Multiple sequence alignment - TraesCS6B01G103700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G103700 chr6B 100.000 3260 0 0 1 3260 82155669 82158928 0.000000e+00 6021.0
1 TraesCS6B01G103700 chr6B 92.308 1339 87 7 838 2174 82004449 82005773 0.000000e+00 1888.0
2 TraesCS6B01G103700 chr6B 84.328 1391 156 36 810 2174 82165745 82167099 0.000000e+00 1304.0
3 TraesCS6B01G103700 chr6B 93.360 753 36 6 2500 3239 12913105 12913856 0.000000e+00 1101.0
4 TraesCS6B01G103700 chr6B 78.083 1200 211 33 994 2161 62125613 62126792 0.000000e+00 712.0
5 TraesCS6B01G103700 chr6B 81.235 826 81 36 1 808 115519364 115520133 1.670000e-167 599.0
6 TraesCS6B01G103700 chr6B 89.905 317 20 6 2173 2484 82005806 82006115 6.550000e-107 398.0
7 TraesCS6B01G103700 chr6B 75.776 838 149 28 1354 2167 82544263 82543456 1.100000e-99 374.0
8 TraesCS6B01G103700 chr6B 91.818 110 9 0 2173 2282 82167132 82167241 1.570000e-33 154.0
9 TraesCS6B01G103700 chr6A 93.517 1666 79 9 828 2490 47488325 47486686 0.000000e+00 2451.0
10 TraesCS6B01G103700 chr6A 85.688 1090 110 25 812 1897 47471966 47470919 0.000000e+00 1107.0
11 TraesCS6B01G103700 chr6A 83.852 867 126 6 1286 2146 47462103 47461245 0.000000e+00 813.0
12 TraesCS6B01G103700 chr6A 78.824 1190 204 32 1008 2167 33255152 33256323 0.000000e+00 758.0
13 TraesCS6B01G103700 chr6A 78.057 1194 218 30 996 2161 34029166 34030343 0.000000e+00 713.0
14 TraesCS6B01G103700 chr6A 93.885 278 17 0 1889 2166 47470129 47469852 1.400000e-113 420.0
15 TraesCS6B01G103700 chr6A 90.712 323 17 8 2173 2490 47469811 47469497 5.030000e-113 418.0
16 TraesCS6B01G103700 chr6A 77.396 407 74 14 1193 1584 33216376 33215973 3.270000e-55 226.0
17 TraesCS6B01G103700 chr6A 72.199 705 150 35 1484 2165 40529291 40528610 1.200000e-39 174.0
18 TraesCS6B01G103700 chr6A 93.636 110 7 0 2173 2282 47449449 47449340 7.240000e-37 165.0
19 TraesCS6B01G103700 chr6A 92.727 110 8 0 2173 2282 47461174 47461065 3.370000e-35 159.0
20 TraesCS6B01G103700 chr6A 79.111 225 33 10 604 815 53922043 53922266 3.390000e-30 143.0
21 TraesCS6B01G103700 chrUn 90.841 1332 76 20 838 2168 27072946 27074232 0.000000e+00 1742.0
22 TraesCS6B01G103700 chrUn 85.427 1393 152 31 805 2172 26971174 26969808 0.000000e+00 1400.0
23 TraesCS6B01G103700 chrUn 83.384 1312 150 33 848 2146 27082482 27083738 0.000000e+00 1153.0
24 TraesCS6B01G103700 chrUn 100.000 413 0 0 851 1263 477421603 477422015 0.000000e+00 763.0
25 TraesCS6B01G103700 chrUn 82.009 856 99 33 1 808 134399023 134398175 0.000000e+00 676.0
26 TraesCS6B01G103700 chrUn 91.772 316 14 7 2173 2484 27074271 27074578 2.320000e-116 429.0
27 TraesCS6B01G103700 chrUn 100.000 210 0 0 1 210 436241500 436241709 3.940000e-104 388.0
28 TraesCS6B01G103700 chrUn 91.818 110 9 0 2173 2282 26969773 26969664 1.570000e-33 154.0
29 TraesCS6B01G103700 chrUn 91.818 110 9 0 2173 2282 27083809 27083918 1.570000e-33 154.0
30 TraesCS6B01G103700 chrUn 76.140 285 66 2 1884 2167 104476744 104477027 7.290000e-32 148.0
31 TraesCS6B01G103700 chrUn 79.111 225 33 11 604 815 40178301 40178078 3.390000e-30 143.0
32 TraesCS6B01G103700 chrUn 100.000 28 0 0 2457 2484 26969650 26969623 6.000000e-03 52.8
33 TraesCS6B01G103700 chr3B 93.324 749 38 5 2500 3238 801804675 801803929 0.000000e+00 1096.0
34 TraesCS6B01G103700 chr3B 77.321 851 104 50 20 815 12628646 12629462 1.400000e-113 420.0
35 TraesCS6B01G103700 chr3B 80.082 487 67 25 9 478 457012203 457011730 5.210000e-88 335.0
36 TraesCS6B01G103700 chr3B 76.692 399 65 25 109 493 123366639 123366255 2.570000e-46 196.0
37 TraesCS6B01G103700 chr1D 91.899 753 40 8 2500 3239 393690863 393690119 0.000000e+00 1033.0
38 TraesCS6B01G103700 chr1D 91.755 752 46 8 2500 3238 393437180 393437928 0.000000e+00 1031.0
39 TraesCS6B01G103700 chr1D 92.778 360 25 1 2880 3239 393690914 393691272 1.340000e-143 520.0
40 TraesCS6B01G103700 chr1D 94.898 294 12 3 2597 2887 393689826 393690119 1.070000e-124 457.0
41 TraesCS6B01G103700 chr1D 95.833 96 3 1 2500 2595 393688098 393688192 1.570000e-33 154.0
42 TraesCS6B01G103700 chr1B 87.384 864 48 13 1 808 259222094 259221236 0.000000e+00 935.0
43 TraesCS6B01G103700 chr1B 82.100 838 98 27 1 803 544803204 544802384 0.000000e+00 669.0
44 TraesCS6B01G103700 chr1B 76.942 412 66 26 98 493 28546415 28546813 1.190000e-49 207.0
45 TraesCS6B01G103700 chr1B 77.179 390 64 20 115 493 28546374 28546749 1.530000e-48 204.0
46 TraesCS6B01G103700 chr1B 79.556 225 32 11 604 815 142527343 142527566 7.290000e-32 148.0
47 TraesCS6B01G103700 chr1B 79.556 225 32 10 604 815 321697763 321697540 7.290000e-32 148.0
48 TraesCS6B01G103700 chr7B 85.566 866 58 30 1 812 11653839 11652987 0.000000e+00 845.0
49 TraesCS6B01G103700 chr7B 93.960 149 7 1 2306 2452 453623290 453623438 1.180000e-54 224.0
50 TraesCS6B01G103700 chr6D 78.453 1202 215 29 994 2167 28658355 28657170 0.000000e+00 745.0
51 TraesCS6B01G103700 chr6D 82.670 854 93 30 1 805 46439253 46440100 0.000000e+00 706.0
52 TraesCS6B01G103700 chr3A 80.792 833 108 33 2 807 446318097 446318904 3.600000e-169 604.0
53 TraesCS6B01G103700 chr7A 79.952 838 112 36 18 815 660971293 660970472 1.700000e-157 566.0
54 TraesCS6B01G103700 chr7A 92.763 152 9 2 2306 2455 201987155 201987004 5.480000e-53 219.0
55 TraesCS6B01G103700 chr2A 83.167 600 55 22 1 593 768508793 768509353 1.040000e-139 507.0
56 TraesCS6B01G103700 chr2A 94.828 116 6 0 689 804 768509376 768509491 7.190000e-42 182.0
57 TraesCS6B01G103700 chr2A 91.379 58 5 0 746 803 685757167 685757224 2.700000e-11 80.5
58 TraesCS6B01G103700 chr3D 76.796 724 81 43 123 808 554922772 554923446 3.140000e-85 326.0
59 TraesCS6B01G103700 chr7D 93.960 149 7 1 2306 2452 436961795 436961943 1.180000e-54 224.0
60 TraesCS6B01G103700 chr5B 93.377 151 9 1 2306 2455 98663330 98663180 4.230000e-54 222.0
61 TraesCS6B01G103700 chr5B 80.000 225 31 12 604 815 108836136 108836359 1.570000e-33 154.0
62 TraesCS6B01G103700 chr5B 71.891 772 133 63 98 817 288317430 288316691 2.620000e-31 147.0
63 TraesCS6B01G103700 chr5A 93.377 151 9 1 2306 2455 86662171 86662021 4.230000e-54 222.0
64 TraesCS6B01G103700 chr2B 77.458 417 58 29 98 493 711136209 711135808 1.970000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G103700 chr6B 82155669 82158928 3259 False 6021.000000 6021 100.0000 1 3260 1 chr6B.!!$F3 3259
1 TraesCS6B01G103700 chr6B 82004449 82006115 1666 False 1143.000000 1888 91.1065 838 2484 2 chr6B.!!$F5 1646
2 TraesCS6B01G103700 chr6B 12913105 12913856 751 False 1101.000000 1101 93.3600 2500 3239 1 chr6B.!!$F1 739
3 TraesCS6B01G103700 chr6B 82165745 82167241 1496 False 729.000000 1304 88.0730 810 2282 2 chr6B.!!$F6 1472
4 TraesCS6B01G103700 chr6B 62125613 62126792 1179 False 712.000000 712 78.0830 994 2161 1 chr6B.!!$F2 1167
5 TraesCS6B01G103700 chr6B 115519364 115520133 769 False 599.000000 599 81.2350 1 808 1 chr6B.!!$F4 807
6 TraesCS6B01G103700 chr6B 82543456 82544263 807 True 374.000000 374 75.7760 1354 2167 1 chr6B.!!$R1 813
7 TraesCS6B01G103700 chr6A 47486686 47488325 1639 True 2451.000000 2451 93.5170 828 2490 1 chr6A.!!$R4 1662
8 TraesCS6B01G103700 chr6A 33255152 33256323 1171 False 758.000000 758 78.8240 1008 2167 1 chr6A.!!$F1 1159
9 TraesCS6B01G103700 chr6A 34029166 34030343 1177 False 713.000000 713 78.0570 996 2161 1 chr6A.!!$F2 1165
10 TraesCS6B01G103700 chr6A 47469497 47471966 2469 True 648.333333 1107 90.0950 812 2490 3 chr6A.!!$R6 1678
11 TraesCS6B01G103700 chr6A 47461065 47462103 1038 True 486.000000 813 88.2895 1286 2282 2 chr6A.!!$R5 996
12 TraesCS6B01G103700 chrUn 27072946 27074578 1632 False 1085.500000 1742 91.3065 838 2484 2 chrUn.!!$F4 1646
13 TraesCS6B01G103700 chrUn 134398175 134399023 848 True 676.000000 676 82.0090 1 808 1 chrUn.!!$R2 807
14 TraesCS6B01G103700 chrUn 27082482 27083918 1436 False 653.500000 1153 87.6010 848 2282 2 chrUn.!!$F5 1434
15 TraesCS6B01G103700 chrUn 26969623 26971174 1551 True 535.600000 1400 92.4150 805 2484 3 chrUn.!!$R3 1679
16 TraesCS6B01G103700 chr3B 801803929 801804675 746 True 1096.000000 1096 93.3240 2500 3238 1 chr3B.!!$R3 738
17 TraesCS6B01G103700 chr3B 12628646 12629462 816 False 420.000000 420 77.3210 20 815 1 chr3B.!!$F1 795
18 TraesCS6B01G103700 chr1D 393690119 393690863 744 True 1033.000000 1033 91.8990 2500 3239 1 chr1D.!!$R1 739
19 TraesCS6B01G103700 chr1D 393437180 393437928 748 False 1031.000000 1031 91.7550 2500 3238 1 chr1D.!!$F1 738
20 TraesCS6B01G103700 chr1D 393688098 393691272 3174 False 377.000000 520 94.5030 2500 3239 3 chr1D.!!$F2 739
21 TraesCS6B01G103700 chr1B 259221236 259222094 858 True 935.000000 935 87.3840 1 808 1 chr1B.!!$R1 807
22 TraesCS6B01G103700 chr1B 544802384 544803204 820 True 669.000000 669 82.1000 1 803 1 chr1B.!!$R3 802
23 TraesCS6B01G103700 chr7B 11652987 11653839 852 True 845.000000 845 85.5660 1 812 1 chr7B.!!$R1 811
24 TraesCS6B01G103700 chr6D 28657170 28658355 1185 True 745.000000 745 78.4530 994 2167 1 chr6D.!!$R1 1173
25 TraesCS6B01G103700 chr6D 46439253 46440100 847 False 706.000000 706 82.6700 1 805 1 chr6D.!!$F1 804
26 TraesCS6B01G103700 chr3A 446318097 446318904 807 False 604.000000 604 80.7920 2 807 1 chr3A.!!$F1 805
27 TraesCS6B01G103700 chr7A 660970472 660971293 821 True 566.000000 566 79.9520 18 815 1 chr7A.!!$R2 797
28 TraesCS6B01G103700 chr2A 768508793 768509491 698 False 344.500000 507 88.9975 1 804 2 chr2A.!!$F2 803
29 TraesCS6B01G103700 chr3D 554922772 554923446 674 False 326.000000 326 76.7960 123 808 1 chr3D.!!$F1 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
659 872 0.250597 GCGGGGTGGTTGTACTTTCT 60.251 55.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2493 3662 0.463654 GCCATGGCGAGATGTACCAA 60.464 55.0 23.48 0.0 36.94 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 6.047511 ACATGCATAAAAATGTTGCCCTAA 57.952 33.333 0.00 0.00 33.19 2.69
659 872 0.250597 GCGGGGTGGTTGTACTTTCT 60.251 55.000 0.00 0.00 0.00 2.52
808 1039 1.082756 GCGCCAAATAGGATTCGCG 60.083 57.895 0.00 0.00 41.22 5.87
820 1051 1.855360 GGATTCGCGTGTTGAGAGATC 59.145 52.381 5.77 0.00 0.00 2.75
842 1073 7.617723 AGATCCTAGAATCACAGTAGTTTCAGT 59.382 37.037 0.00 0.00 0.00 3.41
904 1136 1.295423 CCCACGACACCTAACCCTG 59.705 63.158 0.00 0.00 0.00 4.45
950 1199 4.327627 TCGATATCTTCATCGTCGCTCTAG 59.672 45.833 0.34 0.00 46.21 2.43
960 1209 3.522731 CGCTCTAGGGTCTGCGCT 61.523 66.667 9.73 0.00 41.85 5.92
961 1210 2.105930 GCTCTAGGGTCTGCGCTG 59.894 66.667 9.73 8.88 38.42 5.18
962 1211 2.716017 GCTCTAGGGTCTGCGCTGT 61.716 63.158 9.73 0.00 38.42 4.40
963 1212 1.384989 GCTCTAGGGTCTGCGCTGTA 61.385 60.000 9.73 0.00 38.42 2.74
1092 1359 2.563702 GACGACCTACTCTCCGAGATT 58.436 52.381 0.00 0.00 33.32 2.40
1095 1362 3.207778 CGACCTACTCTCCGAGATTCTT 58.792 50.000 0.00 0.00 33.32 2.52
1647 1924 1.066143 ACACTCTTTCCATACCAGGCG 60.066 52.381 0.00 0.00 0.00 5.52
1672 1949 4.631377 TCGAGGCAGATGTATTCAGTTTTG 59.369 41.667 0.00 0.00 0.00 2.44
1704 1981 1.741145 TCTACGAATGTCGCTGTGCTA 59.259 47.619 0.00 0.00 45.12 3.49
1777 2054 3.120060 CGAGTTTGATTTGGAGAAGCAGG 60.120 47.826 0.00 0.00 0.00 4.85
1877 2175 2.231478 TCGGGATGTCAGACTCAAACTC 59.769 50.000 1.31 0.00 0.00 3.01
1878 2176 2.611518 GGGATGTCAGACTCAAACTCG 58.388 52.381 1.31 0.00 0.00 4.18
1940 3033 1.188863 GCTTCATGGGTGCTTGGAAT 58.811 50.000 0.00 0.00 0.00 3.01
2121 3235 8.506168 TCCAAACCATGATAATTTCTCAGTAC 57.494 34.615 0.00 0.00 0.00 2.73
2235 3396 6.695292 ACAATTTTAAGTAGTGTCGTACCG 57.305 37.500 0.00 0.00 0.00 4.02
2291 3452 5.104982 TGTCATGTACTTATGTCCTGATGCA 60.105 40.000 0.00 0.00 0.00 3.96
2292 3453 5.464722 GTCATGTACTTATGTCCTGATGCAG 59.535 44.000 0.00 0.00 0.00 4.41
2293 3454 5.129320 TCATGTACTTATGTCCTGATGCAGT 59.871 40.000 0.00 0.00 0.00 4.40
2294 3455 4.758688 TGTACTTATGTCCTGATGCAGTG 58.241 43.478 0.00 0.00 0.00 3.66
2295 3456 4.466015 TGTACTTATGTCCTGATGCAGTGA 59.534 41.667 0.00 0.00 0.00 3.41
2296 3457 4.767578 ACTTATGTCCTGATGCAGTGAT 57.232 40.909 0.00 0.00 0.00 3.06
2297 3458 4.449131 ACTTATGTCCTGATGCAGTGATG 58.551 43.478 0.00 0.00 0.00 3.07
2298 3459 1.676746 ATGTCCTGATGCAGTGATGC 58.323 50.000 0.00 0.00 0.00 3.91
2358 3523 9.878599 GTTTTGGATATTTCAATATGGACTACG 57.121 33.333 0.00 0.00 31.96 3.51
2496 3665 7.636150 ATGATCTAGAAACAATCTGGTTTGG 57.364 36.000 0.00 0.00 40.85 3.28
2497 3666 6.542821 TGATCTAGAAACAATCTGGTTTGGT 58.457 36.000 0.00 0.00 40.85 3.67
2498 3667 7.685481 TGATCTAGAAACAATCTGGTTTGGTA 58.315 34.615 0.00 0.00 40.85 3.25
2649 5456 4.551671 CCTAGAATCTCCCTTTCCTCTCA 58.448 47.826 0.00 0.00 0.00 3.27
2656 5463 3.013417 TCTCCCTTTCCTCTCAATCCTCT 59.987 47.826 0.00 0.00 0.00 3.69
2710 5520 2.819595 GCGATGGCGGCTTCTTCA 60.820 61.111 20.27 0.00 38.16 3.02
2807 5617 3.114606 TCTCCAAGATTGAGGCATGGTA 58.885 45.455 0.00 0.00 32.90 3.25
2812 5622 1.414181 AGATTGAGGCATGGTACTCGG 59.586 52.381 0.00 0.00 36.53 4.63
2923 6535 6.503524 GGCCGCTTGAATTGAATCTTAATTA 58.496 36.000 0.00 0.00 0.00 1.40
3051 6663 0.752743 GTGCTGCTGGGATTATGCCA 60.753 55.000 5.13 5.13 34.62 4.92
3096 6708 2.107950 TTCGGCCGAAATTCATCTGT 57.892 45.000 37.13 0.00 0.00 3.41
3187 6800 3.651803 TTTGAAATGGCCGAAATTCGT 57.348 38.095 14.58 0.00 38.40 3.85
3239 6852 6.090088 CACAAAACGAAAATCAAAACACAGGA 59.910 34.615 0.00 0.00 0.00 3.86
3240 6853 6.647067 ACAAAACGAAAATCAAAACACAGGAA 59.353 30.769 0.00 0.00 0.00 3.36
3241 6854 7.171678 ACAAAACGAAAATCAAAACACAGGAAA 59.828 29.630 0.00 0.00 0.00 3.13
3242 6855 7.841915 AAACGAAAATCAAAACACAGGAAAT 57.158 28.000 0.00 0.00 0.00 2.17
3243 6856 8.934507 AAACGAAAATCAAAACACAGGAAATA 57.065 26.923 0.00 0.00 0.00 1.40
3244 6857 8.934507 AACGAAAATCAAAACACAGGAAATAA 57.065 26.923 0.00 0.00 0.00 1.40
3245 6858 9.541143 AACGAAAATCAAAACACAGGAAATAAT 57.459 25.926 0.00 0.00 0.00 1.28
3246 6859 9.191995 ACGAAAATCAAAACACAGGAAATAATC 57.808 29.630 0.00 0.00 0.00 1.75
3247 6860 9.410556 CGAAAATCAAAACACAGGAAATAATCT 57.589 29.630 0.00 0.00 0.00 2.40
3256 6869 9.975218 AAACACAGGAAATAATCTATTAGTGGT 57.025 29.630 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
659 872 2.234414 ACTCGAACCCGCATTAAGGTTA 59.766 45.455 0.00 0.00 46.38 2.85
706 937 3.371898 GCCCGTTACGCTGTACTTTATTT 59.628 43.478 0.00 0.00 0.00 1.40
808 1039 6.127479 ACTGTGATTCTAGGATCTCTCAACAC 60.127 42.308 12.38 1.65 0.00 3.32
820 1051 8.687242 TGATACTGAAACTACTGTGATTCTAGG 58.313 37.037 0.00 0.00 0.00 3.02
842 1073 6.603997 ACGGTGGGTGCTAAATAAAAATGATA 59.396 34.615 0.00 0.00 0.00 2.15
950 1199 0.531200 AAGTACTACAGCGCAGACCC 59.469 55.000 11.47 0.00 0.00 4.46
958 1207 4.924462 GGAGTGAAAGTGAAGTACTACAGC 59.076 45.833 0.00 0.00 39.18 4.40
960 1209 5.509163 GCTGGAGTGAAAGTGAAGTACTACA 60.509 44.000 0.00 0.00 39.18 2.74
961 1210 4.924462 GCTGGAGTGAAAGTGAAGTACTAC 59.076 45.833 0.00 0.00 39.18 2.73
962 1211 4.021368 GGCTGGAGTGAAAGTGAAGTACTA 60.021 45.833 0.00 0.00 39.18 1.82
963 1212 3.244249 GGCTGGAGTGAAAGTGAAGTACT 60.244 47.826 0.00 0.00 42.89 2.73
1092 1359 3.327404 GGGGGAAGGCGGACAAGA 61.327 66.667 0.00 0.00 0.00 3.02
1647 1924 2.101582 ACTGAATACATCTGCCTCGACC 59.898 50.000 0.00 0.00 0.00 4.79
1656 1933 3.763897 GGGTGGCAAAACTGAATACATCT 59.236 43.478 0.00 0.00 0.00 2.90
1672 1949 2.396590 TTCGTAGAAATGAGGGTGGC 57.603 50.000 0.00 0.00 45.90 5.01
1704 1981 1.558756 CAGTGAAGGGAATCTCCAGCT 59.441 52.381 0.00 0.00 38.64 4.24
1777 2054 1.301009 GCCGTATCACAGCTAGCCC 60.301 63.158 12.13 0.00 0.00 5.19
1877 2175 3.262420 CTCTTCCATAACTGGGTGTTCG 58.738 50.000 0.00 0.00 43.34 3.95
1878 2176 3.263425 TCCTCTTCCATAACTGGGTGTTC 59.737 47.826 0.00 0.00 43.34 3.18
2121 3235 6.814076 GTGTAGACACTTTCGAATGGATAG 57.186 41.667 14.74 4.29 43.25 2.08
2235 3396 7.065283 GTCATGAAGCAGCAAAATAAACAAAC 58.935 34.615 0.00 0.00 0.00 2.93
2291 3452 1.279271 GGGAGTACCACAAGCATCACT 59.721 52.381 0.00 0.00 39.85 3.41
2292 3453 1.279271 AGGGAGTACCACAAGCATCAC 59.721 52.381 0.00 0.00 43.89 3.06
2293 3454 1.555075 GAGGGAGTACCACAAGCATCA 59.445 52.381 0.00 0.00 43.89 3.07
2294 3455 1.134371 GGAGGGAGTACCACAAGCATC 60.134 57.143 0.00 0.00 43.89 3.91
2295 3456 0.912486 GGAGGGAGTACCACAAGCAT 59.088 55.000 0.00 0.00 43.89 3.79
2296 3457 1.541310 CGGAGGGAGTACCACAAGCA 61.541 60.000 0.00 0.00 43.89 3.91
2297 3458 1.218316 CGGAGGGAGTACCACAAGC 59.782 63.158 0.00 0.00 43.89 4.01
2298 3459 0.974383 AACGGAGGGAGTACCACAAG 59.026 55.000 0.00 0.00 43.89 3.16
2358 3523 4.304110 TGTTCACTCATTTCAGTCCGTAC 58.696 43.478 0.00 0.00 0.00 3.67
2484 3653 3.063997 GCGAGATGTACCAAACCAGATTG 59.936 47.826 0.00 0.00 0.00 2.67
2490 3659 1.670811 CATGGCGAGATGTACCAAACC 59.329 52.381 0.00 0.00 36.94 3.27
2491 3660 1.670811 CCATGGCGAGATGTACCAAAC 59.329 52.381 0.00 0.00 36.94 2.93
2492 3661 2.016604 GCCATGGCGAGATGTACCAAA 61.017 52.381 23.48 0.00 36.94 3.28
2493 3662 0.463654 GCCATGGCGAGATGTACCAA 60.464 55.000 23.48 0.00 36.94 3.67
2494 3663 1.146041 GCCATGGCGAGATGTACCA 59.854 57.895 23.48 0.00 37.99 3.25
2495 3664 1.598130 GGCCATGGCGAGATGTACC 60.598 63.158 29.90 9.36 43.06 3.34
2496 3665 1.598130 GGGCCATGGCGAGATGTAC 60.598 63.158 29.90 13.43 43.06 2.90
2497 3666 2.828868 GGGCCATGGCGAGATGTA 59.171 61.111 29.90 0.00 43.06 2.29
2498 3667 4.552365 CGGGCCATGGCGAGATGT 62.552 66.667 29.90 0.00 43.06 3.06
2649 5456 2.044946 GGCGGCACCAAGAGGATT 60.045 61.111 3.07 0.00 38.86 3.01
3091 6703 9.184523 TGGATAAAATTTGACCGAAATACAGAT 57.815 29.630 0.00 0.00 32.76 2.90
3092 6704 8.568676 TGGATAAAATTTGACCGAAATACAGA 57.431 30.769 0.00 0.00 32.76 3.41
3187 6800 2.764128 GCCCCTGACCGAGATGGA 60.764 66.667 0.00 0.00 42.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.