 3.21
3542 4738 4.624024 CACATGAATTCAGACAAACATGCC 59.376 41.667 14.54 0.00 38.70 4.40
3583 4779 4.449743 GTCGTACAAACTGAAGTTGCCATA 59.550 41.667 0.00 0.00 38.44 2.74
3629 4825 3.137176 AGGTGCATATGCTACCAGAATGT 59.863 43.478 32.44 18.66 41.46 2.71
3630 4826 3.885297 GGTGCATATGCTACCAGAATGTT 59.115 43.478 29.18 0.00 42.66 2.71
3742 4938 5.107133 GCTCTTGCATGATTTGTATTGCTT 58.893 37.500 2.33 0.00 39.41 3.91
3764 4962 9.457436 TGCTTCATATGCAGTCATGAATTATAT 57.543 29.630 16.89 0.49 39.69 0.86
3773 4971 7.444792 TGCAGTCATGAATTATATACATGTGCA 59.555 33.333 17.28 17.28 44.03 4.57
3774 4972 7.961283 GCAGTCATGAATTATATACATGTGCAG 59.039 37.037 9.11 8.38 40.43 4.41
3775 4973 8.996271 CAGTCATGAATTATATACATGTGCAGT 58.004 33.333 9.11 0.00 41.14 4.40
3838 5138 1.623811 TGCTAACTTCTCTCCACACCC 59.376 52.381 0.00 0.00 0.00 4.61
3841 5141 0.969894 AACTTCTCTCCACACCCTCG 59.030 55.000 0.00 0.00 0.00 4.63
3873 5173 2.744494 GCTCTGCTTAGATCCAACCAGG 60.744 54.545 0.00 0.00 39.47 4.45
3891 5191 1.561542 AGGAGAATCAATGCCCGAACT 59.438 47.619 0.00 0.00 36.25 3.01
3927 5227 2.751166 ACTTCAAGGATCTGGACGTG 57.249 50.000 0.00 0.00 0.00 4.49
3941 5241 1.948145 GGACGTGTCCTCGTAGATCAT 59.052 52.381 11.81 0.00 46.16 2.45
3942 5242 2.287069 GGACGTGTCCTCGTAGATCATG 60.287 54.545 11.81 0.00 46.16 3.07
3944 5244 2.355132 ACGTGTCCTCGTAGATCATGTC 59.645 50.000 0.00 0.00 42.35 3.06
3969 5269 6.360618 CCCTGCTCCTCTGTAAATTAAGATT 58.639 40.000 0.00 0.00 0.00 2.40
3976 5276 5.276868 CCTCTGTAAATTAAGATTGCGTCGG 60.277 44.000 0.00 0.00 0.00 4.79
3977 5277 5.172934 TCTGTAAATTAAGATTGCGTCGGT 58.827 37.500 0.00 0.00 0.00 4.69
3980 5280 2.825086 ATTAAGATTGCGTCGGTTGC 57.175 45.000 0.00 0.00 0.00 4.17
3999 5299 1.933247 CTCGACAGCTTCCTGAATCC 58.067 55.000 0.00 0.00 41.77 3.01
4001 5301 1.478510 TCGACAGCTTCCTGAATCCTC 59.521 52.381 0.00 0.00 41.77 3.71
4002 5302 1.472376 CGACAGCTTCCTGAATCCTCC 60.472 57.143 0.00 0.00 41.77 4.30
4003 5303 0.915364 ACAGCTTCCTGAATCCTCCC 59.085 55.000 0.00 0.00 41.77 4.30
4004 5304 0.179062 CAGCTTCCTGAATCCTCCCG 60.179 60.000 0.00 0.00 41.77 5.14
4005 5305 1.147153 GCTTCCTGAATCCTCCCGG 59.853 63.158 0.00 0.00 0.00 5.73
4071 5371 6.157211 GTGTAGAGAGAAATGAGAACGGAAA 58.843 40.000 0.00 0.00 0.00 3.13
4099 5399 1.272816 TGATCCACCCTTCCGTGTAGA 60.273 52.381 0.00 0.00 31.47 2.59
4106 5407 0.320374 CCTTCCGTGTAGACCAAGCA 59.680 55.000 0.00 0.00 0.00 3.91
4115 5418 5.277825 CGTGTAGACCAAGCAAATTGAAAA 58.722 37.500 0.00 0.00 41.83 2.29
4145 5448 0.252479 CTCTGGGAGCTCTGCATTGT 59.748 55.000 14.64 0.00 0.00 2.71
4152 5455 2.751259 GGAGCTCTGCATTGTGATTTCA 59.249 45.455 14.64 0.00 0.00 2.69
4403 5706 4.122776 GGTACGTCAAGATTGCTCATCAT 58.877 43.478 0.00 0.00 33.75 2.45
4419 5722 9.602568 TTGCTCATCATGTTTTTGCATATTAAT 57.397 25.926 0.00 0.00 0.00 1.40
4443 5746 7.225523 TCTAGTTTTAAATAACGGCGATGAC 57.774 36.000 16.62 0.00 33.26 3.06
4447 5750 7.976826 AGTTTTAAATAACGGCGATGACATTA 58.023 30.769 16.62 0.00 33.26 1.90
4469 5772 5.574891 ACATGTTTGGCGCTAAATTGATA 57.425 34.783 27.01 12.96 0.00 2.15
4472 5775 6.476380 ACATGTTTGGCGCTAAATTGATATTG 59.524 34.615 27.01 17.23 0.00 1.90
4475 5778 7.539436 TGTTTGGCGCTAAATTGATATTGTAA 58.461 30.769 22.14 0.00 0.00 2.41
4520 5823 5.747197 CGGTTTAGATGACGCTAAGTTGTAT 59.253 40.000 0.00 0.00 32.42 2.29
4522 5825 7.594015 CGGTTTAGATGACGCTAAGTTGTATAT 59.406 37.037 0.00 0.00 32.42 0.86
4527 5830 7.661968 AGATGACGCTAAGTTGTATATGATGT 58.338 34.615 0.00 0.00 0.00 3.06
4544 5847 1.136828 TGTGTTTAGTGTGAGGCCCT 58.863 50.000 0.00 0.00 0.00 5.19
4545 5848 2.331166 TGTGTTTAGTGTGAGGCCCTA 58.669 47.619 0.00 0.00 0.00 3.53
4546 5849 2.910319 TGTGTTTAGTGTGAGGCCCTAT 59.090 45.455 0.00 0.00 0.00 2.57
4547 5850 3.270877 GTGTTTAGTGTGAGGCCCTATG 58.729 50.000 0.00 0.00 0.00 2.23
4548 5851 2.910319 TGTTTAGTGTGAGGCCCTATGT 59.090 45.455 0.00 0.00 0.00 2.29
4549 5852 3.329520 TGTTTAGTGTGAGGCCCTATGTT 59.670 43.478 0.00 0.00 0.00 2.71
4550 5853 4.202524 TGTTTAGTGTGAGGCCCTATGTTT 60.203 41.667 0.00 0.00 0.00 2.83
4551 5854 4.650972 TTAGTGTGAGGCCCTATGTTTT 57.349 40.909 0.00 0.00 0.00 2.43
4552 5855 3.525800 AGTGTGAGGCCCTATGTTTTT 57.474 42.857 0.00 0.00 0.00 1.94
4553 5856 4.650972 AGTGTGAGGCCCTATGTTTTTA 57.349 40.909 0.00 0.00 0.00 1.52
4554 5857 4.993028 AGTGTGAGGCCCTATGTTTTTAA 58.007 39.130 0.00 0.00 0.00 1.52
4555 5858 5.010282 AGTGTGAGGCCCTATGTTTTTAAG 58.990 41.667 0.00 0.00 0.00 1.85
4556 5859 4.157840 GTGTGAGGCCCTATGTTTTTAAGG 59.842 45.833 0.00 0.00 0.00 2.69
4557 5860 3.130516 GTGAGGCCCTATGTTTTTAAGGC 59.869 47.826 0.00 0.00 39.73 4.35
4558 5861 2.357952 GAGGCCCTATGTTTTTAAGGCG 59.642 50.000 0.00 0.00 41.41 5.52
4559 5862 2.025699 AGGCCCTATGTTTTTAAGGCGA 60.026 45.455 0.00 0.00 41.41 5.54
4560 5863 2.098607 GGCCCTATGTTTTTAAGGCGAC 59.901 50.000 0.00 0.00 41.41 5.19
4561 5864 2.223180 GCCCTATGTTTTTAAGGCGACG 60.223 50.000 0.00 0.00 0.00 5.12
4562 5865 2.223180 CCCTATGTTTTTAAGGCGACGC 60.223 50.000 12.43 12.43 0.00 5.19
4575 5878 2.336809 GACGCCTAGGCATCGAGG 59.663 66.667 32.47 17.63 42.06 4.63
4584 5887 4.625800 GCATCGAGGCCTGAAAGT 57.374 55.556 12.00 0.00 0.00 2.66
4585 5888 2.093216 GCATCGAGGCCTGAAAGTG 58.907 57.895 12.00 5.00 0.00 3.16
4586 5889 0.391661 GCATCGAGGCCTGAAAGTGA 60.392 55.000 12.00 0.00 0.00 3.41
4587 5890 1.945819 GCATCGAGGCCTGAAAGTGAA 60.946 52.381 12.00 0.00 0.00 3.18
4588 5891 2.005451 CATCGAGGCCTGAAAGTGAAG 58.995 52.381 12.00 0.00 0.00 3.02
4589 5892 0.320771 TCGAGGCCTGAAAGTGAAGC 60.321 55.000 12.00 0.00 0.00 3.86
4590 5893 1.630244 CGAGGCCTGAAAGTGAAGCG 61.630 60.000 12.00 0.00 0.00 4.68
4591 5894 0.603975 GAGGCCTGAAAGTGAAGCGT 60.604 55.000 12.00 0.00 0.00 5.07
4592 5895 0.603975 AGGCCTGAAAGTGAAGCGTC 60.604 55.000 3.11 0.00 0.00 5.19
4593 5896 1.493311 GCCTGAAAGTGAAGCGTCG 59.507 57.895 0.00 0.00 0.00 5.12
4594 5897 1.493311 CCTGAAAGTGAAGCGTCGC 59.507 57.895 9.80 9.80 34.24 5.19
4595 5898 1.493311 CTGAAAGTGAAGCGTCGCC 59.507 57.895 14.86 0.00 34.60 5.54
4596 5899 0.946221 CTGAAAGTGAAGCGTCGCCT 60.946 55.000 14.86 0.00 34.60 5.52
4597 5900 0.531974 TGAAAGTGAAGCGTCGCCTT 60.532 50.000 14.86 7.13 34.60 4.35
4598 5901 0.110644 GAAAGTGAAGCGTCGCCTTG 60.111 55.000 14.86 0.00 34.60 3.61
4599 5902 0.531974 AAAGTGAAGCGTCGCCTTGA 60.532 50.000 14.86 0.00 34.60 3.02
4600 5903 0.531974 AAGTGAAGCGTCGCCTTGAA 60.532 50.000 14.86 0.00 34.60 2.69
4601 5904 0.946221 AGTGAAGCGTCGCCTTGAAG 60.946 55.000 14.86 0.00 34.60 3.02
4602 5905 1.069090 TGAAGCGTCGCCTTGAAGT 59.931 52.632 14.86 0.00 0.00 3.01
4603 5906 0.944311 TGAAGCGTCGCCTTGAAGTC 60.944 55.000 14.86 1.10 0.00 3.01
4604 5907 0.944311 GAAGCGTCGCCTTGAAGTCA 60.944 55.000 14.86 0.00 0.00 3.41
4605 5908 0.320771 AAGCGTCGCCTTGAAGTCAT 60.321 50.000 14.86 0.00 0.00 3.06
4606 5909 0.530744 AGCGTCGCCTTGAAGTCATA 59.469 50.000 14.86 0.00 0.00 2.15
4607 5910 0.924090 GCGTCGCCTTGAAGTCATAG 59.076 55.000 5.75 0.00 0.00 2.23
4830 6161 3.762407 TCTCAATGGTTTTGAGGACGA 57.238 42.857 13.68 0.00 44.43 4.20
4847 6178 1.489230 ACGAAGGAGAACACCAACCTT 59.511 47.619 0.00 0.00 44.08 3.50
4911 6242 0.905809 TTACCACCTCCAAGGCGCTA 60.906 55.000 7.64 0.00 39.63 4.26
4913 6244 2.125106 CACCTCCAAGGCGCTACC 60.125 66.667 7.64 0.00 39.63 3.18
4928 6259 1.739371 GCTACCGAAGTAAGCACCTGG 60.739 57.143 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.808945 CTTGAATGTCTGAGTGGGCAC 59.191 52.381 0.00 0.00 0.00 5.01
9 10 1.421268 ACTTGAATGTCTGAGTGGGCA 59.579 47.619 0.00 0.00 0.00 5.36
10 11 2.079925 GACTTGAATGTCTGAGTGGGC 58.920 52.381 0.00 0.00 34.39 5.36
11 12 2.341257 CGACTTGAATGTCTGAGTGGG 58.659 52.381 0.00 0.00 35.00 4.61
12 13 1.728971 GCGACTTGAATGTCTGAGTGG 59.271 52.381 0.00 0.00 35.00 4.00
13 14 2.407090 TGCGACTTGAATGTCTGAGTG 58.593 47.619 0.00 0.00 35.00 3.51
14 15 2.802816 GTTGCGACTTGAATGTCTGAGT 59.197 45.455 0.00 0.00 35.00 3.41
15 16 2.158449 GGTTGCGACTTGAATGTCTGAG 59.842 50.000 3.59 0.00 35.00 3.35
16 17 2.143122 GGTTGCGACTTGAATGTCTGA 58.857 47.619 3.59 0.00 35.00 3.27
17 18 1.136252 CGGTTGCGACTTGAATGTCTG 60.136 52.381 3.59 0.00 35.00 3.51
18 19 1.148310 CGGTTGCGACTTGAATGTCT 58.852 50.000 3.59 0.00 35.00 3.41
19 20 0.165944 CCGGTTGCGACTTGAATGTC 59.834 55.000 3.59 0.00 0.00 3.06
20 21 0.250124 TCCGGTTGCGACTTGAATGT 60.250 50.000 0.00 0.00 0.00 2.71
21 22 0.443869 CTCCGGTTGCGACTTGAATG 59.556 55.000 0.00 0.00 0.00 2.67
22 23 0.320374 TCTCCGGTTGCGACTTGAAT 59.680 50.000 0.00 0.00 0.00 2.57
23 24 0.319555 CTCTCCGGTTGCGACTTGAA 60.320 55.000 0.00 0.00 0.00 2.69
24 25 1.289066 CTCTCCGGTTGCGACTTGA 59.711 57.895 0.00 0.15 0.00 3.02
25 26 1.738099 CCTCTCCGGTTGCGACTTG 60.738 63.158 0.00 0.00 0.00 3.16
26 27 2.657237 CCTCTCCGGTTGCGACTT 59.343 61.111 0.00 0.00 0.00 3.01
27 28 4.070552 GCCTCTCCGGTTGCGACT 62.071 66.667 0.00 0.00 34.25 4.18
28 29 3.876589 TTGCCTCTCCGGTTGCGAC 62.877 63.158 0.00 0.00 34.25 5.19
29 30 2.668185 TTTTGCCTCTCCGGTTGCGA 62.668 55.000 0.00 0.00 34.25 5.10
30 31 2.258013 TTTTGCCTCTCCGGTTGCG 61.258 57.895 0.00 0.00 34.25 4.85
31 32 1.285950 GTTTTGCCTCTCCGGTTGC 59.714 57.895 0.00 0.40 34.25 4.17
32 33 1.574428 CGTTTTGCCTCTCCGGTTG 59.426 57.895 0.00 0.00 34.25 3.77
33 34 1.599797 CCGTTTTGCCTCTCCGGTT 60.600 57.895 0.00 0.00 34.10 4.44
34 35 2.032071 CCGTTTTGCCTCTCCGGT 59.968 61.111 0.00 0.00 34.10 5.28
35 36 2.746277 CCCGTTTTGCCTCTCCGG 60.746 66.667 0.00 0.00 38.39 5.14
36 37 3.431725 GCCCGTTTTGCCTCTCCG 61.432 66.667 0.00 0.00 0.00 4.63
37 38 3.062466 GGCCCGTTTTGCCTCTCC 61.062 66.667 0.00 0.00 45.70 3.71
43 44 0.385390 CATCATAGGGCCCGTTTTGC 59.615 55.000 18.44 0.00 0.00 3.68
44 45 0.385390 GCATCATAGGGCCCGTTTTG 59.615 55.000 18.44 12.87 0.00 2.44
45 46 0.258774 AGCATCATAGGGCCCGTTTT 59.741 50.000 18.44 0.00 0.00 2.43
46 47 0.258774 AAGCATCATAGGGCCCGTTT 59.741 50.000 18.44 0.39 0.00 3.60
47 48 0.179018 GAAGCATCATAGGGCCCGTT 60.179 55.000 18.44 4.58 0.00 4.44
48 49 1.451936 GAAGCATCATAGGGCCCGT 59.548 57.895 18.44 6.50 0.00 5.28
49 50 1.302832 GGAAGCATCATAGGGCCCG 60.303 63.158 18.44 1.51 0.00 6.13
50 51 0.251077 CTGGAAGCATCATAGGGCCC 60.251 60.000 16.46 16.46 0.00 5.80
51 52 0.251077 CCTGGAAGCATCATAGGGCC 60.251 60.000 0.00 0.00 31.36 5.80
52 53 0.892814 GCCTGGAAGCATCATAGGGC 60.893 60.000 11.81 5.98 34.02 5.19
53 54 0.769873 AGCCTGGAAGCATCATAGGG 59.230 55.000 11.81 0.57 34.02 3.53
54 55 1.544982 CCAGCCTGGAAGCATCATAGG 60.545 57.143 4.15 7.02 40.96 2.57
55 56 1.419012 TCCAGCCTGGAAGCATCATAG 59.581 52.381 12.03 0.00 45.00 2.23
56 57 1.510492 TCCAGCCTGGAAGCATCATA 58.490 50.000 12.03 0.00 45.00 2.15
57 58 2.314402 TCCAGCCTGGAAGCATCAT 58.686 52.632 12.03 0.00 45.00 2.45
58 59 3.824815 TCCAGCCTGGAAGCATCA 58.175 55.556 12.03 0.00 45.00 3.07
71 72 4.929781 GCTTGGATAGCTGAAAATTCCAG 58.070 43.478 0.00 4.05 46.77 3.86
72 73 4.989279 GCTTGGATAGCTGAAAATTCCA 57.011 40.909 0.00 0.00 46.77 3.53
84 85 4.201950 GCATTGTAACACCTGCTTGGATAG 60.202 45.833 3.40 0.00 39.71 2.08
85 86 3.694072 GCATTGTAACACCTGCTTGGATA 59.306 43.478 3.40 0.00 39.71 2.59
86 87 2.493278 GCATTGTAACACCTGCTTGGAT 59.507 45.455 3.40 0.00 39.71 3.41
87 88 1.885887 GCATTGTAACACCTGCTTGGA 59.114 47.619 3.40 0.00 39.71 3.53
88 89 1.067635 GGCATTGTAACACCTGCTTGG 60.068 52.381 7.66 0.00 42.93 3.61
89 90 1.401409 CGGCATTGTAACACCTGCTTG 60.401 52.381 7.66 0.00 35.03 4.01
90 91 0.881118 CGGCATTGTAACACCTGCTT 59.119 50.000 7.66 0.00 35.03 3.91
91 92 0.960364 CCGGCATTGTAACACCTGCT 60.960 55.000 0.00 0.00 35.03 4.24
92 93 1.506262 CCGGCATTGTAACACCTGC 59.494 57.895 0.00 0.00 0.00 4.85
93 94 1.506262 GCCGGCATTGTAACACCTG 59.494 57.895 24.80 0.00 0.00 4.00
94 95 1.677633 GGCCGGCATTGTAACACCT 60.678 57.895 30.85 0.00 0.00 4.00
95 96 1.933115 CTGGCCGGCATTGTAACACC 61.933 60.000 30.85 6.94 0.00 4.16
96 97 0.958382 TCTGGCCGGCATTGTAACAC 60.958 55.000 30.85 7.78 0.00 3.32
97 98 0.250945 TTCTGGCCGGCATTGTAACA 60.251 50.000 30.85 14.12 0.00 2.41
98 99 0.885196 TTTCTGGCCGGCATTGTAAC 59.115 50.000 30.85 9.47 0.00 2.50
99 100 1.271102 GTTTTCTGGCCGGCATTGTAA 59.729 47.619 30.85 13.51 0.00 2.41
100 101 0.885196 GTTTTCTGGCCGGCATTGTA 59.115 50.000 30.85 7.29 0.00 2.41
101 102 1.665442 GTTTTCTGGCCGGCATTGT 59.335 52.632 30.85 0.00 0.00 2.71
102 103 1.079888 GGTTTTCTGGCCGGCATTG 60.080 57.895 30.85 17.30 0.00 2.82
103 104 0.039035 TAGGTTTTCTGGCCGGCATT 59.961 50.000 30.85 4.48 0.00 3.56
104 105 0.039035 TTAGGTTTTCTGGCCGGCAT 59.961 50.000 30.85 4.23 0.00 4.40
105 106 0.039035 ATTAGGTTTTCTGGCCGGCA 59.961 50.000 30.85 13.75 0.00 5.69
106 107 0.455815 CATTAGGTTTTCTGGCCGGC 59.544 55.000 21.18 21.18 0.00 6.13
107 108 2.122783 TCATTAGGTTTTCTGGCCGG 57.877 50.000 4.71 4.71 0.00 6.13
108 109 2.817258 TGTTCATTAGGTTTTCTGGCCG 59.183 45.455 0.00 0.00 0.00 6.13
109 110 6.321181 TCATATGTTCATTAGGTTTTCTGGCC 59.679 38.462 1.90 0.00 0.00 5.36
110 111 7.148086 TGTCATATGTTCATTAGGTTTTCTGGC 60.148 37.037 1.90 0.00 0.00 4.85
111 112 8.279970 TGTCATATGTTCATTAGGTTTTCTGG 57.720 34.615 1.90 0.00 0.00 3.86
116 117 9.466497 AGTGATTGTCATATGTTCATTAGGTTT 57.534 29.630 1.90 0.00 0.00 3.27
118 119 9.770097 CTAGTGATTGTCATATGTTCATTAGGT 57.230 33.333 1.90 0.00 0.00 3.08
119 120 9.987272 TCTAGTGATTGTCATATGTTCATTAGG 57.013 33.333 18.29 9.19 31.38 2.69
123 124 8.820933 CGTTTCTAGTGATTGTCATATGTTCAT 58.179 33.333 1.90 0.00 0.00 2.57
124 125 8.032451 TCGTTTCTAGTGATTGTCATATGTTCA 58.968 33.333 1.90 1.19 0.00 3.18
125 126 8.407457 TCGTTTCTAGTGATTGTCATATGTTC 57.593 34.615 1.90 0.00 0.00 3.18
126 127 8.251026 TCTCGTTTCTAGTGATTGTCATATGTT 58.749 33.333 1.90 0.00 0.00 2.71
127 128 7.772166 TCTCGTTTCTAGTGATTGTCATATGT 58.228 34.615 1.90 0.00 0.00 2.29
128 129 8.809159 ATCTCGTTTCTAGTGATTGTCATATG 57.191 34.615 0.00 0.00 0.00 1.78
129 130 9.823647 AAATCTCGTTTCTAGTGATTGTCATAT 57.176 29.630 0.00 0.00 33.70 1.78
130 131 9.653287 AAAATCTCGTTTCTAGTGATTGTCATA 57.347 29.630 0.00 0.00 33.70 2.15
131 132 8.553459 AAAATCTCGTTTCTAGTGATTGTCAT 57.447 30.769 0.00 0.00 33.70 3.06
132 133 7.872993 AGAAAATCTCGTTTCTAGTGATTGTCA 59.127 33.333 11.37 0.00 44.24 3.58
133 134 8.245701 AGAAAATCTCGTTTCTAGTGATTGTC 57.754 34.615 0.00 0.00 44.24 3.18
134 135 9.141400 GTAGAAAATCTCGTTTCTAGTGATTGT 57.859 33.333 7.47 0.00 45.97 2.71
135 136 8.314635 CGTAGAAAATCTCGTTTCTAGTGATTG 58.685 37.037 7.47 0.00 45.97 2.67
136 137 8.242053 TCGTAGAAAATCTCGTTTCTAGTGATT 58.758 33.333 7.47 0.00 45.97 2.57
137 138 7.759465 TCGTAGAAAATCTCGTTTCTAGTGAT 58.241 34.615 7.47 0.00 45.97 3.06
138 139 7.137490 TCGTAGAAAATCTCGTTTCTAGTGA 57.863 36.000 7.47 6.57 45.97 3.41
139 140 7.166142 GGATCGTAGAAAATCTCGTTTCTAGTG 59.834 40.741 7.47 4.76 45.97 2.74
140 141 7.148120 TGGATCGTAGAAAATCTCGTTTCTAGT 60.148 37.037 7.47 0.00 45.97 2.57
141 142 7.166142 GTGGATCGTAGAAAATCTCGTTTCTAG 59.834 40.741 7.47 3.86 45.97 2.43
142 143 6.971184 GTGGATCGTAGAAAATCTCGTTTCTA 59.029 38.462 3.81 3.81 44.24 2.10
143 144 5.805994 GTGGATCGTAGAAAATCTCGTTTCT 59.194 40.000 5.58 5.58 46.88 2.52
144 145 5.575606 TGTGGATCGTAGAAAATCTCGTTTC 59.424 40.000 0.00 0.00 43.58 2.78
145 146 5.475719 TGTGGATCGTAGAAAATCTCGTTT 58.524 37.500 0.00 0.00 43.58 3.60
146 147 5.068234 TGTGGATCGTAGAAAATCTCGTT 57.932 39.130 0.00 0.00 43.58 3.85
147 148 4.713824 TGTGGATCGTAGAAAATCTCGT 57.286 40.909 0.00 0.00 43.58 4.18
148 149 5.400782 CAGATGTGGATCGTAGAAAATCTCG 59.599 44.000 0.00 0.00 43.58 4.04
149 150 6.507900 TCAGATGTGGATCGTAGAAAATCTC 58.492 40.000 0.00 0.00 43.58 2.75
150 151 6.471233 TCAGATGTGGATCGTAGAAAATCT 57.529 37.500 0.00 0.00 43.58 2.40
151 152 7.225538 ACATTCAGATGTGGATCGTAGAAAATC 59.774 37.037 0.00 0.00 44.64 2.17
152 153 7.050377 ACATTCAGATGTGGATCGTAGAAAAT 58.950 34.615 0.00 0.00 44.64 1.82
153 154 6.406370 ACATTCAGATGTGGATCGTAGAAAA 58.594 36.000 0.00 0.00 44.64 2.29
154 155 5.977635 ACATTCAGATGTGGATCGTAGAAA 58.022 37.500 0.00 0.00 44.64 2.52
155 156 5.598416 ACATTCAGATGTGGATCGTAGAA 57.402 39.130 0.00 0.00 44.64 2.10
156 157 6.490040 TGATACATTCAGATGTGGATCGTAGA 59.510 38.462 2.47 0.00 45.80 2.59
157 158 6.681777 TGATACATTCAGATGTGGATCGTAG 58.318 40.000 2.47 0.00 45.80 3.51
158 159 6.648879 TGATACATTCAGATGTGGATCGTA 57.351 37.500 2.47 0.00 45.80 3.43
159 160 5.535753 TGATACATTCAGATGTGGATCGT 57.464 39.130 2.47 0.00 45.80 3.73
160 161 6.091849 GGATTGATACATTCAGATGTGGATCG 59.908 42.308 2.47 0.00 45.80 3.69
161 162 6.938596 TGGATTGATACATTCAGATGTGGATC 59.061 38.462 2.47 2.76 45.80 3.36
162 163 6.844829 TGGATTGATACATTCAGATGTGGAT 58.155 36.000 2.47 0.00 45.80 3.41
163 164 6.251255 TGGATTGATACATTCAGATGTGGA 57.749 37.500 2.47 0.00 45.80 4.02
164 165 6.512253 CGTTGGATTGATACATTCAGATGTGG 60.512 42.308 2.47 0.00 45.80 4.17
165 166 6.424683 CGTTGGATTGATACATTCAGATGTG 58.575 40.000 2.47 0.00 45.80 3.21
167 168 5.528690 ACCGTTGGATTGATACATTCAGATG 59.471 40.000 0.00 0.00 39.25 2.90
168 169 5.684704 ACCGTTGGATTGATACATTCAGAT 58.315 37.500 0.00 0.00 35.27 2.90
169 170 5.097742 ACCGTTGGATTGATACATTCAGA 57.902 39.130 0.00 0.00 35.27 3.27
170 171 4.875536 TGACCGTTGGATTGATACATTCAG 59.124 41.667 0.00 0.00 35.27 3.02
171 172 4.837972 TGACCGTTGGATTGATACATTCA 58.162 39.130 0.00 0.00 0.00 2.57
172 173 4.273480 CCTGACCGTTGGATTGATACATTC 59.727 45.833 0.00 0.00 0.00 2.67
173 174 4.080582 TCCTGACCGTTGGATTGATACATT 60.081 41.667 0.00 0.00 0.00 2.71
174 175 3.454447 TCCTGACCGTTGGATTGATACAT 59.546 43.478 0.00 0.00 0.00 2.29
175 176 2.835156 TCCTGACCGTTGGATTGATACA 59.165 45.455 0.00 0.00 0.00 2.29
176 177 3.536956 TCCTGACCGTTGGATTGATAC 57.463 47.619 0.00 0.00 0.00 2.24
182 183 0.394352 GGCAATCCTGACCGTTGGAT 60.394 55.000 2.28 2.28 44.21 3.41
183 184 1.002624 GGCAATCCTGACCGTTGGA 60.003 57.895 0.00 0.00 36.72 3.53
184 185 2.046285 GGGCAATCCTGACCGTTGG 61.046 63.158 0.00 0.00 42.40 3.77
185 186 3.590824 GGGCAATCCTGACCGTTG 58.409 61.111 0.00 0.00 42.40 4.10
194 195 1.907807 TTGCACCACAGGGCAATCC 60.908 57.895 0.00 0.00 44.41 3.01
195 196 3.776158 TTGCACCACAGGGCAATC 58.224 55.556 0.00 0.00 44.41 2.67
197 198 2.521465 CCTTGCACCACAGGGCAA 60.521 61.111 2.35 2.35 46.84 4.52
198 199 4.601794 CCCTTGCACCACAGGGCA 62.602 66.667 8.28 0.00 44.20 5.36
207 208 2.753849 TAATGGCGCCCCTTGCAC 60.754 61.111 26.77 0.00 41.33 4.57
208 209 2.440065 CTAATGGCGCCCCTTGCA 60.440 61.111 26.77 3.54 41.33 4.08
209 210 3.904479 GCTAATGGCGCCCCTTGC 61.904 66.667 26.77 19.05 0.00 4.01
210 211 0.537143 TATGCTAATGGCGCCCCTTG 60.537 55.000 26.77 12.90 45.43 3.61
211 212 0.250901 CTATGCTAATGGCGCCCCTT 60.251 55.000 26.77 19.81 45.43 3.95
212 213 1.376466 CTATGCTAATGGCGCCCCT 59.624 57.895 26.77 13.79 45.43 4.79
213 214 2.335712 GCTATGCTAATGGCGCCCC 61.336 63.158 26.77 7.60 45.43 5.80
214 215 3.267974 GCTATGCTAATGGCGCCC 58.732 61.111 26.77 8.57 45.43 6.13
218 219 1.264288 GGTCAACGCTATGCTAATGGC 59.736 52.381 0.00 0.00 42.22 4.40
219 220 2.838736 AGGTCAACGCTATGCTAATGG 58.161 47.619 0.00 0.00 0.00 3.16
220 221 4.882671 AAAGGTCAACGCTATGCTAATG 57.117 40.909 0.00 0.00 0.00 1.90
221 222 6.288294 TCATAAAGGTCAACGCTATGCTAAT 58.712 36.000 0.00 0.00 0.00 1.73
222 223 5.666462 TCATAAAGGTCAACGCTATGCTAA 58.334 37.500 0.00 0.00 0.00 3.09
223 224 5.270893 TCATAAAGGTCAACGCTATGCTA 57.729 39.130 0.00 0.00 0.00 3.49
224 225 4.137116 TCATAAAGGTCAACGCTATGCT 57.863 40.909 0.00 0.00 0.00 3.79
225 226 5.424121 AATCATAAAGGTCAACGCTATGC 57.576 39.130 0.00 0.00 0.00 3.14
226 227 8.559536 ACATAAATCATAAAGGTCAACGCTATG 58.440 33.333 0.00 0.00 0.00 2.23
227 228 8.677148 ACATAAATCATAAAGGTCAACGCTAT 57.323 30.769 0.00 0.00 0.00 2.97
228 229 9.256477 CTACATAAATCATAAAGGTCAACGCTA 57.744 33.333 0.00 0.00 0.00 4.26
229 230 7.254795 GCTACATAAATCATAAAGGTCAACGCT 60.255 37.037 0.00 0.00 0.00 5.07
230 231 6.851330 GCTACATAAATCATAAAGGTCAACGC 59.149 38.462 0.00 0.00 0.00 4.84
231 232 8.142994 AGCTACATAAATCATAAAGGTCAACG 57.857 34.615 0.00 0.00 0.00 4.10
266 267 7.672240 AGTTACCCTGAAAACTTTGTGAAAAA 58.328 30.769 0.00 0.00 32.00 1.94
267 268 7.234661 AGTTACCCTGAAAACTTTGTGAAAA 57.765 32.000 0.00 0.00 32.00 2.29
268 269 6.844097 AGTTACCCTGAAAACTTTGTGAAA 57.156 33.333 0.00 0.00 32.00 2.69
269 270 6.350612 CCAAGTTACCCTGAAAACTTTGTGAA 60.351 38.462 0.00 0.00 41.89 3.18
270 271 5.126384 CCAAGTTACCCTGAAAACTTTGTGA 59.874 40.000 0.00 0.00 41.89 3.58
271 272 5.105513 ACCAAGTTACCCTGAAAACTTTGTG 60.106 40.000 4.48 0.00 41.89 3.33
284 285 6.884836 AGTATCTGATGAAAACCAAGTTACCC 59.115 38.462 0.00 0.00 0.00 3.69
313 315 1.156736 GCAGACGTGTTTGGCTACAT 58.843 50.000 0.00 0.00 0.00 2.29
314 316 0.882927 GGCAGACGTGTTTGGCTACA 60.883 55.000 9.44 0.00 37.30 2.74
315 317 0.882927 TGGCAGACGTGTTTGGCTAC 60.883 55.000 16.17 0.00 40.25 3.58
316 318 0.882927 GTGGCAGACGTGTTTGGCTA 60.883 55.000 16.17 2.87 40.25 3.93
317 319 2.186826 GTGGCAGACGTGTTTGGCT 61.187 57.895 16.17 0.00 40.25 4.75
318 320 2.331451 GTGGCAGACGTGTTTGGC 59.669 61.111 9.73 9.73 40.06 4.52
319 321 2.631428 CGTGGCAGACGTGTTTGG 59.369 61.111 0.00 0.00 43.50 3.28
335 337 2.061028 GCCTTTCAAGCCATTTTCACG 58.939 47.619 0.00 0.00 0.00 4.35
336 338 3.391506 AGCCTTTCAAGCCATTTTCAC 57.608 42.857 0.00 0.00 0.00 3.18
339 341 8.424133 CCTATATTTAGCCTTTCAAGCCATTTT 58.576 33.333 0.00 0.00 0.00 1.82
341 343 7.014615 CACCTATATTTAGCCTTTCAAGCCATT 59.985 37.037 0.00 0.00 0.00 3.16
346 348 6.942532 TGCACCTATATTTAGCCTTTCAAG 57.057 37.500 0.00 0.00 0.00 3.02
347 349 6.321181 CCTTGCACCTATATTTAGCCTTTCAA 59.679 38.462 0.00 0.00 0.00 2.69
349 351 5.241728 CCCTTGCACCTATATTTAGCCTTTC 59.758 44.000 0.00 0.00 0.00 2.62
368 370 4.778534 TTCGTAGTGAGTTACTCCCTTG 57.221 45.455 10.10 0.68 40.89 3.61
379 381 7.042725 TGTGAGAATCTTTTGTTTCGTAGTGAG 60.043 37.037 0.00 0.00 34.33 3.51
382 384 7.548196 TTGTGAGAATCTTTTGTTTCGTAGT 57.452 32.000 0.00 0.00 34.33 2.73
384 386 8.378172 AGATTGTGAGAATCTTTTGTTTCGTA 57.622 30.769 0.00 0.00 33.47 3.43
395 397 7.065563 GCACTACATGAAAGATTGTGAGAATCT 59.934 37.037 0.00 0.00 38.55 2.40
431 433 3.693807 ACTCCATCATTGTGCTTGATGT 58.306 40.909 11.48 0.00 45.83 3.06
436 438 7.067494 GGTATTTTCTACTCCATCATTGTGCTT 59.933 37.037 0.00 0.00 0.00 3.91
440 442 6.969043 TGGGTATTTTCTACTCCATCATTGT 58.031 36.000 0.00 0.00 0.00 2.71
476 478 1.194781 GGACAGAACCTCCCTCTGCA 61.195 60.000 0.00 0.00 43.48 4.41
530 533 0.939106 AAAATTGTTCCGCGCACTGC 60.939 50.000 8.75 0.00 41.47 4.40
532 535 3.957383 AAAAATTGTTCCGCGCACT 57.043 42.105 8.75 0.00 0.00 4.40
553 556 3.766591 TGGTTTGTTGATGACAGTTTGGT 59.233 39.130 0.00 0.00 39.94 3.67
559 562 4.935702 ACACATTGGTTTGTTGATGACAG 58.064 39.130 0.00 0.00 39.94 3.51
601 604 6.866480 AGTGTTTGTTCATGAGTTCATTGTT 58.134 32.000 0.00 0.00 33.61 2.83
602 605 6.455360 AGTGTTTGTTCATGAGTTCATTGT 57.545 33.333 0.00 0.00 33.61 2.71
627 630 9.508642 TTCCACTGATTTTTAAAGTTGGTTTTT 57.491 25.926 0.00 0.00 0.00 1.94
632 635 9.191995 GTACATTCCACTGATTTTTAAAGTTGG 57.808 33.333 0.00 0.00 0.00 3.77
633 636 9.191995 GGTACATTCCACTGATTTTTAAAGTTG 57.808 33.333 0.00 0.00 0.00 3.16
634 637 8.919145 TGGTACATTCCACTGATTTTTAAAGTT 58.081 29.630 0.00 0.00 31.96 2.66
649 652 4.035792 CGTTTGAGTTTGTGGTACATTCCA 59.964 41.667 0.00 0.00 44.52 3.53
650 653 4.035909 ACGTTTGAGTTTGTGGTACATTCC 59.964 41.667 0.00 0.00 44.52 3.01
651 654 4.967575 CACGTTTGAGTTTGTGGTACATTC 59.032 41.667 0.00 0.00 44.52 2.67
664 667 4.457466 AGGTTTGGTTATCACGTTTGAGT 58.543 39.130 0.00 0.00 34.35 3.41
670 673 5.217978 TCACTAAGGTTTGGTTATCACGT 57.782 39.130 0.00 0.00 0.00 4.49
677 684 5.585047 GCGATTCTATCACTAAGGTTTGGTT 59.415 40.000 0.00 0.00 0.00 3.67
684 691 6.090493 CACATCATGCGATTCTATCACTAAGG 59.910 42.308 0.00 0.00 0.00 2.69
701 708 3.646611 TCTTGGTTGTTGCACATCATG 57.353 42.857 0.00 0.00 0.00 3.07
704 711 2.331194 GCATCTTGGTTGTTGCACATC 58.669 47.619 0.00 0.00 34.04 3.06
714 721 0.105246 TGGGGTTTGGCATCTTGGTT 60.105 50.000 0.00 0.00 0.00 3.67
764 772 2.047179 GGTCAGCCGTGGGTTCTC 60.047 66.667 0.00 0.00 0.00 2.87
766 774 2.358737 CAGGTCAGCCGTGGGTTC 60.359 66.667 0.00 0.00 40.50 3.62
767 775 3.953775 CCAGGTCAGCCGTGGGTT 61.954 66.667 0.00 0.00 40.50 4.11
795 803 1.622269 CGCGTTCGTTCGTGATACC 59.378 57.895 0.00 0.00 42.80 2.73
796 804 1.015143 GCGCGTTCGTTCGTGATAC 60.015 57.895 8.43 0.00 42.80 2.24
797 805 2.490443 CGCGCGTTCGTTCGTGATA 61.490 57.895 24.19 0.00 42.80 2.15
838 857 3.335534 GTGGTGTGTGGCGTCGTC 61.336 66.667 0.00 0.00 0.00 4.20
847 866 0.251832 TTGGGTTTGTGGTGGTGTGT 60.252 50.000 0.00 0.00 0.00 3.72
866 885 1.716028 GGTGGACTTGGGAGTTGGGT 61.716 60.000 0.00 0.00 35.88 4.51
875 894 1.101049 GTGTGTGGTGGTGGACTTGG 61.101 60.000 0.00 0.00 0.00 3.61
885 904 2.281761 GGAGGGCAGTGTGTGGTG 60.282 66.667 0.00 0.00 0.00 4.17
886 905 3.570212 GGGAGGGCAGTGTGTGGT 61.570 66.667 0.00 0.00 0.00 4.16
887 906 3.252284 AGGGAGGGCAGTGTGTGG 61.252 66.667 0.00 0.00 0.00 4.17
888 907 2.348998 GAGGGAGGGCAGTGTGTG 59.651 66.667 0.00 0.00 0.00 3.82
889 908 2.930562 GGAGGGAGGGCAGTGTGT 60.931 66.667 0.00 0.00 0.00 3.72
890 909 3.721706 GGGAGGGAGGGCAGTGTG 61.722 72.222 0.00 0.00 0.00 3.82
911 930 4.677151 GAGGAGTGGGGTGGGGGT 62.677 72.222 0.00 0.00 0.00 4.95
1069 1488 4.838152 CGACATGGACGGGGGCAG 62.838 72.222 0.00 0.00 0.00 4.85
1112 1531 1.491563 GTACTGCGCGAAACACAGG 59.508 57.895 12.10 0.00 35.70 4.00
1113 1532 1.127817 CGTACTGCGCGAAACACAG 59.872 57.895 12.10 10.03 37.45 3.66
1121 1540 2.152699 CACCTTCTCGTACTGCGCG 61.153 63.158 0.00 0.00 41.07 6.86
1403 1827 0.393077 CAACAGGGGTCGAACACTCT 59.607 55.000 0.00 0.00 0.00 3.24
1417 1841 4.400109 CGGCAGCAGCAGCAACAG 62.400 66.667 12.41 0.00 45.49 3.16
1419 1843 4.695231 CACGGCAGCAGCAGCAAC 62.695 66.667 12.41 0.00 45.49 4.17
1545 1976 2.028112 GGCTGTGACCTTGACTATGTGA 60.028 50.000 0.00 0.00 0.00 3.58
1598 2150 4.299155 CAGACGAAGCTTCTGTCAGTAAA 58.701 43.478 32.86 0.00 36.50 2.01
1618 2254 4.069232 TTGTCCCCTCGCTCGCAG 62.069 66.667 0.00 0.00 0.00 5.18
1619 2255 4.373116 GTTGTCCCCTCGCTCGCA 62.373 66.667 0.00 0.00 0.00 5.10
1620 2256 3.591254 AAGTTGTCCCCTCGCTCGC 62.591 63.158 0.00 0.00 0.00 5.03
1621 2257 1.738099 CAAGTTGTCCCCTCGCTCG 60.738 63.158 0.00 0.00 0.00 5.03
1623 2259 2.032681 GCAAGTTGTCCCCTCGCT 59.967 61.111 4.48 0.00 0.00 4.93
1624 2260 3.423154 CGCAAGTTGTCCCCTCGC 61.423 66.667 4.48 0.00 0.00 5.03
1648 2284 1.477700 ACATGATCGCAACCAAATGGG 59.522 47.619 0.00 0.00 44.81 4.00
1657 2293 3.080319 TCACATTTCCACATGATCGCAA 58.920 40.909 0.00 0.00 0.00 4.85
1661 2297 9.027129 CATTACATTTCACATTTCCACATGATC 57.973 33.333 0.00 0.00 0.00 2.92
1817 2453 1.069636 CCGAAGTCAGCAAGCTTCAAC 60.070 52.381 0.00 0.00 40.63 3.18
1935 2661 1.070601 CCATCTCCCACATACATGCGA 59.929 52.381 0.00 0.00 0.00 5.10
1936 2662 1.516161 CCATCTCCCACATACATGCG 58.484 55.000 0.00 0.00 0.00 4.73
1945 2671 0.038166 TTCCAACTGCCATCTCCCAC 59.962 55.000 0.00 0.00 0.00 4.61
1947 2673 2.149973 ATTTCCAACTGCCATCTCCC 57.850 50.000 0.00 0.00 0.00 4.30
1950 2679 4.590222 AGAACAAATTTCCAACTGCCATCT 59.410 37.500 0.00 0.00 0.00 2.90
1978 2796 0.960364 TTCTGCCCCTGCTAAAAGCG 60.960 55.000 0.00 0.00 46.26 4.68
1986 3098 0.680921 TAAGTGCATTCTGCCCCTGC 60.681 55.000 0.00 0.00 44.23 4.85
2045 3157 5.122239 CAGAACGCATTCCAGACTTGAAATA 59.878 40.000 0.00 0.00 35.18 1.40
2064 3176 8.443937 GTGGTCTACTGAATTCAAATACAGAAC 58.556 37.037 9.88 10.17 34.88 3.01
2067 3179 7.905604 TGTGGTCTACTGAATTCAAATACAG 57.094 36.000 9.88 0.00 36.58 2.74
2142 3254 2.907910 ATGAAGACATGCGCACTTTC 57.092 45.000 14.90 14.60 35.21 2.62
2146 3258 4.093408 TCTTTTCTATGAAGACATGCGCAC 59.907 41.667 14.90 0.00 37.87 5.34
2147 3259 4.252878 TCTTTTCTATGAAGACATGCGCA 58.747 39.130 14.96 14.96 37.87 6.09
2148 3260 4.568359 TCTCTTTTCTATGAAGACATGCGC 59.432 41.667 0.00 0.00 37.87 6.09
2149 3261 6.841443 ATCTCTTTTCTATGAAGACATGCG 57.159 37.500 0.00 0.00 37.87 4.73
2197 3311 4.219115 GAGTGGGAGATATCAACCTCAGA 58.781 47.826 14.49 0.00 0.00 3.27
2217 3331 3.312421 TCAACCTCTCTTTTGTTTGCGAG 59.688 43.478 0.00 0.00 0.00 5.03
2304 3426 6.983890 GGAAACACTTGATAAAGGCAAAAGAA 59.016 34.615 0.00 0.00 0.00 2.52
2335 3479 7.068348 AGAGACTAGCAAAATCATCTACCGTTA 59.932 37.037 0.00 0.00 0.00 3.18
2366 3510 4.580580 GCTAAATTGGCAAGGTAGCACTAT 59.419 41.667 27.28 0.00 37.66 2.12
2457 3601 2.794910 CGTATGTTCTGGGAATGTAGCG 59.205 50.000 0.00 0.00 0.00 4.26
2644 3831 4.225042 TCTGGTGCTCTGTACCATAATGTT 59.775 41.667 7.89 0.00 46.31 2.71
2731 3918 2.488204 TCTGATTCACCATTTCGGCA 57.512 45.000 0.00 0.00 39.03 5.69
2816 4003 7.829211 AGCTTAAAGCAAGACCATACAAGATTA 59.171 33.333 0.00 0.00 45.56 1.75
2825 4012 4.013050 GGAAGAGCTTAAAGCAAGACCAT 58.987 43.478 0.00 0.00 45.56 3.55
2858 4045 3.367395 GGCAACCAAGATTAGCTGTTTCC 60.367 47.826 0.00 0.00 0.00 3.13
2890 4077 4.710865 TGCCCATAATTCTGCATGAAAGAA 59.289 37.500 12.15 12.15 38.29 2.52
2891 4078 4.098349 GTGCCCATAATTCTGCATGAAAGA 59.902 41.667 0.00 0.00 38.29 2.52
3024 4211 7.095229 GGCAACTTCAGATTTTAACCCATTTTC 60.095 37.037 0.00 0.00 0.00 2.29
3029 4217 3.254657 CGGCAACTTCAGATTTTAACCCA 59.745 43.478 0.00 0.00 0.00 4.51
3088 4276 7.802738 TGCACAATAACTGTACACAACTAATC 58.197 34.615 0.00 0.00 36.10 1.75
3102 4290 5.312895 TCACCATACACTTGCACAATAACT 58.687 37.500 0.00 0.00 0.00 2.24
3173 4361 0.694771 ATCCTGCAGCAAACTCCTCA 59.305 50.000 8.66 0.00 0.00 3.86
3216 4404 4.104738 AGAAGATCAAGTCCCAAAGGTTCA 59.895 41.667 0.00 0.00 0.00 3.18
3425 4614 4.226427 TCACAGCAATAGAGGCAGAAAT 57.774 40.909 0.00 0.00 0.00 2.17
3448 4637 7.230510 ACAGGAATACAAATAAGCACAGACAAA 59.769 33.333 0.00 0.00 0.00 2.83
3465 4654 4.515191 TCAAGACTGCAACAACAGGAATAC 59.485 41.667 0.00 0.00 42.21 1.89
3552 4748 8.548721 CAACTTCAGTTTGTACGACTAAGATTT 58.451 33.333 16.23 6.78 35.83 2.17
3553 4749 7.307219 GCAACTTCAGTTTGTACGACTAAGATT 60.307 37.037 16.23 9.63 35.83 2.40
3554 4750 6.145696 GCAACTTCAGTTTGTACGACTAAGAT 59.854 38.462 16.23 8.63 35.83 2.40
3556 4752 5.333111 GGCAACTTCAGTTTGTACGACTAAG 60.333 44.000 1.85 8.28 35.83 2.18
3557 4753 4.508861 GGCAACTTCAGTTTGTACGACTAA 59.491 41.667 1.85 0.00 35.83 2.24
3560 4756 2.610374 TGGCAACTTCAGTTTGTACGAC 59.390 45.455 0.00 0.00 35.83 4.34
3561 4757 2.907634 TGGCAACTTCAGTTTGTACGA 58.092 42.857 0.00 0.00 35.83 3.43
3562 4758 3.896648 ATGGCAACTTCAGTTTGTACG 57.103 42.857 0.00 0.00 35.83 3.67
3764 4962 7.288810 TCATATACTCATGACTGCACATGTA 57.711 36.000 14.84 4.31 45.21 2.29
3766 4964 7.603024 AGAATCATATACTCATGACTGCACATG 59.397 37.037 10.31 10.31 46.01 3.21
3767 4965 7.677892 AGAATCATATACTCATGACTGCACAT 58.322 34.615 0.00 0.00 37.74 3.21
3873 5173 1.064654 GCAGTTCGGGCATTGATTCTC 59.935 52.381 0.00 0.00 0.00 2.87
3927 5227 1.614413 GGGGACATGATCTACGAGGAC 59.386 57.143 0.00 0.00 0.00 3.85
3941 5241 0.116342 TTACAGAGGAGCAGGGGACA 59.884 55.000 0.00 0.00 0.00 4.02
3942 5242 1.276622 TTTACAGAGGAGCAGGGGAC 58.723 55.000 0.00 0.00 0.00 4.46
3944 5244 4.164221 TCTTAATTTACAGAGGAGCAGGGG 59.836 45.833 0.00 0.00 0.00 4.79
3980 5280 1.480137 AGGATTCAGGAAGCTGTCGAG 59.520 52.381 0.00 0.00 0.00 4.04
3999 5299 2.262915 GAGCACACAGTCCGGGAG 59.737 66.667 0.00 0.00 0.00 4.30
4001 5301 2.397413 AAAGGAGCACACAGTCCGGG 62.397 60.000 0.00 0.00 37.97 5.73
4002 5302 0.951040 GAAAGGAGCACACAGTCCGG 60.951 60.000 0.00 0.00 37.97 5.14
4003 5303 0.034059 AGAAAGGAGCACACAGTCCG 59.966 55.000 0.00 0.00 37.97 4.79
4004 5304 1.346068 AGAGAAAGGAGCACACAGTCC 59.654 52.381 0.00 0.00 0.00 3.85
4005 5305 2.611722 GGAGAGAAAGGAGCACACAGTC 60.612 54.545 0.00 0.00 0.00 3.51
4071 5371 3.083997 GGGTGGATCAGGAGGCGT 61.084 66.667 0.00 0.00 0.00 5.68
4099 5399 5.305128 TCAGGATCTTTTCAATTTGCTTGGT 59.695 36.000 0.00 0.00 35.43 3.67
4106 5407 6.127423 CCAGAGCATCAGGATCTTTTCAATTT 60.127 38.462 0.00 0.00 46.05 1.82
4115 5418 1.719529 CTCCCAGAGCATCAGGATCT 58.280 55.000 0.00 0.00 46.05 2.75
4145 5448 7.510407 TGTCCATATAAATACGGGTGAAATCA 58.490 34.615 0.00 0.00 0.00 2.57
4152 5455 5.620654 CGTCGATGTCCATATAAATACGGGT 60.621 44.000 0.00 0.00 0.00 5.28
4370 5673 3.291101 GACGTACCAGAGCGCCCAA 62.291 63.158 2.29 0.00 0.00 4.12
4419 5722 6.812656 TGTCATCGCCGTTATTTAAAACTAGA 59.187 34.615 0.00 0.00 0.00 2.43
4423 5726 7.693120 TGTAATGTCATCGCCGTTATTTAAAAC 59.307 33.333 0.00 0.00 0.00 2.43
4424 5727 7.749808 TGTAATGTCATCGCCGTTATTTAAAA 58.250 30.769 0.00 0.00 0.00 1.52
4425 5728 7.304919 TGTAATGTCATCGCCGTTATTTAAA 57.695 32.000 0.00 0.00 0.00 1.52
4426 5729 6.905544 TGTAATGTCATCGCCGTTATTTAA 57.094 33.333 0.00 0.00 0.00 1.52
4427 5730 6.883129 CATGTAATGTCATCGCCGTTATTTA 58.117 36.000 0.00 0.00 40.20 1.40
4428 5731 5.747565 CATGTAATGTCATCGCCGTTATTT 58.252 37.500 0.00 0.00 40.20 1.40
4429 5732 5.342806 CATGTAATGTCATCGCCGTTATT 57.657 39.130 0.00 0.00 40.20 1.40
4430 5733 4.990543 CATGTAATGTCATCGCCGTTAT 57.009 40.909 0.00 0.00 40.20 1.89
4447 5750 3.932545 TCAATTTAGCGCCAAACATGT 57.067 38.095 2.29 0.00 0.00 3.21
4469 5772 3.119637 GGCACCATTTAGCGTGTTACAAT 60.120 43.478 0.00 0.00 32.40 2.71
4472 5775 1.807742 TGGCACCATTTAGCGTGTTAC 59.192 47.619 0.00 0.00 32.40 2.50
4475 5778 2.288666 CTATGGCACCATTTAGCGTGT 58.711 47.619 7.63 0.00 37.82 4.49
4520 5823 4.513442 GGCCTCACACTAAACACATCATA 58.487 43.478 0.00 0.00 0.00 2.15
4522 5825 2.552155 GGGCCTCACACTAAACACATCA 60.552 50.000 0.84 0.00 0.00 3.07
4527 5830 2.910319 ACATAGGGCCTCACACTAAACA 59.090 45.455 10.74 0.00 0.00 2.83
4567 5870 0.391661 TCACTTTCAGGCCTCGATGC 60.392 55.000 0.00 3.83 0.00 3.91
4568 5871 2.005451 CTTCACTTTCAGGCCTCGATG 58.995 52.381 0.00 0.00 0.00 3.84
4569 5872 1.677217 GCTTCACTTTCAGGCCTCGAT 60.677 52.381 0.00 0.00 0.00 3.59
4570 5873 0.320771 GCTTCACTTTCAGGCCTCGA 60.321 55.000 0.00 0.57 0.00 4.04
4571 5874 1.630244 CGCTTCACTTTCAGGCCTCG 61.630 60.000 0.00 0.00 0.00 4.63
4572 5875 0.603975 ACGCTTCACTTTCAGGCCTC 60.604 55.000 0.00 0.00 0.00 4.70
4573 5876 0.603975 GACGCTTCACTTTCAGGCCT 60.604 55.000 0.00 0.00 0.00 5.19
4574 5877 1.869690 GACGCTTCACTTTCAGGCC 59.130 57.895 0.00 0.00 0.00 5.19
4575 5878 1.493311 CGACGCTTCACTTTCAGGC 59.507 57.895 0.00 0.00 0.00 4.85
4576 5879 1.493311 GCGACGCTTCACTTTCAGG 59.507 57.895 13.73 0.00 0.00 3.86
4577 5880 0.946221 AGGCGACGCTTCACTTTCAG 60.946 55.000 20.77 0.00 0.00 3.02
4578 5881 0.531974 AAGGCGACGCTTCACTTTCA 60.532 50.000 20.77 0.00 0.00 2.69
4579 5882 0.110644 CAAGGCGACGCTTCACTTTC 60.111 55.000 20.77 0.00 0.00 2.62
4580 5883 0.531974 TCAAGGCGACGCTTCACTTT 60.532 50.000 20.77 2.48 0.00 2.66
4581 5884 0.531974 TTCAAGGCGACGCTTCACTT 60.532 50.000 20.77 11.39 0.00 3.16
4582 5885 0.946221 CTTCAAGGCGACGCTTCACT 60.946 55.000 20.77 5.04 0.00 3.41
4583 5886 1.222115 ACTTCAAGGCGACGCTTCAC 61.222 55.000 20.77 2.37 0.00 3.18
4584 5887 0.944311 GACTTCAAGGCGACGCTTCA 60.944 55.000 20.77 0.00 0.00 3.02
4585 5888 0.944311 TGACTTCAAGGCGACGCTTC 60.944 55.000 20.77 3.61 0.00 3.86
4586 5889 0.320771 ATGACTTCAAGGCGACGCTT 60.321 50.000 20.77 9.77 0.00 4.68
4587 5890 0.530744 TATGACTTCAAGGCGACGCT 59.469 50.000 20.77 2.64 0.00 5.07
4588 5891 0.924090 CTATGACTTCAAGGCGACGC 59.076 55.000 12.43 12.43 0.00 5.19
4589 5892 1.135083 ACCTATGACTTCAAGGCGACG 60.135 52.381 0.00 0.00 33.42 5.12
4590 5893 2.094182 TCACCTATGACTTCAAGGCGAC 60.094 50.000 0.00 0.00 33.42 5.19
4591 5894 2.166459 CTCACCTATGACTTCAAGGCGA 59.834 50.000 0.00 3.99 33.42 5.54
4592 5895 2.544685 CTCACCTATGACTTCAAGGCG 58.455 52.381 0.00 0.00 33.42 5.52
4593 5896 2.911484 CCTCACCTATGACTTCAAGGC 58.089 52.381 0.00 0.00 33.42 4.35
4594 5897 2.420687 GGCCTCACCTATGACTTCAAGG 60.421 54.545 0.00 6.13 36.42 3.61
4595 5898 2.420687 GGGCCTCACCTATGACTTCAAG 60.421 54.545 0.84 0.00 39.10 3.02
4596 5899 1.559682 GGGCCTCACCTATGACTTCAA 59.440 52.381 0.84 0.00 39.10 2.69
4597 5900 1.204146 GGGCCTCACCTATGACTTCA 58.796 55.000 0.84 0.00 39.10 3.02
4598 5901 0.470341 GGGGCCTCACCTATGACTTC 59.530 60.000 0.84 0.00 39.10 3.01
4599 5902 0.044855 AGGGGCCTCACCTATGACTT 59.955 55.000 4.79 0.00 36.32 3.01
4600 5903 0.399233 GAGGGGCCTCACCTATGACT 60.399 60.000 4.79 0.00 42.31 3.41
4601 5904 1.411651 GGAGGGGCCTCACCTATGAC 61.412 65.000 12.63 0.00 44.40 3.06
4602 5905 1.074471 GGAGGGGCCTCACCTATGA 60.074 63.158 12.63 0.00 44.40 2.15
4603 5906 0.988145 TTGGAGGGGCCTCACCTATG 60.988 60.000 20.85 0.00 44.40 2.23
4604 5907 0.253630 TTTGGAGGGGCCTCACCTAT 60.254 55.000 20.85 0.00 44.40 2.57
4605 5908 1.162329 TTTGGAGGGGCCTCACCTA 59.838 57.895 20.85 10.21 44.40 3.08
4606 5909 2.121506 TTTGGAGGGGCCTCACCT 60.122 61.111 20.85 9.95 44.40 4.00
4607 5910 2.035783 GTTTGGAGGGGCCTCACC 59.964 66.667 13.05 13.05 44.40 4.02
4783 6114 4.140805 AGGTGCTAAGATCATACTCCCTCT 60.141 45.833 0.00 0.00 0.00 3.69
4830 6161 1.692411 GCAAGGTTGGTGTTCTCCTT 58.308 50.000 0.00 0.00 40.38 3.36
4847 6178 2.184020 CTCCGATGGTGGTGAAGGCA 62.184 60.000 0.00 0.00 0.00 4.75
4911 6242 0.320697 GTCCAGGTGCTTACTTCGGT 59.679 55.000 0.00 0.00 0.00 4.69
4913 6244 1.798813 GTTGTCCAGGTGCTTACTTCG 59.201 52.381 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.