Multiple sequence alignment - TraesCS6B01G103600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G103600 chr6B 100.000 5929 0 0 1 5929 82003615 82009543 0.000000e+00 10949.0
1 TraesCS6B01G103600 chr6B 92.308 1339 87 7 835 2159 82156506 82157842 0.000000e+00 1888.0
2 TraesCS6B01G103600 chr6B 90.352 1306 75 30 4648 5929 82161745 82163023 0.000000e+00 1666.0
3 TraesCS6B01G103600 chr6B 84.559 1509 166 39 828 2301 82165765 82167241 0.000000e+00 1434.0
4 TraesCS6B01G103600 chr6B 80.367 1309 222 25 992 2281 77764784 77763492 0.000000e+00 961.0
5 TraesCS6B01G103600 chr6B 80.168 1311 217 29 993 2279 60593806 60595097 0.000000e+00 941.0
6 TraesCS6B01G103600 chr6B 79.398 1330 227 28 978 2278 62125613 62126924 0.000000e+00 894.0
7 TraesCS6B01G103600 chr6B 76.976 1303 227 39 1009 2281 82427465 82426206 0.000000e+00 676.0
8 TraesCS6B01G103600 chr6B 89.583 528 41 3 265 780 672201335 672200810 0.000000e+00 658.0
9 TraesCS6B01G103600 chr6B 75.361 1315 246 56 1007 2281 79642153 79640877 4.010000e-156 562.0
10 TraesCS6B01G103600 chr6B 87.391 460 49 8 2969 3422 82167809 82168265 2.450000e-143 520.0
11 TraesCS6B01G103600 chr6B 92.424 330 22 3 2501 2828 82158908 82159236 9.000000e-128 468.0
12 TraesCS6B01G103600 chr6B 87.113 388 18 11 4260 4628 82161382 82161756 1.540000e-110 411.0
13 TraesCS6B01G103600 chr6B 89.905 317 20 6 2192 2501 82157841 82158152 1.200000e-106 398.0
14 TraesCS6B01G103600 chr6B 90.876 274 20 3 3505 3774 82160764 82161036 4.370000e-96 363.0
15 TraesCS6B01G103600 chr6B 84.697 379 38 8 5293 5664 82188968 82189333 1.570000e-95 361.0
16 TraesCS6B01G103600 chr6B 85.345 348 47 4 998 1343 82549919 82549574 2.030000e-94 357.0
17 TraesCS6B01G103600 chr6B 90.129 233 18 3 3117 3349 82160198 82160425 1.250000e-76 298.0
18 TraesCS6B01G103600 chr6B 93.333 195 9 4 2870 3064 82159236 82159426 9.730000e-73 285.0
19 TraesCS6B01G103600 chr6B 83.904 292 26 10 13 304 672201605 672201335 5.890000e-65 259.0
20 TraesCS6B01G103600 chr6B 84.127 252 28 5 3534 3777 82186332 82186579 3.570000e-57 233.0
21 TraesCS6B01G103600 chr6B 76.802 444 74 18 4654 5080 79849244 79849675 7.730000e-54 222.0
22 TraesCS6B01G103600 chr6B 79.603 353 22 17 4322 4632 82186862 82187206 2.170000e-49 207.0
23 TraesCS6B01G103600 chr6B 89.362 94 6 1 3420 3509 82160551 82160644 1.350000e-21 115.0
24 TraesCS6B01G103600 chr6B 94.872 39 2 0 200 238 82003735 82003773 1.780000e-05 62.1
25 TraesCS6B01G103600 chr6B 94.872 39 2 0 121 159 82003814 82003852 1.780000e-05 62.1
26 TraesCS6B01G103600 chrUn 91.986 3157 174 34 791 3918 27072902 27076008 0.000000e+00 4355.0
27 TraesCS6B01G103600 chrUn 93.800 1129 42 13 4078 5190 27076007 27077123 0.000000e+00 1672.0
28 TraesCS6B01G103600 chrUn 85.353 1502 162 26 835 2301 26971142 26969664 0.000000e+00 1502.0
29 TraesCS6B01G103600 chrUn 82.148 1490 179 34 845 2301 27082483 27083918 0.000000e+00 1197.0
30 TraesCS6B01G103600 chrUn 91.410 780 33 11 13 780 5421619 5422376 0.000000e+00 1038.0
31 TraesCS6B01G103600 chrUn 95.100 653 19 8 5279 5929 27077674 27078315 0.000000e+00 1016.0
32 TraesCS6B01G103600 chrUn 91.084 415 22 6 847 1248 477421603 477422015 1.120000e-151 547.0
33 TraesCS6B01G103600 chrUn 88.069 461 48 7 2969 3425 26969133 26968676 1.880000e-149 540.0
34 TraesCS6B01G103600 chrUn 86.652 457 50 10 2969 3421 27084563 27085012 4.130000e-136 496.0
35 TraesCS6B01G103600 chrUn 80.864 486 65 19 4650 5124 101888339 101888807 2.030000e-94 357.0
36 TraesCS6B01G103600 chrUn 82.857 385 49 10 4735 5113 27971612 27971239 4.430000e-86 329.0
37 TraesCS6B01G103600 chrUn 85.965 285 27 7 5282 5566 27092927 27093198 5.810000e-75 292.0
38 TraesCS6B01G103600 chrUn 86.179 246 22 5 3534 3771 27085290 27085531 7.630000e-64 255.0
39 TraesCS6B01G103600 chrUn 77.226 483 76 18 4651 5113 27370417 27370885 9.860000e-63 252.0
40 TraesCS6B01G103600 chrUn 83.682 239 17 8 4322 4538 27085822 27086060 7.790000e-49 206.0
41 TraesCS6B01G103600 chrUn 79.341 334 19 17 4340 4632 26968247 26967923 7.840000e-44 189.0
42 TraesCS6B01G103600 chrUn 89.209 139 11 2 3540 3678 26968396 26968262 2.840000e-38 171.0
43 TraesCS6B01G103600 chrUn 74.580 476 72 23 2474 2937 26969650 26969212 4.750000e-36 163.0
44 TraesCS6B01G103600 chrUn 84.375 160 10 6 2474 2623 27083932 27084086 6.190000e-30 143.0
45 TraesCS6B01G103600 chrUn 80.153 131 22 3 5524 5651 76833886 76834015 1.760000e-15 95.3
46 TraesCS6B01G103600 chrUn 96.226 53 2 0 5049 5101 27092873 27092925 2.940000e-13 87.9
47 TraesCS6B01G103600 chrUn 83.333 84 10 2 3427 3506 27085039 27085122 2.290000e-09 75.0
48 TraesCS6B01G103600 chrUn 81.609 87 12 2 3427 3509 26968653 26968567 1.070000e-07 69.4
49 TraesCS6B01G103600 chrUn 94.872 39 2 0 200 238 5421727 5421765 1.780000e-05 62.1
50 TraesCS6B01G103600 chr6A 92.738 1556 95 16 1874 3422 47470129 47468585 0.000000e+00 2231.0
51 TraesCS6B01G103600 chr6A 91.809 1343 97 11 823 2159 47488328 47486993 0.000000e+00 1858.0
52 TraesCS6B01G103600 chr6A 93.700 1127 39 13 4078 5190 47468066 47466958 0.000000e+00 1659.0
53 TraesCS6B01G103600 chr6A 88.929 840 84 3 1046 1882 47471752 47470919 0.000000e+00 1027.0
54 TraesCS6B01G103600 chr6A 94.055 656 24 8 5279 5929 47466723 47466078 0.000000e+00 981.0
55 TraesCS6B01G103600 chr6A 83.588 1048 146 10 1271 2301 47462103 47461065 0.000000e+00 959.0
56 TraesCS6B01G103600 chr6A 91.815 672 37 7 5261 5929 47482676 47482020 0.000000e+00 920.0
57 TraesCS6B01G103600 chr6A 79.545 1320 231 22 984 2278 34029170 34030475 0.000000e+00 905.0
58 TraesCS6B01G103600 chr6A 90.113 708 51 12 2192 2894 47486994 47486301 0.000000e+00 902.0
59 TraesCS6B01G103600 chr6A 91.743 545 25 8 4648 5188 47483582 47483054 0.000000e+00 739.0
60 TraesCS6B01G103600 chr6A 93.452 504 18 5 3420 3918 47468558 47468065 0.000000e+00 734.0
61 TraesCS6B01G103600 chr6A 85.333 600 56 15 5282 5862 47446805 47446219 5.120000e-165 592.0
62 TraesCS6B01G103600 chr6A 85.333 600 56 15 5282 5862 47458534 47457948 5.120000e-165 592.0
63 TraesCS6B01G103600 chr6A 91.864 295 19 3 3055 3349 47485170 47484881 1.990000e-109 407.0
64 TraesCS6B01G103600 chr6A 81.366 483 65 19 4651 5124 34180455 34180921 2.610000e-98 370.0
65 TraesCS6B01G103600 chr6A 84.733 393 21 5 4263 4628 47483951 47483571 2.030000e-94 357.0
66 TraesCS6B01G103600 chr6A 90.335 269 20 3 3512 3777 47484539 47484274 1.220000e-91 348.0
67 TraesCS6B01G103600 chr6A 86.179 246 22 5 3540 3777 47448160 47447919 7.630000e-64 255.0
68 TraesCS6B01G103600 chr6A 86.179 246 22 5 3540 3777 47459889 47459648 7.630000e-64 255.0
69 TraesCS6B01G103600 chr6A 81.127 355 15 11 4322 4632 47447629 47447283 2.760000e-58 237.0
70 TraesCS6B01G103600 chr6A 81.127 355 15 11 4322 4632 47459358 47459012 2.760000e-58 237.0
71 TraesCS6B01G103600 chr6A 84.914 232 27 7 3191 3421 47448660 47448436 1.660000e-55 228.0
72 TraesCS6B01G103600 chr6A 84.848 231 24 8 3191 3421 47460384 47460165 7.730000e-54 222.0
73 TraesCS6B01G103600 chr6A 91.071 168 9 4 5762 5929 435303878 435304039 7.730000e-54 222.0
74 TraesCS6B01G103600 chr6A 84.177 158 14 4 2474 2623 47461051 47460897 6.190000e-30 143.0
75 TraesCS6B01G103600 chr6A 83.740 123 6 7 5057 5169 45756602 45756720 2.920000e-18 104.0
76 TraesCS6B01G103600 chr6A 84.337 83 9 2 3427 3509 47448409 47448331 1.770000e-10 78.7
77 TraesCS6B01G103600 chr6A 84.337 83 9 2 3427 3509 47460138 47460060 1.770000e-10 78.7
78 TraesCS6B01G103600 chr6D 79.774 1325 227 23 984 2281 28658349 28657039 0.000000e+00 924.0
79 TraesCS6B01G103600 chr6D 82.676 583 84 11 1007 1587 29152860 29152293 8.870000e-138 501.0
80 TraesCS6B01G103600 chr6D 78.116 329 55 10 4778 5091 28656306 28655980 6.060000e-45 193.0
81 TraesCS6B01G103600 chr6D 78.261 161 28 7 5474 5629 27206916 27206758 4.890000e-16 97.1
82 TraesCS6B01G103600 chr5B 83.871 806 60 30 13 780 322413213 322412440 0.000000e+00 704.0
83 TraesCS6B01G103600 chr5B 82.840 338 41 12 3772 4102 528574278 528574605 2.700000e-73 287.0
84 TraesCS6B01G103600 chr5B 83.121 314 43 10 3772 4080 591646716 591647024 1.630000e-70 278.0
85 TraesCS6B01G103600 chr5B 89.032 155 13 3 2319 2471 98663330 98663178 7.840000e-44 189.0
86 TraesCS6B01G103600 chr5B 97.143 35 1 0 200 234 322413092 322413058 6.420000e-05 60.2
87 TraesCS6B01G103600 chr7B 80.890 764 76 36 65 780 588920261 588919520 6.760000e-149 538.0
88 TraesCS6B01G103600 chr7B 88.462 156 13 3 2319 2471 453623290 453623443 3.650000e-42 183.0
89 TraesCS6B01G103600 chr3B 78.562 765 82 45 61 780 594409088 594409815 4.250000e-116 429.0
90 TraesCS6B01G103600 chr3B 78.385 768 79 47 61 780 796886258 796886986 9.190000e-113 418.0
91 TraesCS6B01G103600 chr3B 82.103 447 47 15 367 780 21452939 21452493 9.450000e-93 351.0
92 TraesCS6B01G103600 chr3B 79.404 403 51 19 397 780 547205022 547204633 7.630000e-64 255.0
93 TraesCS6B01G103600 chr3B 83.333 270 21 13 61 329 547205361 547205115 1.660000e-55 228.0
94 TraesCS6B01G103600 chr3B 87.234 141 11 6 192 329 21453166 21453030 2.860000e-33 154.0
95 TraesCS6B01G103600 chr3B 97.183 71 2 0 61 131 21453242 21453172 2.900000e-23 121.0
96 TraesCS6B01G103600 chr1B 88.254 315 31 5 3772 4083 359208730 359208419 7.260000e-99 372.0
97 TraesCS6B01G103600 chr1B 83.832 334 42 9 3775 4102 165768399 165768726 2.080000e-79 307.0
98 TraesCS6B01G103600 chr1B 73.547 654 103 49 170 780 684049081 684049707 1.010000e-42 185.0
99 TraesCS6B01G103600 chr3D 86.850 327 37 4 3776 4101 445035418 445035739 1.570000e-95 361.0
100 TraesCS6B01G103600 chr2B 76.956 703 84 42 61 720 103328264 103327597 4.430000e-86 329.0
101 TraesCS6B01G103600 chr5D 85.761 309 38 5 3774 4079 448333315 448333620 7.410000e-84 322.0
102 TraesCS6B01G103600 chr4A 84.337 332 42 5 3776 4105 714441926 714441603 3.450000e-82 316.0
103 TraesCS6B01G103600 chr4A 91.071 168 9 4 5762 5929 20832398 20832237 7.730000e-54 222.0
104 TraesCS6B01G103600 chr4A 91.071 168 9 4 5762 5929 193494095 193494256 7.730000e-54 222.0
105 TraesCS6B01G103600 chr4D 82.637 311 45 8 3776 4079 328542816 328542508 3.520000e-67 267.0
106 TraesCS6B01G103600 chr7D 81.329 316 44 12 3776 4082 6009757 6010066 5.940000e-60 243.0
107 TraesCS6B01G103600 chr7D 88.462 156 13 3 2319 2471 436961795 436961948 3.650000e-42 183.0
108 TraesCS6B01G103600 chr5A 91.071 168 9 4 5762 5929 8626327 8626488 7.730000e-54 222.0
109 TraesCS6B01G103600 chr5A 91.071 168 9 4 5762 5929 33288517 33288678 7.730000e-54 222.0
110 TraesCS6B01G103600 chr1A 91.071 168 9 4 5762 5929 412353748 412353909 7.730000e-54 222.0
111 TraesCS6B01G103600 chr7A 87.821 156 14 4 2319 2471 486929940 486930093 1.700000e-40 178.0
112 TraesCS6B01G103600 chr7A 86.792 159 17 3 2319 2475 462978587 462978743 2.200000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G103600 chr6B 82003615 82009543 5928 False 10949.000000 10949 100.000000 1 5929 1 chr6B.!!$F4 5928
1 TraesCS6B01G103600 chr6B 77763492 77764784 1292 True 961.000000 961 80.367000 992 2281 1 chr6B.!!$R1 1289
2 TraesCS6B01G103600 chr6B 60593806 60595097 1291 False 941.000000 941 80.168000 993 2279 1 chr6B.!!$F1 1286
3 TraesCS6B01G103600 chr6B 62125613 62126924 1311 False 894.000000 894 79.398000 978 2278 1 chr6B.!!$F2 1300
4 TraesCS6B01G103600 chr6B 82156506 82168265 11759 False 713.272727 1888 89.795636 828 5929 11 chr6B.!!$F6 5101
5 TraesCS6B01G103600 chr6B 82426206 82427465 1259 True 676.000000 676 76.976000 1009 2281 1 chr6B.!!$R3 1272
6 TraesCS6B01G103600 chr6B 79640877 79642153 1276 True 562.000000 562 75.361000 1007 2281 1 chr6B.!!$R2 1274
7 TraesCS6B01G103600 chr6B 672200810 672201605 795 True 458.500000 658 86.743500 13 780 2 chr6B.!!$R5 767
8 TraesCS6B01G103600 chr6B 82186332 82189333 3001 False 267.000000 361 82.809000 3534 5664 3 chr6B.!!$F7 2130
9 TraesCS6B01G103600 chrUn 27072902 27078315 5413 False 2347.666667 4355 93.628667 791 5929 3 chrUn.!!$F6 5138
10 TraesCS6B01G103600 chrUn 5421619 5422376 757 False 550.050000 1038 93.141000 13 780 2 chrUn.!!$F5 767
11 TraesCS6B01G103600 chrUn 26967923 26971142 3219 True 439.066667 1502 83.026833 835 4632 6 chrUn.!!$R2 3797
12 TraesCS6B01G103600 chrUn 27082483 27086060 3577 False 395.333333 1197 84.394833 845 4538 6 chrUn.!!$F7 3693
13 TraesCS6B01G103600 chr6A 34029170 34030475 1305 False 905.000000 905 79.545000 984 2278 1 chr6A.!!$F1 1294
14 TraesCS6B01G103600 chr6A 47482020 47488328 6308 True 790.142857 1858 90.344571 823 5929 7 chr6A.!!$R3 5106
15 TraesCS6B01G103600 chr6A 47457948 47471752 13804 True 759.891667 2231 87.705250 1046 5929 12 chr6A.!!$R2 4883
16 TraesCS6B01G103600 chr6A 47446219 47448660 2441 True 278.140000 592 84.378000 3191 5862 5 chr6A.!!$R1 2671
17 TraesCS6B01G103600 chr6D 28655980 28658349 2369 True 558.500000 924 78.945000 984 5091 2 chr6D.!!$R3 4107
18 TraesCS6B01G103600 chr6D 29152293 29152860 567 True 501.000000 501 82.676000 1007 1587 1 chr6D.!!$R2 580
19 TraesCS6B01G103600 chr5B 322412440 322413213 773 True 382.100000 704 90.507000 13 780 2 chr5B.!!$R2 767
20 TraesCS6B01G103600 chr7B 588919520 588920261 741 True 538.000000 538 80.890000 65 780 1 chr7B.!!$R1 715
21 TraesCS6B01G103600 chr3B 594409088 594409815 727 False 429.000000 429 78.562000 61 780 1 chr3B.!!$F1 719
22 TraesCS6B01G103600 chr3B 796886258 796886986 728 False 418.000000 418 78.385000 61 780 1 chr3B.!!$F2 719
23 TraesCS6B01G103600 chr3B 547204633 547205361 728 True 241.500000 255 81.368500 61 780 2 chr3B.!!$R2 719
24 TraesCS6B01G103600 chr3B 21452493 21453242 749 True 208.666667 351 88.840000 61 780 3 chr3B.!!$R1 719
25 TraesCS6B01G103600 chr2B 103327597 103328264 667 True 329.000000 329 76.956000 61 720 1 chr2B.!!$R1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 245 0.107361 CGGGTTCCAATCCCCTGTAC 60.107 60.0 0.00 0.00 41.78 2.90 F
960 1142 0.179171 GCTCGCGCTGTAGTACTTCA 60.179 55.0 5.56 0.29 0.00 3.02 F
1849 2079 0.463474 GCTTGGTCTCCTCAGGATGC 60.463 60.0 0.00 0.00 34.76 3.91 F
3096 14862 0.507358 GCCGACGTTCTGTTGTTCTC 59.493 55.0 0.00 0.00 0.00 2.87 F
3759 16514 0.586319 GCGTCTTGCTAGTTTGTGCA 59.414 50.0 0.00 0.00 41.73 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 1998 1.130054 TTCCAGCAGCTGACCTCCTT 61.130 55.000 24.9 0.0 32.44 3.36 R
2316 12029 1.553704 ACAATGAACGGAGGGAGTACC 59.446 52.381 0.0 0.0 40.67 3.34 R
3721 16476 0.605319 CTAAAGCGAGGGTGTTGGCA 60.605 55.000 0.0 0.0 0.00 4.92 R
4090 16845 1.148236 AGCTACCTCATACTCCCTCCC 59.852 57.143 0.0 0.0 0.00 4.30 R
5210 18414 0.105246 ATCACTGGAGGGGCTAGAGG 60.105 60.000 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.354234 GGAAAGGCAACGAATTCTGAAGATA 59.646 40.000 3.52 0.00 46.39 1.98
50 51 8.433421 TGAAGATATAAACTTGGATTCGGTTC 57.567 34.615 0.00 0.00 0.00 3.62
63 77 5.163353 TGGATTCGGTTCTGTGCAGATATAA 60.163 40.000 2.47 0.00 37.29 0.98
217 231 9.602568 AAAATTTGTAAGATTTGTAAACGGGTT 57.397 25.926 0.00 0.00 0.00 4.11
218 232 8.806177 AATTTGTAAGATTTGTAAACGGGTTC 57.194 30.769 0.00 0.00 0.00 3.62
219 233 5.945466 TGTAAGATTTGTAAACGGGTTCC 57.055 39.130 0.00 0.00 0.00 3.62
220 234 5.374921 TGTAAGATTTGTAAACGGGTTCCA 58.625 37.500 0.00 0.00 0.00 3.53
221 235 5.826737 TGTAAGATTTGTAAACGGGTTCCAA 59.173 36.000 0.00 0.00 0.00 3.53
222 236 6.490721 TGTAAGATTTGTAAACGGGTTCCAAT 59.509 34.615 0.00 0.00 0.00 3.16
223 237 5.638596 AGATTTGTAAACGGGTTCCAATC 57.361 39.130 0.00 0.00 0.00 2.67
224 238 4.461431 AGATTTGTAAACGGGTTCCAATCC 59.539 41.667 0.00 0.00 0.00 3.01
225 239 2.203470 TGTAAACGGGTTCCAATCCC 57.797 50.000 0.00 0.00 41.41 3.85
226 240 1.272037 TGTAAACGGGTTCCAATCCCC 60.272 52.381 0.00 0.00 41.78 4.81
227 241 1.005097 GTAAACGGGTTCCAATCCCCT 59.995 52.381 0.00 0.00 41.78 4.79
228 242 0.251608 AAACGGGTTCCAATCCCCTG 60.252 55.000 0.00 0.00 41.78 4.45
229 243 1.432023 AACGGGTTCCAATCCCCTGT 61.432 55.000 0.00 0.00 41.78 4.00
230 244 0.548197 ACGGGTTCCAATCCCCTGTA 60.548 55.000 0.00 0.00 41.78 2.74
231 245 0.107361 CGGGTTCCAATCCCCTGTAC 60.107 60.000 0.00 0.00 41.78 2.90
232 246 0.257905 GGGTTCCAATCCCCTGTACC 59.742 60.000 0.00 0.00 39.08 3.34
267 320 3.195825 GGCATACCTAGATGATAGCGGTT 59.804 47.826 0.00 0.00 0.00 4.44
473 606 2.544844 AATGGGAGAAGAGGGTACGA 57.455 50.000 0.00 0.00 0.00 3.43
703 869 0.874607 GTAGCGGTAGGTTGCATCGG 60.875 60.000 0.00 0.00 0.00 4.18
723 889 1.205568 GACGAAAATTGACCGCGCA 59.794 52.632 8.75 0.00 0.00 6.09
780 946 4.662468 CTGCTGCATTAGGAGTAGAGAA 57.338 45.455 1.31 0.00 46.25 2.87
781 947 5.212532 CTGCTGCATTAGGAGTAGAGAAT 57.787 43.478 1.31 0.00 46.25 2.40
782 948 4.953667 TGCTGCATTAGGAGTAGAGAATG 58.046 43.478 0.00 0.00 35.34 2.67
783 949 4.406972 TGCTGCATTAGGAGTAGAGAATGT 59.593 41.667 0.00 0.00 35.34 2.71
784 950 5.598417 TGCTGCATTAGGAGTAGAGAATGTA 59.402 40.000 0.00 0.00 35.34 2.29
785 951 6.268617 TGCTGCATTAGGAGTAGAGAATGTAT 59.731 38.462 0.00 0.00 35.34 2.29
786 952 7.451566 TGCTGCATTAGGAGTAGAGAATGTATA 59.548 37.037 0.00 0.00 35.34 1.47
787 953 7.757624 GCTGCATTAGGAGTAGAGAATGTATAC 59.242 40.741 0.00 0.00 35.34 1.47
788 954 8.123639 TGCATTAGGAGTAGAGAATGTATACC 57.876 38.462 0.00 0.00 32.89 2.73
789 955 7.950684 TGCATTAGGAGTAGAGAATGTATACCT 59.049 37.037 0.00 0.00 32.89 3.08
960 1142 0.179171 GCTCGCGCTGTAGTACTTCA 60.179 55.000 5.56 0.29 0.00 3.02
961 1143 1.536149 CTCGCGCTGTAGTACTTCAC 58.464 55.000 5.56 0.00 0.00 3.18
962 1144 1.130749 CTCGCGCTGTAGTACTTCACT 59.869 52.381 5.56 0.00 41.62 3.41
964 1146 2.030540 TCGCGCTGTAGTACTTCACTTT 60.031 45.455 5.56 0.00 38.80 2.66
1003 1190 1.115467 AGTTAGTGAGGGCGAGATGG 58.885 55.000 0.00 0.00 0.00 3.51
1577 1782 1.566018 GCGCTCGCCTGTGTTTACTT 61.566 55.000 0.00 0.00 34.56 2.24
1638 1843 1.640593 TTCCACACCAGGCAGTCCAA 61.641 55.000 0.00 0.00 33.74 3.53
1663 1869 3.063452 CGATGTAATCAGTTTTCCCACCG 59.937 47.826 0.00 0.00 45.97 4.94
1730 1942 2.407090 GCTGCTTGTTGGGAATTTCAC 58.593 47.619 0.00 0.00 0.00 3.18
1786 1998 0.608130 AGCTGTGATACGACTGCCAA 59.392 50.000 0.00 0.00 40.62 4.52
1849 2079 0.463474 GCTTGGTCTCCTCAGGATGC 60.463 60.000 0.00 0.00 34.76 3.91
1854 2084 1.422531 GTCTCCTCAGGATGCCAGAT 58.577 55.000 0.00 0.00 34.76 2.90
1932 2963 1.281867 TGGGTGCTTGGAAGGACTATG 59.718 52.381 10.41 0.00 45.42 2.23
1933 2964 1.559682 GGGTGCTTGGAAGGACTATGA 59.440 52.381 10.41 0.00 45.42 2.15
2028 3077 2.057137 ATGTGTTGTTGCTGTGGACT 57.943 45.000 0.00 0.00 0.00 3.85
2050 3099 0.681887 TATCGGCCTCTTCGTGGTCA 60.682 55.000 0.00 0.00 0.00 4.02
2281 11978 5.221402 TGTTTATTTTGCTGCTTCATGACCA 60.221 36.000 0.00 0.00 0.00 4.02
2316 12029 4.005650 ACTTATGTCCTGATGCTTGTGTG 58.994 43.478 0.00 0.00 0.00 3.82
2335 12048 1.553248 TGGTACTCCCTCCGTTCATTG 59.447 52.381 0.00 0.00 0.00 2.82
2344 12057 5.914033 TCCCTCCGTTCATTGTTATAAGAG 58.086 41.667 0.00 0.00 0.00 2.85
2345 12058 5.659525 TCCCTCCGTTCATTGTTATAAGAGA 59.340 40.000 0.00 0.00 0.00 3.10
2347 12060 6.425114 CCCTCCGTTCATTGTTATAAGAGATG 59.575 42.308 0.00 0.00 0.00 2.90
2350 12063 8.786826 TCCGTTCATTGTTATAAGAGATGTTT 57.213 30.769 0.00 0.00 0.00 2.83
2351 12064 9.878667 TCCGTTCATTGTTATAAGAGATGTTTA 57.121 29.630 0.00 0.00 0.00 2.01
2390 12103 5.177696 GGATTACATACGGACTGAAATGAGC 59.822 44.000 7.93 0.00 0.00 4.26
2487 12203 7.226918 GGAGGGAGTAGCTTTTAATGTAATGAC 59.773 40.741 0.00 0.00 0.00 3.06
2616 13237 7.710475 ACCTGTGTTTGAGAAAATAAACAATGG 59.290 33.333 14.83 14.83 45.21 3.16
2623 13253 9.995003 TTTGAGAAAATAAACAATGGTAAGCAT 57.005 25.926 0.00 0.00 0.00 3.79
2705 13337 5.601583 TTGTCTACTGGTACTGTTTGTGA 57.398 39.130 0.00 0.00 41.74 3.58
2713 13345 4.323417 TGGTACTGTTTGTGAATAGCTGG 58.677 43.478 0.00 0.00 0.00 4.85
2725 13357 2.854736 ATAGCTGGAGCCCCATTTTT 57.145 45.000 0.00 0.00 42.59 1.94
2776 13415 9.921637 TTGGAAATTAACTACATAAAAAGCCAG 57.078 29.630 0.00 0.00 0.00 4.85
2925 13715 9.733219 CTTGATTTTAAATTTTGGTGCATGTTT 57.267 25.926 0.00 0.00 0.00 2.83
2985 13905 8.770438 AAAGAGAAGTGATAGCTGAACTAAAG 57.230 34.615 0.00 0.00 33.57 1.85
3020 13941 4.082841 TGCGTTTTGATATCTGCAACATGT 60.083 37.500 3.98 0.00 0.00 3.21
3049 13970 8.037758 CAGCTATACATGCCTTAGCTACTAATT 58.962 37.037 18.76 0.00 45.15 1.40
3080 14846 2.223456 TGTTCACTTGTGACAATTGCCG 60.223 45.455 10.39 0.00 0.00 5.69
3096 14862 0.507358 GCCGACGTTCTGTTGTTCTC 59.493 55.000 0.00 0.00 0.00 2.87
3127 15635 8.124823 CAGTGATAAATAGCATGTTTACTGGTG 58.875 37.037 0.00 0.00 0.00 4.17
3261 15774 0.970937 TCCTGGTAGGAGAAGTGCCG 60.971 60.000 0.00 0.00 40.06 5.69
3268 15782 1.227002 GGAGAAGTGCCGTCCGATC 60.227 63.158 0.00 0.00 0.00 3.69
3297 15811 1.561643 CAGTTGGAGAGTCCCAGCTA 58.438 55.000 13.88 0.00 44.42 3.32
3305 15819 4.195416 GGAGAGTCCCAGCTATTTTTCTG 58.805 47.826 0.00 0.00 0.00 3.02
3308 15822 5.635120 AGAGTCCCAGCTATTTTTCTGTTT 58.365 37.500 0.00 0.00 0.00 2.83
3309 15823 6.071320 AGAGTCCCAGCTATTTTTCTGTTTT 58.929 36.000 0.00 0.00 0.00 2.43
3310 15824 6.551227 AGAGTCCCAGCTATTTTTCTGTTTTT 59.449 34.615 0.00 0.00 0.00 1.94
3350 15891 1.134310 CATGCCAGGACATACAGCTGA 60.134 52.381 23.35 4.31 0.00 4.26
3486 16082 5.514834 CCCGGATCATTGATTAGGTTATGGT 60.515 44.000 0.73 0.00 0.00 3.55
3510 16106 7.387948 GGTCAGCTTGTTTTTAGATGAGAGTTA 59.612 37.037 0.00 0.00 38.57 2.24
3700 16454 6.128282 CCACTATAGTTCATTGTTGCTTCGTT 60.128 38.462 1.56 0.00 0.00 3.85
3721 16476 2.158623 TGAGCACTGTGAAAGATTGGGT 60.159 45.455 12.86 0.00 0.00 4.51
3759 16514 0.586319 GCGTCTTGCTAGTTTGTGCA 59.414 50.000 0.00 0.00 41.73 4.57
3848 16603 5.152923 ACATACGGATGTATATAGACGCG 57.847 43.478 12.79 3.53 44.77 6.01
3851 16606 6.313658 ACATACGGATGTATATAGACGCGTTA 59.686 38.462 12.79 8.45 44.77 3.18
3878 16633 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3879 16634 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3880 16635 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3881 16636 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3882 16637 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3883 16638 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3884 16639 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3892 16647 4.530710 TTTTGCTCCGTATGTAGTCTGT 57.469 40.909 0.00 0.00 0.00 3.41
3904 16659 7.040340 CCGTATGTAGTCTGTATTGGAATCTCT 60.040 40.741 0.00 0.00 0.00 3.10
3916 16671 9.920946 TGTATTGGAATCTCTAAAAAGGCTTAT 57.079 29.630 0.00 0.00 0.00 1.73
3920 16675 9.614792 TTGGAATCTCTAAAAAGGCTTATACTC 57.385 33.333 0.00 0.00 0.00 2.59
3921 16676 8.211629 TGGAATCTCTAAAAAGGCTTATACTCC 58.788 37.037 0.00 0.00 0.00 3.85
3922 16677 7.662258 GGAATCTCTAAAAAGGCTTATACTCCC 59.338 40.741 0.00 0.00 0.00 4.30
3923 16678 7.939376 ATCTCTAAAAAGGCTTATACTCCCT 57.061 36.000 0.00 0.00 0.00 4.20
3924 16679 7.362802 TCTCTAAAAAGGCTTATACTCCCTC 57.637 40.000 0.00 0.00 0.00 4.30
3925 16680 6.326843 TCTCTAAAAAGGCTTATACTCCCTCC 59.673 42.308 0.00 0.00 0.00 4.30
3926 16681 3.840124 AAAAGGCTTATACTCCCTCCG 57.160 47.619 0.00 0.00 0.00 4.63
3927 16682 2.473576 AAGGCTTATACTCCCTCCGT 57.526 50.000 0.00 0.00 0.00 4.69
3928 16683 2.473576 AGGCTTATACTCCCTCCGTT 57.526 50.000 0.00 0.00 0.00 4.44
3929 16684 2.317973 AGGCTTATACTCCCTCCGTTC 58.682 52.381 0.00 0.00 0.00 3.95
3930 16685 1.343789 GGCTTATACTCCCTCCGTTCC 59.656 57.143 0.00 0.00 0.00 3.62
3931 16686 2.317973 GCTTATACTCCCTCCGTTCCT 58.682 52.381 0.00 0.00 0.00 3.36
3932 16687 3.494332 GCTTATACTCCCTCCGTTCCTA 58.506 50.000 0.00 0.00 0.00 2.94
3933 16688 3.893813 GCTTATACTCCCTCCGTTCCTAA 59.106 47.826 0.00 0.00 0.00 2.69
3934 16689 4.343239 GCTTATACTCCCTCCGTTCCTAAA 59.657 45.833 0.00 0.00 0.00 1.85
3935 16690 5.011840 GCTTATACTCCCTCCGTTCCTAAAT 59.988 44.000 0.00 0.00 0.00 1.40
3936 16691 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
3937 16692 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
3938 16693 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
3939 16694 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
3940 16695 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
3941 16696 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
3942 16697 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
3943 16698 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
3944 16699 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3945 16700 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3946 16701 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
3947 16702 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
3948 16703 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
3949 16704 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
3950 16705 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
3951 16706 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
3952 16707 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
3958 16713 8.779354 AATGTAAGTCTTTGTAGAGATTCCAC 57.221 34.615 0.00 0.00 0.00 4.02
3959 16714 7.540474 TGTAAGTCTTTGTAGAGATTCCACT 57.460 36.000 0.00 0.00 0.00 4.00
3960 16715 8.645814 TGTAAGTCTTTGTAGAGATTCCACTA 57.354 34.615 0.00 0.00 0.00 2.74
3961 16716 9.256228 TGTAAGTCTTTGTAGAGATTCCACTAT 57.744 33.333 0.00 0.00 0.00 2.12
3968 16723 8.718102 TTTGTAGAGATTCCACTATAAACTGC 57.282 34.615 0.00 0.00 29.58 4.40
3969 16724 7.418337 TGTAGAGATTCCACTATAAACTGCA 57.582 36.000 0.00 0.00 0.00 4.41
3970 16725 8.023021 TGTAGAGATTCCACTATAAACTGCAT 57.977 34.615 0.00 0.00 0.00 3.96
3971 16726 9.143155 TGTAGAGATTCCACTATAAACTGCATA 57.857 33.333 0.00 0.00 0.00 3.14
3972 16727 9.413048 GTAGAGATTCCACTATAAACTGCATAC 57.587 37.037 0.00 0.00 0.00 2.39
3973 16728 8.023021 AGAGATTCCACTATAAACTGCATACA 57.977 34.615 0.00 0.00 0.00 2.29
3992 16747 9.895138 TGCATACAGATGTATATAGATGCATTT 57.105 29.630 12.47 0.00 38.38 2.32
4019 16774 8.538409 AAGTTTAGATTCATTCATTTTGCACC 57.462 30.769 0.00 0.00 0.00 5.01
4020 16775 6.808212 AGTTTAGATTCATTCATTTTGCACCG 59.192 34.615 0.00 0.00 0.00 4.94
4021 16776 4.789012 AGATTCATTCATTTTGCACCGT 57.211 36.364 0.00 0.00 0.00 4.83
4022 16777 5.895636 AGATTCATTCATTTTGCACCGTA 57.104 34.783 0.00 0.00 0.00 4.02
4023 16778 6.455360 AGATTCATTCATTTTGCACCGTAT 57.545 33.333 0.00 0.00 0.00 3.06
4024 16779 6.267817 AGATTCATTCATTTTGCACCGTATG 58.732 36.000 0.00 0.00 0.00 2.39
4025 16780 5.384063 TTCATTCATTTTGCACCGTATGT 57.616 34.783 0.00 0.00 0.00 2.29
4026 16781 6.502136 TTCATTCATTTTGCACCGTATGTA 57.498 33.333 0.00 0.00 0.00 2.29
4027 16782 6.117911 TCATTCATTTTGCACCGTATGTAG 57.882 37.500 0.00 0.00 0.00 2.74
4028 16783 5.645929 TCATTCATTTTGCACCGTATGTAGT 59.354 36.000 0.00 0.00 0.00 2.73
4029 16784 5.539582 TTCATTTTGCACCGTATGTAGTC 57.460 39.130 0.00 0.00 0.00 2.59
4030 16785 3.936453 TCATTTTGCACCGTATGTAGTCC 59.064 43.478 0.00 0.00 0.00 3.85
4031 16786 3.404224 TTTTGCACCGTATGTAGTCCA 57.596 42.857 0.00 0.00 0.00 4.02
4032 16787 3.620427 TTTGCACCGTATGTAGTCCAT 57.380 42.857 0.00 0.00 37.58 3.41
4033 16788 2.882927 TGCACCGTATGTAGTCCATC 57.117 50.000 0.00 0.00 34.86 3.51
4034 16789 2.384828 TGCACCGTATGTAGTCCATCT 58.615 47.619 0.00 0.00 34.86 2.90
4035 16790 3.558033 TGCACCGTATGTAGTCCATCTA 58.442 45.455 0.00 0.00 34.86 1.98
4036 16791 3.568430 TGCACCGTATGTAGTCCATCTAG 59.432 47.826 0.00 0.00 34.86 2.43
4037 16792 3.568853 GCACCGTATGTAGTCCATCTAGT 59.431 47.826 0.00 0.00 34.86 2.57
4038 16793 4.556898 GCACCGTATGTAGTCCATCTAGTG 60.557 50.000 0.00 0.00 34.86 2.74
4039 16794 4.820173 CACCGTATGTAGTCCATCTAGTGA 59.180 45.833 0.00 0.00 34.86 3.41
4040 16795 5.298527 CACCGTATGTAGTCCATCTAGTGAA 59.701 44.000 0.00 0.00 34.86 3.18
4041 16796 5.889853 ACCGTATGTAGTCCATCTAGTGAAA 59.110 40.000 0.00 0.00 34.86 2.69
4042 16797 6.550108 ACCGTATGTAGTCCATCTAGTGAAAT 59.450 38.462 0.00 0.00 34.86 2.17
4043 16798 7.085116 CCGTATGTAGTCCATCTAGTGAAATC 58.915 42.308 0.00 0.00 34.86 2.17
4044 16799 7.040340 CCGTATGTAGTCCATCTAGTGAAATCT 60.040 40.741 0.00 0.00 34.86 2.40
4045 16800 8.018520 CGTATGTAGTCCATCTAGTGAAATCTC 58.981 40.741 0.00 0.00 34.86 2.75
4046 16801 9.073475 GTATGTAGTCCATCTAGTGAAATCTCT 57.927 37.037 0.00 0.00 34.86 3.10
4048 16803 9.647918 ATGTAGTCCATCTAGTGAAATCTCTAA 57.352 33.333 0.00 0.00 0.00 2.10
4049 16804 9.475620 TGTAGTCCATCTAGTGAAATCTCTAAA 57.524 33.333 0.00 0.00 0.00 1.85
4052 16807 9.883142 AGTCCATCTAGTGAAATCTCTAAAAAG 57.117 33.333 0.00 0.00 0.00 2.27
4053 16808 9.877178 GTCCATCTAGTGAAATCTCTAAAAAGA 57.123 33.333 0.00 0.00 0.00 2.52
4054 16809 9.877178 TCCATCTAGTGAAATCTCTAAAAAGAC 57.123 33.333 0.00 0.00 0.00 3.01
4055 16810 9.883142 CCATCTAGTGAAATCTCTAAAAAGACT 57.117 33.333 0.00 0.00 0.00 3.24
4073 16828 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4074 16829 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4075 16830 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4076 16831 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4090 16845 5.139001 ACGGAGGGAGTAGTATTTAGGAAG 58.861 45.833 0.00 0.00 0.00 3.46
4094 16849 5.718039 AGGGAGTAGTATTTAGGAAGGGAG 58.282 45.833 0.00 0.00 0.00 4.30
4181 16936 6.002062 ACAACTACATGAAAACTAGCTTGC 57.998 37.500 0.00 0.00 0.00 4.01
4196 16951 4.445452 AGCTTGCACCAACTGAAATATG 57.555 40.909 0.00 0.00 0.00 1.78
4595 17680 5.719173 AGTTATGTCTCTTCTGAGTTCTGC 58.281 41.667 0.00 0.00 40.98 4.26
4628 17713 4.937620 GGTCTGAGTGTGCATCTTCATTTA 59.062 41.667 0.00 0.00 0.00 1.40
4629 17714 5.587844 GGTCTGAGTGTGCATCTTCATTTAT 59.412 40.000 0.00 0.00 0.00 1.40
4630 17715 6.094603 GGTCTGAGTGTGCATCTTCATTTATT 59.905 38.462 0.00 0.00 0.00 1.40
4757 17847 8.430801 TGTTCCTAATGTTGTTTCAAAATTGG 57.569 30.769 7.80 5.35 0.00 3.16
4854 17945 6.648725 GCTTTTCATTGGCTTGTTATTGGTTA 59.351 34.615 0.00 0.00 0.00 2.85
4906 17999 0.620556 GGTGGTGGACATGATGGAGT 59.379 55.000 0.00 0.00 0.00 3.85
4979 18074 3.054679 TACCGGTTGAGCAGGTACA 57.945 52.632 15.04 0.00 43.87 2.90
5155 18359 4.382362 GCTTTGATGCCAGGCTAAATCTTT 60.382 41.667 14.15 0.00 0.00 2.52
5162 18366 6.455360 TGCCAGGCTAAATCTTTAATCTTG 57.545 37.500 14.15 0.00 0.00 3.02
5176 18380 6.672218 TCTTTAATCTTGTCTCCATACTCCCA 59.328 38.462 0.00 0.00 0.00 4.37
5190 18394 4.102113 CCCAAAGTTCCTGCTGGG 57.898 61.111 10.07 0.00 42.60 4.45
5192 18396 0.404040 CCCAAAGTTCCTGCTGGGTA 59.596 55.000 10.07 0.00 43.15 3.69
5193 18397 1.203001 CCCAAAGTTCCTGCTGGGTAA 60.203 52.381 10.07 0.00 43.15 2.85
5194 18398 2.557452 CCCAAAGTTCCTGCTGGGTAAT 60.557 50.000 10.07 0.00 43.15 1.89
5195 18399 2.493278 CCAAAGTTCCTGCTGGGTAATG 59.507 50.000 10.07 3.55 36.25 1.90
5196 18400 3.420893 CAAAGTTCCTGCTGGGTAATGA 58.579 45.455 10.07 0.00 36.25 2.57
5198 18402 2.269940 AGTTCCTGCTGGGTAATGAGT 58.730 47.619 10.07 0.00 36.25 3.41
5199 18403 2.026822 AGTTCCTGCTGGGTAATGAGTG 60.027 50.000 10.07 0.00 36.25 3.51
5203 18407 1.004745 CTGCTGGGTAATGAGTGGGTT 59.995 52.381 0.00 0.00 0.00 4.11
5204 18408 1.004277 TGCTGGGTAATGAGTGGGTTC 59.996 52.381 0.00 0.00 0.00 3.62
5205 18409 1.282157 GCTGGGTAATGAGTGGGTTCT 59.718 52.381 0.00 0.00 0.00 3.01
5206 18410 2.290960 GCTGGGTAATGAGTGGGTTCTT 60.291 50.000 0.00 0.00 0.00 2.52
5208 18412 3.256704 TGGGTAATGAGTGGGTTCTTCT 58.743 45.455 0.00 0.00 0.00 2.85
5209 18413 3.263425 TGGGTAATGAGTGGGTTCTTCTC 59.737 47.826 0.00 0.00 0.00 2.87
5210 18414 3.370633 GGGTAATGAGTGGGTTCTTCTCC 60.371 52.174 0.00 0.00 0.00 3.71
5211 18415 3.370633 GGTAATGAGTGGGTTCTTCTCCC 60.371 52.174 0.00 0.00 44.81 4.30
5213 18417 1.645710 TGAGTGGGTTCTTCTCCCTC 58.354 55.000 2.65 0.00 44.84 4.30
5220 18919 1.124780 GTTCTTCTCCCTCTAGCCCC 58.875 60.000 0.00 0.00 0.00 5.80
5224 18923 1.228920 TTCTCCCTCTAGCCCCTCCA 61.229 60.000 0.00 0.00 0.00 3.86
5232 18934 1.008327 TCTAGCCCCTCCAGTGATTGA 59.992 52.381 0.00 0.00 0.00 2.57
5245 18947 4.102210 CCAGTGATTGATGATACAGGACCT 59.898 45.833 0.00 0.00 0.00 3.85
5248 18950 6.259608 CAGTGATTGATGATACAGGACCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
5259 18961 2.426842 GGACCTTTCCTCATTCCCTG 57.573 55.000 0.00 0.00 39.13 4.45
5275 18977 3.489355 TCCCTGCCTGTTTATGCATATG 58.511 45.455 7.36 0.00 36.79 1.78
5276 18978 3.117550 TCCCTGCCTGTTTATGCATATGT 60.118 43.478 7.36 0.00 36.79 2.29
5333 20393 4.002982 CAGGCAGTAGCAAATGAACTACA 58.997 43.478 0.00 0.00 44.61 2.74
5342 20402 4.762251 AGCAAATGAACTACAAACCCTCTC 59.238 41.667 0.00 0.00 0.00 3.20
5343 20403 4.378459 GCAAATGAACTACAAACCCTCTCG 60.378 45.833 0.00 0.00 0.00 4.04
5344 20404 2.450609 TGAACTACAAACCCTCTCGC 57.549 50.000 0.00 0.00 0.00 5.03
5345 20405 1.001633 TGAACTACAAACCCTCTCGCC 59.998 52.381 0.00 0.00 0.00 5.54
5346 20406 1.275573 GAACTACAAACCCTCTCGCCT 59.724 52.381 0.00 0.00 0.00 5.52
5347 20407 0.896226 ACTACAAACCCTCTCGCCTC 59.104 55.000 0.00 0.00 0.00 4.70
5348 20408 1.187087 CTACAAACCCTCTCGCCTCT 58.813 55.000 0.00 0.00 0.00 3.69
5349 20409 1.135333 CTACAAACCCTCTCGCCTCTC 59.865 57.143 0.00 0.00 0.00 3.20
5365 20425 0.610174 TCTCCTGTGCTTCTGCGATT 59.390 50.000 0.00 0.00 43.34 3.34
5438 20498 3.973305 TCTGTGGCCATGGTTCTATCATA 59.027 43.478 9.72 0.94 0.00 2.15
5449 20509 7.335422 CCATGGTTCTATCATATCCTAGTTTGC 59.665 40.741 2.57 0.00 0.00 3.68
5511 20571 6.391227 AACAGTACCTGAGAATTTGGTTTG 57.609 37.500 0.00 0.00 35.18 2.93
5515 20575 7.141363 CAGTACCTGAGAATTTGGTTTGAAAG 58.859 38.462 0.00 0.00 35.48 2.62
5793 20873 5.629079 AATTTGGCAGCTCTAAACTGTAC 57.371 39.130 0.00 0.00 37.47 2.90
5909 20993 6.818644 TGACTAGATTCACTATGAAAACTGCC 59.181 38.462 0.00 0.00 40.12 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.151202 TCGTTGCCTTTCCAGTTCATC 58.849 47.619 0.00 0.00 0.00 2.92
1 2 2.270352 TCGTTGCCTTTCCAGTTCAT 57.730 45.000 0.00 0.00 0.00 2.57
2 3 2.045561 TTCGTTGCCTTTCCAGTTCA 57.954 45.000 0.00 0.00 0.00 3.18
3 4 3.253432 AGAATTCGTTGCCTTTCCAGTTC 59.747 43.478 0.00 0.00 0.00 3.01
4 5 3.004734 CAGAATTCGTTGCCTTTCCAGTT 59.995 43.478 0.00 0.00 0.00 3.16
5 6 2.554032 CAGAATTCGTTGCCTTTCCAGT 59.446 45.455 0.00 0.00 0.00 4.00
6 7 2.813754 TCAGAATTCGTTGCCTTTCCAG 59.186 45.455 0.00 0.00 0.00 3.86
7 8 2.857483 TCAGAATTCGTTGCCTTTCCA 58.143 42.857 0.00 0.00 0.00 3.53
8 9 3.502211 TCTTCAGAATTCGTTGCCTTTCC 59.498 43.478 0.00 0.00 0.00 3.13
9 10 4.749245 TCTTCAGAATTCGTTGCCTTTC 57.251 40.909 0.00 0.00 0.00 2.62
10 11 8.506168 TTATATCTTCAGAATTCGTTGCCTTT 57.494 30.769 0.00 0.00 0.00 3.11
11 12 8.398665 GTTTATATCTTCAGAATTCGTTGCCTT 58.601 33.333 0.00 0.00 0.00 4.35
32 33 4.156008 GCACAGAACCGAATCCAAGTTTAT 59.844 41.667 0.00 0.00 0.00 1.40
46 47 5.586243 TCTTTGCTTATATCTGCACAGAACC 59.414 40.000 13.10 0.00 41.24 3.62
50 51 7.856398 CAGAATTCTTTGCTTATATCTGCACAG 59.144 37.037 4.86 8.75 39.05 3.66
63 77 5.319453 TCCACATCTTCAGAATTCTTTGCT 58.681 37.500 4.86 0.00 0.00 3.91
193 207 7.868922 GGAACCCGTTTACAAATCTTACAAATT 59.131 33.333 0.00 0.00 0.00 1.82
195 209 6.320672 TGGAACCCGTTTACAAATCTTACAAA 59.679 34.615 0.00 0.00 0.00 2.83
199 213 6.151480 GGATTGGAACCCGTTTACAAATCTTA 59.849 38.462 0.00 0.00 0.00 2.10
200 214 5.047590 GGATTGGAACCCGTTTACAAATCTT 60.048 40.000 0.00 0.00 0.00 2.40
202 216 4.381185 GGGATTGGAACCCGTTTACAAATC 60.381 45.833 0.00 0.00 37.85 2.17
203 217 3.512329 GGGATTGGAACCCGTTTACAAAT 59.488 43.478 0.00 0.00 37.85 2.32
204 218 2.892215 GGGATTGGAACCCGTTTACAAA 59.108 45.455 0.00 0.00 37.85 2.83
205 219 2.516906 GGGATTGGAACCCGTTTACAA 58.483 47.619 0.00 0.00 37.85 2.41
214 228 1.064685 CAGGTACAGGGGATTGGAACC 60.065 57.143 0.00 0.00 0.00 3.62
215 229 1.064685 CCAGGTACAGGGGATTGGAAC 60.065 57.143 0.00 0.00 0.00 3.62
216 230 1.295020 CCAGGTACAGGGGATTGGAA 58.705 55.000 0.00 0.00 0.00 3.53
217 231 3.021356 CCAGGTACAGGGGATTGGA 57.979 57.895 0.00 0.00 0.00 3.53
225 239 3.071167 GCCTCTAATAACCCAGGTACAGG 59.929 52.174 0.00 0.00 33.40 4.00
226 240 3.709653 TGCCTCTAATAACCCAGGTACAG 59.290 47.826 0.00 0.00 0.00 2.74
227 241 3.726790 TGCCTCTAATAACCCAGGTACA 58.273 45.455 0.00 0.00 0.00 2.90
228 242 4.976540 ATGCCTCTAATAACCCAGGTAC 57.023 45.455 0.00 0.00 0.00 3.34
229 243 4.842380 GGTATGCCTCTAATAACCCAGGTA 59.158 45.833 0.00 0.00 0.00 3.08
230 244 3.651423 GGTATGCCTCTAATAACCCAGGT 59.349 47.826 0.00 0.00 0.00 4.00
231 245 3.910627 AGGTATGCCTCTAATAACCCAGG 59.089 47.826 0.00 0.00 42.67 4.45
232 246 6.017192 TCTAGGTATGCCTCTAATAACCCAG 58.983 44.000 5.27 0.00 45.64 4.45
412 545 2.047274 ACCATCGCCACTCAACCG 60.047 61.111 0.00 0.00 0.00 4.44
473 606 1.614413 GATTCGTCCCTATCCTCGCTT 59.386 52.381 0.00 0.00 0.00 4.68
512 666 2.037136 CCAGCTGAAACCCTCGCAG 61.037 63.158 17.39 0.00 0.00 5.18
703 869 1.133869 CGCGGTCAATTTTCGTCCC 59.866 57.895 0.00 0.00 0.00 4.46
723 889 2.167662 GGTCAATTTTCGTCCCACCAT 58.832 47.619 0.00 0.00 0.00 3.55
780 946 4.700213 ACGAAAAAGCAGCAAGGTATACAT 59.300 37.500 5.01 0.00 0.00 2.29
781 947 4.069304 ACGAAAAAGCAGCAAGGTATACA 58.931 39.130 5.01 0.00 0.00 2.29
782 948 4.153475 TGACGAAAAAGCAGCAAGGTATAC 59.847 41.667 0.00 0.00 0.00 1.47
783 949 4.320023 TGACGAAAAAGCAGCAAGGTATA 58.680 39.130 0.00 0.00 0.00 1.47
784 950 3.146066 TGACGAAAAAGCAGCAAGGTAT 58.854 40.909 0.00 0.00 0.00 2.73
785 951 2.566913 TGACGAAAAAGCAGCAAGGTA 58.433 42.857 0.00 0.00 0.00 3.08
786 952 1.388547 TGACGAAAAAGCAGCAAGGT 58.611 45.000 0.00 0.00 0.00 3.50
787 953 2.490328 TTGACGAAAAAGCAGCAAGG 57.510 45.000 0.00 0.00 0.00 3.61
788 954 6.509317 TTATTTTGACGAAAAAGCAGCAAG 57.491 33.333 0.00 0.00 41.00 4.01
789 955 8.581057 TTATTATTTTGACGAAAAAGCAGCAA 57.419 26.923 0.00 0.00 41.00 3.91
1192 1382 4.475135 GAGAGGAGGGTTGCGGCC 62.475 72.222 0.00 0.00 0.00 6.13
1577 1782 1.207089 CCCATAAGCCTGTCTTCGACA 59.793 52.381 0.00 0.00 40.50 4.35
1609 1814 2.654863 CTGGTGTGGAAGGAGTGTTTT 58.345 47.619 0.00 0.00 0.00 2.43
1610 1815 1.133792 CCTGGTGTGGAAGGAGTGTTT 60.134 52.381 0.00 0.00 35.40 2.83
1638 1843 3.279434 GGGAAAACTGATTACATCGGCT 58.721 45.455 0.00 0.00 39.30 5.52
1663 1869 3.815401 ACAGCAACATCTGTAGAAACCAC 59.185 43.478 0.00 0.00 44.77 4.16
1730 1942 4.409570 CAAATCAAACTCGAGAATGCCAG 58.590 43.478 21.68 1.61 0.00 4.85
1786 1998 1.130054 TTCCAGCAGCTGACCTCCTT 61.130 55.000 24.90 0.00 32.44 3.36
1849 2079 2.288395 GGGTGTTGCAGTTTGAATCTGG 60.288 50.000 5.51 0.00 33.98 3.86
1854 2084 1.846007 ACTGGGTGTTGCAGTTTGAA 58.154 45.000 0.00 0.00 0.00 2.69
1932 2963 6.498651 TCAGGGGAAGTATATTCTCCAGATTC 59.501 42.308 9.12 0.00 41.56 2.52
1933 2964 6.393897 TCAGGGGAAGTATATTCTCCAGATT 58.606 40.000 9.12 0.00 41.56 2.40
2003 3052 3.429543 CCACAGCAACAACACATTATTGC 59.570 43.478 0.00 0.00 46.21 3.56
2028 3077 2.295349 GACCACGAAGAGGCCGATAATA 59.705 50.000 0.00 0.00 43.95 0.98
2281 11978 4.467795 AGGACATAAGTACATGACACTGCT 59.532 41.667 0.00 0.00 0.00 4.24
2316 12029 1.553704 ACAATGAACGGAGGGAGTACC 59.446 52.381 0.00 0.00 40.67 3.34
2369 12082 4.109766 CGCTCATTTCAGTCCGTATGTAA 58.890 43.478 0.00 0.00 0.00 2.41
2390 12103 5.451908 AGATGCATTTTAGTGTGTTGTTCG 58.548 37.500 0.00 0.00 0.00 3.95
2438 12153 9.186323 CTCCGTTCACTATTATAAGATGTTCTG 57.814 37.037 0.00 0.00 0.00 3.02
2642 13272 4.117685 GGCGGGTAAGATAACACTTAGTG 58.882 47.826 11.21 11.21 39.75 2.74
2661 13293 6.072838 ACAATTCTTGCATCTATCAATAGGCG 60.073 38.462 0.00 0.00 0.00 5.52
2725 13357 4.097589 TGTTGTGCATCACATCAGTCAAAA 59.902 37.500 6.61 0.00 44.16 2.44
3020 13941 3.141398 GCTAAGGCATGTATAGCTGCAA 58.859 45.455 15.07 0.00 40.18 4.08
3049 13970 5.163353 TGTCACAAGTGAACATCCTGACTTA 60.163 40.000 4.20 0.00 41.85 2.24
3080 14846 3.372822 TGGTTTGAGAACAACAGAACGTC 59.627 43.478 0.00 0.00 37.51 4.34
3096 14862 9.289303 GTAAACATGCTATTTATCACTGGTTTG 57.711 33.333 0.00 0.00 0.00 2.93
3127 15635 4.571176 ACTCGTTTCTCTTTCAGTTTCACC 59.429 41.667 0.00 0.00 0.00 4.02
3261 15774 0.647410 CTGCAATGACACGATCGGAC 59.353 55.000 20.98 10.48 0.00 4.79
3268 15782 1.462283 CTCTCCAACTGCAATGACACG 59.538 52.381 0.85 0.00 0.00 4.49
3309 15823 5.122512 TGAAACAGGTTCGAACACAAAAA 57.877 34.783 28.24 6.62 39.30 1.94
3310 15824 4.768130 TGAAACAGGTTCGAACACAAAA 57.232 36.364 28.24 6.00 39.30 2.44
3368 15909 4.915158 AGCAACTAGTACTAATCGACCC 57.085 45.455 3.76 0.00 0.00 4.46
3486 16082 8.902540 TTAACTCTCATCTAAAAACAAGCTGA 57.097 30.769 0.00 0.00 0.00 4.26
3510 16106 4.561735 TCCGCTTTTCAACTCGAAATTT 57.438 36.364 0.00 0.00 43.12 1.82
3529 16252 1.679032 CGGATTTGGTGAGACCCTTCC 60.679 57.143 0.00 0.00 37.50 3.46
3700 16454 2.158623 ACCCAATCTTTCACAGTGCTCA 60.159 45.455 0.00 0.00 0.00 4.26
3721 16476 0.605319 CTAAAGCGAGGGTGTTGGCA 60.605 55.000 0.00 0.00 0.00 4.92
3759 16514 7.283329 GGAGGGAGTACTATTTTTGTGATGAT 58.717 38.462 0.00 0.00 0.00 2.45
3876 16631 6.387041 TTCCAATACAGACTACATACGGAG 57.613 41.667 0.00 0.00 0.00 4.63
3877 16632 6.776116 AGATTCCAATACAGACTACATACGGA 59.224 38.462 0.00 0.00 0.00 4.69
3878 16633 6.982852 AGATTCCAATACAGACTACATACGG 58.017 40.000 0.00 0.00 0.00 4.02
3879 16634 7.877003 AGAGATTCCAATACAGACTACATACG 58.123 38.462 0.00 0.00 0.00 3.06
3904 16659 4.718276 ACGGAGGGAGTATAAGCCTTTTTA 59.282 41.667 0.00 0.00 0.00 1.52
3916 16671 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
3917 16672 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
3918 16673 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3919 16674 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3920 16675 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3921 16676 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3922 16677 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
3923 16678 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
3924 16679 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
3925 16680 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
3926 16681 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
3932 16687 9.220767 GTGGAATCTCTACAAAGACTTACATTT 57.779 33.333 0.00 0.00 0.00 2.32
3933 16688 8.598041 AGTGGAATCTCTACAAAGACTTACATT 58.402 33.333 0.00 0.00 29.47 2.71
3934 16689 8.140112 AGTGGAATCTCTACAAAGACTTACAT 57.860 34.615 0.00 0.00 29.47 2.29
3935 16690 7.540474 AGTGGAATCTCTACAAAGACTTACA 57.460 36.000 0.00 0.00 29.47 2.41
3942 16697 8.821894 GCAGTTTATAGTGGAATCTCTACAAAG 58.178 37.037 0.00 0.00 29.47 2.77
3943 16698 8.318412 TGCAGTTTATAGTGGAATCTCTACAAA 58.682 33.333 0.00 0.00 29.47 2.83
3944 16699 7.847096 TGCAGTTTATAGTGGAATCTCTACAA 58.153 34.615 0.00 0.00 29.47 2.41
3945 16700 7.418337 TGCAGTTTATAGTGGAATCTCTACA 57.582 36.000 0.00 0.00 29.47 2.74
3946 16701 9.413048 GTATGCAGTTTATAGTGGAATCTCTAC 57.587 37.037 0.00 0.00 0.00 2.59
3947 16702 9.143155 TGTATGCAGTTTATAGTGGAATCTCTA 57.857 33.333 0.00 0.00 0.00 2.43
3948 16703 8.023021 TGTATGCAGTTTATAGTGGAATCTCT 57.977 34.615 0.00 0.00 0.00 3.10
3949 16704 8.144478 TCTGTATGCAGTTTATAGTGGAATCTC 58.856 37.037 10.80 0.00 43.05 2.75
3950 16705 8.023021 TCTGTATGCAGTTTATAGTGGAATCT 57.977 34.615 10.80 0.00 43.05 2.40
3951 16706 8.715998 CATCTGTATGCAGTTTATAGTGGAATC 58.284 37.037 10.80 0.00 43.05 2.52
3952 16707 8.213679 ACATCTGTATGCAGTTTATAGTGGAAT 58.786 33.333 10.80 0.00 43.05 3.01
3953 16708 7.564793 ACATCTGTATGCAGTTTATAGTGGAA 58.435 34.615 10.80 0.00 43.05 3.53
3954 16709 7.124573 ACATCTGTATGCAGTTTATAGTGGA 57.875 36.000 10.80 0.00 43.05 4.02
3962 16717 9.376075 GCATCTATATACATCTGTATGCAGTTT 57.624 33.333 10.80 0.00 41.03 2.66
3963 16718 8.534496 TGCATCTATATACATCTGTATGCAGTT 58.466 33.333 10.80 0.00 41.03 3.16
3964 16719 8.071177 TGCATCTATATACATCTGTATGCAGT 57.929 34.615 10.80 0.00 41.03 4.40
3965 16720 9.543783 AATGCATCTATATACATCTGTATGCAG 57.456 33.333 16.66 4.14 40.25 4.41
3966 16721 9.895138 AAATGCATCTATATACATCTGTATGCA 57.105 29.630 14.89 14.89 40.78 3.96
3993 16748 9.638239 GGTGCAAAATGAATGAATCTAAACTTA 57.362 29.630 0.00 0.00 0.00 2.24
3994 16749 7.329226 CGGTGCAAAATGAATGAATCTAAACTT 59.671 33.333 0.00 0.00 0.00 2.66
3995 16750 6.808212 CGGTGCAAAATGAATGAATCTAAACT 59.192 34.615 0.00 0.00 0.00 2.66
3996 16751 6.586082 ACGGTGCAAAATGAATGAATCTAAAC 59.414 34.615 0.00 0.00 0.00 2.01
3997 16752 6.686630 ACGGTGCAAAATGAATGAATCTAAA 58.313 32.000 0.00 0.00 0.00 1.85
3998 16753 6.266168 ACGGTGCAAAATGAATGAATCTAA 57.734 33.333 0.00 0.00 0.00 2.10
3999 16754 5.895636 ACGGTGCAAAATGAATGAATCTA 57.104 34.783 0.00 0.00 0.00 1.98
4000 16755 4.789012 ACGGTGCAAAATGAATGAATCT 57.211 36.364 0.00 0.00 0.00 2.40
4001 16756 6.035843 ACATACGGTGCAAAATGAATGAATC 58.964 36.000 0.00 0.00 0.00 2.52
4002 16757 5.964758 ACATACGGTGCAAAATGAATGAAT 58.035 33.333 0.00 0.00 0.00 2.57
4003 16758 5.384063 ACATACGGTGCAAAATGAATGAA 57.616 34.783 0.00 0.00 0.00 2.57
4004 16759 5.645929 ACTACATACGGTGCAAAATGAATGA 59.354 36.000 0.00 0.00 0.00 2.57
4005 16760 5.879237 ACTACATACGGTGCAAAATGAATG 58.121 37.500 0.00 0.00 0.00 2.67
4006 16761 5.065988 GGACTACATACGGTGCAAAATGAAT 59.934 40.000 0.00 0.00 0.00 2.57
4007 16762 4.393680 GGACTACATACGGTGCAAAATGAA 59.606 41.667 0.00 0.00 0.00 2.57
4008 16763 3.936453 GGACTACATACGGTGCAAAATGA 59.064 43.478 0.00 0.00 0.00 2.57
4009 16764 3.687212 TGGACTACATACGGTGCAAAATG 59.313 43.478 0.00 0.00 31.30 2.32
4010 16765 3.945346 TGGACTACATACGGTGCAAAAT 58.055 40.909 0.00 0.00 31.30 1.82
4011 16766 3.404224 TGGACTACATACGGTGCAAAA 57.596 42.857 0.00 0.00 31.30 2.44
4012 16767 3.196901 AGATGGACTACATACGGTGCAAA 59.803 43.478 0.00 0.00 40.72 3.68
4013 16768 2.764010 AGATGGACTACATACGGTGCAA 59.236 45.455 0.00 0.00 40.72 4.08
4014 16769 2.384828 AGATGGACTACATACGGTGCA 58.615 47.619 0.00 0.00 40.72 4.57
4015 16770 3.568853 ACTAGATGGACTACATACGGTGC 59.431 47.826 0.00 0.00 40.72 5.01
4016 16771 4.820173 TCACTAGATGGACTACATACGGTG 59.180 45.833 0.00 0.00 40.72 4.94
4017 16772 5.045012 TCACTAGATGGACTACATACGGT 57.955 43.478 0.00 0.00 40.72 4.83
4018 16773 6.387041 TTTCACTAGATGGACTACATACGG 57.613 41.667 0.00 0.00 40.72 4.02
4019 16774 7.877003 AGATTTCACTAGATGGACTACATACG 58.123 38.462 0.00 0.00 40.72 3.06
4020 16775 9.073475 AGAGATTTCACTAGATGGACTACATAC 57.927 37.037 0.00 0.00 40.72 2.39
4022 16777 9.647918 TTAGAGATTTCACTAGATGGACTACAT 57.352 33.333 0.00 0.00 44.18 2.29
4023 16778 9.475620 TTTAGAGATTTCACTAGATGGACTACA 57.524 33.333 0.00 0.00 0.00 2.74
4026 16781 9.883142 CTTTTTAGAGATTTCACTAGATGGACT 57.117 33.333 0.00 0.00 0.00 3.85
4027 16782 9.877178 TCTTTTTAGAGATTTCACTAGATGGAC 57.123 33.333 0.00 0.00 0.00 4.02
4028 16783 9.877178 GTCTTTTTAGAGATTTCACTAGATGGA 57.123 33.333 0.00 0.00 0.00 3.41
4029 16784 9.883142 AGTCTTTTTAGAGATTTCACTAGATGG 57.117 33.333 0.00 0.00 0.00 3.51
4047 16802 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4048 16803 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4049 16804 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4050 16805 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4051 16806 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4052 16807 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4053 16808 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4054 16809 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4055 16810 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
4056 16811 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
4057 16812 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4058 16813 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4059 16814 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4060 16815 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4061 16816 4.803329 ATACTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
4062 16817 4.803329 AATACTACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
4063 16818 3.684408 AATACTACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
4064 16819 4.280425 CCTAAATACTACTCCCTCCGTTCC 59.720 50.000 0.00 0.00 0.00 3.62
4065 16820 5.136105 TCCTAAATACTACTCCCTCCGTTC 58.864 45.833 0.00 0.00 0.00 3.95
4066 16821 5.134725 TCCTAAATACTACTCCCTCCGTT 57.865 43.478 0.00 0.00 0.00 4.44
4067 16822 4.803329 TCCTAAATACTACTCCCTCCGT 57.197 45.455 0.00 0.00 0.00 4.69
4068 16823 4.523558 CCTTCCTAAATACTACTCCCTCCG 59.476 50.000 0.00 0.00 0.00 4.63
4069 16824 4.839550 CCCTTCCTAAATACTACTCCCTCC 59.160 50.000 0.00 0.00 0.00 4.30
4070 16825 5.713807 TCCCTTCCTAAATACTACTCCCTC 58.286 45.833 0.00 0.00 0.00 4.30
4071 16826 5.401587 CCTCCCTTCCTAAATACTACTCCCT 60.402 48.000 0.00 0.00 0.00 4.20
4072 16827 4.839550 CCTCCCTTCCTAAATACTACTCCC 59.160 50.000 0.00 0.00 0.00 4.30
4073 16828 4.839550 CCCTCCCTTCCTAAATACTACTCC 59.160 50.000 0.00 0.00 0.00 3.85
4074 16829 5.713807 TCCCTCCCTTCCTAAATACTACTC 58.286 45.833 0.00 0.00 0.00 2.59
4075 16830 5.198219 ACTCCCTCCCTTCCTAAATACTACT 59.802 44.000 0.00 0.00 0.00 2.57
4076 16831 5.465901 ACTCCCTCCCTTCCTAAATACTAC 58.534 45.833 0.00 0.00 0.00 2.73
4090 16845 1.148236 AGCTACCTCATACTCCCTCCC 59.852 57.143 0.00 0.00 0.00 4.30
4094 16849 1.414158 TGCAGCTACCTCATACTCCC 58.586 55.000 0.00 0.00 0.00 4.30
4181 16936 6.284891 ACCCATTTCATATTTCAGTTGGTG 57.715 37.500 0.00 0.00 0.00 4.17
4196 16951 3.197983 ACACCTAGTGAGCTACCCATTTC 59.802 47.826 0.96 0.00 36.96 2.17
4854 17945 6.579666 TTCTGCAAGCATAAGAAGTCAAAT 57.420 33.333 0.00 0.00 0.00 2.32
4906 17999 7.509141 TCTTATGTCTTGTGCAAAAGATCAA 57.491 32.000 22.04 14.35 38.41 2.57
4979 18074 9.212641 GATAACACATACATGCAGAAGATATGT 57.787 33.333 0.00 0.00 37.02 2.29
5024 18140 2.774439 ACAAAAGGCAAAGCAGTACG 57.226 45.000 0.00 0.00 0.00 3.67
5155 18359 7.037586 AACTTTGGGAGTATGGAGACAAGATTA 60.038 37.037 0.00 0.00 40.61 1.75
5162 18366 3.519913 AGGAACTTTGGGAGTATGGAGAC 59.480 47.826 0.00 0.00 37.72 3.36
5176 18380 3.074538 ACTCATTACCCAGCAGGAACTTT 59.925 43.478 0.00 0.00 34.60 2.66
5190 18394 3.875125 GGGAGAAGAACCCACTCATTAC 58.125 50.000 0.00 0.00 46.05 1.89
5203 18407 0.558712 GAGGGGCTAGAGGGAGAAGA 59.441 60.000 0.00 0.00 0.00 2.87
5204 18408 0.471022 GGAGGGGCTAGAGGGAGAAG 60.471 65.000 0.00 0.00 0.00 2.85
5205 18409 1.228920 TGGAGGGGCTAGAGGGAGAA 61.229 60.000 0.00 0.00 0.00 2.87
5206 18410 1.625879 TGGAGGGGCTAGAGGGAGA 60.626 63.158 0.00 0.00 0.00 3.71
5208 18412 1.941820 ACTGGAGGGGCTAGAGGGA 60.942 63.158 0.00 0.00 0.00 4.20
5209 18413 1.764054 CACTGGAGGGGCTAGAGGG 60.764 68.421 0.00 0.00 0.00 4.30
5210 18414 0.105246 ATCACTGGAGGGGCTAGAGG 60.105 60.000 0.00 0.00 0.00 3.69
5211 18415 1.415659 CAATCACTGGAGGGGCTAGAG 59.584 57.143 0.00 0.00 0.00 2.43
5213 18417 1.500474 TCAATCACTGGAGGGGCTAG 58.500 55.000 0.00 0.00 0.00 3.42
5214 18418 1.770658 CATCAATCACTGGAGGGGCTA 59.229 52.381 0.00 0.00 0.00 3.93
5220 18919 5.295950 GTCCTGTATCATCAATCACTGGAG 58.704 45.833 0.00 0.00 38.99 3.86
5224 18923 5.965033 AAGGTCCTGTATCATCAATCACT 57.035 39.130 0.00 0.00 0.00 3.41
5245 18947 1.075601 ACAGGCAGGGAATGAGGAAA 58.924 50.000 0.00 0.00 0.00 3.13
5248 18950 2.806945 TAAACAGGCAGGGAATGAGG 57.193 50.000 0.00 0.00 0.00 3.86
5250 18952 2.291475 TGCATAAACAGGCAGGGAATGA 60.291 45.455 0.00 0.00 34.58 2.57
5251 18953 2.101783 TGCATAAACAGGCAGGGAATG 58.898 47.619 0.00 0.00 34.58 2.67
5252 18954 2.530460 TGCATAAACAGGCAGGGAAT 57.470 45.000 0.00 0.00 34.58 3.01
5253 18955 2.530460 ATGCATAAACAGGCAGGGAA 57.470 45.000 0.00 0.00 44.24 3.97
5257 18959 6.035220 CACAAAACATATGCATAAACAGGCAG 59.965 38.462 11.13 0.25 44.24 4.85
5259 18961 5.220453 GCACAAAACATATGCATAAACAGGC 60.220 40.000 11.13 4.14 39.23 4.85
5275 18977 1.597742 TCTCTGAGCAGGCACAAAAC 58.402 50.000 0.00 0.00 0.00 2.43
5276 18978 2.574006 ATCTCTGAGCAGGCACAAAA 57.426 45.000 0.00 0.00 0.00 2.44
5333 20393 1.079438 AGGAGAGGCGAGAGGGTTT 59.921 57.895 0.00 0.00 0.00 3.27
5342 20402 1.447489 CAGAAGCACAGGAGAGGCG 60.447 63.158 0.00 0.00 0.00 5.52
5343 20403 1.744741 GCAGAAGCACAGGAGAGGC 60.745 63.158 0.00 0.00 41.58 4.70
5344 20404 1.447489 CGCAGAAGCACAGGAGAGG 60.447 63.158 0.00 0.00 42.27 3.69
5345 20405 0.175302 ATCGCAGAAGCACAGGAGAG 59.825 55.000 0.00 0.00 43.58 3.20
5346 20406 0.610174 AATCGCAGAAGCACAGGAGA 59.390 50.000 0.00 0.00 43.58 3.71
5347 20407 1.446907 AAATCGCAGAAGCACAGGAG 58.553 50.000 0.00 0.00 43.58 3.69
5348 20408 2.760634 TAAATCGCAGAAGCACAGGA 57.239 45.000 0.00 0.00 43.58 3.86
5349 20409 4.095483 AGAAATAAATCGCAGAAGCACAGG 59.905 41.667 0.00 0.00 43.58 4.00
5365 20425 9.872757 CAACGAGTAAAAGTAAAGCAGAAATAA 57.127 29.630 0.00 0.00 0.00 1.40
5438 20498 6.294731 GGACAACATTCAAAGCAAACTAGGAT 60.295 38.462 0.00 0.00 0.00 3.24
5449 20509 4.062293 TGTAGACGGGACAACATTCAAAG 58.938 43.478 0.00 0.00 0.00 2.77
5492 20552 7.039313 ACTTTCAAACCAAATTCTCAGGTAC 57.961 36.000 0.00 0.00 34.63 3.34
5550 20610 4.191033 TCCAAAATAAGCAGCAACATGG 57.809 40.909 0.00 0.00 0.00 3.66
5784 20853 7.115236 CACACAAAGCATACTACGTACAGTTTA 59.885 37.037 0.00 0.00 0.00 2.01
5790 20870 4.487948 TCCACACAAAGCATACTACGTAC 58.512 43.478 0.00 0.00 0.00 3.67
5793 20873 3.585862 ACTCCACACAAAGCATACTACG 58.414 45.455 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.