Multiple sequence alignment - TraesCS6B01G104600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G104600 chr6B 100.000 7380 0 0 1 7380 84123379 84130758 0.000000e+00 13629.0
1 TraesCS6B01G104600 chr6B 88.776 98 9 1 232 327 39177977 39177880 1.300000e-22 119.0
2 TraesCS6B01G104600 chr6B 87.654 81 10 0 244 324 64854317 64854397 2.190000e-15 95.3
3 TraesCS6B01G104600 chr6B 91.304 69 2 4 228 294 446849815 446849881 2.840000e-14 91.6
4 TraesCS6B01G104600 chr6B 82.828 99 10 5 229 327 564057288 564057197 1.710000e-11 82.4
5 TraesCS6B01G104600 chr6A 92.713 6738 252 104 234 6803 47896955 47903621 0.000000e+00 9502.0
6 TraesCS6B01G104600 chrUn 94.168 4544 158 40 324 4790 143897691 143902204 0.000000e+00 6824.0
7 TraesCS6B01G104600 chrUn 95.828 1654 44 6 4795 6441 143902244 143903879 0.000000e+00 2649.0
8 TraesCS6B01G104600 chrUn 87.898 628 53 15 6751 7377 143905862 143906467 0.000000e+00 717.0
9 TraesCS6B01G104600 chrUn 83.834 433 51 8 1417 1846 104961782 104962198 1.930000e-105 394.0
10 TraesCS6B01G104600 chrUn 95.690 232 10 0 6490 6721 143904149 143904380 2.510000e-99 374.0
11 TraesCS6B01G104600 chrUn 74.616 717 100 43 1661 2302 75223049 75223758 2.660000e-59 241.0
12 TraesCS6B01G104600 chrUn 86.977 215 23 3 1 210 143897445 143897659 3.440000e-58 237.0
13 TraesCS6B01G104600 chrUn 80.095 211 36 6 11 216 143895414 143895623 1.280000e-32 152.0
14 TraesCS6B01G104600 chr1D 93.484 4128 192 35 1457 5551 113876192 113872109 0.000000e+00 6061.0
15 TraesCS6B01G104600 chr1D 85.666 1172 82 41 5652 6802 113871913 113870807 0.000000e+00 1155.0
16 TraesCS6B01G104600 chr1D 82.390 636 51 31 841 1447 113876897 113876294 1.430000e-136 497.0
17 TraesCS6B01G104600 chr1A 93.320 4132 208 29 1457 5551 121745370 121741270 0.000000e+00 6039.0
18 TraesCS6B01G104600 chr1A 90.482 830 53 13 5568 6385 121741179 121740364 0.000000e+00 1072.0
19 TraesCS6B01G104600 chr1A 83.333 312 28 17 841 1141 121746087 121745789 4.390000e-67 267.0
20 TraesCS6B01G104600 chr1A 82.979 282 27 9 1173 1447 121745787 121745520 1.240000e-57 235.0
21 TraesCS6B01G104600 chr1B 94.180 3969 179 17 1622 5551 173977189 173973234 0.000000e+00 6002.0
22 TraesCS6B01G104600 chr1B 85.188 1168 97 40 5656 6802 173973033 173971921 0.000000e+00 1129.0
23 TraesCS6B01G104600 chr1B 81.064 639 62 33 841 1447 173977993 173977382 8.730000e-124 455.0
24 TraesCS6B01G104600 chr3D 89.915 1408 92 19 1545 2923 7924960 7923574 0.000000e+00 1768.0
25 TraesCS6B01G104600 chr7D 84.223 431 48 6 1422 1849 27866491 27866078 1.150000e-107 401.0
26 TraesCS6B01G104600 chr7D 90.141 71 7 0 257 327 92223736 92223666 7.880000e-15 93.5
27 TraesCS6B01G104600 chr4A 82.450 302 41 9 1548 1846 696397859 696398151 3.420000e-63 254.0
28 TraesCS6B01G104600 chr3B 78.710 310 64 2 3347 3655 525608744 525609052 9.710000e-49 206.0
29 TraesCS6B01G104600 chr5A 88.298 94 8 3 232 324 443587069 443586978 7.830000e-20 110.0
30 TraesCS6B01G104600 chr5B 85.714 98 14 0 227 324 263580149 263580246 3.640000e-18 104.0
31 TraesCS6B01G104600 chr2B 85.567 97 14 0 231 327 793431524 793431428 1.310000e-17 102.0
32 TraesCS6B01G104600 chr2B 83.168 101 13 4 224 324 627063344 627063440 1.020000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G104600 chr6B 84123379 84130758 7379 False 13629.000000 13629 100.000000 1 7380 1 chr6B.!!$F2 7379
1 TraesCS6B01G104600 chr6A 47896955 47903621 6666 False 9502.000000 9502 92.713000 234 6803 1 chr6A.!!$F1 6569
2 TraesCS6B01G104600 chrUn 143895414 143906467 11053 False 1825.500000 6824 90.109333 1 7377 6 chrUn.!!$F3 7376
3 TraesCS6B01G104600 chrUn 75223049 75223758 709 False 241.000000 241 74.616000 1661 2302 1 chrUn.!!$F1 641
4 TraesCS6B01G104600 chr1D 113870807 113876897 6090 True 2571.000000 6061 87.180000 841 6802 3 chr1D.!!$R1 5961
5 TraesCS6B01G104600 chr1A 121740364 121746087 5723 True 1903.250000 6039 87.528500 841 6385 4 chr1A.!!$R1 5544
6 TraesCS6B01G104600 chr1B 173971921 173977993 6072 True 2528.666667 6002 86.810667 841 6802 3 chr1B.!!$R1 5961
7 TraesCS6B01G104600 chr3D 7923574 7924960 1386 True 1768.000000 1768 89.915000 1545 2923 1 chr3D.!!$R1 1378

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 2293 0.036732 TGCGGGAAAGCTTGTGATCT 59.963 50.000 0.0 0.0 38.13 2.75 F
1454 3727 0.182537 TTGGGGGATGTTATCTGCCG 59.817 55.000 0.0 0.0 0.00 5.69 F
1584 3868 0.255318 AAGCCAAGCAGAGGATGGAG 59.745 55.000 0.0 0.0 36.27 3.86 F
2417 4793 0.262876 AAATCCCTGATGCTTCCCCC 59.737 55.000 0.0 0.0 0.00 5.40 F
2456 4832 1.165270 GCCCAACGTCAAGCTATGTT 58.835 50.000 0.0 0.0 0.00 2.71 F
3684 6069 2.033049 GCCACATGCTTAGATTGCTCTG 59.967 50.000 0.0 0.0 36.87 3.35 F
3688 6073 2.299993 TGCTTAGATTGCTCTGTCCG 57.700 50.000 0.0 0.0 32.66 4.79 F
4520 6916 1.484653 CAGGGTCCAATGTATGTCGGA 59.515 52.381 0.0 0.0 0.00 4.55 F
6111 8649 0.417437 TCCTCAAGGGTCTCATGGGA 59.583 55.000 0.0 0.0 36.25 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 3865 0.460987 CGGTCAGCAACTGATCCTCC 60.461 60.000 0.00 0.00 42.73 4.30 R
2417 4793 1.442857 GCGGATAGAGTGGCGATCG 60.443 63.158 11.69 11.69 30.23 3.69 R
2456 4832 2.335681 TACCTGGGACACTTGGATCA 57.664 50.000 0.00 0.00 0.00 2.92 R
4038 6434 1.425066 TGATGCTGGAAACCTGGTCTT 59.575 47.619 0.00 0.00 0.00 3.01 R
4407 6803 3.071457 TCATGATGAACACAGACACCACT 59.929 43.478 0.00 0.00 0.00 4.00 R
4499 6895 1.475034 CCGACATACATTGGACCCTGG 60.475 57.143 0.00 0.00 0.00 4.45 R
5562 8004 2.681848 AGAAACATAGCTCTGCACATGC 59.318 45.455 0.00 0.00 42.50 4.06 R
6264 8803 0.382158 CAGATACTCTTGAGCGCCGA 59.618 55.000 2.29 0.00 0.00 5.54 R
6962 11274 1.072965 AGGGCCAGTTCTCTTTCACAG 59.927 52.381 6.18 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 1907 4.735822 TCCGTTGCATAAACAAGAAAAACG 59.264 37.500 0.00 0.00 38.84 3.60
26 1908 4.501198 CCGTTGCATAAACAAGAAAAACGT 59.499 37.500 0.00 0.00 38.84 3.99
27 1909 5.411222 CGTTGCATAAACAAGAAAAACGTG 58.589 37.500 0.00 0.00 38.84 4.49
29 1911 6.557711 CGTTGCATAAACAAGAAAAACGTGAG 60.558 38.462 0.00 0.00 38.84 3.51
69 2104 5.262455 AGCCCTTCTCAAACTCCTTATTT 57.738 39.130 0.00 0.00 0.00 1.40
70 2105 5.012893 AGCCCTTCTCAAACTCCTTATTTG 58.987 41.667 0.00 0.00 38.21 2.32
117 2154 5.616488 TCAGGCACCTCGTTATTTAAAAC 57.384 39.130 0.00 0.00 0.00 2.43
120 2157 5.180492 CAGGCACCTCGTTATTTAAAACTCA 59.820 40.000 0.00 0.00 0.00 3.41
149 2186 5.140747 AGTCTAGACTTGCAATCGAACTT 57.859 39.130 20.00 0.00 38.83 2.66
150 2187 5.542779 AGTCTAGACTTGCAATCGAACTTT 58.457 37.500 20.00 0.00 38.83 2.66
151 2188 5.406780 AGTCTAGACTTGCAATCGAACTTTG 59.593 40.000 20.00 0.00 38.83 2.77
156 2193 2.712077 GCAATCGAACTTTGCACCG 58.288 52.632 15.51 0.00 46.78 4.94
157 2194 0.040425 GCAATCGAACTTTGCACCGT 60.040 50.000 15.51 0.00 46.78 4.83
184 2221 9.267096 CTATTTCTTTCTCGTGCACTTAATTTC 57.733 33.333 16.19 0.00 0.00 2.17
210 2247 6.585416 GCATATGATTTGAAACCCAGGAATT 58.415 36.000 6.97 0.00 0.00 2.17
211 2248 7.049754 GCATATGATTTGAAACCCAGGAATTT 58.950 34.615 6.97 0.00 0.00 1.82
212 2249 7.225341 GCATATGATTTGAAACCCAGGAATTTC 59.775 37.037 6.97 8.55 35.73 2.17
214 2251 6.100404 TGATTTGAAACCCAGGAATTTCAG 57.900 37.500 14.97 0.00 43.66 3.02
216 2253 5.789643 TTTGAAACCCAGGAATTTCAGAG 57.210 39.130 14.97 0.00 43.66 3.35
217 2254 4.453480 TGAAACCCAGGAATTTCAGAGT 57.547 40.909 12.59 0.00 39.34 3.24
222 2259 5.520748 ACCCAGGAATTTCAGAGTAACAT 57.479 39.130 0.00 0.00 0.00 2.71
224 2261 6.415573 ACCCAGGAATTTCAGAGTAACATAC 58.584 40.000 0.00 0.00 0.00 2.39
225 2262 6.012858 ACCCAGGAATTTCAGAGTAACATACA 60.013 38.462 0.00 0.00 0.00 2.29
228 2265 8.960591 CCAGGAATTTCAGAGTAACATACAATT 58.039 33.333 0.00 0.00 0.00 2.32
256 2293 0.036732 TGCGGGAAAGCTTGTGATCT 59.963 50.000 0.00 0.00 38.13 2.75
291 2328 1.842720 TGACAGTACAACGAACACCG 58.157 50.000 0.00 0.00 45.44 4.94
296 2333 2.803956 CAGTACAACGAACACCGGAAAT 59.196 45.455 9.46 0.00 43.93 2.17
302 2340 6.173191 ACAACGAACACCGGAAATAATAAG 57.827 37.500 9.46 0.00 43.93 1.73
314 2352 9.635404 ACCGGAAATAATAAGAATTACATCCAA 57.365 29.630 9.46 0.00 36.41 3.53
345 2383 6.108015 AGAACAATGAAACACACTGCATTTT 58.892 32.000 0.00 0.00 0.00 1.82
433 2476 1.303561 GGAGCATGGTTGGTGAGCA 60.304 57.895 0.00 0.00 40.58 4.26
527 2588 0.894835 ACATGGCATTTCCGTTTCCC 59.105 50.000 0.00 0.00 37.80 3.97
564 2626 2.888834 ACAAATCAACACAACCAGCC 57.111 45.000 0.00 0.00 0.00 4.85
596 2658 4.168101 ACCCACTGACTGATAAGGAAAGA 58.832 43.478 0.00 0.00 0.00 2.52
597 2659 4.597507 ACCCACTGACTGATAAGGAAAGAA 59.402 41.667 0.00 0.00 0.00 2.52
634 2697 2.375345 ATTTCGGTCCGGCCTCCAT 61.375 57.895 12.29 0.18 34.25 3.41
838 2901 1.992947 GCGCGTGCGTATGTAAGAA 59.007 52.632 16.27 0.00 42.09 2.52
853 2916 0.252927 AAGAAGGGAGGAGTGGAGGG 60.253 60.000 0.00 0.00 0.00 4.30
942 3019 1.289244 GGGGATCTGGGAATGGTGGT 61.289 60.000 0.00 0.00 0.00 4.16
1039 3135 4.660938 GGTGGGGTGTGAGGGTGC 62.661 72.222 0.00 0.00 0.00 5.01
1169 3271 0.398381 CCTCCCCCTCTCTCTTCCTG 60.398 65.000 0.00 0.00 0.00 3.86
1177 3289 0.336392 TCTCTCTTCCTGCCTGCCTA 59.664 55.000 0.00 0.00 0.00 3.93
1194 3306 2.479560 GCCTAAATTTGTCGGTGCCATC 60.480 50.000 0.00 0.00 0.00 3.51
1205 3317 1.078759 GGTGCCATCTCTGTTCGTCG 61.079 60.000 0.00 0.00 0.00 5.12
1218 3330 2.884087 TTCGTCGCGGCTCCTTCATC 62.884 60.000 9.90 0.00 0.00 2.92
1265 3389 2.094659 CGATCTGGTGTGCGTGGAC 61.095 63.158 0.00 0.00 0.00 4.02
1281 3405 0.953960 GGACCTAGGTTGCGGTGTTG 60.954 60.000 17.53 0.00 32.62 3.33
1306 3430 0.486879 AACAGCTCCAATTTCCCCCA 59.513 50.000 0.00 0.00 0.00 4.96
1333 3457 0.706433 ATGAATCTGTGGGGGTGCTT 59.294 50.000 0.00 0.00 0.00 3.91
1338 3462 1.675641 CTGTGGGGGTGCTTGTAGC 60.676 63.158 0.00 0.00 42.82 3.58
1415 3550 0.944311 CCCGTTCGTGTGAGGAACAG 60.944 60.000 9.19 0.00 41.55 3.16
1440 3575 0.967380 GAGTGGTGGAGCAATTGGGG 60.967 60.000 7.72 0.00 0.00 4.96
1447 3582 1.643286 TGGAGCAATTGGGGGATGTTA 59.357 47.619 7.72 0.00 0.00 2.41
1452 3725 2.036346 GCAATTGGGGGATGTTATCTGC 59.964 50.000 7.72 0.00 0.00 4.26
1453 3726 2.629617 CAATTGGGGGATGTTATCTGCC 59.370 50.000 0.00 0.00 0.00 4.85
1454 3727 0.182537 TTGGGGGATGTTATCTGCCG 59.817 55.000 0.00 0.00 0.00 5.69
1455 3728 0.692756 TGGGGGATGTTATCTGCCGA 60.693 55.000 0.00 0.00 0.00 5.54
1488 3770 2.710096 ATCGGGACCATGTTTAGTGG 57.290 50.000 0.00 0.00 42.55 4.00
1560 3844 5.118990 CCGACACTTGGATCATAGTTTCAT 58.881 41.667 11.05 0.00 0.00 2.57
1577 3861 5.182760 AGTTTCATCTTTAAGCCAAGCAGAG 59.817 40.000 0.00 0.00 0.00 3.35
1580 3864 4.080129 TCATCTTTAAGCCAAGCAGAGGAT 60.080 41.667 0.00 0.00 0.00 3.24
1581 3865 3.614092 TCTTTAAGCCAAGCAGAGGATG 58.386 45.455 0.00 0.00 0.00 3.51
1582 3866 2.425143 TTAAGCCAAGCAGAGGATGG 57.575 50.000 0.00 0.00 37.29 3.51
1583 3867 1.583556 TAAGCCAAGCAGAGGATGGA 58.416 50.000 0.00 0.00 36.27 3.41
1584 3868 0.255318 AAGCCAAGCAGAGGATGGAG 59.745 55.000 0.00 0.00 36.27 3.86
1585 3869 1.153005 GCCAAGCAGAGGATGGAGG 60.153 63.158 0.00 0.00 36.27 4.30
1586 3870 1.630126 GCCAAGCAGAGGATGGAGGA 61.630 60.000 0.00 0.00 36.27 3.71
1590 3874 1.719529 AGCAGAGGATGGAGGATCAG 58.280 55.000 0.00 0.00 36.25 2.90
1601 3885 0.460987 GAGGATCAGTTGCTGACCGG 60.461 60.000 0.00 0.00 43.63 5.28
1636 3920 1.685224 GGGGATTGCTGTGTCTCCA 59.315 57.895 0.00 0.00 34.99 3.86
1670 3958 0.598158 TTTCGTACGGGTGTGTGCTC 60.598 55.000 16.52 0.00 0.00 4.26
1777 4078 0.888736 TTTCGGCCACTGGTGATGTG 60.889 55.000 2.24 0.00 35.39 3.21
1904 4205 4.822350 AGAGGCTCAAAGGTTTGTTTCTAC 59.178 41.667 18.26 0.00 39.18 2.59
1996 4320 2.785562 TGTGGTATACTGGTTGTTGCC 58.214 47.619 2.25 0.00 0.00 4.52
1999 4332 1.743394 GGTATACTGGTTGTTGCCTGC 59.257 52.381 2.25 0.00 0.00 4.85
2004 4337 1.741327 CTGGTTGTTGCCTGCTGCTT 61.741 55.000 0.00 0.00 42.00 3.91
2417 4793 0.262876 AAATCCCTGATGCTTCCCCC 59.737 55.000 0.00 0.00 0.00 5.40
2456 4832 1.165270 GCCCAACGTCAAGCTATGTT 58.835 50.000 0.00 0.00 0.00 2.71
3266 5649 7.658525 TGGCACCATAACATCTTTCATTAAT 57.341 32.000 0.00 0.00 0.00 1.40
3295 5678 2.205074 GTGTCCTGAGGTGCATAATCG 58.795 52.381 0.00 0.00 0.00 3.34
3501 5884 2.795175 TGACGTTTGAGTCACTCTCC 57.205 50.000 6.33 0.00 45.18 3.71
3684 6069 2.033049 GCCACATGCTTAGATTGCTCTG 59.967 50.000 0.00 0.00 36.87 3.35
3688 6073 2.299993 TGCTTAGATTGCTCTGTCCG 57.700 50.000 0.00 0.00 32.66 4.79
4038 6434 6.046593 ACTTGTGTATGTCTCTCGTGAAAAA 58.953 36.000 0.00 0.00 0.00 1.94
4098 6494 5.313520 TGAATGCATTGGTATGTGTTCTG 57.686 39.130 18.59 0.00 34.12 3.02
4103 6499 3.505680 GCATTGGTATGTGTTCTGTTCCA 59.494 43.478 0.00 0.00 34.12 3.53
4133 6529 4.107622 GCTTGTGTACATTGCATTGGATC 58.892 43.478 12.87 3.45 0.00 3.36
4460 6856 6.483640 ACACTTTCTTGTCTCTTACATGGTTC 59.516 38.462 0.00 0.00 38.10 3.62
4478 6874 4.263639 TGGTTCTCCTCTTTGCAGATCAAT 60.264 41.667 0.00 0.00 32.72 2.57
4499 6895 8.169977 TCAATATGAAAGGTTTAGATGGCATC 57.830 34.615 19.78 19.78 0.00 3.91
4520 6916 1.484653 CAGGGTCCAATGTATGTCGGA 59.515 52.381 0.00 0.00 0.00 4.55
4622 7018 2.111999 TTAAGAGCTGCTGCGGTGGT 62.112 55.000 7.01 0.84 45.42 4.16
4664 7060 7.506114 AGAGCTATATGGATAACAAAAACCGA 58.494 34.615 0.00 0.00 0.00 4.69
4785 7181 4.356405 TTCTTGGCATCTGAAGACAAGA 57.644 40.909 23.23 23.23 43.92 3.02
4853 7284 3.074412 TCGCTTTGGTTCTTGAGATTCC 58.926 45.455 0.00 0.00 0.00 3.01
4879 7310 1.795768 TGACTTGCTTCAGCTAACCG 58.204 50.000 0.00 0.00 42.66 4.44
5581 8101 1.399440 CGCATGTGCAGAGCTATGTTT 59.601 47.619 10.55 0.00 42.21 2.83
5874 8412 1.002087 GGGATCGACACCAACTTCACT 59.998 52.381 11.69 0.00 0.00 3.41
5967 8505 3.760035 CCTCCGACCACCGTCCTG 61.760 72.222 0.00 0.00 35.40 3.86
6027 8565 0.676466 CCATCAACAGCGGCTACCAA 60.676 55.000 0.26 0.00 0.00 3.67
6111 8649 0.417437 TCCTCAAGGGTCTCATGGGA 59.583 55.000 0.00 0.00 36.25 4.37
6264 8803 2.800985 CGTCAACTGCTGATCGGATCAT 60.801 50.000 20.21 3.66 38.85 2.45
6321 8869 0.473886 CGGAGGGGGTTAGATGGGAT 60.474 60.000 0.00 0.00 0.00 3.85
6346 8901 3.328382 TTGGTTGTAGATGAAGACGGG 57.672 47.619 0.00 0.00 0.00 5.28
6380 8935 6.706295 TCTAAATTAATTGTTGCCCCTTTGG 58.294 36.000 0.39 0.00 37.09 3.28
6385 8940 1.044611 TTGTTGCCCCTTTGGTTAGC 58.955 50.000 0.00 0.00 36.04 3.09
6410 8994 0.399454 ATGCTGCTGAGAACCACTGT 59.601 50.000 0.00 0.00 0.00 3.55
6473 9060 3.375207 CCCCTTTCCCCCATTTGTGATAT 60.375 47.826 0.00 0.00 0.00 1.63
6593 9447 3.064207 GCAATTCTAGTGTCAACCGTGA 58.936 45.455 0.00 0.00 0.00 4.35
6637 9491 0.032130 CTGCCTGATTGCATGATGCC 59.968 55.000 15.70 0.00 44.23 4.40
6700 9556 1.139520 GAATGGGCGTGGCAATGTC 59.860 57.895 0.00 0.00 0.00 3.06
6731 9599 2.762535 TGTTTGGTCTGCTAGTAGCC 57.237 50.000 19.41 8.43 41.51 3.93
6747 9615 1.848652 AGCCTGCTTTGATGCTTGAT 58.151 45.000 0.00 0.00 0.00 2.57
6748 9616 1.749634 AGCCTGCTTTGATGCTTGATC 59.250 47.619 0.00 0.00 0.00 2.92
6749 9617 1.533338 GCCTGCTTTGATGCTTGATCG 60.533 52.381 0.00 0.00 33.17 3.69
6759 11071 1.291184 TGCTTGATCGAACACTGCCG 61.291 55.000 14.25 0.00 0.00 5.69
6803 11115 0.463654 TCAAATCGAGGCCCATTCGG 60.464 55.000 12.42 0.00 38.54 4.30
6814 11126 1.394266 CCCATTCGGCCATTCCCAAG 61.394 60.000 2.24 0.00 0.00 3.61
6819 11131 3.521796 GGCCATTCCCAAGAGCGC 61.522 66.667 0.00 0.00 0.00 5.92
6820 11132 2.439156 GCCATTCCCAAGAGCGCT 60.439 61.111 11.27 11.27 0.00 5.92
6828 11140 0.962356 CCCAAGAGCGCTGAATTGGT 60.962 55.000 29.55 3.36 40.51 3.67
6830 11142 1.446907 CAAGAGCGCTGAATTGGTCT 58.553 50.000 18.48 0.00 44.25 3.85
6832 11144 0.610174 AGAGCGCTGAATTGGTCTCA 59.390 50.000 18.48 0.00 38.49 3.27
6839 11151 3.181513 CGCTGAATTGGTCTCATGAACAG 60.182 47.826 0.00 0.00 41.42 3.16
6850 11162 4.064388 TCTCATGAACAGCAAATTCGTGA 58.936 39.130 14.91 14.91 45.47 4.35
6854 11166 6.038985 TCATGAACAGCAAATTCGTGAAAAA 58.961 32.000 13.89 0.00 44.97 1.94
6881 11193 7.603784 ACAGCAAAAACAAGTTCAAAGAAATCT 59.396 29.630 0.00 0.00 0.00 2.40
6882 11194 7.901377 CAGCAAAAACAAGTTCAAAGAAATCTG 59.099 33.333 0.00 0.00 0.00 2.90
6883 11195 6.684131 GCAAAAACAAGTTCAAAGAAATCTGC 59.316 34.615 0.00 0.00 0.00 4.26
6884 11196 7.413328 GCAAAAACAAGTTCAAAGAAATCTGCT 60.413 33.333 0.00 0.00 0.00 4.24
6885 11197 8.445493 CAAAAACAAGTTCAAAGAAATCTGCTT 58.555 29.630 0.00 0.00 0.00 3.91
6939 11251 2.406130 AGGTGCATGCAAATTTTCACG 58.594 42.857 24.58 0.00 0.00 4.35
6943 11255 2.412429 TGCATGCAAATTTTCACGATGC 59.588 40.909 20.30 7.63 36.19 3.91
6946 11258 4.505191 GCATGCAAATTTTCACGATGCTAT 59.495 37.500 14.21 0.00 37.86 2.97
6962 11274 2.428171 TGCTATGGCATTTTGAGAAGCC 59.572 45.455 4.78 0.00 44.28 4.35
6966 11278 2.358939 GGCATTTTGAGAAGCCTGTG 57.641 50.000 0.00 0.00 43.70 3.66
6972 11284 5.458891 CATTTTGAGAAGCCTGTGAAAGAG 58.541 41.667 0.00 0.00 0.00 2.85
6975 11287 3.733337 TGAGAAGCCTGTGAAAGAGAAC 58.267 45.455 0.00 0.00 0.00 3.01
6988 11300 1.734655 AGAGAACTGGCCCTCAAAGA 58.265 50.000 0.00 0.00 32.07 2.52
6994 11306 2.587522 ACTGGCCCTCAAAGAAACTTC 58.412 47.619 0.00 0.00 0.00 3.01
6995 11307 2.091885 ACTGGCCCTCAAAGAAACTTCA 60.092 45.455 0.00 0.00 0.00 3.02
7040 11352 4.815308 TGATTTTGTTTTGTTGGGCATGAG 59.185 37.500 0.00 0.00 0.00 2.90
7046 11358 0.322816 TTGTTGGGCATGAGCTCCTC 60.323 55.000 12.15 0.00 41.98 3.71
7050 11362 1.340399 TGGGCATGAGCTCCTCGAAT 61.340 55.000 12.15 0.00 41.98 3.34
7057 11369 4.788840 GCATGAGCTCCTCGAATTTCATTG 60.789 45.833 12.15 0.00 37.91 2.82
7087 11399 1.726853 AATTGCACGCTCCTACTGAC 58.273 50.000 0.00 0.00 0.00 3.51
7109 11421 2.833794 TGTCTCTTCCACCAAACTTCG 58.166 47.619 0.00 0.00 0.00 3.79
7115 11427 3.759618 TCTTCCACCAAACTTCGTGTTTT 59.240 39.130 6.57 0.00 45.69 2.43
7134 11446 6.019479 GTGTTTTCTCGTATGTGATGATCCTC 60.019 42.308 0.00 0.00 0.00 3.71
7137 11449 5.697473 TCTCGTATGTGATGATCCTCTTC 57.303 43.478 0.00 0.00 0.00 2.87
7149 11461 6.385176 TGATGATCCTCTTCCATGTTTAGACT 59.615 38.462 0.00 0.00 0.00 3.24
7152 11464 7.126061 TGATCCTCTTCCATGTTTAGACTCTA 58.874 38.462 0.00 0.00 0.00 2.43
7154 11466 9.303116 GATCCTCTTCCATGTTTAGACTCTATA 57.697 37.037 0.00 0.00 0.00 1.31
7191 11503 7.434013 GGAAACACGTTGAACAAAGTATTTCAT 59.566 33.333 25.29 4.33 43.17 2.57
7227 11539 9.897744 CATTCATTAATCGTTAGTGGCAATATT 57.102 29.630 0.00 0.00 0.00 1.28
7234 11546 8.445275 AATCGTTAGTGGCAATATTACAATGA 57.555 30.769 0.00 0.00 0.00 2.57
7243 11555 9.585099 GTGGCAATATTACAATGATTTTCTTGA 57.415 29.630 0.00 0.00 0.00 3.02
7284 11596 3.432252 GTGTAAACAACGGTGAGATGAGG 59.568 47.826 7.88 0.00 0.00 3.86
7287 11599 1.296392 CAACGGTGAGATGAGGGCA 59.704 57.895 0.00 0.00 0.00 5.36
7313 11625 4.147449 CACTCATCAGCGGCCCGA 62.147 66.667 7.68 0.00 0.00 5.14
7341 11653 3.287954 ATGCCCTCCCTCCTCCCAA 62.288 63.158 0.00 0.00 0.00 4.12
7342 11654 2.368878 GCCCTCCCTCCTCCCAAT 60.369 66.667 0.00 0.00 0.00 3.16
7345 11657 1.348775 CCCTCCCTCCTCCCAATCAC 61.349 65.000 0.00 0.00 0.00 3.06
7375 11687 4.687215 GTGCCTCACCGCTGCTCA 62.687 66.667 0.00 0.00 0.00 4.26
7376 11688 4.687215 TGCCTCACCGCTGCTCAC 62.687 66.667 0.00 0.00 0.00 3.51
7378 11690 4.767255 CCTCACCGCTGCTCACCC 62.767 72.222 0.00 0.00 0.00 4.61
7379 11691 4.007644 CTCACCGCTGCTCACCCA 62.008 66.667 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.331235 CGTTTTTCTTGTTTATGCAACGGAC 60.331 40.000 0.00 0.00 38.36 4.79
2 3 4.735822 CGTTTTTCTTGTTTATGCAACGGA 59.264 37.500 0.00 0.00 38.36 4.69
3 4 4.501198 ACGTTTTTCTTGTTTATGCAACGG 59.499 37.500 0.00 0.00 39.97 4.44
4 5 5.228220 TCACGTTTTTCTTGTTTATGCAACG 59.772 36.000 0.00 0.00 41.11 4.10
5 6 6.470877 TCTCACGTTTTTCTTGTTTATGCAAC 59.529 34.615 0.00 0.00 35.71 4.17
7 8 6.125327 TCTCACGTTTTTCTTGTTTATGCA 57.875 33.333 0.00 0.00 0.00 3.96
25 1907 9.914131 GGGCTTATGGAAATTATTAAATCTCAC 57.086 33.333 0.00 0.00 0.00 3.51
26 1908 9.881773 AGGGCTTATGGAAATTATTAAATCTCA 57.118 29.630 0.00 0.00 0.00 3.27
69 2104 4.410555 AGGGCCTTGGTGTTTAAAAATTCA 59.589 37.500 0.00 0.00 0.00 2.57
70 2105 4.968259 AGGGCCTTGGTGTTTAAAAATTC 58.032 39.130 0.00 0.00 0.00 2.17
77 2113 2.962421 CTGAAAAGGGCCTTGGTGTTTA 59.038 45.455 21.72 6.14 0.00 2.01
83 2119 3.380995 GCCTGAAAAGGGCCTTGG 58.619 61.111 21.72 17.51 43.49 3.61
139 2176 1.531149 AGACGGTGCAAAGTTCGATTG 59.469 47.619 0.00 0.00 0.00 2.67
144 2181 5.358298 AAGAAATAGACGGTGCAAAGTTC 57.642 39.130 0.00 0.00 0.00 3.01
149 2186 3.678072 CGAGAAAGAAATAGACGGTGCAA 59.322 43.478 0.00 0.00 0.00 4.08
150 2187 3.250744 CGAGAAAGAAATAGACGGTGCA 58.749 45.455 0.00 0.00 0.00 4.57
151 2188 3.060895 CACGAGAAAGAAATAGACGGTGC 59.939 47.826 0.00 0.00 0.00 5.01
155 2192 3.921021 AGTGCACGAGAAAGAAATAGACG 59.079 43.478 12.01 0.00 0.00 4.18
156 2193 5.847670 AAGTGCACGAGAAAGAAATAGAC 57.152 39.130 12.01 0.00 0.00 2.59
157 2194 8.547967 AATTAAGTGCACGAGAAAGAAATAGA 57.452 30.769 12.01 0.00 0.00 1.98
184 2221 3.243501 CCTGGGTTTCAAATCATATGCGG 60.244 47.826 0.00 0.00 0.00 5.69
274 2311 0.746063 TCCGGTGTTCGTTGTACTGT 59.254 50.000 0.00 0.00 37.11 3.55
278 2315 7.095910 TCTTATTATTTCCGGTGTTCGTTGTA 58.904 34.615 0.00 0.00 37.11 2.41
314 2352 7.596494 CAGTGTGTTTCATTGTTCTATGGATT 58.404 34.615 0.00 0.00 0.00 3.01
319 2357 6.579666 ATGCAGTGTGTTTCATTGTTCTAT 57.420 33.333 0.00 0.00 36.38 1.98
322 2360 5.971895 AAATGCAGTGTGTTTCATTGTTC 57.028 34.783 0.00 0.00 36.38 3.18
345 2383 1.493772 CGCGAATTCCGGCATACTTA 58.506 50.000 0.00 0.00 39.04 2.24
375 2418 6.349528 GGTTTAGAGTTCAGAGTCTACCTCAC 60.350 46.154 12.73 5.21 43.12 3.51
376 2419 5.711036 GGTTTAGAGTTCAGAGTCTACCTCA 59.289 44.000 12.73 1.03 43.12 3.86
377 2420 5.163733 CGGTTTAGAGTTCAGAGTCTACCTC 60.164 48.000 0.00 0.00 37.50 3.85
378 2421 4.701171 CGGTTTAGAGTTCAGAGTCTACCT 59.299 45.833 0.00 0.00 37.50 3.08
379 2422 4.699257 TCGGTTTAGAGTTCAGAGTCTACC 59.301 45.833 0.00 0.00 37.50 3.18
433 2476 4.974645 TGTTAGACCCAGAGAACATTGT 57.025 40.909 0.00 0.00 0.00 2.71
505 2566 0.388391 AAACGGAAATGCCATGTGCG 60.388 50.000 7.27 7.27 45.60 5.34
544 2606 2.481104 CGGCTGGTTGTGTTGATTTGTT 60.481 45.455 0.00 0.00 0.00 2.83
596 2658 3.083997 CCCCTACCTGCCGCTCTT 61.084 66.667 0.00 0.00 0.00 2.85
838 2901 3.700350 CCCCCTCCACTCCTCCCT 61.700 72.222 0.00 0.00 0.00 4.20
942 3019 2.432146 CGAGAGGAATTGGTGGAGATCA 59.568 50.000 0.00 0.00 0.00 2.92
989 3077 1.066787 TCACTCGAGCGAGAGAGAGAA 60.067 52.381 24.81 0.00 44.53 2.87
1169 3271 1.135402 CACCGACAAATTTAGGCAGGC 60.135 52.381 6.47 0.00 0.00 4.85
1177 3289 2.489329 CAGAGATGGCACCGACAAATTT 59.511 45.455 0.00 0.00 0.00 1.82
1194 3306 2.876645 GAGCCGCGACGAACAGAG 60.877 66.667 8.23 0.00 0.00 3.35
1244 3356 1.423721 CCACGCACACCAGATCGATG 61.424 60.000 0.54 0.00 0.00 3.84
1265 3389 1.674322 CCCAACACCGCAACCTAGG 60.674 63.158 7.41 7.41 0.00 3.02
1281 3405 2.492088 GGAAATTGGAGCTGTTACACCC 59.508 50.000 0.00 0.00 0.00 4.61
1306 3430 4.165372 ACCCCCACAGATTCATACGTAATT 59.835 41.667 0.00 0.00 0.00 1.40
1333 3457 1.438651 GAATCCAACGCACTGCTACA 58.561 50.000 0.00 0.00 0.00 2.74
1338 3462 1.990799 TCTACGAATCCAACGCACTG 58.009 50.000 0.00 0.00 0.00 3.66
1339 3463 2.961526 ATCTACGAATCCAACGCACT 57.038 45.000 0.00 0.00 0.00 4.40
1415 3550 0.531974 TTGCTCCACCACTCGTCAAC 60.532 55.000 0.00 0.00 0.00 3.18
1440 3575 2.158957 TGAGGTTCGGCAGATAACATCC 60.159 50.000 1.82 0.00 35.98 3.51
1447 3582 1.982395 TCGGTGAGGTTCGGCAGAT 60.982 57.895 0.00 0.00 0.00 2.90
1452 3725 1.599667 CGATATGTCGGTGAGGTTCGG 60.600 57.143 3.61 0.00 44.00 4.30
1453 3726 1.755161 CGATATGTCGGTGAGGTTCG 58.245 55.000 3.61 0.00 44.00 3.95
1488 3770 0.824759 AAGGTAGGCTCATCGGTGAC 59.175 55.000 0.00 0.00 0.00 3.67
1560 3844 3.614092 CATCCTCTGCTTGGCTTAAAGA 58.386 45.455 0.00 0.00 0.00 2.52
1577 3861 1.487976 TCAGCAACTGATCCTCCATCC 59.512 52.381 0.00 0.00 35.39 3.51
1580 3864 0.615331 GGTCAGCAACTGATCCTCCA 59.385 55.000 0.00 0.00 42.73 3.86
1581 3865 0.460987 CGGTCAGCAACTGATCCTCC 60.461 60.000 0.00 0.00 42.73 4.30
1582 3866 0.460987 CCGGTCAGCAACTGATCCTC 60.461 60.000 0.00 0.00 42.73 3.71
1583 3867 1.599047 CCGGTCAGCAACTGATCCT 59.401 57.895 0.00 0.00 42.73 3.24
1584 3868 2.109126 GCCGGTCAGCAACTGATCC 61.109 63.158 1.90 3.84 42.73 3.36
1585 3869 2.109126 GGCCGGTCAGCAACTGATC 61.109 63.158 0.00 0.00 42.73 2.92
1586 3870 2.045926 GGCCGGTCAGCAACTGAT 60.046 61.111 0.00 0.00 42.73 2.90
1590 3874 0.814010 ATAATCGGCCGGTCAGCAAC 60.814 55.000 27.83 0.00 0.00 4.17
1601 3885 1.453155 CCCCATGTAGCATAATCGGC 58.547 55.000 0.00 0.00 0.00 5.54
1636 3920 2.297701 ACGAAATCACACAAGTTGCCT 58.702 42.857 1.81 0.00 0.00 4.75
1643 3927 2.136728 CACCCGTACGAAATCACACAA 58.863 47.619 18.76 0.00 0.00 3.33
1670 3958 4.572985 TCAGCAAGATCAAAACAAGGTG 57.427 40.909 0.00 0.00 0.00 4.00
1756 4057 1.303317 ATCACCAGTGGCCGAAACC 60.303 57.895 9.78 0.00 0.00 3.27
1777 4078 1.082756 CTCGTTGCAGGCGACAAAC 60.083 57.895 11.89 0.00 34.47 2.93
1996 4320 9.023967 GGTTTAATTTTATATGTCAAGCAGCAG 57.976 33.333 0.00 0.00 0.00 4.24
1999 4332 8.188139 ACGGGTTTAATTTTATATGTCAAGCAG 58.812 33.333 0.00 0.00 0.00 4.24
2004 4337 6.238429 GGCGACGGGTTTAATTTTATATGTCA 60.238 38.462 0.00 0.00 0.00 3.58
2116 4465 4.779489 TCAACATCTTCTTCCTCCTCATCA 59.221 41.667 0.00 0.00 0.00 3.07
2224 4599 1.554617 TGATGAGGTTCATGGCGAGAA 59.445 47.619 0.00 0.00 37.20 2.87
2417 4793 1.442857 GCGGATAGAGTGGCGATCG 60.443 63.158 11.69 11.69 30.23 3.69
2456 4832 2.335681 TACCTGGGACACTTGGATCA 57.664 50.000 0.00 0.00 0.00 2.92
3139 5520 4.981794 GGTACCATTTTGGAAACTGATCG 58.018 43.478 7.15 0.00 40.96 3.69
3266 5649 6.493189 TGCACCTCAGGACACATAATAATA 57.507 37.500 0.00 0.00 0.00 0.98
3295 5678 4.973168 TCCCTATCATACCTGCAACATTC 58.027 43.478 0.00 0.00 0.00 2.67
3495 5878 3.409026 AATTCTGCAGTTTCGGAGAGT 57.591 42.857 14.67 0.00 38.43 3.24
4014 6410 4.848562 TTCACGAGAGACATACACAAGT 57.151 40.909 0.00 0.00 0.00 3.16
4038 6434 1.425066 TGATGCTGGAAACCTGGTCTT 59.575 47.619 0.00 0.00 0.00 3.01
4098 6494 3.078594 ACACAAGCAAATTCGTGGAAC 57.921 42.857 0.00 0.00 33.62 3.62
4103 6499 3.980775 GCAATGTACACAAGCAAATTCGT 59.019 39.130 0.00 0.00 33.15 3.85
4407 6803 3.071457 TCATGATGAACACAGACACCACT 59.929 43.478 0.00 0.00 0.00 4.00
4460 6856 7.255173 CCTTTCATATTGATCTGCAAAGAGGAG 60.255 40.741 0.00 0.00 40.48 3.69
4478 6874 6.012337 TGGATGCCATCTAAACCTTTCATA 57.988 37.500 4.41 0.00 0.00 2.15
4499 6895 1.475034 CCGACATACATTGGACCCTGG 60.475 57.143 0.00 0.00 0.00 4.45
4664 7060 5.186797 AGAAGACTCGGTTCTCTTCATCATT 59.813 40.000 9.46 0.00 43.35 2.57
4785 7181 4.855715 AGTGATGCAGTATATACAGCGT 57.144 40.909 21.07 21.07 41.00 5.07
4810 7241 6.067669 CGAAGACGAAATAGAAGCATAATGC 58.932 40.000 0.00 0.00 42.38 3.56
4853 7284 3.257393 AGCTGAAGCAAGTCATAACTCG 58.743 45.455 4.90 0.00 45.16 4.18
4879 7310 4.768583 ACCTGATGAGATTCAGAAAGAGC 58.231 43.478 3.10 0.00 44.88 4.09
5562 8004 2.681848 AGAAACATAGCTCTGCACATGC 59.318 45.455 0.00 0.00 42.50 4.06
5581 8101 4.937620 AGCAATGCGAGATTTAACAAGAGA 59.062 37.500 0.00 0.00 0.00 3.10
5874 8412 0.948623 CGTTCGCCTTGGATGTGACA 60.949 55.000 0.00 0.00 0.00 3.58
5970 8508 0.533491 CCATGCCCACAAGGTTGATG 59.467 55.000 0.00 0.00 38.26 3.07
6111 8649 3.660111 GGCGTGCGGTTCTGCTTT 61.660 61.111 5.23 0.00 35.36 3.51
6264 8803 0.382158 CAGATACTCTTGAGCGCCGA 59.618 55.000 2.29 0.00 0.00 5.54
6410 8994 0.670546 GCTGCTGCAGGTTTCGTAGA 60.671 55.000 29.05 0.00 39.41 2.59
6447 9031 1.078656 CAAATGGGGGAAAGGGGAGAA 59.921 52.381 0.00 0.00 0.00 2.87
6453 9037 4.586001 CAGATATCACAAATGGGGGAAAGG 59.414 45.833 5.32 0.00 0.00 3.11
6454 9038 5.203528 ACAGATATCACAAATGGGGGAAAG 58.796 41.667 5.32 0.00 0.00 2.62
6473 9060 9.944376 AATATACTCTAAGCAACAAAGAACAGA 57.056 29.630 0.00 0.00 0.00 3.41
6505 9314 8.652463 TGTCACAGTGTGTATAAATACAATTCG 58.348 33.333 22.29 0.00 44.11 3.34
6637 9491 6.263344 CCATAGAACAATCACAATCAAGCTG 58.737 40.000 0.00 0.00 0.00 4.24
6700 9556 5.413833 AGCAGACCAAACATTATCAACTGAG 59.586 40.000 0.00 0.00 0.00 3.35
6731 9599 3.120095 TGTTCGATCAAGCATCAAAGCAG 60.120 43.478 0.00 0.00 36.85 4.24
6775 11087 1.699656 CCTCGATTTGACAGGCTGCG 61.700 60.000 15.89 9.05 0.00 5.18
6783 11095 0.657840 CGAATGGGCCTCGATTTGAC 59.342 55.000 9.40 0.00 38.61 3.18
6785 11097 2.024918 CCGAATGGGCCTCGATTTG 58.975 57.895 15.97 6.10 38.61 2.32
6803 11115 2.439156 AGCGCTCTTGGGAATGGC 60.439 61.111 2.64 0.00 0.00 4.40
6804 11116 0.677731 TTCAGCGCTCTTGGGAATGG 60.678 55.000 7.13 0.00 0.00 3.16
6805 11117 1.386533 ATTCAGCGCTCTTGGGAATG 58.613 50.000 16.49 0.52 0.00 2.67
6806 11118 1.747355 CAATTCAGCGCTCTTGGGAAT 59.253 47.619 7.13 10.77 0.00 3.01
6807 11119 1.167851 CAATTCAGCGCTCTTGGGAA 58.832 50.000 7.13 8.48 0.00 3.97
6808 11120 0.677731 CCAATTCAGCGCTCTTGGGA 60.678 55.000 25.10 11.65 35.54 4.37
6809 11121 0.962356 ACCAATTCAGCGCTCTTGGG 60.962 55.000 31.14 21.87 41.97 4.12
6810 11122 0.449388 GACCAATTCAGCGCTCTTGG 59.551 55.000 28.52 28.52 43.06 3.61
6814 11126 1.329906 CATGAGACCAATTCAGCGCTC 59.670 52.381 7.13 0.00 0.00 5.03
6819 11131 3.754850 TGCTGTTCATGAGACCAATTCAG 59.245 43.478 0.00 0.00 0.00 3.02
6820 11132 3.753815 TGCTGTTCATGAGACCAATTCA 58.246 40.909 0.00 0.00 0.00 2.57
6828 11140 4.064388 TCACGAATTTGCTGTTCATGAGA 58.936 39.130 0.00 0.00 0.00 3.27
6830 11142 4.827304 TTCACGAATTTGCTGTTCATGA 57.173 36.364 0.00 0.00 0.00 3.07
6854 11166 7.489574 TTTCTTTGAACTTGTTTTTGCTGTT 57.510 28.000 0.00 0.00 0.00 3.16
6962 11274 1.072965 AGGGCCAGTTCTCTTTCACAG 59.927 52.381 6.18 0.00 0.00 3.66
6966 11278 2.568623 TTGAGGGCCAGTTCTCTTTC 57.431 50.000 6.18 0.00 0.00 2.62
6972 11284 2.587522 AGTTTCTTTGAGGGCCAGTTC 58.412 47.619 6.18 0.00 0.00 3.01
6975 11287 2.586425 TGAAGTTTCTTTGAGGGCCAG 58.414 47.619 6.18 0.00 0.00 4.85
7002 11314 5.477510 ACAAAATCAAGTTCAAACAGTGCA 58.522 33.333 0.00 0.00 0.00 4.57
7006 11318 9.105206 CAACAAAACAAAATCAAGTTCAAACAG 57.895 29.630 0.00 0.00 0.00 3.16
7040 11352 3.959573 CTCCAATGAAATTCGAGGAGC 57.040 47.619 12.80 0.00 37.82 4.70
7046 11358 5.903764 TTTTTGTGCTCCAATGAAATTCG 57.096 34.783 0.00 0.00 31.22 3.34
7087 11399 3.248602 CGAAGTTTGGTGGAAGAGACAAG 59.751 47.826 0.00 0.00 0.00 3.16
7109 11421 5.812642 AGGATCATCACATACGAGAAAACAC 59.187 40.000 0.00 0.00 0.00 3.32
7115 11427 4.520874 GGAAGAGGATCATCACATACGAGA 59.479 45.833 10.44 0.00 33.80 4.04
7212 11524 9.515020 AAAATCATTGTAATATTGCCACTAACG 57.485 29.630 0.00 0.00 0.00 3.18
7227 11539 9.624697 CTCGGATTTTTCAAGAAAATCATTGTA 57.375 29.630 19.77 0.66 44.34 2.41
7229 11541 8.746922 TCTCGGATTTTTCAAGAAAATCATTG 57.253 30.769 19.77 12.09 44.34 2.82
7264 11576 3.000727 CCCTCATCTCACCGTTGTTTAC 58.999 50.000 0.00 0.00 0.00 2.01
7307 11619 4.820744 ATGGTGGCACATCGGGCC 62.821 66.667 20.82 0.00 46.67 5.80
7313 11625 2.043652 GAGGGCATGGTGGCACAT 60.044 61.111 20.82 8.29 45.76 3.21
7320 11632 2.367512 GAGGAGGGAGGGCATGGT 60.368 66.667 0.00 0.00 0.00 3.55
7359 11671 4.687215 GTGAGCAGCGGTGAGGCA 62.687 66.667 20.69 9.55 34.64 4.75
7362 11674 4.007644 TGGGTGAGCAGCGGTGAG 62.008 66.667 20.69 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.