Multiple sequence alignment - TraesCS6B01G104200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G104200 chr6B 100.000 3733 0 0 1 3733 83140709 83136977 0.000000e+00 6894
1 TraesCS6B01G104200 chr6B 89.141 792 76 2 3 786 437482063 437481274 0.000000e+00 977
2 TraesCS6B01G104200 chr6B 88.220 781 80 4 16 786 547005609 547004831 0.000000e+00 922
3 TraesCS6B01G104200 chr6B 80.000 1155 185 32 991 2114 84356878 84358017 0.000000e+00 811
4 TraesCS6B01G104200 chr6B 79.905 1055 172 29 1100 2127 84566058 84567099 0.000000e+00 737
5 TraesCS6B01G104200 chr6B 75.774 1131 182 61 1070 2159 64196307 64195228 1.560000e-133 486
6 TraesCS6B01G104200 chr6B 74.552 1061 206 46 1098 2118 77613805 77614841 4.490000e-109 405
7 TraesCS6B01G104200 chr6B 81.400 457 72 11 2325 2778 63767627 63767181 9.860000e-96 361
8 TraesCS6B01G104200 chr6B 80.044 456 81 6 2343 2793 64007863 64007413 2.780000e-86 329
9 TraesCS6B01G104200 chr6B 92.814 167 12 0 2164 2330 523346325 523346159 3.720000e-60 243
10 TraesCS6B01G104200 chr6B 88.983 118 10 1 2689 2803 84358441 84358558 3.890000e-30 143
11 TraesCS6B01G104200 chr6B 86.029 136 9 6 2687 2817 84134835 84134965 1.810000e-28 137
12 TraesCS6B01G104200 chrUn 93.391 1377 72 8 797 2168 26573942 26572580 0.000000e+00 2021
13 TraesCS6B01G104200 chrUn 93.129 1368 61 12 807 2165 26726435 26727778 0.000000e+00 1975
14 TraesCS6B01G104200 chrUn 95.446 505 22 1 2325 2829 26572584 26572081 0.000000e+00 804
15 TraesCS6B01G104200 chrUn 85.073 824 69 34 2866 3665 26728368 26729161 0.000000e+00 791
16 TraesCS6B01G104200 chrUn 94.653 505 26 1 2325 2829 26727777 26728280 0.000000e+00 782
17 TraesCS6B01G104200 chrUn 79.322 1151 202 26 987 2114 153436548 153435411 0.000000e+00 774
18 TraesCS6B01G104200 chrUn 77.610 1255 194 57 984 2165 143908175 143909415 0.000000e+00 680
19 TraesCS6B01G104200 chrUn 86.207 638 34 20 2866 3498 26572003 26571415 3.140000e-180 641
20 TraesCS6B01G104200 chrUn 77.960 1098 169 41 1102 2138 153494817 153493732 1.470000e-173 619
21 TraesCS6B01G104200 chrUn 79.306 865 152 23 1279 2127 331176330 331177183 6.950000e-162 580
22 TraesCS6B01G104200 chrUn 77.407 1080 168 53 1095 2136 102827634 102826593 1.160000e-159 573
23 TraesCS6B01G104200 chrUn 79.379 708 122 16 1447 2138 98357302 98356603 9.380000e-131 477
24 TraesCS6B01G104200 chrUn 80.963 457 74 9 2325 2778 102650884 102650438 2.130000e-92 350
25 TraesCS6B01G104200 chrUn 83.525 261 17 5 3484 3731 26570254 26570007 1.750000e-53 220
26 TraesCS6B01G104200 chrUn 81.467 259 31 10 3023 3266 143910097 143910353 2.940000e-46 196
27 TraesCS6B01G104200 chrUn 79.245 265 46 8 2544 2807 102501209 102501465 3.830000e-40 176
28 TraesCS6B01G104200 chrUn 88.356 146 10 4 2687 2826 143911226 143911370 6.410000e-38 169
29 TraesCS6B01G104200 chrUn 89.744 117 12 0 2687 2803 153434979 153434863 2.320000e-32 150
30 TraesCS6B01G104200 chrUn 77.169 219 33 7 3424 3630 26771200 26771413 1.100000e-20 111
31 TraesCS6B01G104200 chr5B 92.484 785 56 3 2 786 427174673 427175454 0.000000e+00 1120
32 TraesCS6B01G104200 chr5B 87.474 487 50 6 1 476 606885225 606884739 5.450000e-153 551
33 TraesCS6B01G104200 chr4B 92.249 787 57 4 1 786 585191652 585190869 0.000000e+00 1112
34 TraesCS6B01G104200 chr4B 88.317 796 81 4 1 786 660663203 660663996 0.000000e+00 944
35 TraesCS6B01G104200 chr1B 89.467 788 73 3 1 780 146771144 146771929 0.000000e+00 987
36 TraesCS6B01G104200 chr1B 91.860 172 13 1 2159 2330 649337125 649336955 4.820000e-59 239
37 TraesCS6B01G104200 chr1D 89.103 780 68 7 29 799 284248027 284247256 0.000000e+00 953
38 TraesCS6B01G104200 chr3B 88.331 797 80 7 1 786 23784689 23785483 0.000000e+00 944
39 TraesCS6B01G104200 chr4A 88.590 780 78 4 16 786 659018502 659019279 0.000000e+00 937
40 TraesCS6B01G104200 chr7B 87.975 790 90 4 2 788 484903113 484902326 0.000000e+00 928
41 TraesCS6B01G104200 chr7B 87.531 794 89 3 1 786 690596906 690596115 0.000000e+00 909
42 TraesCS6B01G104200 chr7B 86.902 794 93 4 1 786 690566211 690565421 0.000000e+00 880
43 TraesCS6B01G104200 chr6D 87.852 675 70 5 1 664 91849737 91850410 0.000000e+00 782
44 TraesCS6B01G104200 chr6A 77.477 1403 239 48 803 2138 48036367 48037759 0.000000e+00 769
45 TraesCS6B01G104200 chr6A 79.116 905 159 18 1065 1967 47701911 47702787 6.900000e-167 597
46 TraesCS6B01G104200 chr6A 75.580 1077 221 25 1094 2138 53398998 53397932 9.310000e-136 494
47 TraesCS6B01G104200 chr6A 76.180 890 149 46 1276 2132 34929762 34928903 9.650000e-111 411
48 TraesCS6B01G104200 chr6A 80.871 528 95 6 1613 2138 48087842 48088365 9.650000e-111 411
49 TraesCS6B01G104200 chr6A 80.658 486 70 13 2325 2808 48037783 48038246 4.590000e-94 355
50 TraesCS6B01G104200 chr6A 80.309 259 33 11 3023 3266 47957935 47958190 2.960000e-41 180
51 TraesCS6B01G104200 chr6A 88.636 132 15 0 2672 2803 47984850 47984981 1.070000e-35 161
52 TraesCS6B01G104200 chr2D 92.529 174 12 1 2160 2333 362930804 362930976 8.010000e-62 248
53 TraesCS6B01G104200 chr2D 89.362 188 16 4 2156 2343 387193864 387193681 2.240000e-57 233
54 TraesCS6B01G104200 chr2A 93.902 164 9 1 2164 2327 324614925 324615087 2.880000e-61 246
55 TraesCS6B01G104200 chr2A 93.333 165 11 0 2162 2326 70985748 70985584 1.040000e-60 244
56 TraesCS6B01G104200 chr2B 93.293 164 11 0 2164 2327 302928409 302928572 3.720000e-60 243
57 TraesCS6B01G104200 chr2B 93.333 165 10 1 2164 2328 486633197 486633360 3.720000e-60 243
58 TraesCS6B01G104200 chr4D 91.908 173 13 1 2155 2327 3590465 3590636 1.340000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G104200 chr6B 83136977 83140709 3732 True 6894.000000 6894 100.000000 1 3733 1 chr6B.!!$R4 3732
1 TraesCS6B01G104200 chr6B 437481274 437482063 789 True 977.000000 977 89.141000 3 786 1 chr6B.!!$R5 783
2 TraesCS6B01G104200 chr6B 547004831 547005609 778 True 922.000000 922 88.220000 16 786 1 chr6B.!!$R7 770
3 TraesCS6B01G104200 chr6B 84566058 84567099 1041 False 737.000000 737 79.905000 1100 2127 1 chr6B.!!$F3 1027
4 TraesCS6B01G104200 chr6B 64195228 64196307 1079 True 486.000000 486 75.774000 1070 2159 1 chr6B.!!$R3 1089
5 TraesCS6B01G104200 chr6B 84356878 84358558 1680 False 477.000000 811 84.491500 991 2803 2 chr6B.!!$F4 1812
6 TraesCS6B01G104200 chr6B 77613805 77614841 1036 False 405.000000 405 74.552000 1098 2118 1 chr6B.!!$F1 1020
7 TraesCS6B01G104200 chrUn 26726435 26729161 2726 False 1182.666667 1975 90.951667 807 3665 3 chrUn.!!$F4 2858
8 TraesCS6B01G104200 chrUn 26570007 26573942 3935 True 921.500000 2021 89.642250 797 3731 4 chrUn.!!$R5 2934
9 TraesCS6B01G104200 chrUn 153493732 153494817 1085 True 619.000000 619 77.960000 1102 2138 1 chrUn.!!$R4 1036
10 TraesCS6B01G104200 chrUn 331176330 331177183 853 False 580.000000 580 79.306000 1279 2127 1 chrUn.!!$F3 848
11 TraesCS6B01G104200 chrUn 102826593 102827634 1041 True 573.000000 573 77.407000 1095 2136 1 chrUn.!!$R3 1041
12 TraesCS6B01G104200 chrUn 98356603 98357302 699 True 477.000000 477 79.379000 1447 2138 1 chrUn.!!$R1 691
13 TraesCS6B01G104200 chrUn 153434863 153436548 1685 True 462.000000 774 84.533000 987 2803 2 chrUn.!!$R6 1816
14 TraesCS6B01G104200 chrUn 143908175 143911370 3195 False 348.333333 680 82.477667 984 3266 3 chrUn.!!$F5 2282
15 TraesCS6B01G104200 chr5B 427174673 427175454 781 False 1120.000000 1120 92.484000 2 786 1 chr5B.!!$F1 784
16 TraesCS6B01G104200 chr4B 585190869 585191652 783 True 1112.000000 1112 92.249000 1 786 1 chr4B.!!$R1 785
17 TraesCS6B01G104200 chr4B 660663203 660663996 793 False 944.000000 944 88.317000 1 786 1 chr4B.!!$F1 785
18 TraesCS6B01G104200 chr1B 146771144 146771929 785 False 987.000000 987 89.467000 1 780 1 chr1B.!!$F1 779
19 TraesCS6B01G104200 chr1D 284247256 284248027 771 True 953.000000 953 89.103000 29 799 1 chr1D.!!$R1 770
20 TraesCS6B01G104200 chr3B 23784689 23785483 794 False 944.000000 944 88.331000 1 786 1 chr3B.!!$F1 785
21 TraesCS6B01G104200 chr4A 659018502 659019279 777 False 937.000000 937 88.590000 16 786 1 chr4A.!!$F1 770
22 TraesCS6B01G104200 chr7B 484902326 484903113 787 True 928.000000 928 87.975000 2 788 1 chr7B.!!$R1 786
23 TraesCS6B01G104200 chr7B 690596115 690596906 791 True 909.000000 909 87.531000 1 786 1 chr7B.!!$R3 785
24 TraesCS6B01G104200 chr7B 690565421 690566211 790 True 880.000000 880 86.902000 1 786 1 chr7B.!!$R2 785
25 TraesCS6B01G104200 chr6D 91849737 91850410 673 False 782.000000 782 87.852000 1 664 1 chr6D.!!$F1 663
26 TraesCS6B01G104200 chr6A 47701911 47702787 876 False 597.000000 597 79.116000 1065 1967 1 chr6A.!!$F1 902
27 TraesCS6B01G104200 chr6A 48036367 48038246 1879 False 562.000000 769 79.067500 803 2808 2 chr6A.!!$F5 2005
28 TraesCS6B01G104200 chr6A 53397932 53398998 1066 True 494.000000 494 75.580000 1094 2138 1 chr6A.!!$R2 1044
29 TraesCS6B01G104200 chr6A 34928903 34929762 859 True 411.000000 411 76.180000 1276 2132 1 chr6A.!!$R1 856
30 TraesCS6B01G104200 chr6A 48087842 48088365 523 False 411.000000 411 80.871000 1613 2138 1 chr6A.!!$F4 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 472 0.602638 CAACAACACGCAGCTCCCTA 60.603 55.000 0.0 0.0 0.0 3.53 F
1016 1081 1.623834 GGACATGGAGAAGGAGGAGGT 60.624 57.143 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1299 1415 0.468226 GGTGCCGGGAGATTATGTCA 59.532 55.000 2.18 0.0 0.0 3.58 R
2960 4804 1.366435 ACAGGATAAGACCAGGGGAGT 59.634 52.381 0.00 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 1.791103 CGCCCAACCATGTTGTCGTT 61.791 55.000 6.25 0.00 0.00 3.85
87 89 0.677731 ACCGCAACTAGCACATGCAT 60.678 50.000 6.64 0.00 46.13 3.96
95 97 4.336889 ACTAGCACATGCATTATACCGT 57.663 40.909 6.64 0.00 45.16 4.83
328 351 7.327975 ACGTTGAGATCATTTGTAACTCCATA 58.672 34.615 0.00 0.00 0.00 2.74
396 419 1.218047 CCATCGAGGACGCTTGGAA 59.782 57.895 0.00 0.00 41.52 3.53
437 462 1.032657 TTGACCACCCCAACAACACG 61.033 55.000 0.00 0.00 0.00 4.49
447 472 0.602638 CAACAACACGCAGCTCCCTA 60.603 55.000 0.00 0.00 0.00 3.53
503 529 3.370953 CGGGATGACAAGAGGAGGAAATT 60.371 47.826 0.00 0.00 0.00 1.82
636 662 7.013178 TGAGCACAATGTTGAGAATTAGTTCAA 59.987 33.333 0.44 0.00 36.79 2.69
788 818 8.803799 GTTGTGGTTTTGTGTAATTAACTCAAG 58.196 33.333 0.00 0.00 41.28 3.02
790 820 7.339721 TGTGGTTTTGTGTAATTAACTCAAGGA 59.660 33.333 0.00 0.00 41.28 3.36
891 930 3.395702 CCATCCCGGTTCCGACCA 61.396 66.667 13.08 0.00 46.91 4.02
937 977 4.154347 GAGCGAGGCAGGGAGTGG 62.154 72.222 0.00 0.00 0.00 4.00
1016 1081 1.623834 GGACATGGAGAAGGAGGAGGT 60.624 57.143 0.00 0.00 0.00 3.85
1399 1543 0.693049 GGAAAGCTGGTTCCTCTCCA 59.307 55.000 9.57 0.00 43.32 3.86
1635 1871 2.928334 CATGCCTTGGAGAGCTTATGT 58.072 47.619 0.00 0.00 0.00 2.29
1713 1955 1.816074 TTGGCTTCCGTGATAACCAC 58.184 50.000 0.00 0.00 42.30 4.16
1773 2015 4.449131 GCCTTGTGAGGTTACTATTACCC 58.551 47.826 0.00 0.00 45.44 3.69
2034 2318 5.380043 AGTTTTGGCTCTCAAATCTTCTGA 58.620 37.500 0.00 0.00 43.95 3.27
2036 2320 6.322201 AGTTTTGGCTCTCAAATCTTCTGAAA 59.678 34.615 0.00 0.00 43.95 2.69
2138 2422 8.109705 TCTTTGCTTGCTTTAAATGTCTGATA 57.890 30.769 0.00 0.00 0.00 2.15
2139 2423 8.239314 TCTTTGCTTGCTTTAAATGTCTGATAG 58.761 33.333 0.00 0.00 0.00 2.08
2140 2424 7.452880 TTGCTTGCTTTAAATGTCTGATAGT 57.547 32.000 0.00 0.00 0.00 2.12
2141 2425 8.560355 TTGCTTGCTTTAAATGTCTGATAGTA 57.440 30.769 0.00 0.00 0.00 1.82
2177 2462 9.756571 TCTTATATAGTCTACTTCCTCCATTCC 57.243 37.037 0.00 0.00 0.00 3.01
2178 2463 9.762381 CTTATATAGTCTACTTCCTCCATTCCT 57.238 37.037 0.00 0.00 0.00 3.36
2190 2475 9.453830 ACTTCCTCCATTCCTAAATATAAGTCT 57.546 33.333 0.00 0.00 0.00 3.24
2221 2506 8.402472 AGAGATTTCAAGAAGAGACTACATACG 58.598 37.037 0.00 0.00 0.00 3.06
2222 2507 8.282455 AGATTTCAAGAAGAGACTACATACGA 57.718 34.615 0.00 0.00 0.00 3.43
2223 2508 8.740906 AGATTTCAAGAAGAGACTACATACGAA 58.259 33.333 0.00 0.00 0.00 3.85
2224 2509 8.918961 ATTTCAAGAAGAGACTACATACGAAG 57.081 34.615 0.00 0.00 0.00 3.79
2225 2510 5.881447 TCAAGAAGAGACTACATACGAAGC 58.119 41.667 0.00 0.00 0.00 3.86
2226 2511 5.414765 TCAAGAAGAGACTACATACGAAGCA 59.585 40.000 0.00 0.00 0.00 3.91
2227 2512 5.899120 AGAAGAGACTACATACGAAGCAA 57.101 39.130 0.00 0.00 0.00 3.91
2228 2513 6.268825 AGAAGAGACTACATACGAAGCAAA 57.731 37.500 0.00 0.00 0.00 3.68
2229 2514 6.688578 AGAAGAGACTACATACGAAGCAAAA 58.311 36.000 0.00 0.00 0.00 2.44
2230 2515 7.324178 AGAAGAGACTACATACGAAGCAAAAT 58.676 34.615 0.00 0.00 0.00 1.82
2231 2516 6.893958 AGAGACTACATACGAAGCAAAATG 57.106 37.500 0.00 0.00 0.00 2.32
2232 2517 6.631016 AGAGACTACATACGAAGCAAAATGA 58.369 36.000 0.00 0.00 0.00 2.57
2233 2518 6.754209 AGAGACTACATACGAAGCAAAATGAG 59.246 38.462 0.00 0.00 0.00 2.90
2234 2519 6.398918 AGACTACATACGAAGCAAAATGAGT 58.601 36.000 0.00 0.00 0.00 3.41
2235 2520 6.311445 AGACTACATACGAAGCAAAATGAGTG 59.689 38.462 0.00 0.00 0.00 3.51
2236 2521 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
2237 2522 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
2238 2523 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
2239 2524 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
2240 2525 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
2241 2526 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
2242 2527 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
2243 2528 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
2244 2529 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
2258 2543 9.469097 AGTGAATCTACACTCTAAAGTATGTCT 57.531 33.333 0.00 0.00 46.36 3.41
2287 2572 6.880484 ACATCCGTATGTAGTTTGTATTGGA 58.120 36.000 0.00 0.00 44.66 3.53
2288 2573 7.332557 ACATCCGTATGTAGTTTGTATTGGAA 58.667 34.615 0.00 0.00 44.66 3.53
2289 2574 7.990886 ACATCCGTATGTAGTTTGTATTGGAAT 59.009 33.333 0.00 0.00 44.66 3.01
2290 2575 8.495949 CATCCGTATGTAGTTTGTATTGGAATC 58.504 37.037 0.00 0.00 0.00 2.52
2291 2576 7.788026 TCCGTATGTAGTTTGTATTGGAATCT 58.212 34.615 0.00 0.00 0.00 2.40
2292 2577 7.924412 TCCGTATGTAGTTTGTATTGGAATCTC 59.076 37.037 0.00 0.00 0.00 2.75
2293 2578 7.926555 CCGTATGTAGTTTGTATTGGAATCTCT 59.073 37.037 0.00 0.00 0.00 3.10
2294 2579 9.961265 CGTATGTAGTTTGTATTGGAATCTCTA 57.039 33.333 0.00 0.00 0.00 2.43
2301 2586 9.660180 AGTTTGTATTGGAATCTCTAGAAAGAC 57.340 33.333 0.00 0.00 0.00 3.01
2302 2587 9.660180 GTTTGTATTGGAATCTCTAGAAAGACT 57.340 33.333 0.00 0.00 0.00 3.24
2320 2605 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
2322 2607 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2323 2608 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2422 2708 1.195115 GAGCCTCAGTATGACCCACA 58.805 55.000 0.00 0.00 42.56 4.17
2582 2868 3.319137 GGTGACTACAGCAGTGAATCA 57.681 47.619 0.00 0.00 43.08 2.57
2635 2921 3.951775 AAACAGAGCTTCTCGAGATGT 57.048 42.857 24.37 18.48 35.36 3.06
2709 3040 5.443283 AGCATATCCATGATTTGTCAGTGT 58.557 37.500 0.00 0.00 33.67 3.55
2817 4610 7.318141 CCTGAAGATTGTCATTTGCATAAGTT 58.682 34.615 0.00 0.00 0.00 2.66
2829 4622 9.341078 TCATTTGCATAAGTTTGCTCTATATCA 57.659 29.630 10.14 0.00 43.18 2.15
2833 4626 9.955208 TTGCATAAGTTTGCTCTATATCATTTG 57.045 29.630 10.14 0.00 43.18 2.32
2856 4665 2.184385 AAGTACCGTATGAAGTCGCG 57.816 50.000 0.00 0.00 0.00 5.87
2960 4804 1.899142 GGTAAGCCCATCTGCCAAAAA 59.101 47.619 0.00 0.00 0.00 1.94
2965 4811 0.897621 CCCATCTGCCAAAAACTCCC 59.102 55.000 0.00 0.00 0.00 4.30
2966 4812 0.897621 CCATCTGCCAAAAACTCCCC 59.102 55.000 0.00 0.00 0.00 4.81
3000 4847 2.991190 GTGCAATCATGGCTTTGTTCTG 59.009 45.455 0.00 0.00 0.00 3.02
3026 4873 1.952367 GCTGGGCTAGAAACACATGCT 60.952 52.381 0.43 0.00 0.00 3.79
3056 4905 9.173939 GTTGATACTCAATTGTCTTTTCAGTTG 57.826 33.333 5.13 0.00 38.79 3.16
3057 4906 7.362662 TGATACTCAATTGTCTTTTCAGTTGC 58.637 34.615 5.13 0.00 35.83 4.17
3058 4907 4.936891 ACTCAATTGTCTTTTCAGTTGCC 58.063 39.130 5.13 0.00 35.83 4.52
3110 4962 4.787735 GGTCACCTCTGGCCTAGA 57.212 61.111 3.32 4.40 39.36 2.43
3221 5073 1.751437 GGTTGCCTACTGGTTGATCC 58.249 55.000 0.00 0.00 35.27 3.36
3299 5152 6.636666 CAAGTAATTTGCCTAACAGCATTG 57.363 37.500 0.00 0.00 43.64 2.82
3300 5153 6.389091 CAAGTAATTTGCCTAACAGCATTGA 58.611 36.000 0.00 0.00 43.64 2.57
3301 5154 6.588719 AGTAATTTGCCTAACAGCATTGAA 57.411 33.333 0.00 0.00 43.64 2.69
3302 5155 7.174107 AGTAATTTGCCTAACAGCATTGAAT 57.826 32.000 0.00 0.00 43.64 2.57
3303 5156 7.614494 AGTAATTTGCCTAACAGCATTGAATT 58.386 30.769 0.00 0.00 43.64 2.17
3304 5157 6.730960 AATTTGCCTAACAGCATTGAATTG 57.269 33.333 0.00 0.00 43.64 2.32
3305 5158 3.872511 TGCCTAACAGCATTGAATTGG 57.127 42.857 0.00 0.00 38.00 3.16
3306 5159 2.496871 TGCCTAACAGCATTGAATTGGG 59.503 45.455 0.00 0.00 38.00 4.12
3307 5160 2.159057 GCCTAACAGCATTGAATTGGGG 60.159 50.000 0.00 0.00 0.00 4.96
3308 5161 2.159057 CCTAACAGCATTGAATTGGGGC 60.159 50.000 0.00 0.00 0.00 5.80
3309 5162 1.648116 AACAGCATTGAATTGGGGCT 58.352 45.000 0.00 0.00 34.64 5.19
3310 5163 2.530460 ACAGCATTGAATTGGGGCTA 57.470 45.000 0.00 0.00 32.71 3.93
3311 5164 2.818921 ACAGCATTGAATTGGGGCTAA 58.181 42.857 0.00 0.00 32.71 3.09
3312 5165 3.172339 ACAGCATTGAATTGGGGCTAAA 58.828 40.909 0.00 0.00 32.71 1.85
3313 5166 3.196254 ACAGCATTGAATTGGGGCTAAAG 59.804 43.478 0.00 0.00 32.71 1.85
3314 5167 2.767960 AGCATTGAATTGGGGCTAAAGG 59.232 45.455 0.00 0.00 32.09 3.11
3315 5168 2.742856 GCATTGAATTGGGGCTAAAGGC 60.743 50.000 0.00 0.00 40.90 4.35
3389 5258 9.290988 TGCTTCTTAACCTGTTATCAACATTAA 57.709 29.630 0.00 0.00 41.26 1.40
3473 5343 4.697352 GCTGGATCTTTGTCACTGTGTATT 59.303 41.667 7.79 0.00 0.00 1.89
3514 6559 6.155221 TGTTGTACATAAGAGAGGCTTGAGAT 59.845 38.462 0.00 0.00 37.42 2.75
3516 6561 6.132658 TGTACATAAGAGAGGCTTGAGATCT 58.867 40.000 0.00 0.00 37.42 2.75
3527 6573 4.705507 AGGCTTGAGATCTTGAACGTACTA 59.294 41.667 0.00 0.00 0.00 1.82
3558 6606 5.621197 TTCGATGGAATTGACGACATTTT 57.379 34.783 0.00 0.00 36.18 1.82
3559 6607 6.729391 TTCGATGGAATTGACGACATTTTA 57.271 33.333 0.00 0.00 36.18 1.52
3583 6642 5.483937 AGCATATATCTTTCCCACGGACATA 59.516 40.000 0.00 0.00 0.00 2.29
3587 6646 9.231297 CATATATCTTTCCCACGGACATAAAAT 57.769 33.333 0.00 0.00 0.00 1.82
3639 6698 4.127907 GGGCTCTGGTAAATTAGTAGCAC 58.872 47.826 0.00 0.00 0.00 4.40
3642 6701 4.441079 GCTCTGGTAAATTAGTAGCACGGA 60.441 45.833 0.00 0.00 0.00 4.69
3648 6707 7.784037 TGGTAAATTAGTAGCACGGAGAAATA 58.216 34.615 0.00 0.00 0.00 1.40
3658 6717 3.626930 CACGGAGAAATATTTTGGGGGA 58.373 45.455 1.43 0.00 0.00 4.81
3659 6718 3.380320 CACGGAGAAATATTTTGGGGGAC 59.620 47.826 1.43 0.00 0.00 4.46
3660 6719 3.010808 ACGGAGAAATATTTTGGGGGACA 59.989 43.478 1.43 0.00 0.00 4.02
3661 6720 3.632145 CGGAGAAATATTTTGGGGGACAG 59.368 47.826 1.43 0.00 0.00 3.51
3662 6721 3.384789 GGAGAAATATTTTGGGGGACAGC 59.615 47.826 1.43 0.00 0.00 4.40
3663 6722 4.023291 GAGAAATATTTTGGGGGACAGCA 58.977 43.478 1.43 0.00 0.00 4.41
3665 6724 4.467438 AGAAATATTTTGGGGGACAGCAAG 59.533 41.667 1.43 0.00 0.00 4.01
3666 6725 2.230130 TATTTTGGGGGACAGCAAGG 57.770 50.000 0.00 0.00 0.00 3.61
3667 6726 0.190815 ATTTTGGGGGACAGCAAGGT 59.809 50.000 0.00 0.00 0.00 3.50
3668 6727 0.031616 TTTTGGGGGACAGCAAGGTT 60.032 50.000 0.00 0.00 0.00 3.50
3669 6728 0.469144 TTTGGGGGACAGCAAGGTTC 60.469 55.000 0.00 0.00 0.00 3.62
3670 6729 1.360393 TTGGGGGACAGCAAGGTTCT 61.360 55.000 0.00 0.00 0.00 3.01
3683 6742 2.028484 GTTCTGACGCCACGGTCA 59.972 61.111 0.00 0.00 44.25 4.02
3685 6744 2.787567 TTCTGACGCCACGGTCACA 61.788 57.895 0.00 0.00 41.76 3.58
3692 6751 2.660802 CCACGGTCACACCTACCC 59.339 66.667 0.00 0.00 35.66 3.69
3720 6779 0.818296 CGTGGCAGGCTAAGTCTAGT 59.182 55.000 0.00 0.00 0.00 2.57
3731 6790 3.732471 GCTAAGTCTAGTTGGCTGTCTCG 60.732 52.174 0.00 0.00 31.54 4.04
3732 6791 2.201921 AGTCTAGTTGGCTGTCTCGA 57.798 50.000 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 12 5.453339 CCAGACAAAGAAGGTGAAGACAGTA 60.453 44.000 0.00 0.00 0.00 2.74
61 63 0.179043 TGCTAGTTGCGGTTGTCCAA 60.179 50.000 0.00 0.00 46.63 3.53
87 89 5.074584 TGTCTATGCACAACACGGTATAA 57.925 39.130 0.00 0.00 0.00 0.98
95 97 2.426522 GAGCCTTGTCTATGCACAACA 58.573 47.619 0.00 0.00 32.70 3.33
226 244 0.240678 GATTGTGCACAATGTGGCGA 59.759 50.000 41.64 17.34 45.72 5.54
294 316 6.367695 ACAAATGATCTCAACGTCGTAATCAA 59.632 34.615 0.00 0.00 0.00 2.57
328 351 1.667830 CATGTCACCGTCGTTGGCT 60.668 57.895 0.00 0.00 0.00 4.75
356 379 0.669625 AGGTTCCTAGCGTCGCAAAC 60.670 55.000 21.09 16.22 0.00 2.93
365 388 1.067821 CTCGATGGTGAGGTTCCTAGC 59.932 57.143 0.00 0.00 32.18 3.42
437 462 1.156645 CGCATTGAGTAGGGAGCTGC 61.157 60.000 0.00 0.00 0.00 5.25
447 472 1.079819 CTCCACCGACGCATTGAGT 60.080 57.895 0.00 0.00 0.00 3.41
488 514 3.308473 GGCCTACAATTTCCTCCTCTTGT 60.308 47.826 0.00 0.00 36.00 3.16
503 529 1.694150 GCATCTCCTATGTGGCCTACA 59.306 52.381 3.32 7.45 44.87 2.74
608 634 7.458409 ACTAATTCTCAACATTGTGCTCAAT 57.542 32.000 8.17 8.17 44.02 2.57
612 638 6.882610 TGAACTAATTCTCAACATTGTGCT 57.117 33.333 0.00 0.00 35.69 4.40
723 753 6.827586 AACACTTTACCACAACTTTTGAGA 57.172 33.333 0.00 0.00 0.00 3.27
859 896 1.657751 GATGGAGGGCTCGTTTTGGC 61.658 60.000 0.00 0.00 0.00 4.52
860 897 1.032114 GGATGGAGGGCTCGTTTTGG 61.032 60.000 0.00 0.00 0.00 3.28
864 901 3.470888 CGGGATGGAGGGCTCGTT 61.471 66.667 0.00 0.00 0.00 3.85
867 904 3.090532 AACCGGGATGGAGGGCTC 61.091 66.667 6.32 0.00 42.00 4.70
998 1063 1.623834 GGACCTCCTCCTTCTCCATGT 60.624 57.143 0.00 0.00 35.89 3.21
1250 1342 1.993391 GGGATGGGGTCGTCTGGAA 60.993 63.158 0.00 0.00 0.00 3.53
1299 1415 0.468226 GGTGCCGGGAGATTATGTCA 59.532 55.000 2.18 0.00 0.00 3.58
1635 1871 1.943968 GCAGCACGAACTTGGGACATA 60.944 52.381 0.00 0.00 39.30 2.29
1713 1955 1.071385 ACCAGCTCTGTTTCCTCACTG 59.929 52.381 0.00 0.00 0.00 3.66
2034 2318 7.436673 TGTTAAGAACTGCGTGCAATTTATTTT 59.563 29.630 0.00 0.00 0.00 1.82
2036 2320 6.442952 TGTTAAGAACTGCGTGCAATTTATT 58.557 32.000 0.00 0.00 0.00 1.40
2164 2449 9.453830 AGACTTATATTTAGGAATGGAGGAAGT 57.546 33.333 0.00 0.00 0.00 3.01
2195 2480 8.402472 CGTATGTAGTCTCTTCTTGAAATCTCT 58.598 37.037 0.00 0.00 0.00 3.10
2196 2481 8.399425 TCGTATGTAGTCTCTTCTTGAAATCTC 58.601 37.037 0.00 0.00 0.00 2.75
2197 2482 8.282455 TCGTATGTAGTCTCTTCTTGAAATCT 57.718 34.615 0.00 0.00 0.00 2.40
2198 2483 8.912787 TTCGTATGTAGTCTCTTCTTGAAATC 57.087 34.615 0.00 0.00 0.00 2.17
2199 2484 7.489757 GCTTCGTATGTAGTCTCTTCTTGAAAT 59.510 37.037 0.00 0.00 0.00 2.17
2200 2485 6.807230 GCTTCGTATGTAGTCTCTTCTTGAAA 59.193 38.462 0.00 0.00 0.00 2.69
2201 2486 6.072119 TGCTTCGTATGTAGTCTCTTCTTGAA 60.072 38.462 0.00 0.00 0.00 2.69
2202 2487 5.414765 TGCTTCGTATGTAGTCTCTTCTTGA 59.585 40.000 0.00 0.00 0.00 3.02
2203 2488 5.641709 TGCTTCGTATGTAGTCTCTTCTTG 58.358 41.667 0.00 0.00 0.00 3.02
2204 2489 5.899120 TGCTTCGTATGTAGTCTCTTCTT 57.101 39.130 0.00 0.00 0.00 2.52
2205 2490 5.899120 TTGCTTCGTATGTAGTCTCTTCT 57.101 39.130 0.00 0.00 0.00 2.85
2206 2491 6.946229 TTTTGCTTCGTATGTAGTCTCTTC 57.054 37.500 0.00 0.00 0.00 2.87
2207 2492 7.097192 TCATTTTGCTTCGTATGTAGTCTCTT 58.903 34.615 0.00 0.00 0.00 2.85
2208 2493 6.631016 TCATTTTGCTTCGTATGTAGTCTCT 58.369 36.000 0.00 0.00 0.00 3.10
2209 2494 6.531948 ACTCATTTTGCTTCGTATGTAGTCTC 59.468 38.462 0.00 0.00 0.00 3.36
2210 2495 6.311445 CACTCATTTTGCTTCGTATGTAGTCT 59.689 38.462 0.00 0.00 0.00 3.24
2211 2496 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
2212 2497 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
2213 2498 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
2214 2499 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
2215 2500 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
2216 2501 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
2217 2502 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
2218 2503 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
2219 2504 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
2220 2505 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
2221 2506 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
2260 2545 9.917129 CCAATACAAACTACATACGGATGTATA 57.083 33.333 20.64 10.32 45.42 1.47
2261 2546 8.644216 TCCAATACAAACTACATACGGATGTAT 58.356 33.333 20.64 8.38 45.42 2.29
2262 2547 8.009622 TCCAATACAAACTACATACGGATGTA 57.990 34.615 19.32 19.32 44.77 2.29
2264 2549 7.780008 TTCCAATACAAACTACATACGGATG 57.220 36.000 5.94 5.94 39.16 3.51
2265 2550 8.429641 AGATTCCAATACAAACTACATACGGAT 58.570 33.333 0.00 0.00 0.00 4.18
2266 2551 7.788026 AGATTCCAATACAAACTACATACGGA 58.212 34.615 0.00 0.00 0.00 4.69
2267 2552 7.926555 AGAGATTCCAATACAAACTACATACGG 59.073 37.037 0.00 0.00 0.00 4.02
2268 2553 8.873215 AGAGATTCCAATACAAACTACATACG 57.127 34.615 0.00 0.00 0.00 3.06
2275 2560 9.660180 GTCTTTCTAGAGATTCCAATACAAACT 57.340 33.333 0.00 0.00 0.00 2.66
2276 2561 9.660180 AGTCTTTCTAGAGATTCCAATACAAAC 57.340 33.333 0.00 0.00 0.00 2.93
2294 2579 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
2295 2580 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
2296 2581 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2297 2582 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2298 2583 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2299 2584 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2300 2585 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2301 2586 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2302 2587 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
2303 2588 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
2304 2589 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2305 2590 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2306 2591 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2307 2592 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2308 2593 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
2309 2594 3.686691 GCTAACTACTCCCTCCGTTCCTA 60.687 52.174 0.00 0.00 0.00 2.94
2310 2595 2.949508 GCTAACTACTCCCTCCGTTCCT 60.950 54.545 0.00 0.00 0.00 3.36
2311 2596 1.408340 GCTAACTACTCCCTCCGTTCC 59.592 57.143 0.00 0.00 0.00 3.62
2312 2597 2.097825 TGCTAACTACTCCCTCCGTTC 58.902 52.381 0.00 0.00 0.00 3.95
2313 2598 2.226962 TGCTAACTACTCCCTCCGTT 57.773 50.000 0.00 0.00 0.00 4.44
2314 2599 2.100989 CTTGCTAACTACTCCCTCCGT 58.899 52.381 0.00 0.00 0.00 4.69
2315 2600 2.359531 CTCTTGCTAACTACTCCCTCCG 59.640 54.545 0.00 0.00 0.00 4.63
2316 2601 2.101750 GCTCTTGCTAACTACTCCCTCC 59.898 54.545 0.00 0.00 36.03 4.30
2317 2602 3.446310 GCTCTTGCTAACTACTCCCTC 57.554 52.381 0.00 0.00 36.03 4.30
2422 2708 3.634504 TGTAGGCATTCAATTGGATGCT 58.365 40.909 38.13 28.74 39.74 3.79
2582 2868 1.898574 CCCGTGCTGAAAAGCCACT 60.899 57.895 0.00 0.00 0.00 4.00
2598 2884 2.295909 TGTTTTTCACATGTAGCAGCCC 59.704 45.455 0.00 0.00 0.00 5.19
2635 2921 7.815840 TGTGTACTCCTGAATTCAAATTGAA 57.184 32.000 11.10 11.10 41.09 2.69
2709 3040 2.283529 GCTGTCTGAAGGGGTCGGA 61.284 63.158 0.00 0.00 39.47 4.55
2817 4610 8.405531 GGTACTTTTGCAAATGATATAGAGCAA 58.594 33.333 26.53 0.00 39.86 3.91
2829 4622 6.569179 ACTTCATACGGTACTTTTGCAAAT 57.431 33.333 13.65 1.10 0.00 2.32
2830 4623 5.333492 CGACTTCATACGGTACTTTTGCAAA 60.333 40.000 8.05 8.05 0.00 3.68
2831 4624 4.150980 CGACTTCATACGGTACTTTTGCAA 59.849 41.667 0.00 0.00 0.00 4.08
2833 4626 3.483085 GCGACTTCATACGGTACTTTTGC 60.483 47.826 0.00 0.00 0.00 3.68
2856 4665 4.911514 TTTTTCCTCAGTGTTAACAGGC 57.088 40.909 8.98 0.00 0.00 4.85
2902 4746 6.216801 TCCAGATACAACTTACAGCGTTAT 57.783 37.500 0.00 0.00 0.00 1.89
2906 4750 3.448686 CCTCCAGATACAACTTACAGCG 58.551 50.000 0.00 0.00 0.00 5.18
2909 4753 3.369471 GCTGCCTCCAGATACAACTTACA 60.369 47.826 0.00 0.00 41.77 2.41
2960 4804 1.366435 ACAGGATAAGACCAGGGGAGT 59.634 52.381 0.00 0.00 0.00 3.85
2965 4811 2.787473 TTGCACAGGATAAGACCAGG 57.213 50.000 0.00 0.00 0.00 4.45
2966 4812 3.877559 TGATTGCACAGGATAAGACCAG 58.122 45.455 0.00 0.00 0.00 4.00
3110 4962 7.234577 CCTTCCTAGCTAGAAAATCATAGAGGT 59.765 40.741 22.70 0.00 0.00 3.85
3221 5073 7.416154 TTCAGTAAACTCAACCTGAATAACG 57.584 36.000 0.00 0.00 38.61 3.18
3295 5148 3.183793 GCCTTTAGCCCCAATTCAATG 57.816 47.619 0.00 0.00 34.35 2.82
3307 5160 0.905357 TCTCCTGTCAGGCCTTTAGC 59.095 55.000 14.64 0.00 42.60 3.09
3308 5161 2.183679 ACTCTCCTGTCAGGCCTTTAG 58.816 52.381 14.64 6.11 34.61 1.85
3309 5162 2.303022 CAACTCTCCTGTCAGGCCTTTA 59.697 50.000 14.64 0.00 34.61 1.85
3310 5163 1.072965 CAACTCTCCTGTCAGGCCTTT 59.927 52.381 14.64 1.83 34.61 3.11
3311 5164 0.689623 CAACTCTCCTGTCAGGCCTT 59.310 55.000 14.64 0.00 34.61 4.35
3312 5165 1.197430 CCAACTCTCCTGTCAGGCCT 61.197 60.000 14.64 0.00 34.61 5.19
3313 5166 1.298014 CCAACTCTCCTGTCAGGCC 59.702 63.158 14.64 0.00 34.61 5.19
3314 5167 1.376553 GCCAACTCTCCTGTCAGGC 60.377 63.158 14.64 0.00 34.61 4.85
3315 5168 0.689623 AAGCCAACTCTCCTGTCAGG 59.310 55.000 13.21 13.21 36.46 3.86
3316 5169 2.149578 CAAAGCCAACTCTCCTGTCAG 58.850 52.381 0.00 0.00 0.00 3.51
3317 5170 1.815408 GCAAAGCCAACTCTCCTGTCA 60.815 52.381 0.00 0.00 0.00 3.58
3318 5171 0.877743 GCAAAGCCAACTCTCCTGTC 59.122 55.000 0.00 0.00 0.00 3.51
3344 5213 8.615878 AGAAGCAGTATAGTACTACATCAGAG 57.384 38.462 4.31 0.00 37.23 3.35
3514 6559 2.751259 ACCGCTGATAGTACGTTCAAGA 59.249 45.455 0.00 0.00 0.00 3.02
3516 6561 3.581024 AACCGCTGATAGTACGTTCAA 57.419 42.857 0.00 0.00 0.00 2.69
3527 6573 2.332063 ATTCCATCGAAACCGCTGAT 57.668 45.000 0.00 0.00 0.00 2.90
3558 6606 4.836175 TGTCCGTGGGAAAGATATATGCTA 59.164 41.667 0.00 0.00 31.38 3.49
3559 6607 3.646162 TGTCCGTGGGAAAGATATATGCT 59.354 43.478 0.00 0.00 31.38 3.79
3639 6698 3.626930 TGTCCCCCAAAATATTTCTCCG 58.373 45.455 0.10 0.00 0.00 4.63
3642 6701 4.059773 TGCTGTCCCCCAAAATATTTCT 57.940 40.909 0.10 0.00 0.00 2.52
3648 6707 0.190815 ACCTTGCTGTCCCCCAAAAT 59.809 50.000 0.00 0.00 0.00 1.82
3658 6717 1.598130 GGCGTCAGAACCTTGCTGT 60.598 57.895 0.00 0.00 34.98 4.40
3659 6718 1.597854 TGGCGTCAGAACCTTGCTG 60.598 57.895 0.00 0.00 34.71 4.41
3660 6719 1.598130 GTGGCGTCAGAACCTTGCT 60.598 57.895 0.00 0.00 0.00 3.91
3661 6720 2.946762 GTGGCGTCAGAACCTTGC 59.053 61.111 0.00 0.00 0.00 4.01
3662 6721 2.317609 CCGTGGCGTCAGAACCTTG 61.318 63.158 0.00 0.00 0.00 3.61
3663 6722 2.030562 CCGTGGCGTCAGAACCTT 59.969 61.111 0.00 0.00 0.00 3.50
3665 6724 2.737376 GACCGTGGCGTCAGAACC 60.737 66.667 0.00 0.00 32.74 3.62
3666 6725 2.028484 TGACCGTGGCGTCAGAAC 59.972 61.111 0.00 0.00 37.85 3.01
3667 6726 2.028484 GTGACCGTGGCGTCAGAA 59.972 61.111 0.00 0.00 43.26 3.02
3668 6727 3.220658 TGTGACCGTGGCGTCAGA 61.221 61.111 0.00 0.00 43.26 3.27
3669 6728 3.036084 GTGTGACCGTGGCGTCAG 61.036 66.667 0.00 0.00 43.26 3.51
3670 6729 4.595538 GGTGTGACCGTGGCGTCA 62.596 66.667 0.00 0.00 40.44 4.35
3685 6744 1.829533 ACGACACACACGGGTAGGT 60.830 57.895 0.00 0.00 34.93 3.08
3692 6751 3.337889 CCTGCCACGACACACACG 61.338 66.667 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.