Multiple sequence alignment - TraesCS6B01G104800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G104800 chr6B 100.000 2980 0 0 1 2980 84356428 84359407 0.000000e+00 5504.0
1 TraesCS6B01G104800 chr6B 81.577 1509 209 41 459 1939 84565975 84567442 0.000000e+00 1182.0
2 TraesCS6B01G104800 chr6B 81.349 1512 199 41 486 1945 82958301 82956821 0.000000e+00 1153.0
3 TraesCS6B01G104800 chr6B 84.271 1049 127 21 562 1590 83127924 83126894 0.000000e+00 989.0
4 TraesCS6B01G104800 chr6B 79.983 1154 187 29 451 1590 83139719 83138596 0.000000e+00 811.0
5 TraesCS6B01G104800 chr6B 86.372 565 51 13 1735 2286 84134546 84135097 7.110000e-166 593.0
6 TraesCS6B01G104800 chr6B 74.817 1092 188 53 530 1590 64196304 64195269 2.140000e-111 412.0
7 TraesCS6B01G104800 chr6B 83.500 400 43 13 2017 2405 82956786 82956399 4.730000e-93 351.0
8 TraesCS6B01G104800 chr6B 78.105 612 77 26 2014 2599 84492845 84493425 4.760000e-88 335.0
9 TraesCS6B01G104800 chr6B 100.000 29 0 0 2952 2980 38773263 38773291 1.000000e-03 54.7
10 TraesCS6B01G104800 chr6B 100.000 29 0 0 2952 2980 720456773 720456745 1.000000e-03 54.7
11 TraesCS6B01G104800 chrUn 92.323 2983 165 22 1 2942 153437001 153434042 0.000000e+00 4181.0
12 TraesCS6B01G104800 chrUn 91.757 2111 95 21 283 2370 153521204 153519150 0.000000e+00 2861.0
13 TraesCS6B01G104800 chrUn 82.436 1486 184 38 487 1942 26732767 26734205 0.000000e+00 1227.0
14 TraesCS6B01G104800 chrUn 81.944 1512 185 56 487 1942 143846884 143848363 0.000000e+00 1199.0
15 TraesCS6B01G104800 chrUn 81.325 1494 173 47 488 1945 26518738 26517315 0.000000e+00 1116.0
16 TraesCS6B01G104800 chrUn 84.319 1116 139 22 497 1594 26525590 26524493 0.000000e+00 1059.0
17 TraesCS6B01G104800 chrUn 79.711 1523 243 40 451 1942 26726618 26728105 0.000000e+00 1040.0
18 TraesCS6B01G104800 chrUn 79.277 1438 242 41 538 1945 26573664 26572253 0.000000e+00 953.0
19 TraesCS6B01G104800 chrUn 82.812 1088 149 23 886 1945 153494453 153493376 0.000000e+00 939.0
20 TraesCS6B01G104800 chrUn 78.384 1522 237 57 497 1942 143908236 143909741 0.000000e+00 904.0
21 TraesCS6B01G104800 chrUn 82.899 883 89 29 1735 2601 143910940 143911776 0.000000e+00 737.0
22 TraesCS6B01G104800 chrUn 92.800 375 12 4 2577 2942 153519106 153518738 2.030000e-146 529.0
23 TraesCS6B01G104800 chrUn 92.958 284 12 5 1 279 153521776 153521496 9.940000e-110 407.0
24 TraesCS6B01G104800 chrUn 79.630 594 65 23 1976 2525 143848351 143848932 2.800000e-100 375.0
25 TraesCS6B01G104800 chrUn 79.928 558 62 29 2067 2601 153493313 153492783 6.070000e-97 364.0
26 TraesCS6B01G104800 chr6A 91.834 2339 115 32 83 2386 47982935 47985232 0.000000e+00 3192.0
27 TraesCS6B01G104800 chr6A 82.105 1492 208 40 492 1942 48036639 48038112 0.000000e+00 1221.0
28 TraesCS6B01G104800 chr6A 81.295 1529 201 51 459 1945 48057024 48055539 0.000000e+00 1160.0
29 TraesCS6B01G104800 chr6A 81.354 960 132 21 488 1446 47701877 47702790 0.000000e+00 737.0
30 TraesCS6B01G104800 chr6A 80.313 894 128 34 1079 1945 48087839 48088711 1.510000e-177 632.0
31 TraesCS6B01G104800 chr6A 90.972 288 17 5 2653 2937 47985235 47985516 2.170000e-101 379.0
32 TraesCS6B01G104800 chr6A 81.069 449 54 20 1976 2405 47886065 47886501 2.210000e-86 329.0
33 TraesCS6B01G104800 chr6A 87.190 242 20 7 2067 2306 48038178 48038410 6.330000e-67 265.0
34 TraesCS6B01G104800 chr1B 94.000 50 3 0 2931 2980 566405073 566405024 3.190000e-10 76.8
35 TraesCS6B01G104800 chr5B 100.000 40 0 0 2941 2980 14757657 14757618 1.150000e-09 75.0
36 TraesCS6B01G104800 chr4A 95.455 44 2 0 2937 2980 677468947 677468990 1.480000e-08 71.3
37 TraesCS6B01G104800 chr2B 95.455 44 2 0 2937 2980 61102601 61102644 1.480000e-08 71.3
38 TraesCS6B01G104800 chr3B 100.000 29 0 0 2952 2980 18430334 18430362 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G104800 chr6B 84356428 84359407 2979 False 5504.000000 5504 100.0000 1 2980 1 chr6B.!!$F3 2979
1 TraesCS6B01G104800 chr6B 84565975 84567442 1467 False 1182.000000 1182 81.5770 459 1939 1 chr6B.!!$F5 1480
2 TraesCS6B01G104800 chr6B 83126894 83127924 1030 True 989.000000 989 84.2710 562 1590 1 chr6B.!!$R2 1028
3 TraesCS6B01G104800 chr6B 83138596 83139719 1123 True 811.000000 811 79.9830 451 1590 1 chr6B.!!$R3 1139
4 TraesCS6B01G104800 chr6B 82956399 82958301 1902 True 752.000000 1153 82.4245 486 2405 2 chr6B.!!$R5 1919
5 TraesCS6B01G104800 chr6B 84134546 84135097 551 False 593.000000 593 86.3720 1735 2286 1 chr6B.!!$F2 551
6 TraesCS6B01G104800 chr6B 64195269 64196304 1035 True 412.000000 412 74.8170 530 1590 1 chr6B.!!$R1 1060
7 TraesCS6B01G104800 chr6B 84492845 84493425 580 False 335.000000 335 78.1050 2014 2599 1 chr6B.!!$F4 585
8 TraesCS6B01G104800 chrUn 153434042 153437001 2959 True 4181.000000 4181 92.3230 1 2942 1 chrUn.!!$R4 2941
9 TraesCS6B01G104800 chrUn 153518738 153521776 3038 True 1265.666667 2861 92.5050 1 2942 3 chrUn.!!$R6 2941
10 TraesCS6B01G104800 chrUn 26732767 26734205 1438 False 1227.000000 1227 82.4360 487 1942 1 chrUn.!!$F2 1455
11 TraesCS6B01G104800 chrUn 26517315 26518738 1423 True 1116.000000 1116 81.3250 488 1945 1 chrUn.!!$R1 1457
12 TraesCS6B01G104800 chrUn 26524493 26525590 1097 True 1059.000000 1059 84.3190 497 1594 1 chrUn.!!$R2 1097
13 TraesCS6B01G104800 chrUn 26726618 26728105 1487 False 1040.000000 1040 79.7110 451 1942 1 chrUn.!!$F1 1491
14 TraesCS6B01G104800 chrUn 26572253 26573664 1411 True 953.000000 953 79.2770 538 1945 1 chrUn.!!$R3 1407
15 TraesCS6B01G104800 chrUn 143908236 143911776 3540 False 820.500000 904 80.6415 497 2601 2 chrUn.!!$F4 2104
16 TraesCS6B01G104800 chrUn 143846884 143848932 2048 False 787.000000 1199 80.7870 487 2525 2 chrUn.!!$F3 2038
17 TraesCS6B01G104800 chrUn 153492783 153494453 1670 True 651.500000 939 81.3700 886 2601 2 chrUn.!!$R5 1715
18 TraesCS6B01G104800 chr6A 47982935 47985516 2581 False 1785.500000 3192 91.4030 83 2937 2 chr6A.!!$F4 2854
19 TraesCS6B01G104800 chr6A 48055539 48057024 1485 True 1160.000000 1160 81.2950 459 1945 1 chr6A.!!$R1 1486
20 TraesCS6B01G104800 chr6A 48036639 48038410 1771 False 743.000000 1221 84.6475 492 2306 2 chr6A.!!$F5 1814
21 TraesCS6B01G104800 chr6A 47701877 47702790 913 False 737.000000 737 81.3540 488 1446 1 chr6A.!!$F1 958
22 TraesCS6B01G104800 chr6A 48087839 48088711 872 False 632.000000 632 80.3130 1079 1945 1 chr6A.!!$F3 866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 701 0.107848 CGAGCTCCCCCAAAACGTAT 60.108 55.0 8.47 0.00 0.00 3.06 F
618 951 0.470833 CCATCATCTCCCTCGTCCCT 60.471 60.0 0.00 0.00 0.00 4.20 F
1297 1774 0.535102 CAGGGTAATTAGGGCGCCTG 60.535 60.0 28.56 8.65 34.61 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 2265 1.043116 TGGGTCATACGGAGGCTCAG 61.043 60.0 17.69 15.43 0.0 3.35 R
1854 3837 1.226746 GCCGTTTCACTGCTGTACTT 58.773 50.0 0.00 0.00 0.0 2.24 R
2960 5015 0.689080 TGAGGAGGCTGGAGGATGAC 60.689 60.0 0.00 0.00 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.815962 TGTTAGCTGTGGCGTTTCAAATA 59.184 39.130 0.00 0.00 44.37 1.40
114 119 3.115554 CTGGACTGCCTTTTGTTTTTCG 58.884 45.455 0.00 0.00 34.31 3.46
129 134 6.809630 TGTTTTTCGGTTGATGATGTATCA 57.190 33.333 0.00 0.00 43.92 2.15
191 196 9.329913 CTCTTGTCATTTAAGTCGGTTATTTTG 57.670 33.333 0.00 0.00 0.00 2.44
193 198 6.383415 TGTCATTTAAGTCGGTTATTTTGGC 58.617 36.000 0.00 0.00 0.00 4.52
242 248 1.956477 ACTTTTGGTGTGGTCTGATGC 59.044 47.619 0.00 0.00 0.00 3.91
254 260 1.203523 GTCTGATGCTTCGTGTCCTCT 59.796 52.381 0.00 0.00 0.00 3.69
279 285 0.587768 TAATGCTGGCATGATTCGCG 59.412 50.000 8.91 0.00 36.68 5.87
301 597 1.862827 GAACGTGGTACTCAACGCTTT 59.137 47.619 13.60 4.74 0.00 3.51
321 617 0.385390 GGCTACATGCAAAATCCCCG 59.615 55.000 0.00 0.00 45.15 5.73
404 701 0.107848 CGAGCTCCCCCAAAACGTAT 60.108 55.000 8.47 0.00 0.00 3.06
479 800 2.364448 GGAGAAGGAGGAGGCCGT 60.364 66.667 0.00 0.00 0.00 5.68
613 946 1.070445 GGCACCATCATCTCCCTCG 59.930 63.158 0.00 0.00 0.00 4.63
618 951 0.470833 CCATCATCTCCCTCGTCCCT 60.471 60.000 0.00 0.00 0.00 4.20
915 1351 3.253838 TACGCCAACCCCCTGCTT 61.254 61.111 0.00 0.00 0.00 3.91
1127 1594 1.095228 GCCGATTTTCATGCTCCGGA 61.095 55.000 2.93 2.93 39.31 5.14
1179 1647 3.006323 GGAGCATCATCTTCCGTCATAGT 59.994 47.826 0.00 0.00 36.25 2.12
1297 1774 0.535102 CAGGGTAATTAGGGCGCCTG 60.535 60.000 28.56 8.65 34.61 4.85
1476 2006 1.618343 TCAGCTCCACAAACTCGATGA 59.382 47.619 0.00 0.00 0.00 2.92
1585 2115 5.574891 AAGCTCTATGTCACTGTGAGTAG 57.425 43.478 11.41 15.42 0.00 2.57
1658 2227 1.707427 ACATATGCCTCCCTTCCCATC 59.293 52.381 1.58 0.00 0.00 3.51
1690 2265 4.514441 TCGTCGATGTAGGGATAAGAGAAC 59.486 45.833 4.21 0.00 0.00 3.01
1957 3940 8.157476 TGAATTCAGGATTAGCCCTACTAAATC 58.843 37.037 3.38 0.00 43.99 2.17
2003 3986 7.397476 TGAGTTCAGGAATACTTCATACAGACT 59.603 37.037 0.00 0.00 0.00 3.24
2010 4002 7.013846 AGGAATACTTCATACAGACTGAGTAGC 59.986 40.741 10.08 3.13 0.00 3.58
2012 4004 5.317733 ACTTCATACAGACTGAGTAGCAC 57.682 43.478 10.08 0.00 0.00 4.40
2039 4031 3.833650 TCCATGATTTGTCAGTGGCAAAT 59.166 39.130 30.61 30.61 45.73 2.32
2063 4057 3.445096 CCTTCAAAAAGCCATAGTCTGGG 59.555 47.826 0.00 0.00 46.06 4.45
2271 4273 6.346838 GCAAAAATAGTGCACTGTGGAAATTC 60.347 38.462 29.57 7.03 41.80 2.17
2347 4359 1.858739 GCAGGTGGTAACCCCATCCA 61.859 60.000 0.00 0.00 46.55 3.41
2348 4360 0.926293 CAGGTGGTAACCCCATCCAT 59.074 55.000 0.00 0.00 46.55 3.41
2413 4451 0.036732 TGCCTAAGCTGTGTGGGAAG 59.963 55.000 0.00 0.00 40.80 3.46
2426 4464 5.626142 TGTGTGGGAAGCTTAATTGTCTTA 58.374 37.500 0.00 0.00 0.00 2.10
2485 4529 8.207521 TGATTTGATCTTTTGCGTACATATCA 57.792 30.769 0.00 0.00 0.00 2.15
2667 4713 4.065088 TGAGTAGCATCTTGTGTTGAACC 58.935 43.478 0.00 0.00 0.00 3.62
2675 4721 7.271511 AGCATCTTGTGTTGAACCAATTTTAA 58.728 30.769 0.00 0.00 0.00 1.52
2814 4868 8.514594 CCAGAGAGATTTAGTTTTTATGCACAA 58.485 33.333 0.00 0.00 0.00 3.33
2876 4930 2.979678 CACTGGGTGGGTAGGCTATATT 59.020 50.000 0.00 0.00 0.00 1.28
2877 4931 4.140639 TCACTGGGTGGGTAGGCTATATTA 60.141 45.833 0.00 0.00 33.87 0.98
2878 4932 4.783227 CACTGGGTGGGTAGGCTATATTAT 59.217 45.833 0.00 0.00 0.00 1.28
2879 4933 5.962031 CACTGGGTGGGTAGGCTATATTATA 59.038 44.000 0.00 0.00 0.00 0.98
2880 4934 6.615726 CACTGGGTGGGTAGGCTATATTATAT 59.384 42.308 0.00 0.00 0.00 0.86
2892 4946 6.098982 AGGCTATATTATATGGTGTGGAGCTC 59.901 42.308 4.71 4.71 0.00 4.09
2921 4975 6.487331 TGTTTTTAGAGCGGAAGTATTGGAAA 59.513 34.615 0.00 0.00 0.00 3.13
2922 4976 7.013464 TGTTTTTAGAGCGGAAGTATTGGAAAA 59.987 33.333 0.00 0.00 0.00 2.29
2947 5002 9.701098 AAAAATGTACTACTAGTGAATCGTGAA 57.299 29.630 5.39 0.00 0.00 3.18
2948 5003 9.701098 AAAATGTACTACTAGTGAATCGTGAAA 57.299 29.630 5.39 0.00 0.00 2.69
2949 5004 9.871238 AAATGTACTACTAGTGAATCGTGAAAT 57.129 29.630 5.39 0.00 0.00 2.17
2952 5007 9.999009 TGTACTACTAGTGAATCGTGAAATAAG 57.001 33.333 5.39 0.00 0.00 1.73
2953 5008 9.448294 GTACTACTAGTGAATCGTGAAATAAGG 57.552 37.037 5.39 0.00 0.00 2.69
2954 5009 8.289939 ACTACTAGTGAATCGTGAAATAAGGA 57.710 34.615 5.39 0.00 0.00 3.36
2955 5010 8.915036 ACTACTAGTGAATCGTGAAATAAGGAT 58.085 33.333 5.39 0.00 0.00 3.24
2956 5011 9.186323 CTACTAGTGAATCGTGAAATAAGGATG 57.814 37.037 5.39 0.00 0.00 3.51
2957 5012 5.741388 AGTGAATCGTGAAATAAGGATGC 57.259 39.130 0.00 0.00 0.00 3.91
2958 5013 4.576463 AGTGAATCGTGAAATAAGGATGCC 59.424 41.667 0.00 0.00 0.00 4.40
2959 5014 3.559655 TGAATCGTGAAATAAGGATGCCG 59.440 43.478 0.00 0.00 0.00 5.69
2960 5015 1.948104 TCGTGAAATAAGGATGCCGG 58.052 50.000 0.00 0.00 0.00 6.13
2961 5016 1.208535 TCGTGAAATAAGGATGCCGGT 59.791 47.619 1.90 0.00 0.00 5.28
2962 5017 1.597663 CGTGAAATAAGGATGCCGGTC 59.402 52.381 1.90 0.00 0.00 4.79
2963 5018 2.639065 GTGAAATAAGGATGCCGGTCA 58.361 47.619 1.90 1.38 0.00 4.02
2964 5019 3.214328 GTGAAATAAGGATGCCGGTCAT 58.786 45.455 10.59 10.59 38.32 3.06
2970 5025 3.230284 GATGCCGGTCATCCTCCA 58.770 61.111 21.35 2.53 44.54 3.86
2971 5026 1.070445 GATGCCGGTCATCCTCCAG 59.930 63.158 21.35 0.00 44.54 3.86
2972 5027 3.112205 ATGCCGGTCATCCTCCAGC 62.112 63.158 1.90 0.00 0.00 4.85
2973 5028 4.554036 GCCGGTCATCCTCCAGCC 62.554 72.222 1.90 0.00 0.00 4.85
2974 5029 2.765807 CCGGTCATCCTCCAGCCT 60.766 66.667 0.00 0.00 0.00 4.58
2975 5030 2.801631 CCGGTCATCCTCCAGCCTC 61.802 68.421 0.00 0.00 0.00 4.70
2976 5031 2.801631 CGGTCATCCTCCAGCCTCC 61.802 68.421 0.00 0.00 0.00 4.30
2977 5032 1.383803 GGTCATCCTCCAGCCTCCT 60.384 63.158 0.00 0.00 0.00 3.69
2978 5033 1.406860 GGTCATCCTCCAGCCTCCTC 61.407 65.000 0.00 0.00 0.00 3.71
2979 5034 0.689080 GTCATCCTCCAGCCTCCTCA 60.689 60.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.601903 TGAAACGCCACAGCTAACAAG 59.398 47.619 0.00 0.00 36.60 3.16
73 74 5.048083 TCCAGTAAACAAACTTCCATGCATC 60.048 40.000 0.00 0.00 0.00 3.91
74 75 4.832266 TCCAGTAAACAAACTTCCATGCAT 59.168 37.500 0.00 0.00 0.00 3.96
129 134 4.040952 ACCAAGAGTGACAGTAGCAGAATT 59.959 41.667 0.00 0.00 0.00 2.17
191 196 2.355481 ACGAACTGAACCGTCGCC 60.355 61.111 0.00 0.00 33.23 5.54
242 248 5.352569 AGCATTAAATCAAGAGGACACGAAG 59.647 40.000 0.00 0.00 0.00 3.79
254 260 5.283294 CGAATCATGCCAGCATTAAATCAA 58.717 37.500 1.47 0.00 33.90 2.57
279 285 0.505655 GCGTTGAGTACCACGTTCAC 59.494 55.000 10.51 0.00 0.00 3.18
301 597 1.484038 GGGGATTTTGCATGTAGCCA 58.516 50.000 0.00 0.00 44.83 4.75
321 617 2.271800 CACACTCTCCCGCATTAACTC 58.728 52.381 0.00 0.00 0.00 3.01
456 777 0.984961 CCTCCTCCTTCTCCATGGCA 60.985 60.000 6.96 0.00 0.00 4.92
613 946 2.582978 GCCGTCCTTGGTAGGGAC 59.417 66.667 3.08 3.08 46.93 4.46
915 1351 3.621225 CGGAGCACTGATCCCAGA 58.379 61.111 7.77 0.00 43.02 3.86
1127 1594 0.311165 CGAGATAACACGGAGGCGAT 59.689 55.000 0.00 0.00 0.00 4.58
1297 1774 2.273619 AGGGCCCAATATCTCCAGATC 58.726 52.381 27.56 0.00 36.05 2.75
1476 2006 2.099756 GAGCAAAAACCTTCACAGTGCT 59.900 45.455 0.00 0.00 43.20 4.40
1585 2115 6.974965 AGGTCAAACAAATGAGAGAAATGAC 58.025 36.000 0.00 0.00 35.20 3.06
1658 2227 1.840741 CTACATCGACGAAACTGCGAG 59.159 52.381 0.00 0.00 37.48 5.03
1690 2265 1.043116 TGGGTCATACGGAGGCTCAG 61.043 60.000 17.69 15.43 0.00 3.35
1854 3837 1.226746 GCCGTTTCACTGCTGTACTT 58.773 50.000 0.00 0.00 0.00 2.24
1927 3910 3.947834 AGGGCTAATCCTGAATTCAAACG 59.052 43.478 9.88 0.00 35.47 3.60
1957 3940 4.067192 TCAACACATGTCAATCAGTCCAG 58.933 43.478 0.00 0.00 0.00 3.86
2003 3986 5.830799 AATCATGGATATGGTGCTACTCA 57.169 39.130 0.00 0.00 34.97 3.41
2010 4002 5.009310 CCACTGACAAATCATGGATATGGTG 59.991 44.000 0.00 0.00 36.43 4.17
2012 4004 4.022589 GCCACTGACAAATCATGGATATGG 60.023 45.833 0.00 0.00 36.43 2.74
2039 4031 4.335416 CAGACTATGGCTTTTTGAAGGGA 58.665 43.478 0.00 0.00 0.00 4.20
2063 4057 3.248266 GCAATCTTCAGGCATCAACAAC 58.752 45.455 0.00 0.00 0.00 3.32
2064 4058 2.892215 TGCAATCTTCAGGCATCAACAA 59.108 40.909 0.00 0.00 31.58 2.83
2065 4059 2.229543 GTGCAATCTTCAGGCATCAACA 59.770 45.455 0.00 0.00 40.05 3.33
2284 4293 1.263217 CGGCAGTAATATTTCGCACCC 59.737 52.381 0.00 0.00 0.00 4.61
2286 4295 3.936902 TTCGGCAGTAATATTTCGCAC 57.063 42.857 0.00 0.00 0.00 5.34
2347 4359 4.107127 AGACCATAGGAGTAGCTTCGAT 57.893 45.455 0.00 0.00 0.00 3.59
2348 4360 3.579534 AGACCATAGGAGTAGCTTCGA 57.420 47.619 0.00 0.00 0.00 3.71
2485 4529 8.449251 ACCTTTTGCAAATATCAAACAAATGT 57.551 26.923 13.65 0.00 33.66 2.71
2667 4713 6.632909 TCCAATGCTGATCCTGTTAAAATTG 58.367 36.000 0.00 0.00 0.00 2.32
2675 4721 2.662866 CCAATCCAATGCTGATCCTGT 58.337 47.619 0.00 0.00 0.00 4.00
2876 4930 4.804597 ACACTAGAGCTCCACACCATATA 58.195 43.478 10.93 0.00 0.00 0.86
2877 4931 3.647636 ACACTAGAGCTCCACACCATAT 58.352 45.455 10.93 0.00 0.00 1.78
2878 4932 3.101643 ACACTAGAGCTCCACACCATA 57.898 47.619 10.93 0.00 0.00 2.74
2879 4933 1.944177 ACACTAGAGCTCCACACCAT 58.056 50.000 10.93 0.00 0.00 3.55
2880 4934 1.717032 AACACTAGAGCTCCACACCA 58.283 50.000 10.93 0.00 0.00 4.17
2892 4946 7.201530 CCAATACTTCCGCTCTAAAAACACTAG 60.202 40.741 0.00 0.00 0.00 2.57
2921 4975 9.701098 TTCACGATTCACTAGTAGTACATTTTT 57.299 29.630 1.57 0.00 0.00 1.94
2922 4976 9.701098 TTTCACGATTCACTAGTAGTACATTTT 57.299 29.630 1.57 0.00 0.00 1.82
2933 4988 6.073548 GGCATCCTTATTTCACGATTCACTAG 60.074 42.308 0.00 0.00 0.00 2.57
2942 4997 1.597663 GACCGGCATCCTTATTTCACG 59.402 52.381 0.00 0.00 0.00 4.35
2943 4998 2.639065 TGACCGGCATCCTTATTTCAC 58.361 47.619 0.00 0.00 0.00 3.18
2944 4999 3.476552 GATGACCGGCATCCTTATTTCA 58.523 45.455 21.35 7.00 46.23 2.69
2954 5009 3.234349 CTGGAGGATGACCGGCAT 58.766 61.111 0.00 6.16 41.83 4.40
2957 5012 2.765807 AGGCTGGAGGATGACCGG 60.766 66.667 0.00 0.00 41.83 5.28
2958 5013 2.801631 GGAGGCTGGAGGATGACCG 61.802 68.421 0.00 0.00 41.83 4.79
2959 5014 1.383803 AGGAGGCTGGAGGATGACC 60.384 63.158 0.00 0.00 0.00 4.02
2960 5015 0.689080 TGAGGAGGCTGGAGGATGAC 60.689 60.000 0.00 0.00 0.00 3.06
2961 5016 1.705950 TGAGGAGGCTGGAGGATGA 59.294 57.895 0.00 0.00 0.00 2.92
2962 5017 4.388465 TGAGGAGGCTGGAGGATG 57.612 61.111 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.