Multiple sequence alignment - TraesCS6B01G104700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G104700 chr6B 100.000 3641 0 0 1 3641 84130848 84134488 0.000000e+00 6724.0
1 TraesCS6B01G104700 chr6B 77.466 1957 350 59 1047 2977 82958289 82956398 0.000000e+00 1086.0
2 TraesCS6B01G104700 chr6B 78.164 1525 237 62 1047 2555 84356925 84358369 0.000000e+00 883.0
3 TraesCS6B01G104700 chr6B 77.024 1519 259 53 1045 2552 84566003 84567442 0.000000e+00 789.0
4 TraesCS6B01G104700 chr6B 73.548 1739 321 94 980 2668 64009086 64007437 5.350000e-148 534.0
5 TraesCS6B01G104700 chr6B 90.179 112 7 3 601 709 483507634 483507524 3.790000e-30 143.0
6 TraesCS6B01G104700 chrUn 92.990 2097 117 16 808 2887 143907988 143910071 0.000000e+00 3031.0
7 TraesCS6B01G104700 chrUn 78.190 2022 317 74 974 2978 26726603 26728517 0.000000e+00 1177.0
8 TraesCS6B01G104700 chrUn 77.208 2027 350 76 992 2978 143846836 143848790 0.000000e+00 1081.0
9 TraesCS6B01G104700 chrUn 77.205 2018 344 72 974 2978 26573769 26571855 0.000000e+00 1072.0
10 TraesCS6B01G104700 chrUn 77.454 1406 260 41 1485 2873 98357302 98355937 0.000000e+00 787.0
11 TraesCS6B01G104700 chrUn 77.117 1464 268 43 1109 2563 153390165 153391570 0.000000e+00 785.0
12 TraesCS6B01G104700 chrUn 76.150 1631 287 60 1105 2718 153378180 153379725 0.000000e+00 763.0
13 TraesCS6B01G104700 chrUn 76.614 1270 224 43 1293 2552 331176320 331177526 1.840000e-177 632.0
14 TraesCS6B01G104700 chrUn 88.825 519 23 17 3002 3513 143910159 143910649 4.020000e-169 604.0
15 TraesCS6B01G104700 chrUn 77.622 858 142 36 1090 1940 153409838 153409024 3.290000e-130 475.0
16 TraesCS6B01G104700 chrUn 82.188 320 37 14 2999 3316 26728591 26728892 1.300000e-64 257.0
17 TraesCS6B01G104700 chrUn 87.793 213 25 1 1047 1258 26732778 26732990 7.810000e-62 248.0
18 TraesCS6B01G104700 chrUn 94.483 145 7 1 3497 3641 143910739 143910882 4.730000e-54 222.0
19 TraesCS6B01G104700 chrUn 90.083 121 9 1 86 206 143906914 143907031 1.750000e-33 154.0
20 TraesCS6B01G104700 chrUn 87.640 89 9 1 1 89 143906550 143906636 6.430000e-18 102.0
21 TraesCS6B01G104700 chrUn 95.455 44 2 0 2944 2987 143910070 143910113 1.810000e-08 71.3
22 TraesCS6B01G104700 chr6A 88.115 1952 164 31 941 2887 47956020 47957908 0.000000e+00 2257.0
23 TraesCS6B01G104700 chr6A 77.018 2019 354 72 1000 2977 47884553 47886502 0.000000e+00 1057.0
24 TraesCS6B01G104700 chr6A 76.554 1915 348 62 980 2872 48036570 48038405 0.000000e+00 955.0
25 TraesCS6B01G104700 chr6A 77.157 1576 278 55 1101 2654 48056951 48055436 0.000000e+00 841.0
26 TraesCS6B01G104700 chr6A 84.496 516 27 23 3002 3513 47957997 47958463 9.210000e-126 460.0
27 TraesCS6B01G104700 chr6A 79.425 452 81 10 2216 2658 42343029 42343477 3.530000e-80 309.0
28 TraesCS6B01G104700 chr6A 79.204 452 83 9 2216 2658 42509149 42509598 1.640000e-78 303.0
29 TraesCS6B01G104700 chr6A 79.249 453 81 11 2216 2658 42630377 42630826 1.640000e-78 303.0
30 TraesCS6B01G104700 chr6A 87.907 215 24 2 1047 1259 47701887 47702101 6.040000e-63 252.0
31 TraesCS6B01G104700 chr6A 89.677 155 14 2 3488 3641 47958543 47958696 2.870000e-46 196.0
32 TraesCS6B01G104700 chr6A 93.333 45 2 1 2944 2987 47957907 47957951 8.440000e-07 65.8
33 TraesCS6B01G104700 chr7B 76.266 1521 249 71 1490 2978 607928184 607929624 0.000000e+00 706.0
34 TraesCS6B01G104700 chr7B 91.018 334 18 5 278 599 443082097 443081764 1.200000e-119 440.0
35 TraesCS6B01G104700 chr7B 91.964 112 6 2 601 709 683945030 683945141 1.750000e-33 154.0
36 TraesCS6B01G104700 chr5D 91.716 338 13 5 280 602 429048848 429048511 4.290000e-124 455.0
37 TraesCS6B01G104700 chr5D 91.818 330 13 3 286 601 35155175 35154846 7.170000e-122 448.0
38 TraesCS6B01G104700 chr5D 90.560 339 15 5 287 610 162413104 162413440 2.010000e-117 433.0
39 TraesCS6B01G104700 chr5D 89.174 351 20 7 286 620 447990373 447990025 4.350000e-114 422.0
40 TraesCS6B01G104700 chr2D 91.471 340 14 4 280 604 14100850 14100511 1.540000e-123 453.0
41 TraesCS6B01G104700 chr2D 97.727 44 0 1 667 709 547237955 547237998 1.400000e-09 75.0
42 TraesCS6B01G104700 chr7D 90.725 345 17 3 281 611 548476579 548476236 2.580000e-121 446.0
43 TraesCS6B01G104700 chr7D 90.116 344 14 8 276 601 116884455 116884796 2.600000e-116 429.0
44 TraesCS6B01G104700 chr1B 91.071 336 16 3 280 601 171042974 171043309 3.340000e-120 442.0
45 TraesCS6B01G104700 chr3A 90.028 351 20 3 276 612 153774020 153773671 1.200000e-119 440.0
46 TraesCS6B01G104700 chr3B 90.379 343 17 4 280 607 797669954 797669613 1.550000e-118 436.0
47 TraesCS6B01G104700 chr3B 90.379 343 16 6 288 615 477330144 477330484 5.580000e-118 435.0
48 TraesCS6B01G104700 chr3B 92.857 112 5 2 601 709 402462900 402463011 3.760000e-35 159.0
49 TraesCS6B01G104700 chr3B 92.857 112 5 2 601 709 793270703 793270592 3.760000e-35 159.0
50 TraesCS6B01G104700 chr1D 89.577 355 21 6 263 602 15302793 15303146 1.550000e-118 436.0
51 TraesCS6B01G104700 chr1D 91.964 112 6 2 601 709 97778650 97778539 1.750000e-33 154.0
52 TraesCS6B01G104700 chr1A 89.595 346 20 5 281 612 299633202 299632859 3.360000e-115 425.0
53 TraesCS6B01G104700 chr7A 88.793 348 24 5 286 618 428337632 428337285 2.620000e-111 412.0
54 TraesCS6B01G104700 chr3D 91.349 289 19 5 319 601 500588018 500588306 1.230000e-104 390.0
55 TraesCS6B01G104700 chr2A 84.926 272 26 12 287 550 81968870 81969134 1.000000e-65 261.0
56 TraesCS6B01G104700 chr5B 92.857 112 5 2 601 709 455277616 455277727 3.760000e-35 159.0
57 TraesCS6B01G104700 chr4D 91.964 112 6 2 601 709 375718132 375718243 1.750000e-33 154.0
58 TraesCS6B01G104700 chr4A 97.778 45 1 0 665 709 615523986 615524030 1.080000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G104700 chr6B 84130848 84134488 3640 False 6724.000000 6724 100.000000 1 3641 1 chr6B.!!$F1 3640
1 TraesCS6B01G104700 chr6B 82956398 82958289 1891 True 1086.000000 1086 77.466000 1047 2977 1 chr6B.!!$R2 1930
2 TraesCS6B01G104700 chr6B 84356925 84358369 1444 False 883.000000 883 78.164000 1047 2555 1 chr6B.!!$F2 1508
3 TraesCS6B01G104700 chr6B 84566003 84567442 1439 False 789.000000 789 77.024000 1045 2552 1 chr6B.!!$F3 1507
4 TraesCS6B01G104700 chr6B 64007437 64009086 1649 True 534.000000 534 73.548000 980 2668 1 chr6B.!!$R1 1688
5 TraesCS6B01G104700 chrUn 143846836 143848790 1954 False 1081.000000 1081 77.208000 992 2978 1 chrUn.!!$F1 1986
6 TraesCS6B01G104700 chrUn 26571855 26573769 1914 True 1072.000000 1072 77.205000 974 2978 1 chrUn.!!$R1 2004
7 TraesCS6B01G104700 chrUn 98355937 98357302 1365 True 787.000000 787 77.454000 1485 2873 1 chrUn.!!$R2 1388
8 TraesCS6B01G104700 chrUn 153390165 153391570 1405 False 785.000000 785 77.117000 1109 2563 1 chrUn.!!$F3 1454
9 TraesCS6B01G104700 chrUn 153378180 153379725 1545 False 763.000000 763 76.150000 1105 2718 1 chrUn.!!$F2 1613
10 TraesCS6B01G104700 chrUn 143906550 143910882 4332 False 697.383333 3031 91.579333 1 3641 6 chrUn.!!$F6 3640
11 TraesCS6B01G104700 chrUn 331176320 331177526 1206 False 632.000000 632 76.614000 1293 2552 1 chrUn.!!$F4 1259
12 TraesCS6B01G104700 chrUn 26726603 26732990 6387 False 560.666667 1177 82.723667 974 3316 3 chrUn.!!$F5 2342
13 TraesCS6B01G104700 chrUn 153409024 153409838 814 True 475.000000 475 77.622000 1090 1940 1 chrUn.!!$R3 850
14 TraesCS6B01G104700 chr6A 47884553 47886502 1949 False 1057.000000 1057 77.018000 1000 2977 1 chr6A.!!$F5 1977
15 TraesCS6B01G104700 chr6A 48036570 48038405 1835 False 955.000000 955 76.554000 980 2872 1 chr6A.!!$F6 1892
16 TraesCS6B01G104700 chr6A 48055436 48056951 1515 True 841.000000 841 77.157000 1101 2654 1 chr6A.!!$R1 1553
17 TraesCS6B01G104700 chr6A 47956020 47958696 2676 False 744.700000 2257 88.905250 941 3641 4 chr6A.!!$F7 2700
18 TraesCS6B01G104700 chr7B 607928184 607929624 1440 False 706.000000 706 76.266000 1490 2978 1 chr7B.!!$F1 1488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 611 0.031616 AAAGGGGCAGTTCCAAACCA 60.032 50.0 0.0 0.0 36.21 3.67 F
805 1244 0.033366 GGACAAAAACAGCCCGCATT 59.967 50.0 0.0 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1144 1812 0.192064 GGGAGGAGGGAGATGATGGA 59.808 60.0 0.00 0.00 0.00 3.41 R
2696 3526 0.314578 GACGATGCAATCTTCACGCG 60.315 55.0 3.53 3.53 40.93 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.009174 CACAAAACTTTCCATCAATTATACGGC 59.991 37.037 0.00 0.00 0.00 5.68
33 34 5.473504 ACTTTCCATCAATTATACGGCCATC 59.526 40.000 2.24 0.00 0.00 3.51
35 36 4.323417 TCCATCAATTATACGGCCATCAC 58.677 43.478 2.24 0.00 0.00 3.06
44 45 1.091537 ACGGCCATCACGTAAAATGG 58.908 50.000 15.83 15.83 43.60 3.16
53 54 7.908193 CCATCACGTAAAATGGCTTTTATAC 57.092 36.000 9.94 4.23 38.66 1.47
56 57 9.009327 CATCACGTAAAATGGCTTTTATACAAG 57.991 33.333 0.00 0.00 38.66 3.16
89 90 4.700213 GGAAGCTATTGTGGTTGCTCTAAA 59.300 41.667 0.00 0.00 34.38 1.85
110 392 2.260844 GCATTAGCATGGTAGCCTCA 57.739 50.000 4.57 0.00 41.58 3.86
118 400 2.355108 GCATGGTAGCCTCAGAGTTTGA 60.355 50.000 0.00 0.00 0.00 2.69
119 401 3.265791 CATGGTAGCCTCAGAGTTTGAC 58.734 50.000 0.00 0.00 0.00 3.18
120 402 2.325484 TGGTAGCCTCAGAGTTTGACA 58.675 47.619 0.00 0.00 0.00 3.58
161 443 4.114794 AGTTGTCACAATTCAAAAGCAGC 58.885 39.130 0.00 0.00 0.00 5.25
162 444 3.096489 TGTCACAATTCAAAAGCAGCC 57.904 42.857 0.00 0.00 0.00 4.85
171 453 3.927481 AAAAGCAGCCGCCTCCTCC 62.927 63.158 0.00 0.00 39.83 4.30
181 463 1.306568 GCCTCCTCCTGTCCTCCTT 60.307 63.158 0.00 0.00 0.00 3.36
183 465 0.338120 CCTCCTCCTGTCCTCCTTCT 59.662 60.000 0.00 0.00 0.00 2.85
196 478 7.365473 CCTGTCCTCCTTCTCAAGAAAGATTAT 60.365 40.741 0.00 0.00 33.07 1.28
199 481 6.445139 TCCTCCTTCTCAAGAAAGATTATGGT 59.555 38.462 0.00 0.00 33.07 3.55
206 488 8.783833 TCTCAAGAAAGATTATGGTTTCTCTG 57.216 34.615 0.00 1.08 41.21 3.35
207 489 8.378565 TCTCAAGAAAGATTATGGTTTCTCTGT 58.621 33.333 0.00 0.00 41.21 3.41
210 492 8.449397 CAAGAAAGATTATGGTTTCTCTGTCTG 58.551 37.037 0.00 0.00 41.21 3.51
212 494 5.426689 AGATTATGGTTTCTCTGTCTGCA 57.573 39.130 0.00 0.00 0.00 4.41
213 495 5.999044 AGATTATGGTTTCTCTGTCTGCAT 58.001 37.500 0.00 0.00 0.00 3.96
214 496 5.821470 AGATTATGGTTTCTCTGTCTGCATG 59.179 40.000 0.00 0.00 0.00 4.06
215 497 2.936919 TGGTTTCTCTGTCTGCATGT 57.063 45.000 0.00 0.00 0.00 3.21
216 498 3.213206 TGGTTTCTCTGTCTGCATGTT 57.787 42.857 0.00 0.00 0.00 2.71
217 499 4.350368 TGGTTTCTCTGTCTGCATGTTA 57.650 40.909 0.00 0.00 0.00 2.41
219 501 4.065088 GGTTTCTCTGTCTGCATGTTACA 58.935 43.478 0.00 0.00 0.00 2.41
220 502 4.153117 GGTTTCTCTGTCTGCATGTTACAG 59.847 45.833 14.41 14.41 41.58 2.74
222 504 4.607293 TCTCTGTCTGCATGTTACAGTT 57.393 40.909 17.85 0.00 41.12 3.16
223 505 5.722021 TCTCTGTCTGCATGTTACAGTTA 57.278 39.130 17.85 9.14 41.12 2.24
224 506 6.096673 TCTCTGTCTGCATGTTACAGTTAA 57.903 37.500 17.85 7.47 41.12 2.01
225 507 6.701340 TCTCTGTCTGCATGTTACAGTTAAT 58.299 36.000 17.85 0.00 41.12 1.40
227 509 8.311109 TCTCTGTCTGCATGTTACAGTTAATTA 58.689 33.333 17.85 0.00 41.12 1.40
228 510 8.840833 TCTGTCTGCATGTTACAGTTAATTAA 57.159 30.769 17.85 0.00 41.12 1.40
231 513 8.503196 TGTCTGCATGTTACAGTTAATTAAGTG 58.497 33.333 25.04 25.04 41.29 3.16
233 515 9.062524 TCTGCATGTTACAGTTAATTAAGTGTT 57.937 29.630 32.88 21.11 44.94 3.32
235 517 8.841300 TGCATGTTACAGTTAATTAAGTGTTCA 58.159 29.630 32.88 29.36 44.94 3.18
253 535 9.651913 AAGTGTTCATATCACAAAAACAAAGTT 57.348 25.926 0.00 0.00 38.16 2.66
316 598 7.675161 ACCAATATAAAAAGATCCAAAGGGG 57.325 36.000 0.00 0.00 38.37 4.79
317 599 6.099701 ACCAATATAAAAAGATCCAAAGGGGC 59.900 38.462 0.00 0.00 36.21 5.80
318 600 6.099557 CCAATATAAAAAGATCCAAAGGGGCA 59.900 38.462 0.00 0.00 36.21 5.36
319 601 6.983906 ATATAAAAAGATCCAAAGGGGCAG 57.016 37.500 0.00 0.00 36.21 4.85
320 602 2.702270 AAAAGATCCAAAGGGGCAGT 57.298 45.000 0.00 0.00 36.21 4.40
321 603 2.702270 AAAGATCCAAAGGGGCAGTT 57.298 45.000 0.00 0.00 36.21 3.16
322 604 2.222227 AAGATCCAAAGGGGCAGTTC 57.778 50.000 0.00 0.00 36.21 3.01
323 605 0.332972 AGATCCAAAGGGGCAGTTCC 59.667 55.000 0.00 0.00 36.21 3.62
324 606 0.039618 GATCCAAAGGGGCAGTTCCA 59.960 55.000 0.00 0.00 36.21 3.53
325 607 0.486879 ATCCAAAGGGGCAGTTCCAA 59.513 50.000 0.00 0.00 36.21 3.53
326 608 0.263172 TCCAAAGGGGCAGTTCCAAA 59.737 50.000 0.00 0.00 36.21 3.28
327 609 0.392706 CCAAAGGGGCAGTTCCAAAC 59.607 55.000 0.00 0.00 36.21 2.93
328 610 0.392706 CAAAGGGGCAGTTCCAAACC 59.607 55.000 0.00 0.00 36.21 3.27
329 611 0.031616 AAAGGGGCAGTTCCAAACCA 60.032 50.000 0.00 0.00 36.21 3.67
330 612 0.190815 AAGGGGCAGTTCCAAACCAT 59.809 50.000 0.00 0.00 36.21 3.55
331 613 0.251787 AGGGGCAGTTCCAAACCATC 60.252 55.000 0.00 0.00 36.21 3.51
332 614 0.251787 GGGGCAGTTCCAAACCATCT 60.252 55.000 0.00 0.00 36.21 2.90
333 615 1.177401 GGGCAGTTCCAAACCATCTC 58.823 55.000 0.00 0.00 36.21 2.75
334 616 0.804989 GGCAGTTCCAAACCATCTCG 59.195 55.000 0.00 0.00 34.01 4.04
335 617 1.610624 GGCAGTTCCAAACCATCTCGA 60.611 52.381 0.00 0.00 34.01 4.04
336 618 1.464997 GCAGTTCCAAACCATCTCGAC 59.535 52.381 0.00 0.00 0.00 4.20
337 619 2.076863 CAGTTCCAAACCATCTCGACC 58.923 52.381 0.00 0.00 0.00 4.79
338 620 1.076332 GTTCCAAACCATCTCGACCG 58.924 55.000 0.00 0.00 0.00 4.79
339 621 0.682852 TTCCAAACCATCTCGACCGT 59.317 50.000 0.00 0.00 0.00 4.83
340 622 0.245539 TCCAAACCATCTCGACCGTC 59.754 55.000 0.00 0.00 0.00 4.79
341 623 0.037697 CCAAACCATCTCGACCGTCA 60.038 55.000 0.00 0.00 0.00 4.35
342 624 1.606994 CCAAACCATCTCGACCGTCAA 60.607 52.381 0.00 0.00 0.00 3.18
343 625 2.139917 CAAACCATCTCGACCGTCAAA 58.860 47.619 0.00 0.00 0.00 2.69
344 626 2.742053 CAAACCATCTCGACCGTCAAAT 59.258 45.455 0.00 0.00 0.00 2.32
346 628 1.548719 ACCATCTCGACCGTCAAATCA 59.451 47.619 0.00 0.00 0.00 2.57
348 630 2.541346 CCATCTCGACCGTCAAATCATG 59.459 50.000 0.00 0.00 0.00 3.07
349 631 3.190079 CATCTCGACCGTCAAATCATGT 58.810 45.455 0.00 0.00 0.00 3.21
350 632 3.313012 TCTCGACCGTCAAATCATGTT 57.687 42.857 0.00 0.00 0.00 2.71
352 634 5.006153 TCTCGACCGTCAAATCATGTTAT 57.994 39.130 0.00 0.00 0.00 1.89
353 635 5.041287 TCTCGACCGTCAAATCATGTTATC 58.959 41.667 0.00 0.00 0.00 1.75
354 636 5.006153 TCGACCGTCAAATCATGTTATCT 57.994 39.130 0.00 0.00 0.00 1.98
355 637 6.038936 TCTCGACCGTCAAATCATGTTATCTA 59.961 38.462 0.00 0.00 0.00 1.98
356 638 6.206498 TCGACCGTCAAATCATGTTATCTAG 58.794 40.000 0.00 0.00 0.00 2.43
357 639 5.107837 CGACCGTCAAATCATGTTATCTAGC 60.108 44.000 0.00 0.00 0.00 3.42
359 641 4.150627 CCGTCAAATCATGTTATCTAGCGG 59.849 45.833 0.00 0.00 0.00 5.52
361 643 5.234329 CGTCAAATCATGTTATCTAGCGGTT 59.766 40.000 0.00 0.00 0.00 4.44
362 644 6.562270 CGTCAAATCATGTTATCTAGCGGTTC 60.562 42.308 0.00 0.00 0.00 3.62
363 645 6.257849 GTCAAATCATGTTATCTAGCGGTTCA 59.742 38.462 0.00 0.00 0.00 3.18
364 646 6.821160 TCAAATCATGTTATCTAGCGGTTCAA 59.179 34.615 0.00 0.00 0.00 2.69
366 648 7.807977 AATCATGTTATCTAGCGGTTCAAAT 57.192 32.000 0.00 0.00 0.00 2.32
367 649 6.844696 TCATGTTATCTAGCGGTTCAAATC 57.155 37.500 0.00 0.00 0.00 2.17
376 658 2.178474 CGGTTCAAATCGCTCCAATG 57.822 50.000 0.00 0.00 0.00 2.82
377 659 1.468520 CGGTTCAAATCGCTCCAATGT 59.531 47.619 0.00 0.00 0.00 2.71
378 660 2.095263 CGGTTCAAATCGCTCCAATGTT 60.095 45.455 0.00 0.00 0.00 2.71
379 661 3.244976 GGTTCAAATCGCTCCAATGTTG 58.755 45.455 0.00 0.00 0.00 3.33
380 662 3.057596 GGTTCAAATCGCTCCAATGTTGA 60.058 43.478 0.00 0.00 0.00 3.18
382 664 2.162208 TCAAATCGCTCCAATGTTGAGC 59.838 45.455 2.24 2.24 38.48 4.26
384 666 1.089920 ATCGCTCCAATGTTGAGCAC 58.910 50.000 12.22 0.00 41.64 4.40
385 667 0.955428 TCGCTCCAATGTTGAGCACC 60.955 55.000 12.22 0.00 41.64 5.01
388 670 1.340889 GCTCCAATGTTGAGCACCAAA 59.659 47.619 7.35 0.00 41.24 3.28
389 671 2.863704 GCTCCAATGTTGAGCACCAAAC 60.864 50.000 7.35 0.00 41.24 2.93
390 672 2.361757 CTCCAATGTTGAGCACCAAACA 59.638 45.455 0.00 0.00 36.36 2.83
392 674 2.118683 CAATGTTGAGCACCAAACACG 58.881 47.619 0.00 0.00 36.36 4.49
394 676 1.169577 TGTTGAGCACCAAACACGTT 58.830 45.000 0.00 0.00 36.36 3.99
395 677 1.542030 TGTTGAGCACCAAACACGTTT 59.458 42.857 0.00 0.00 36.36 3.60
396 678 2.747989 TGTTGAGCACCAAACACGTTTA 59.252 40.909 0.00 0.00 36.36 2.01
397 679 3.190744 TGTTGAGCACCAAACACGTTTAA 59.809 39.130 0.00 0.00 36.36 1.52
398 680 3.408288 TGAGCACCAAACACGTTTAAC 57.592 42.857 0.00 0.00 0.00 2.01
399 681 5.756694 GTTGAGCACCAAACACGTTTAACG 61.757 45.833 16.31 16.31 41.26 3.18
413 695 5.978934 CGTTTAACGCTCTAATTACCCAT 57.021 39.130 4.11 0.00 33.65 4.00
414 696 5.970879 CGTTTAACGCTCTAATTACCCATC 58.029 41.667 4.11 0.00 33.65 3.51
415 697 5.521010 CGTTTAACGCTCTAATTACCCATCA 59.479 40.000 4.11 0.00 33.65 3.07
416 698 6.509039 CGTTTAACGCTCTAATTACCCATCAC 60.509 42.308 4.11 0.00 33.65 3.06
417 699 4.755266 AACGCTCTAATTACCCATCACT 57.245 40.909 0.00 0.00 0.00 3.41
418 700 4.060038 ACGCTCTAATTACCCATCACTG 57.940 45.455 0.00 0.00 0.00 3.66
419 701 2.802816 CGCTCTAATTACCCATCACTGC 59.197 50.000 0.00 0.00 0.00 4.40
420 702 3.142174 GCTCTAATTACCCATCACTGCC 58.858 50.000 0.00 0.00 0.00 4.85
421 703 3.433598 GCTCTAATTACCCATCACTGCCA 60.434 47.826 0.00 0.00 0.00 4.92
422 704 4.747931 GCTCTAATTACCCATCACTGCCAT 60.748 45.833 0.00 0.00 0.00 4.40
423 705 5.513094 GCTCTAATTACCCATCACTGCCATA 60.513 44.000 0.00 0.00 0.00 2.74
424 706 6.702449 TCTAATTACCCATCACTGCCATAT 57.298 37.500 0.00 0.00 0.00 1.78
425 707 7.581464 GCTCTAATTACCCATCACTGCCATATA 60.581 40.741 0.00 0.00 0.00 0.86
426 708 8.392631 TCTAATTACCCATCACTGCCATATAT 57.607 34.615 0.00 0.00 0.00 0.86
428 710 6.641161 ATTACCCATCACTGCCATATATGA 57.359 37.500 14.54 0.00 0.00 2.15
429 711 4.292186 ACCCATCACTGCCATATATGAC 57.708 45.455 14.54 2.87 0.00 3.06
430 712 3.912528 ACCCATCACTGCCATATATGACT 59.087 43.478 14.54 0.00 0.00 3.41
432 714 4.019950 CCCATCACTGCCATATATGACTCA 60.020 45.833 14.54 7.94 0.00 3.41
433 715 5.513614 CCCATCACTGCCATATATGACTCAA 60.514 44.000 14.54 0.00 0.00 3.02
436 718 3.185188 CACTGCCATATATGACTCAACGC 59.815 47.826 14.54 7.50 0.00 4.84
438 720 4.280929 ACTGCCATATATGACTCAACGCTA 59.719 41.667 14.54 0.00 0.00 4.26
439 721 5.047021 ACTGCCATATATGACTCAACGCTAT 60.047 40.000 14.54 0.00 0.00 2.97
440 722 5.410924 TGCCATATATGACTCAACGCTATC 58.589 41.667 14.54 0.00 0.00 2.08
441 723 4.806247 GCCATATATGACTCAACGCTATCC 59.194 45.833 14.54 0.00 0.00 2.59
442 724 5.352284 CCATATATGACTCAACGCTATCCC 58.648 45.833 14.54 0.00 0.00 3.85
443 725 5.105351 CCATATATGACTCAACGCTATCCCA 60.105 44.000 14.54 0.00 0.00 4.37
444 726 6.407412 CCATATATGACTCAACGCTATCCCAT 60.407 42.308 14.54 0.00 0.00 4.00
445 727 2.602257 TGACTCAACGCTATCCCATG 57.398 50.000 0.00 0.00 0.00 3.66
446 728 2.107366 TGACTCAACGCTATCCCATGA 58.893 47.619 0.00 0.00 0.00 3.07
447 729 2.499693 TGACTCAACGCTATCCCATGAA 59.500 45.455 0.00 0.00 0.00 2.57
449 731 4.130118 GACTCAACGCTATCCCATGAAAT 58.870 43.478 0.00 0.00 0.00 2.17
450 732 4.130118 ACTCAACGCTATCCCATGAAATC 58.870 43.478 0.00 0.00 0.00 2.17
453 735 2.498167 ACGCTATCCCATGAAATCTGC 58.502 47.619 0.00 0.00 0.00 4.26
454 736 1.808945 CGCTATCCCATGAAATCTGCC 59.191 52.381 0.00 0.00 0.00 4.85
455 737 2.811504 CGCTATCCCATGAAATCTGCCA 60.812 50.000 0.00 0.00 0.00 4.92
456 738 3.428532 GCTATCCCATGAAATCTGCCAT 58.571 45.455 0.00 0.00 0.00 4.40
457 739 4.592942 GCTATCCCATGAAATCTGCCATA 58.407 43.478 0.00 0.00 0.00 2.74
458 740 5.198965 GCTATCCCATGAAATCTGCCATAT 58.801 41.667 0.00 0.00 0.00 1.78
459 741 6.359804 GCTATCCCATGAAATCTGCCATATA 58.640 40.000 0.00 0.00 0.00 0.86
461 743 7.504911 GCTATCCCATGAAATCTGCCATATAAT 59.495 37.037 0.00 0.00 0.00 1.28
462 744 9.417561 CTATCCCATGAAATCTGCCATATAATT 57.582 33.333 0.00 0.00 0.00 1.40
464 746 9.772605 ATCCCATGAAATCTGCCATATAATTAA 57.227 29.630 0.00 0.00 0.00 1.40
465 747 9.772605 TCCCATGAAATCTGCCATATAATTAAT 57.227 29.630 0.00 0.00 0.00 1.40
516 798 8.974060 ATTGATATCTTACCAAATACCAACGT 57.026 30.769 3.98 0.00 0.00 3.99
518 800 8.876275 TGATATCTTACCAAATACCAACGTAC 57.124 34.615 3.98 0.00 0.00 3.67
519 801 8.476447 TGATATCTTACCAAATACCAACGTACA 58.524 33.333 3.98 0.00 0.00 2.90
520 802 9.316730 GATATCTTACCAAATACCAACGTACAA 57.683 33.333 0.00 0.00 0.00 2.41
524 806 4.706035 ACCAAATACCAACGTACAACAGA 58.294 39.130 0.00 0.00 0.00 3.41
526 808 6.465948 ACCAAATACCAACGTACAACAGATA 58.534 36.000 0.00 0.00 0.00 1.98
527 809 7.107542 ACCAAATACCAACGTACAACAGATAT 58.892 34.615 0.00 0.00 0.00 1.63
528 810 8.259411 ACCAAATACCAACGTACAACAGATATA 58.741 33.333 0.00 0.00 0.00 0.86
529 811 9.268268 CCAAATACCAACGTACAACAGATATAT 57.732 33.333 0.00 0.00 0.00 0.86
535 817 8.139989 ACCAACGTACAACAGATATATCTTACC 58.860 37.037 12.75 0.00 34.22 2.85
536 818 8.358148 CCAACGTACAACAGATATATCTTACCT 58.642 37.037 12.75 1.24 34.22 3.08
582 864 6.425721 TCCTACCTAATATAAACGTGCATTGC 59.574 38.462 0.46 0.46 0.00 3.56
583 865 6.203915 CCTACCTAATATAAACGTGCATTGCA 59.796 38.462 7.38 7.38 35.60 4.08
599 881 7.172654 TGCATTGCACGTACATTATTACTAG 57.827 36.000 7.38 0.00 31.71 2.57
600 882 6.759356 TGCATTGCACGTACATTATTACTAGT 59.241 34.615 7.38 0.00 31.71 2.57
601 883 7.279090 TGCATTGCACGTACATTATTACTAGTT 59.721 33.333 7.38 0.00 31.71 2.24
631 913 9.630098 ACTAAAAGCACATATCAATTCAAGTTG 57.370 29.630 0.00 0.00 0.00 3.16
633 915 8.524870 AAAAGCACATATCAATTCAAGTTGTC 57.475 30.769 2.11 0.00 0.00 3.18
634 916 6.822667 AGCACATATCAATTCAAGTTGTCA 57.177 33.333 2.11 0.00 0.00 3.58
635 917 7.218228 AGCACATATCAATTCAAGTTGTCAA 57.782 32.000 2.11 0.00 0.00 3.18
636 918 7.660112 AGCACATATCAATTCAAGTTGTCAAA 58.340 30.769 2.11 0.00 0.00 2.69
638 920 7.148755 GCACATATCAATTCAAGTTGTCAAACC 60.149 37.037 2.11 0.00 36.94 3.27
639 921 7.866898 CACATATCAATTCAAGTTGTCAAACCA 59.133 33.333 2.11 0.00 36.94 3.67
640 922 8.420222 ACATATCAATTCAAGTTGTCAAACCAA 58.580 29.630 2.11 0.00 36.94 3.67
641 923 9.258826 CATATCAATTCAAGTTGTCAAACCAAA 57.741 29.630 2.11 0.00 36.94 3.28
643 925 7.536895 TCAATTCAAGTTGTCAAACCAAATG 57.463 32.000 2.11 0.00 36.94 2.32
644 926 7.102346 TCAATTCAAGTTGTCAAACCAAATGT 58.898 30.769 2.11 0.00 36.94 2.71
645 927 8.253810 TCAATTCAAGTTGTCAAACCAAATGTA 58.746 29.630 2.11 0.00 36.94 2.29
646 928 8.877779 CAATTCAAGTTGTCAAACCAAATGTAA 58.122 29.630 2.11 0.00 36.94 2.41
647 929 9.442047 AATTCAAGTTGTCAAACCAAATGTAAA 57.558 25.926 2.11 0.00 36.94 2.01
648 930 8.833231 TTCAAGTTGTCAAACCAAATGTAAAA 57.167 26.923 2.11 0.00 36.94 1.52
649 931 9.442047 TTCAAGTTGTCAAACCAAATGTAAAAT 57.558 25.926 2.11 0.00 36.94 1.82
650 932 9.092876 TCAAGTTGTCAAACCAAATGTAAAATC 57.907 29.630 2.11 0.00 36.94 2.17
651 933 9.097257 CAAGTTGTCAAACCAAATGTAAAATCT 57.903 29.630 0.00 0.00 36.94 2.40
653 935 7.224557 AGTTGTCAAACCAAATGTAAAATCTGC 59.775 33.333 0.00 0.00 36.94 4.26
654 936 6.577103 TGTCAAACCAAATGTAAAATCTGCA 58.423 32.000 0.00 0.00 0.00 4.41
655 937 7.044181 TGTCAAACCAAATGTAAAATCTGCAA 58.956 30.769 0.00 0.00 0.00 4.08
656 938 7.010923 TGTCAAACCAAATGTAAAATCTGCAAC 59.989 33.333 0.00 0.00 0.00 4.17
657 939 7.010923 GTCAAACCAAATGTAAAATCTGCAACA 59.989 33.333 0.00 0.00 0.00 3.33
658 940 7.714377 TCAAACCAAATGTAAAATCTGCAACAT 59.286 29.630 0.00 0.00 34.11 2.71
659 941 8.344098 CAAACCAAATGTAAAATCTGCAACATT 58.656 29.630 6.40 6.40 42.71 2.71
660 942 7.656707 ACCAAATGTAAAATCTGCAACATTC 57.343 32.000 11.51 0.00 40.66 2.67
663 945 7.148540 CCAAATGTAAAATCTGCAACATTCTGG 60.149 37.037 11.51 14.87 40.66 3.86
664 946 5.389859 TGTAAAATCTGCAACATTCTGGG 57.610 39.130 0.00 0.00 0.00 4.45
665 947 3.967332 AAAATCTGCAACATTCTGGGG 57.033 42.857 0.00 0.00 0.00 4.96
666 948 2.610438 AATCTGCAACATTCTGGGGT 57.390 45.000 0.00 0.00 0.00 4.95
667 949 2.610438 ATCTGCAACATTCTGGGGTT 57.390 45.000 0.00 0.00 0.00 4.11
668 950 1.909700 TCTGCAACATTCTGGGGTTC 58.090 50.000 0.00 0.00 0.00 3.62
669 951 1.144708 TCTGCAACATTCTGGGGTTCA 59.855 47.619 0.00 0.00 0.00 3.18
670 952 1.962807 CTGCAACATTCTGGGGTTCAA 59.037 47.619 0.00 0.00 0.00 2.69
671 953 2.564062 CTGCAACATTCTGGGGTTCAAT 59.436 45.455 0.00 0.00 0.00 2.57
672 954 2.299582 TGCAACATTCTGGGGTTCAATG 59.700 45.455 0.00 0.00 34.29 2.82
674 956 1.560505 ACATTCTGGGGTTCAATGGC 58.439 50.000 0.00 0.00 32.68 4.40
676 958 2.311542 ACATTCTGGGGTTCAATGGCTA 59.688 45.455 0.00 0.00 32.68 3.93
678 960 4.167892 ACATTCTGGGGTTCAATGGCTATA 59.832 41.667 0.00 0.00 32.68 1.31
689 1128 7.102993 GGTTCAATGGCTATAAACCAAACAAT 58.897 34.615 17.37 0.00 41.49 2.71
690 1129 8.254508 GGTTCAATGGCTATAAACCAAACAATA 58.745 33.333 17.37 0.00 41.49 1.90
692 1131 9.646427 TTCAATGGCTATAAACCAAACAATAAC 57.354 29.630 0.00 0.00 41.49 1.89
693 1132 8.807118 TCAATGGCTATAAACCAAACAATAACA 58.193 29.630 0.00 0.00 41.49 2.41
695 1134 8.996024 ATGGCTATAAACCAAACAATAACAAC 57.004 30.769 0.00 0.00 41.49 3.32
696 1135 8.184304 TGGCTATAAACCAAACAATAACAACT 57.816 30.769 0.00 0.00 33.12 3.16
699 1138 8.432359 GCTATAAACCAAACAATAACAACTTGC 58.568 33.333 0.00 0.00 0.00 4.01
701 1140 4.744795 ACCAAACAATAACAACTTGCCA 57.255 36.364 0.00 0.00 0.00 4.92
702 1141 5.091261 ACCAAACAATAACAACTTGCCAA 57.909 34.783 0.00 0.00 0.00 4.52
703 1142 5.679601 ACCAAACAATAACAACTTGCCAAT 58.320 33.333 0.00 0.00 0.00 3.16
704 1143 6.118852 ACCAAACAATAACAACTTGCCAATT 58.881 32.000 0.00 0.00 0.00 2.32
705 1144 6.601217 ACCAAACAATAACAACTTGCCAATTT 59.399 30.769 0.00 0.00 0.00 1.82
706 1145 7.121907 ACCAAACAATAACAACTTGCCAATTTT 59.878 29.630 0.00 0.00 0.00 1.82
755 1194 3.731652 TTTTGTCATGCCCTCACTTTG 57.268 42.857 0.00 0.00 0.00 2.77
756 1195 1.619654 TTGTCATGCCCTCACTTTGG 58.380 50.000 0.00 0.00 0.00 3.28
757 1196 0.478072 TGTCATGCCCTCACTTTGGT 59.522 50.000 0.00 0.00 0.00 3.67
758 1197 1.168714 GTCATGCCCTCACTTTGGTC 58.831 55.000 0.00 0.00 0.00 4.02
759 1198 0.770499 TCATGCCCTCACTTTGGTCA 59.230 50.000 0.00 0.00 0.00 4.02
760 1199 1.355381 TCATGCCCTCACTTTGGTCAT 59.645 47.619 0.00 0.00 0.00 3.06
762 1201 0.895100 TGCCCTCACTTTGGTCATGC 60.895 55.000 0.00 0.00 0.00 4.06
763 1202 1.598701 GCCCTCACTTTGGTCATGCC 61.599 60.000 0.00 0.00 37.90 4.40
788 1227 4.904241 CAATTTGGTAAGGCAAATTGGGA 58.096 39.130 9.16 0.00 46.59 4.37
789 1228 4.551702 ATTTGGTAAGGCAAATTGGGAC 57.448 40.909 0.00 0.00 0.00 4.46
790 1229 2.685106 TGGTAAGGCAAATTGGGACA 57.315 45.000 0.00 0.00 0.00 4.02
801 1240 3.849064 TGGGACAAAAACAGCCCG 58.151 55.556 0.00 0.00 43.70 6.13
802 1241 2.338620 GGGACAAAAACAGCCCGC 59.661 61.111 0.00 0.00 0.00 6.13
803 1242 2.494530 GGGACAAAAACAGCCCGCA 61.495 57.895 0.00 0.00 0.00 5.69
805 1244 0.033366 GGACAAAAACAGCCCGCATT 59.967 50.000 0.00 0.00 0.00 3.56
806 1245 1.139163 GACAAAAACAGCCCGCATTG 58.861 50.000 0.00 0.00 0.00 2.82
824 1461 3.656045 CCCACACGGCGAAACCAC 61.656 66.667 16.62 0.00 39.03 4.16
825 1462 2.590575 CCACACGGCGAAACCACT 60.591 61.111 16.62 0.00 39.03 4.00
826 1463 2.631428 CACACGGCGAAACCACTG 59.369 61.111 16.62 0.95 39.03 3.66
827 1464 1.885388 CACACGGCGAAACCACTGA 60.885 57.895 16.62 0.00 39.03 3.41
828 1465 1.594293 ACACGGCGAAACCACTGAG 60.594 57.895 16.62 0.00 39.03 3.35
829 1466 2.665185 ACGGCGAAACCACTGAGC 60.665 61.111 16.62 0.00 39.03 4.26
830 1467 2.664851 CGGCGAAACCACTGAGCA 60.665 61.111 0.00 0.00 39.03 4.26
831 1468 2.671177 CGGCGAAACCACTGAGCAG 61.671 63.158 0.00 0.00 39.03 4.24
909 1559 1.910580 GCTCCCCCATTTCCAGTCGA 61.911 60.000 0.00 0.00 0.00 4.20
981 1631 1.409427 GATCCAAATCCTCCGTCTCGT 59.591 52.381 0.00 0.00 0.00 4.18
1092 1757 4.643387 GCAAGGAGTGGCCACGGT 62.643 66.667 29.68 14.34 40.02 4.83
1144 1812 2.579201 CCGATGTCGTCCTTGGCT 59.421 61.111 1.44 0.00 37.74 4.75
1241 1909 3.326210 CGCGCCTCTCAATCTCGC 61.326 66.667 0.00 0.00 42.05 5.03
1244 1912 2.964389 GCCTCTCAATCTCGCGGC 60.964 66.667 6.13 0.00 0.00 6.53
1335 2048 1.880675 GCCGTCTCCGAGATAATCTCA 59.119 52.381 0.33 0.00 43.55 3.27
1619 2367 2.832129 AGCTCTCCTTGATGGACGTTTA 59.168 45.455 0.00 0.00 40.56 2.01
1763 2514 4.718961 GGCTTCTATTTCCATAGCTCCAA 58.281 43.478 0.00 0.00 33.43 3.53
1833 2590 8.380867 AGGTTACTAATACCTTATTATGGTGCC 58.619 37.037 10.70 0.00 43.45 5.01
1839 2599 9.601217 CTAATACCTTATTATGGTGCCTATGAC 57.399 37.037 10.70 0.00 38.42 3.06
2136 2934 3.274288 CCAGTTCTTAACATCCTCAGGC 58.726 50.000 0.00 0.00 0.00 4.85
2290 3097 3.243643 GCAGTTTCACAAACACAATGAGC 59.756 43.478 2.16 0.00 43.79 4.26
2371 3178 3.999663 CCATCTCAAGAGAGTGGTGTTTC 59.000 47.826 5.93 0.00 42.66 2.78
2432 3239 5.111293 CAGGTTCTTTGTTTTGAATGCAGT 58.889 37.500 0.00 0.00 0.00 4.40
2514 3324 8.770828 GCTTATCAACACAGTTTTCTACAAGTA 58.229 33.333 0.00 0.00 0.00 2.24
2578 3391 1.466856 TATTCGTACCGAGCACCAGT 58.533 50.000 0.00 0.00 37.14 4.00
2631 3451 2.182842 CCCGTTCAGCAGCCATAGC 61.183 63.158 0.00 0.00 40.32 2.97
2634 3454 1.026182 CGTTCAGCAGCCATAGCCAA 61.026 55.000 0.00 0.00 41.25 4.52
2657 3478 1.466856 TGATGCCTGAAGATTGCACC 58.533 50.000 0.00 0.00 37.92 5.01
2658 3487 1.272037 TGATGCCTGAAGATTGCACCA 60.272 47.619 0.00 0.00 37.92 4.17
2675 3505 3.187227 GCACCATCTTAGTGTCTTGTGTG 59.813 47.826 0.00 0.00 37.56 3.82
2696 3526 4.846137 GTGCATTTTGTAGACGACATTGAC 59.154 41.667 0.00 0.00 38.07 3.18
2699 3529 1.333115 TTGTAGACGACATTGACGCG 58.667 50.000 3.53 3.53 38.07 6.01
2732 3562 3.585862 TCGTCTTTCACATAAGTCTGCC 58.414 45.455 0.00 0.00 0.00 4.85
2736 3566 4.154918 GTCTTTCACATAAGTCTGCCCAAG 59.845 45.833 0.00 0.00 0.00 3.61
2747 3577 1.902508 TCTGCCCAAGTTCTAGTCTGG 59.097 52.381 0.00 0.00 0.00 3.86
2750 3580 1.406205 GCCCAAGTTCTAGTCTGGAGC 60.406 57.143 0.00 0.00 0.00 4.70
2797 3632 4.142049 TGAAGTTGCCCTTGTTAAAACTGG 60.142 41.667 0.00 0.00 32.03 4.00
2798 3633 3.371034 AGTTGCCCTTGTTAAAACTGGT 58.629 40.909 0.00 0.00 30.17 4.00
2816 3651 7.595819 AACTGGTAAAGATGTTTTTGGATGA 57.404 32.000 0.00 0.00 0.00 2.92
2863 3700 0.709397 TGATGGGGAGGGATGCAAAA 59.291 50.000 0.00 0.00 0.00 2.44
2866 3703 3.052262 TGATGGGGAGGGATGCAAAAATA 60.052 43.478 0.00 0.00 0.00 1.40
2868 3705 4.006247 TGGGGAGGGATGCAAAAATATT 57.994 40.909 0.00 0.00 0.00 1.28
2887 3724 9.476202 AAAATATTCTGCCAAAAGTTGTAACTC 57.524 29.630 0.00 0.00 38.57 3.01
2910 3747 1.003233 GGCAGCTGGTAAGTGGTAACT 59.997 52.381 17.12 0.00 38.71 2.24
2927 3764 2.957402 ACTCCATCTGCCAAAACTCA 57.043 45.000 0.00 0.00 0.00 3.41
2933 3770 3.881688 CCATCTGCCAAAACTCATCCTAG 59.118 47.826 0.00 0.00 0.00 3.02
2987 3853 2.224867 GCCTATGCTGGGTGTTGGATAT 60.225 50.000 0.00 0.00 33.53 1.63
2990 3856 3.959495 ATGCTGGGTGTTGGATATTCT 57.041 42.857 0.00 0.00 0.00 2.40
2991 3857 3.003394 TGCTGGGTGTTGGATATTCTG 57.997 47.619 0.00 0.00 0.00 3.02
2992 3858 1.678101 GCTGGGTGTTGGATATTCTGC 59.322 52.381 0.00 0.00 0.00 4.26
2994 3860 3.433598 GCTGGGTGTTGGATATTCTGCTA 60.434 47.826 0.00 0.00 0.00 3.49
2995 3861 4.780815 CTGGGTGTTGGATATTCTGCTAA 58.219 43.478 0.00 0.00 0.00 3.09
2996 3862 5.380043 CTGGGTGTTGGATATTCTGCTAAT 58.620 41.667 0.00 0.00 0.00 1.73
2998 3864 6.905736 TGGGTGTTGGATATTCTGCTAATTA 58.094 36.000 0.00 0.00 0.00 1.40
3000 3866 7.448161 TGGGTGTTGGATATTCTGCTAATTATG 59.552 37.037 0.00 0.00 0.00 1.90
3113 4015 5.414360 TGTTATCAGCTAGAAGTTCTGCTG 58.586 41.667 30.92 30.92 43.47 4.41
3191 4093 4.463891 ACTGAAATGGAATTGGTCACATCC 59.536 41.667 0.00 0.00 36.10 3.51
3192 4094 4.676109 TGAAATGGAATTGGTCACATCCT 58.324 39.130 0.00 0.00 36.10 3.24
3193 4095 5.085920 TGAAATGGAATTGGTCACATCCTT 58.914 37.500 0.00 0.00 36.10 3.36
3194 4096 5.047164 TGAAATGGAATTGGTCACATCCTTG 60.047 40.000 0.00 0.00 36.10 3.61
3195 4097 3.524095 TGGAATTGGTCACATCCTTGT 57.476 42.857 0.00 0.00 36.15 3.16
3196 4098 4.221262 AATGGAATTGGTCACATCCTTGTG 59.779 41.667 0.00 0.00 44.65 3.33
3197 4099 7.304933 AATGGAATTGGTCACATCCTTGTGC 62.305 44.000 1.27 0.00 43.71 4.57
3205 4107 2.602878 CACATCCTTGTGCAGATTTGC 58.397 47.619 0.24 0.24 46.20 3.68
3239 4159 0.102481 ACAGCGTCGTATTGGGCTAG 59.898 55.000 0.00 0.00 33.72 3.42
3364 4285 8.865090 ACATCTCTAAAGATCGTTCAATCCTAT 58.135 33.333 0.00 0.00 40.38 2.57
3381 4302 9.988815 TCAATCCTATTTGCTAAAGATAGAGAC 57.011 33.333 0.00 0.00 0.00 3.36
3385 4306 8.204836 TCCTATTTGCTAAAGATAGAGACAACC 58.795 37.037 0.00 0.00 0.00 3.77
3438 4359 5.990386 TGCTAAAACTACCATTCGTTGTGTA 59.010 36.000 0.00 0.00 30.39 2.90
3442 4363 6.780706 AAACTACCATTCGTTGTGTAGAAG 57.219 37.500 15.86 0.00 35.14 2.85
3555 4586 7.148641 GTCGCTGGAGATTCTTATATCTTTCA 58.851 38.462 0.00 0.00 35.06 2.69
3558 4589 7.601886 CGCTGGAGATTCTTATATCTTTCACAT 59.398 37.037 0.00 0.00 35.06 3.21
3617 4653 5.047188 GCTCTGGTAAATCAGTAGAAGAGC 58.953 45.833 5.67 5.67 45.89 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 5.660629 TTTACGTGATGGCCGTATAATTG 57.339 39.130 0.00 0.00 40.16 2.32
24 25 2.281517 CCATTTTACGTGATGGCCGTA 58.718 47.619 12.52 0.00 39.60 4.02
29 30 7.476667 TGTATAAAAGCCATTTTACGTGATGG 58.523 34.615 17.94 17.94 42.21 3.51
33 34 6.252655 GCCTTGTATAAAAGCCATTTTACGTG 59.747 38.462 0.00 0.00 42.21 4.49
35 36 6.560711 AGCCTTGTATAAAAGCCATTTTACG 58.439 36.000 0.00 0.00 42.21 3.18
44 45 8.459911 TTCCCTATAAAGCCTTGTATAAAAGC 57.540 34.615 0.00 0.00 0.00 3.51
46 47 8.459911 GCTTCCCTATAAAGCCTTGTATAAAA 57.540 34.615 0.00 0.00 42.63 1.52
161 443 3.151022 GAGGACAGGAGGAGGCGG 61.151 72.222 0.00 0.00 0.00 6.13
162 444 3.151022 GGAGGACAGGAGGAGGCG 61.151 72.222 0.00 0.00 0.00 5.52
171 453 4.881019 TCTTTCTTGAGAAGGAGGACAG 57.119 45.455 1.87 0.00 35.60 3.51
181 463 8.378565 ACAGAGAAACCATAATCTTTCTTGAGA 58.621 33.333 0.00 0.00 36.95 3.27
183 465 8.378565 AGACAGAGAAACCATAATCTTTCTTGA 58.621 33.333 0.00 0.00 36.95 3.02
196 478 2.936919 ACATGCAGACAGAGAAACCA 57.063 45.000 0.00 0.00 0.00 3.67
199 481 4.960938 ACTGTAACATGCAGACAGAGAAA 58.039 39.130 22.30 0.00 42.65 2.52
206 488 8.504005 ACACTTAATTAACTGTAACATGCAGAC 58.496 33.333 8.27 0.00 37.40 3.51
207 489 8.615878 ACACTTAATTAACTGTAACATGCAGA 57.384 30.769 8.27 0.00 37.40 4.26
210 492 9.840427 ATGAACACTTAATTAACTGTAACATGC 57.160 29.630 18.16 0.00 0.00 4.06
227 509 9.651913 AACTTTGTTTTTGTGATATGAACACTT 57.348 25.926 0.00 0.00 38.81 3.16
291 573 7.289084 GCCCCTTTGGATCTTTTTATATTGGTA 59.711 37.037 0.00 0.00 35.39 3.25
292 574 6.099701 GCCCCTTTGGATCTTTTTATATTGGT 59.900 38.462 0.00 0.00 35.39 3.67
293 575 6.099557 TGCCCCTTTGGATCTTTTTATATTGG 59.900 38.462 0.00 0.00 35.39 3.16
294 576 7.123355 TGCCCCTTTGGATCTTTTTATATTG 57.877 36.000 0.00 0.00 35.39 1.90
295 577 6.902974 ACTGCCCCTTTGGATCTTTTTATATT 59.097 34.615 0.00 0.00 35.39 1.28
296 578 6.443832 ACTGCCCCTTTGGATCTTTTTATAT 58.556 36.000 0.00 0.00 35.39 0.86
297 579 5.837829 ACTGCCCCTTTGGATCTTTTTATA 58.162 37.500 0.00 0.00 35.39 0.98
298 580 4.687976 ACTGCCCCTTTGGATCTTTTTAT 58.312 39.130 0.00 0.00 35.39 1.40
300 582 2.976440 ACTGCCCCTTTGGATCTTTTT 58.024 42.857 0.00 0.00 35.39 1.94
301 583 2.702270 ACTGCCCCTTTGGATCTTTT 57.298 45.000 0.00 0.00 35.39 2.27
303 585 1.272704 GGAACTGCCCCTTTGGATCTT 60.273 52.381 0.00 0.00 35.39 2.40
304 586 0.332972 GGAACTGCCCCTTTGGATCT 59.667 55.000 0.00 0.00 35.39 2.75
305 587 0.039618 TGGAACTGCCCCTTTGGATC 59.960 55.000 0.00 0.00 35.39 3.36
306 588 0.486879 TTGGAACTGCCCCTTTGGAT 59.513 50.000 0.00 0.00 35.39 3.41
308 590 0.392706 GTTTGGAACTGCCCCTTTGG 59.607 55.000 0.00 0.00 34.97 3.28
309 591 0.392706 GGTTTGGAACTGCCCCTTTG 59.607 55.000 0.00 0.00 34.97 2.77
311 593 0.190815 ATGGTTTGGAACTGCCCCTT 59.809 50.000 0.00 0.00 34.97 3.95
312 594 0.251787 GATGGTTTGGAACTGCCCCT 60.252 55.000 0.00 0.00 34.97 4.79
314 596 1.177401 GAGATGGTTTGGAACTGCCC 58.823 55.000 0.00 0.00 34.97 5.36
315 597 0.804989 CGAGATGGTTTGGAACTGCC 59.195 55.000 0.00 0.00 37.10 4.85
316 598 1.464997 GTCGAGATGGTTTGGAACTGC 59.535 52.381 0.00 0.00 0.00 4.40
317 599 2.076863 GGTCGAGATGGTTTGGAACTG 58.923 52.381 0.00 0.00 0.00 3.16
318 600 1.337823 CGGTCGAGATGGTTTGGAACT 60.338 52.381 0.00 0.00 0.00 3.01
319 601 1.076332 CGGTCGAGATGGTTTGGAAC 58.924 55.000 0.00 0.00 0.00 3.62
320 602 0.682852 ACGGTCGAGATGGTTTGGAA 59.317 50.000 0.00 0.00 0.00 3.53
321 603 0.245539 GACGGTCGAGATGGTTTGGA 59.754 55.000 0.00 0.00 0.00 3.53
322 604 0.037697 TGACGGTCGAGATGGTTTGG 60.038 55.000 3.34 0.00 0.00 3.28
323 605 1.790755 TTGACGGTCGAGATGGTTTG 58.209 50.000 3.34 0.00 0.00 2.93
324 606 2.536761 TTTGACGGTCGAGATGGTTT 57.463 45.000 3.34 0.00 0.00 3.27
325 607 2.028476 TGATTTGACGGTCGAGATGGTT 60.028 45.455 3.34 0.00 0.00 3.67
326 608 1.548719 TGATTTGACGGTCGAGATGGT 59.451 47.619 3.34 0.00 0.00 3.55
327 609 2.293677 TGATTTGACGGTCGAGATGG 57.706 50.000 3.34 0.00 0.00 3.51
328 610 3.190079 ACATGATTTGACGGTCGAGATG 58.810 45.455 0.00 7.81 0.00 2.90
329 611 3.526931 ACATGATTTGACGGTCGAGAT 57.473 42.857 0.00 0.00 0.00 2.75
330 612 3.313012 AACATGATTTGACGGTCGAGA 57.687 42.857 0.00 0.00 0.00 4.04
331 613 5.043903 AGATAACATGATTTGACGGTCGAG 58.956 41.667 0.00 0.00 0.00 4.04
332 614 5.006153 AGATAACATGATTTGACGGTCGA 57.994 39.130 0.00 0.00 0.00 4.20
333 615 5.107837 GCTAGATAACATGATTTGACGGTCG 60.108 44.000 0.00 0.00 0.00 4.79
334 616 5.107837 CGCTAGATAACATGATTTGACGGTC 60.108 44.000 0.00 0.00 0.00 4.79
335 617 4.745125 CGCTAGATAACATGATTTGACGGT 59.255 41.667 0.00 0.00 0.00 4.83
336 618 4.150627 CCGCTAGATAACATGATTTGACGG 59.849 45.833 0.00 0.00 0.00 4.79
337 619 4.745125 ACCGCTAGATAACATGATTTGACG 59.255 41.667 0.00 0.00 0.00 4.35
338 620 6.257849 TGAACCGCTAGATAACATGATTTGAC 59.742 38.462 0.00 0.00 0.00 3.18
339 621 6.345298 TGAACCGCTAGATAACATGATTTGA 58.655 36.000 0.00 0.00 0.00 2.69
340 622 6.603237 TGAACCGCTAGATAACATGATTTG 57.397 37.500 0.00 0.00 0.00 2.32
341 623 7.624360 TTTGAACCGCTAGATAACATGATTT 57.376 32.000 0.00 0.00 0.00 2.17
342 624 7.307396 CGATTTGAACCGCTAGATAACATGATT 60.307 37.037 0.00 0.00 0.00 2.57
343 625 6.146184 CGATTTGAACCGCTAGATAACATGAT 59.854 38.462 0.00 0.00 0.00 2.45
344 626 5.462068 CGATTTGAACCGCTAGATAACATGA 59.538 40.000 0.00 0.00 0.00 3.07
346 628 4.211374 GCGATTTGAACCGCTAGATAACAT 59.789 41.667 0.00 0.00 46.96 2.71
348 630 4.116713 GCGATTTGAACCGCTAGATAAC 57.883 45.455 0.00 0.00 46.96 1.89
357 639 1.468520 ACATTGGAGCGATTTGAACCG 59.531 47.619 0.00 0.00 0.00 4.44
359 641 4.159377 TCAACATTGGAGCGATTTGAAC 57.841 40.909 0.00 0.00 0.00 3.18
373 655 1.748493 ACGTGTTTGGTGCTCAACATT 59.252 42.857 0.00 0.00 34.67 2.71
374 656 1.388547 ACGTGTTTGGTGCTCAACAT 58.611 45.000 0.00 0.00 34.67 2.71
375 657 1.169577 AACGTGTTTGGTGCTCAACA 58.830 45.000 0.00 0.00 34.67 3.33
376 658 2.271821 AAACGTGTTTGGTGCTCAAC 57.728 45.000 0.00 0.00 34.67 3.18
377 659 3.728268 CGTTAAACGTGTTTGGTGCTCAA 60.728 43.478 8.19 0.00 36.74 3.02
378 660 2.223066 CGTTAAACGTGTTTGGTGCTCA 60.223 45.455 8.19 0.00 36.74 4.26
379 661 2.368685 CGTTAAACGTGTTTGGTGCTC 58.631 47.619 8.19 0.00 36.74 4.26
380 662 1.532298 GCGTTAAACGTGTTTGGTGCT 60.532 47.619 8.19 0.00 44.73 4.40
382 664 2.031191 AGAGCGTTAAACGTGTTTGGTG 59.969 45.455 8.19 0.00 44.73 4.17
384 666 4.455917 TTAGAGCGTTAAACGTGTTTGG 57.544 40.909 8.19 0.00 44.73 3.28
385 667 6.517374 GGTAATTAGAGCGTTAAACGTGTTTG 59.483 38.462 8.19 0.00 44.73 2.93
388 670 4.627035 GGGTAATTAGAGCGTTAAACGTGT 59.373 41.667 0.00 0.00 44.73 4.49
389 671 4.626604 TGGGTAATTAGAGCGTTAAACGTG 59.373 41.667 0.00 0.00 44.73 4.49
390 672 4.819769 TGGGTAATTAGAGCGTTAAACGT 58.180 39.130 0.00 0.00 44.73 3.99
392 674 6.537660 AGTGATGGGTAATTAGAGCGTTAAAC 59.462 38.462 0.00 0.00 0.00 2.01
394 676 6.046593 CAGTGATGGGTAATTAGAGCGTTAA 58.953 40.000 0.00 0.00 0.00 2.01
395 677 5.597806 CAGTGATGGGTAATTAGAGCGTTA 58.402 41.667 0.00 0.00 0.00 3.18
396 678 4.442706 CAGTGATGGGTAATTAGAGCGTT 58.557 43.478 0.00 0.00 0.00 4.84
397 679 3.741388 GCAGTGATGGGTAATTAGAGCGT 60.741 47.826 0.00 0.00 0.00 5.07
398 680 2.802816 GCAGTGATGGGTAATTAGAGCG 59.197 50.000 0.00 0.00 0.00 5.03
399 681 3.142174 GGCAGTGATGGGTAATTAGAGC 58.858 50.000 0.00 0.00 0.00 4.09
402 684 8.267183 TCATATATGGCAGTGATGGGTAATTAG 58.733 37.037 12.78 0.00 0.00 1.73
403 685 8.046708 GTCATATATGGCAGTGATGGGTAATTA 58.953 37.037 12.50 0.00 31.41 1.40
404 686 6.886459 GTCATATATGGCAGTGATGGGTAATT 59.114 38.462 12.50 0.00 31.41 1.40
405 687 6.216251 AGTCATATATGGCAGTGATGGGTAAT 59.784 38.462 19.15 0.00 34.11 1.89
407 689 5.093677 AGTCATATATGGCAGTGATGGGTA 58.906 41.667 19.15 0.00 34.11 3.69
408 690 3.912528 AGTCATATATGGCAGTGATGGGT 59.087 43.478 19.15 0.00 34.11 4.51
409 691 4.019950 TGAGTCATATATGGCAGTGATGGG 60.020 45.833 19.15 0.00 34.11 4.00
410 692 5.156608 TGAGTCATATATGGCAGTGATGG 57.843 43.478 19.15 0.00 34.11 3.51
412 694 5.233225 CGTTGAGTCATATATGGCAGTGAT 58.767 41.667 19.15 0.00 34.11 3.06
413 695 4.620982 CGTTGAGTCATATATGGCAGTGA 58.379 43.478 19.15 0.00 34.11 3.41
414 696 3.185188 GCGTTGAGTCATATATGGCAGTG 59.815 47.826 19.15 5.58 34.11 3.66
415 697 3.070159 AGCGTTGAGTCATATATGGCAGT 59.930 43.478 19.15 0.00 34.11 4.40
416 698 3.657634 AGCGTTGAGTCATATATGGCAG 58.342 45.455 19.15 6.31 34.11 4.85
417 699 3.751479 AGCGTTGAGTCATATATGGCA 57.249 42.857 19.15 9.37 34.11 4.92
418 700 4.806247 GGATAGCGTTGAGTCATATATGGC 59.194 45.833 9.39 9.39 0.00 4.40
419 701 5.105351 TGGGATAGCGTTGAGTCATATATGG 60.105 44.000 12.78 0.00 0.00 2.74
420 702 5.965922 TGGGATAGCGTTGAGTCATATATG 58.034 41.667 6.36 6.36 0.00 1.78
421 703 6.381133 TCATGGGATAGCGTTGAGTCATATAT 59.619 38.462 0.00 0.00 0.00 0.86
422 704 5.714806 TCATGGGATAGCGTTGAGTCATATA 59.285 40.000 0.00 0.00 0.00 0.86
423 705 4.528206 TCATGGGATAGCGTTGAGTCATAT 59.472 41.667 0.00 0.00 0.00 1.78
424 706 3.895041 TCATGGGATAGCGTTGAGTCATA 59.105 43.478 0.00 0.00 0.00 2.15
425 707 2.700371 TCATGGGATAGCGTTGAGTCAT 59.300 45.455 0.00 0.00 0.00 3.06
426 708 2.107366 TCATGGGATAGCGTTGAGTCA 58.893 47.619 0.00 0.00 0.00 3.41
428 710 3.627395 TTTCATGGGATAGCGTTGAGT 57.373 42.857 0.00 0.00 0.00 3.41
429 711 4.212847 CAGATTTCATGGGATAGCGTTGAG 59.787 45.833 0.00 0.00 0.00 3.02
430 712 4.129380 CAGATTTCATGGGATAGCGTTGA 58.871 43.478 0.00 0.00 0.00 3.18
432 714 2.880890 GCAGATTTCATGGGATAGCGTT 59.119 45.455 0.00 0.00 0.00 4.84
433 715 2.498167 GCAGATTTCATGGGATAGCGT 58.502 47.619 0.00 0.00 0.00 5.07
436 718 8.991783 ATTATATGGCAGATTTCATGGGATAG 57.008 34.615 0.00 0.00 0.00 2.08
438 720 9.772605 TTAATTATATGGCAGATTTCATGGGAT 57.227 29.630 0.00 0.00 0.00 3.85
439 721 9.772605 ATTAATTATATGGCAGATTTCATGGGA 57.227 29.630 0.00 0.00 0.00 4.37
491 773 8.974060 ACGTTGGTATTTGGTAAGATATCAAT 57.026 30.769 5.32 0.00 33.02 2.57
495 777 9.101655 GTTGTACGTTGGTATTTGGTAAGATAT 57.898 33.333 0.00 0.00 0.00 1.63
497 779 6.935771 TGTTGTACGTTGGTATTTGGTAAGAT 59.064 34.615 0.00 0.00 0.00 2.40
498 780 6.286758 TGTTGTACGTTGGTATTTGGTAAGA 58.713 36.000 0.00 0.00 0.00 2.10
499 781 6.424509 TCTGTTGTACGTTGGTATTTGGTAAG 59.575 38.462 0.00 0.00 0.00 2.34
501 783 5.851720 TCTGTTGTACGTTGGTATTTGGTA 58.148 37.500 0.00 0.00 0.00 3.25
502 784 4.706035 TCTGTTGTACGTTGGTATTTGGT 58.294 39.130 0.00 0.00 0.00 3.67
503 785 5.873179 ATCTGTTGTACGTTGGTATTTGG 57.127 39.130 0.00 0.00 0.00 3.28
509 791 8.139989 GGTAAGATATATCTGTTGTACGTTGGT 58.860 37.037 16.01 0.00 37.19 3.67
510 792 8.358148 AGGTAAGATATATCTGTTGTACGTTGG 58.642 37.037 16.01 0.00 37.19 3.77
556 838 7.119262 GCAATGCACGTTTATATTAGGTAGGAT 59.881 37.037 0.00 0.00 0.00 3.24
557 839 6.425721 GCAATGCACGTTTATATTAGGTAGGA 59.574 38.462 0.00 0.00 0.00 2.94
558 840 6.203915 TGCAATGCACGTTTATATTAGGTAGG 59.796 38.462 2.72 0.00 31.71 3.18
575 857 6.759356 ACTAGTAATAATGTACGTGCAATGCA 59.241 34.615 11.22 2.72 35.60 3.96
576 858 7.173863 ACTAGTAATAATGTACGTGCAATGC 57.826 36.000 11.22 0.00 0.00 3.56
608 890 8.143193 TGACAACTTGAATTGATATGTGCTTTT 58.857 29.630 0.00 0.00 33.57 2.27
609 891 7.660112 TGACAACTTGAATTGATATGTGCTTT 58.340 30.769 0.00 0.00 33.57 3.51
610 892 7.218228 TGACAACTTGAATTGATATGTGCTT 57.782 32.000 0.00 0.00 33.57 3.91
611 893 6.822667 TGACAACTTGAATTGATATGTGCT 57.177 33.333 0.00 0.00 33.57 4.40
613 895 7.866898 TGGTTTGACAACTTGAATTGATATGTG 59.133 33.333 0.00 0.00 33.57 3.21
614 896 7.950512 TGGTTTGACAACTTGAATTGATATGT 58.049 30.769 0.00 0.00 33.57 2.29
615 897 8.815141 TTGGTTTGACAACTTGAATTGATATG 57.185 30.769 0.00 0.00 33.57 1.78
617 899 9.258826 CATTTGGTTTGACAACTTGAATTGATA 57.741 29.630 0.00 0.00 33.57 2.15
618 900 7.769970 ACATTTGGTTTGACAACTTGAATTGAT 59.230 29.630 0.00 0.00 33.57 2.57
620 902 7.306205 ACATTTGGTTTGACAACTTGAATTG 57.694 32.000 0.00 0.00 32.90 2.32
621 903 9.442047 TTTACATTTGGTTTGACAACTTGAATT 57.558 25.926 0.00 0.00 32.90 2.17
622 904 9.442047 TTTTACATTTGGTTTGACAACTTGAAT 57.558 25.926 0.00 0.00 32.90 2.57
623 905 8.833231 TTTTACATTTGGTTTGACAACTTGAA 57.167 26.923 0.00 0.00 32.90 2.69
624 906 9.092876 GATTTTACATTTGGTTTGACAACTTGA 57.907 29.630 0.00 0.00 32.90 3.02
625 907 9.097257 AGATTTTACATTTGGTTTGACAACTTG 57.903 29.630 0.00 0.00 32.90 3.16
627 909 7.224557 GCAGATTTTACATTTGGTTTGACAACT 59.775 33.333 0.00 0.00 32.90 3.16
628 910 7.010923 TGCAGATTTTACATTTGGTTTGACAAC 59.989 33.333 0.00 0.00 0.00 3.32
629 911 7.044181 TGCAGATTTTACATTTGGTTTGACAA 58.956 30.769 0.00 0.00 0.00 3.18
630 912 6.577103 TGCAGATTTTACATTTGGTTTGACA 58.423 32.000 0.00 0.00 0.00 3.58
631 913 7.010923 TGTTGCAGATTTTACATTTGGTTTGAC 59.989 33.333 0.00 0.00 0.00 3.18
633 915 7.244166 TGTTGCAGATTTTACATTTGGTTTG 57.756 32.000 0.00 0.00 0.00 2.93
634 916 8.449251 AATGTTGCAGATTTTACATTTGGTTT 57.551 26.923 6.40 0.00 37.82 3.27
635 917 7.933033 AGAATGTTGCAGATTTTACATTTGGTT 59.067 29.630 12.20 0.00 40.29 3.67
636 918 7.385752 CAGAATGTTGCAGATTTTACATTTGGT 59.614 33.333 12.20 0.85 40.29 3.67
638 920 7.148540 CCCAGAATGTTGCAGATTTTACATTTG 60.149 37.037 12.20 11.55 40.29 2.32
639 921 6.875195 CCCAGAATGTTGCAGATTTTACATTT 59.125 34.615 12.20 2.57 40.29 2.32
640 922 6.400568 CCCAGAATGTTGCAGATTTTACATT 58.599 36.000 11.06 11.06 42.22 2.71
641 923 5.105228 CCCCAGAATGTTGCAGATTTTACAT 60.105 40.000 0.00 0.00 32.89 2.29
643 925 4.220602 ACCCCAGAATGTTGCAGATTTTAC 59.779 41.667 0.00 0.00 0.00 2.01
644 926 4.415596 ACCCCAGAATGTTGCAGATTTTA 58.584 39.130 0.00 0.00 0.00 1.52
645 927 3.242011 ACCCCAGAATGTTGCAGATTTT 58.758 40.909 0.00 0.00 0.00 1.82
646 928 2.893424 ACCCCAGAATGTTGCAGATTT 58.107 42.857 0.00 0.00 0.00 2.17
647 929 2.610438 ACCCCAGAATGTTGCAGATT 57.390 45.000 0.00 0.00 0.00 2.40
648 930 2.225091 TGAACCCCAGAATGTTGCAGAT 60.225 45.455 0.00 0.00 0.00 2.90
649 931 1.144708 TGAACCCCAGAATGTTGCAGA 59.855 47.619 0.00 0.00 0.00 4.26
650 932 1.619654 TGAACCCCAGAATGTTGCAG 58.380 50.000 0.00 0.00 0.00 4.41
651 933 2.079170 TTGAACCCCAGAATGTTGCA 57.921 45.000 0.00 0.00 0.00 4.08
653 935 2.354003 GCCATTGAACCCCAGAATGTTG 60.354 50.000 0.00 0.00 0.00 3.33
654 936 1.901833 GCCATTGAACCCCAGAATGTT 59.098 47.619 0.00 0.00 0.00 2.71
655 937 1.077663 AGCCATTGAACCCCAGAATGT 59.922 47.619 0.00 0.00 0.00 2.71
656 938 1.856629 AGCCATTGAACCCCAGAATG 58.143 50.000 0.00 0.00 0.00 2.67
657 939 3.979501 ATAGCCATTGAACCCCAGAAT 57.020 42.857 0.00 0.00 0.00 2.40
658 940 4.871871 TTATAGCCATTGAACCCCAGAA 57.128 40.909 0.00 0.00 0.00 3.02
659 941 4.532834 GTTTATAGCCATTGAACCCCAGA 58.467 43.478 0.00 0.00 0.00 3.86
660 942 3.636764 GGTTTATAGCCATTGAACCCCAG 59.363 47.826 0.00 0.00 34.97 4.45
663 945 5.046950 TGTTTGGTTTATAGCCATTGAACCC 60.047 40.000 7.34 0.00 39.14 4.11
664 946 6.031751 TGTTTGGTTTATAGCCATTGAACC 57.968 37.500 0.00 0.00 40.06 3.62
665 947 9.646427 TTATTGTTTGGTTTATAGCCATTGAAC 57.354 29.630 0.00 3.06 35.71 3.18
666 948 9.646427 GTTATTGTTTGGTTTATAGCCATTGAA 57.354 29.630 0.00 0.00 35.71 2.69
667 949 8.807118 TGTTATTGTTTGGTTTATAGCCATTGA 58.193 29.630 0.00 0.00 35.71 2.57
668 950 8.994429 TGTTATTGTTTGGTTTATAGCCATTG 57.006 30.769 0.00 0.00 35.71 2.82
669 951 9.430623 GTTGTTATTGTTTGGTTTATAGCCATT 57.569 29.630 0.00 0.00 35.71 3.16
670 952 8.811994 AGTTGTTATTGTTTGGTTTATAGCCAT 58.188 29.630 0.00 0.00 35.71 4.40
671 953 8.184304 AGTTGTTATTGTTTGGTTTATAGCCA 57.816 30.769 0.00 0.00 0.00 4.75
672 954 8.921670 CAAGTTGTTATTGTTTGGTTTATAGCC 58.078 33.333 0.00 0.00 0.00 3.93
674 956 8.921670 GGCAAGTTGTTATTGTTTGGTTTATAG 58.078 33.333 4.48 0.00 0.00 1.31
676 958 7.275920 TGGCAAGTTGTTATTGTTTGGTTTAT 58.724 30.769 4.48 0.00 0.00 1.40
678 960 5.491982 TGGCAAGTTGTTATTGTTTGGTTT 58.508 33.333 4.48 0.00 0.00 3.27
734 1173 3.181467 CCAAAGTGAGGGCATGACAAAAA 60.181 43.478 0.00 0.00 0.00 1.94
735 1174 2.364970 CCAAAGTGAGGGCATGACAAAA 59.635 45.455 0.00 0.00 0.00 2.44
736 1175 1.962807 CCAAAGTGAGGGCATGACAAA 59.037 47.619 0.00 0.00 0.00 2.83
738 1177 0.478072 ACCAAAGTGAGGGCATGACA 59.522 50.000 0.00 0.00 0.00 3.58
739 1178 1.168714 GACCAAAGTGAGGGCATGAC 58.831 55.000 0.00 0.00 33.02 3.06
740 1179 0.770499 TGACCAAAGTGAGGGCATGA 59.230 50.000 0.00 0.00 39.89 3.07
741 1180 3.344703 TGACCAAAGTGAGGGCATG 57.655 52.632 0.00 0.00 39.89 4.06
744 1183 1.598701 GGCATGACCAAAGTGAGGGC 61.599 60.000 0.00 0.00 38.86 5.19
745 1184 2.571548 GGCATGACCAAAGTGAGGG 58.428 57.895 0.00 0.00 38.86 4.30
769 1208 3.309296 TGTCCCAATTTGCCTTACCAAA 58.691 40.909 0.00 0.00 38.87 3.28
770 1209 2.964209 TGTCCCAATTTGCCTTACCAA 58.036 42.857 0.00 0.00 0.00 3.67
771 1210 2.685106 TGTCCCAATTTGCCTTACCA 57.315 45.000 0.00 0.00 0.00 3.25
772 1211 4.344359 TTTTGTCCCAATTTGCCTTACC 57.656 40.909 0.00 0.00 0.00 2.85
773 1212 5.119694 TGTTTTTGTCCCAATTTGCCTTAC 58.880 37.500 0.00 0.00 0.00 2.34
774 1213 5.359194 TGTTTTTGTCCCAATTTGCCTTA 57.641 34.783 0.00 0.00 0.00 2.69
775 1214 4.198530 CTGTTTTTGTCCCAATTTGCCTT 58.801 39.130 0.00 0.00 0.00 4.35
776 1215 3.807553 CTGTTTTTGTCCCAATTTGCCT 58.192 40.909 0.00 0.00 0.00 4.75
779 1218 2.877786 GGGCTGTTTTTGTCCCAATTTG 59.122 45.455 0.00 0.00 38.62 2.32
781 1220 1.069978 CGGGCTGTTTTTGTCCCAATT 59.930 47.619 0.00 0.00 38.68 2.32
782 1221 0.678950 CGGGCTGTTTTTGTCCCAAT 59.321 50.000 0.00 0.00 38.68 3.16
783 1222 2.022240 GCGGGCTGTTTTTGTCCCAA 62.022 55.000 0.00 0.00 38.68 4.12
785 1224 1.815817 ATGCGGGCTGTTTTTGTCCC 61.816 55.000 0.00 0.00 35.42 4.46
787 1226 1.139163 CAATGCGGGCTGTTTTTGTC 58.861 50.000 0.00 0.00 0.00 3.18
788 1227 0.879839 GCAATGCGGGCTGTTTTTGT 60.880 50.000 0.00 0.00 0.00 2.83
789 1228 1.567746 GGCAATGCGGGCTGTTTTTG 61.568 55.000 0.00 0.00 0.00 2.44
790 1229 1.301637 GGCAATGCGGGCTGTTTTT 60.302 52.632 0.00 0.00 0.00 1.94
791 1230 2.343387 GGCAATGCGGGCTGTTTT 59.657 55.556 0.00 0.00 0.00 2.43
793 1232 4.992740 TGGGCAATGCGGGCTGTT 62.993 61.111 0.00 0.00 0.00 3.16
813 1450 2.664851 TGCTCAGTGGTTTCGCCG 60.665 61.111 0.00 0.00 41.21 6.46
852 1494 2.472909 GGCGAGGCTCGGGATTTTG 61.473 63.158 35.03 8.17 40.84 2.44
853 1495 2.124695 GGCGAGGCTCGGGATTTT 60.125 61.111 35.03 0.00 40.84 1.82
882 1532 1.288037 GAAATGGGGGAGCTAGGGTTT 59.712 52.381 0.00 0.00 0.00 3.27
909 1559 1.153549 GACAAGGGCTCGCTCGATT 60.154 57.895 0.00 0.00 0.00 3.34
1062 1727 2.359107 CTTGCCCGCTTCTCTGCA 60.359 61.111 0.00 0.00 0.00 4.41
1144 1812 0.192064 GGGAGGAGGGAGATGATGGA 59.808 60.000 0.00 0.00 0.00 3.41
1674 2422 5.183522 ACCAAAAACTTTGGACACGTAAAGA 59.816 36.000 21.92 0.00 42.06 2.52
1747 2498 7.453126 TCCTTTTTGTTTGGAGCTATGGAAATA 59.547 33.333 0.00 0.00 0.00 1.40
1749 2500 5.600484 TCCTTTTTGTTTGGAGCTATGGAAA 59.400 36.000 0.00 0.00 0.00 3.13
1750 2501 5.144100 TCCTTTTTGTTTGGAGCTATGGAA 58.856 37.500 0.00 0.00 0.00 3.53
1751 2502 4.735369 TCCTTTTTGTTTGGAGCTATGGA 58.265 39.130 0.00 0.00 0.00 3.41
1763 2514 4.275936 CGATGACCAGTTCTCCTTTTTGTT 59.724 41.667 0.00 0.00 0.00 2.83
1828 2585 2.545526 CACAATCATCGTCATAGGCACC 59.454 50.000 0.00 0.00 0.00 5.01
1829 2586 3.198068 ACACAATCATCGTCATAGGCAC 58.802 45.455 0.00 0.00 0.00 5.01
1830 2587 3.541996 ACACAATCATCGTCATAGGCA 57.458 42.857 0.00 0.00 0.00 4.75
1831 2588 5.050490 AGTAACACAATCATCGTCATAGGC 58.950 41.667 0.00 0.00 0.00 3.93
1832 2589 7.542477 GGATAGTAACACAATCATCGTCATAGG 59.458 40.741 0.00 0.00 0.00 2.57
1833 2590 7.271438 CGGATAGTAACACAATCATCGTCATAG 59.729 40.741 0.00 0.00 0.00 2.23
1839 2599 3.987868 CCCGGATAGTAACACAATCATCG 59.012 47.826 0.73 0.00 0.00 3.84
2290 3097 3.316308 CGAGGCCCATTTTTCTTATCCTG 59.684 47.826 0.00 0.00 0.00 3.86
2432 3239 9.710979 CTTCGAATTCAACTTTGTTTAACACTA 57.289 29.630 6.22 0.00 0.00 2.74
2514 3324 4.493547 CATCTCGAGAAGCTCTGTTTTCT 58.506 43.478 20.91 0.00 36.41 2.52
2578 3391 4.406648 AATCATGGATGTGCTCTACGAA 57.593 40.909 0.00 0.00 0.00 3.85
2616 3435 0.737219 CTTGGCTATGGCTGCTGAAC 59.263 55.000 0.00 0.00 38.73 3.18
2631 3451 4.736759 GCAATCTTCAGGCATCAATCTTGG 60.737 45.833 0.00 0.00 0.00 3.61
2634 3454 3.380637 GTGCAATCTTCAGGCATCAATCT 59.619 43.478 0.00 0.00 40.05 2.40
2657 3478 5.618056 AATGCACACAAGACACTAAGATG 57.382 39.130 0.00 0.00 0.00 2.90
2658 3487 6.039717 ACAAAATGCACACAAGACACTAAGAT 59.960 34.615 0.00 0.00 0.00 2.40
2675 3505 4.081761 CGTCAATGTCGTCTACAAAATGC 58.918 43.478 0.00 0.00 42.70 3.56
2696 3526 0.314578 GACGATGCAATCTTCACGCG 60.315 55.000 3.53 3.53 40.93 6.01
2699 3529 4.083855 TGTGAAAGACGATGCAATCTTCAC 60.084 41.667 19.92 19.92 46.48 3.18
2732 3562 2.167487 GGAGCTCCAGACTAGAACTTGG 59.833 54.545 28.43 0.00 35.64 3.61
2736 3566 2.949644 GAGAGGAGCTCCAGACTAGAAC 59.050 54.545 33.90 13.61 37.69 3.01
2747 3577 5.596772 AGTTACCAGAATAAGAGAGGAGCTC 59.403 44.000 4.71 4.71 44.29 4.09
2750 3580 9.137459 TCATAAGTTACCAGAATAAGAGAGGAG 57.863 37.037 0.00 0.00 0.00 3.69
2825 3660 6.320171 CCATCAGAATTTTACTTCAGTGCAG 58.680 40.000 0.00 0.00 0.00 4.41
2863 3700 7.174253 TCGAGTTACAACTTTTGGCAGAATATT 59.826 33.333 0.00 0.00 39.88 1.28
2866 3703 4.819630 TCGAGTTACAACTTTTGGCAGAAT 59.180 37.500 0.00 0.00 39.88 2.40
2868 3705 3.799366 TCGAGTTACAACTTTTGGCAGA 58.201 40.909 0.00 0.00 39.88 4.26
2887 3724 1.448540 CCACTTACCAGCTGCCTCG 60.449 63.158 8.66 0.00 0.00 4.63
2910 3747 2.309755 AGGATGAGTTTTGGCAGATGGA 59.690 45.455 0.00 0.00 0.00 3.41
2927 3764 5.291100 TGCATAGGATAAGACCCTAGGAT 57.709 43.478 11.48 0.00 39.65 3.24
2933 3770 5.358160 GCCATAATTGCATAGGATAAGACCC 59.642 44.000 0.00 0.00 0.00 4.46
2987 3853 7.779798 ACCTTTCATAAGCCATAATTAGCAGAA 59.220 33.333 0.18 0.00 0.00 3.02
2990 3856 7.059788 TGACCTTTCATAAGCCATAATTAGCA 58.940 34.615 0.18 0.00 0.00 3.49
2991 3857 7.510549 TGACCTTTCATAAGCCATAATTAGC 57.489 36.000 0.00 0.00 0.00 3.09
2992 3858 7.308830 GGCTGACCTTTCATAAGCCATAATTAG 60.309 40.741 7.11 0.00 39.40 1.73
2994 3860 5.302823 GGCTGACCTTTCATAAGCCATAATT 59.697 40.000 7.11 0.00 39.40 1.40
2995 3861 4.829492 GGCTGACCTTTCATAAGCCATAAT 59.171 41.667 7.11 0.00 39.40 1.28
2996 3862 4.207165 GGCTGACCTTTCATAAGCCATAA 58.793 43.478 7.11 0.00 39.40 1.90
2998 3864 2.659428 GGCTGACCTTTCATAAGCCAT 58.341 47.619 7.11 0.00 39.40 4.40
3029 3929 3.835395 CCTAGCTAGAAAGTCATAGGGGG 59.165 52.174 22.70 0.00 0.00 5.40
3039 3939 4.262420 GGCATCTCCTTCCTAGCTAGAAAG 60.262 50.000 22.70 17.48 0.00 2.62
3113 4015 4.669318 CCAACTGAAGCATGTTGATCATC 58.331 43.478 0.00 0.00 44.29 2.92
3198 4100 9.196552 GCTGTTAAGAAAATTACTTGCAAATCT 57.803 29.630 0.00 0.00 0.00 2.40
3199 4101 8.155923 CGCTGTTAAGAAAATTACTTGCAAATC 58.844 33.333 0.00 0.00 0.00 2.17
3200 4102 7.651704 ACGCTGTTAAGAAAATTACTTGCAAAT 59.348 29.630 0.00 0.00 0.00 2.32
3201 4103 6.975772 ACGCTGTTAAGAAAATTACTTGCAAA 59.024 30.769 0.00 0.00 0.00 3.68
3202 4104 6.500041 ACGCTGTTAAGAAAATTACTTGCAA 58.500 32.000 0.00 0.00 0.00 4.08
3203 4105 6.067263 ACGCTGTTAAGAAAATTACTTGCA 57.933 33.333 7.71 0.00 0.00 4.08
3204 4106 5.280678 CGACGCTGTTAAGAAAATTACTTGC 59.719 40.000 7.71 3.15 0.00 4.01
3205 4107 6.360329 ACGACGCTGTTAAGAAAATTACTTG 58.640 36.000 0.00 0.00 0.00 3.16
3206 4108 6.535274 ACGACGCTGTTAAGAAAATTACTT 57.465 33.333 0.00 3.86 0.00 2.24
3207 4109 7.823149 ATACGACGCTGTTAAGAAAATTACT 57.177 32.000 0.00 0.00 0.00 2.24
3208 4110 7.424452 CCAATACGACGCTGTTAAGAAAATTAC 59.576 37.037 0.00 0.00 0.00 1.89
3209 4111 7.413219 CCCAATACGACGCTGTTAAGAAAATTA 60.413 37.037 0.00 0.00 0.00 1.40
3210 4112 6.311723 CCAATACGACGCTGTTAAGAAAATT 58.688 36.000 0.00 0.00 0.00 1.82
3211 4113 5.163794 CCCAATACGACGCTGTTAAGAAAAT 60.164 40.000 0.00 0.00 0.00 1.82
3212 4114 4.152759 CCCAATACGACGCTGTTAAGAAAA 59.847 41.667 0.00 0.00 0.00 2.29
3213 4115 3.680937 CCCAATACGACGCTGTTAAGAAA 59.319 43.478 0.00 0.00 0.00 2.52
3214 4116 3.255725 CCCAATACGACGCTGTTAAGAA 58.744 45.455 0.00 0.00 0.00 2.52
3215 4117 2.883574 CCCAATACGACGCTGTTAAGA 58.116 47.619 0.00 0.00 0.00 2.10
3239 4159 2.681097 GCCAACACTATCTTCAGGTCCC 60.681 54.545 0.00 0.00 0.00 4.46
3352 4273 9.261180 TCTATCTTTAGCAAATAGGATTGAACG 57.739 33.333 0.00 0.00 31.84 3.95
3364 4285 7.224297 ACAAGGTTGTCTCTATCTTTAGCAAA 58.776 34.615 0.00 0.00 36.50 3.68
3381 4302 3.380004 TGGTCTTGCAAGTAACAAGGTTG 59.620 43.478 25.19 0.00 43.79 3.77
3385 4306 5.695851 AATCTGGTCTTGCAAGTAACAAG 57.304 39.130 25.19 18.99 44.76 3.16
3457 4378 9.651913 GTATTTTTCAATCAAAGGGCAAATAGA 57.348 29.630 0.00 0.00 0.00 1.98
3481 4403 9.710818 AAATACTAGATGACCAAAGGAGTAGTA 57.289 33.333 0.00 0.00 0.00 1.82
3555 4586 6.660521 TCCTGCTGATTCTTTTATGTTCATGT 59.339 34.615 0.00 0.00 0.00 3.21
3558 4589 7.370383 GTTTCCTGCTGATTCTTTTATGTTCA 58.630 34.615 0.00 0.00 0.00 3.18
3617 4653 5.009854 ACTTGTGTCCCTGAAAACATTTG 57.990 39.130 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.