Multiple sequence alignment - TraesCS6B01G103500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G103500 chr6B 100.000 2732 0 0 1 2732 81980614 81983345 0.000000e+00 5046
1 TraesCS6B01G103500 chr7D 89.603 2193 181 19 1 2166 432740992 432738820 0.000000e+00 2743
2 TraesCS6B01G103500 chr7D 90.830 229 6 4 1951 2164 182493704 182493932 2.660000e-75 292
3 TraesCS6B01G103500 chr5B 89.447 2151 177 25 1 2134 407222105 407224222 0.000000e+00 2669
4 TraesCS6B01G103500 chr5B 88.895 1873 172 20 311 2160 410845918 410847777 0.000000e+00 2274
5 TraesCS6B01G103500 chr5B 89.731 1782 141 14 410 2164 375712287 375710521 0.000000e+00 2239
6 TraesCS6B01G103500 chr5B 88.814 1332 123 9 1 1321 565795562 565796878 0.000000e+00 1611
7 TraesCS6B01G103500 chr5B 96.233 292 11 0 2441 2732 322442925 322442634 1.900000e-131 479
8 TraesCS6B01G103500 chr5A 89.113 2186 179 27 6 2162 604232495 604230340 0.000000e+00 2663
9 TraesCS6B01G103500 chr5A 86.399 1169 122 17 16 1161 364975029 364973875 0.000000e+00 1243
10 TraesCS6B01G103500 chr5A 94.539 293 15 1 2440 2732 310715810 310716101 4.150000e-123 451
11 TraesCS6B01G103500 chr4D 88.828 2202 172 23 4 2160 421049090 421046918 0.000000e+00 2636
12 TraesCS6B01G103500 chr4D 88.393 2197 185 26 1 2159 48684382 48682218 0.000000e+00 2580
13 TraesCS6B01G103500 chr4D 88.286 2194 171 28 1 2166 116524972 116522837 0.000000e+00 2549
14 TraesCS6B01G103500 chr3B 88.680 2182 211 14 1 2166 478551404 478549243 0.000000e+00 2628
15 TraesCS6B01G103500 chr3B 95.904 293 10 2 2441 2732 21504448 21504157 8.850000e-130 473
16 TraesCS6B01G103500 chr3B 94.719 303 15 1 2430 2732 126662762 126662461 1.150000e-128 470
17 TraesCS6B01G103500 chr3B 94.881 293 12 1 2440 2732 796845040 796845329 3.210000e-124 455
18 TraesCS6B01G103500 chr3B 94.539 293 15 1 2440 2732 792739701 792739992 4.150000e-123 451
19 TraesCS6B01G103500 chr3A 88.930 2186 165 29 6 2163 418766073 418763937 0.000000e+00 2625
20 TraesCS6B01G103500 chr7B 88.027 2205 199 25 1 2164 150841650 150843830 0.000000e+00 2549
21 TraesCS6B01G103500 chr7B 87.563 2195 214 21 3 2166 238000703 238002869 0.000000e+00 2486
22 TraesCS6B01G103500 chr7B 96.233 292 11 0 2441 2732 589047111 589046820 1.900000e-131 479
23 TraesCS6B01G103500 chr1A 88.469 2116 192 18 77 2164 387994827 387996918 0.000000e+00 2508
24 TraesCS6B01G103500 chr2D 89.011 1729 163 9 6 1716 487337612 487335893 0.000000e+00 2115
25 TraesCS6B01G103500 chr7A 84.208 2210 242 38 13 2166 221704501 221706659 0.000000e+00 2049
26 TraesCS6B01G103500 chr2A 84.277 1908 221 28 1 1875 186587880 186589741 0.000000e+00 1788
27 TraesCS6B01G103500 chr1D 88.970 1378 130 6 2 1368 338633137 338634503 0.000000e+00 1683
28 TraesCS6B01G103500 chr1B 97.945 292 6 0 2441 2732 152017131 152016840 8.730000e-140 507
29 TraesCS6B01G103500 chr1B 97.611 293 7 0 2440 2732 301088421 301088129 1.130000e-138 503
30 TraesCS6B01G103500 chr3D 95.122 123 5 1 2044 2166 613583024 613583145 2.780000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G103500 chr6B 81980614 81983345 2731 False 5046 5046 100.000 1 2732 1 chr6B.!!$F1 2731
1 TraesCS6B01G103500 chr7D 432738820 432740992 2172 True 2743 2743 89.603 1 2166 1 chr7D.!!$R1 2165
2 TraesCS6B01G103500 chr5B 407222105 407224222 2117 False 2669 2669 89.447 1 2134 1 chr5B.!!$F1 2133
3 TraesCS6B01G103500 chr5B 410845918 410847777 1859 False 2274 2274 88.895 311 2160 1 chr5B.!!$F2 1849
4 TraesCS6B01G103500 chr5B 375710521 375712287 1766 True 2239 2239 89.731 410 2164 1 chr5B.!!$R2 1754
5 TraesCS6B01G103500 chr5B 565795562 565796878 1316 False 1611 1611 88.814 1 1321 1 chr5B.!!$F3 1320
6 TraesCS6B01G103500 chr5A 604230340 604232495 2155 True 2663 2663 89.113 6 2162 1 chr5A.!!$R2 2156
7 TraesCS6B01G103500 chr5A 364973875 364975029 1154 True 1243 1243 86.399 16 1161 1 chr5A.!!$R1 1145
8 TraesCS6B01G103500 chr4D 421046918 421049090 2172 True 2636 2636 88.828 4 2160 1 chr4D.!!$R3 2156
9 TraesCS6B01G103500 chr4D 48682218 48684382 2164 True 2580 2580 88.393 1 2159 1 chr4D.!!$R1 2158
10 TraesCS6B01G103500 chr4D 116522837 116524972 2135 True 2549 2549 88.286 1 2166 1 chr4D.!!$R2 2165
11 TraesCS6B01G103500 chr3B 478549243 478551404 2161 True 2628 2628 88.680 1 2166 1 chr3B.!!$R3 2165
12 TraesCS6B01G103500 chr3A 418763937 418766073 2136 True 2625 2625 88.930 6 2163 1 chr3A.!!$R1 2157
13 TraesCS6B01G103500 chr7B 150841650 150843830 2180 False 2549 2549 88.027 1 2164 1 chr7B.!!$F1 2163
14 TraesCS6B01G103500 chr7B 238000703 238002869 2166 False 2486 2486 87.563 3 2166 1 chr7B.!!$F2 2163
15 TraesCS6B01G103500 chr1A 387994827 387996918 2091 False 2508 2508 88.469 77 2164 1 chr1A.!!$F1 2087
16 TraesCS6B01G103500 chr2D 487335893 487337612 1719 True 2115 2115 89.011 6 1716 1 chr2D.!!$R1 1710
17 TraesCS6B01G103500 chr7A 221704501 221706659 2158 False 2049 2049 84.208 13 2166 1 chr7A.!!$F1 2153
18 TraesCS6B01G103500 chr2A 186587880 186589741 1861 False 1788 1788 84.277 1 1875 1 chr2A.!!$F1 1874
19 TraesCS6B01G103500 chr1D 338633137 338634503 1366 False 1683 1683 88.970 2 1368 1 chr1D.!!$F1 1366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 161 0.176680 GCGGATCAGAGGAGAGCAAA 59.823 55.0 0.00 0.0 0.0 3.68 F
939 1089 0.321564 CAGCCGACCACATGAGGAAA 60.322 55.0 16.78 0.0 0.0 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 1827 0.107508 CCACCTCAATGCCATCGTCT 60.108 55.0 0.0 0.0 0.0 4.18 R
2171 2401 0.249868 TGTGCTTGTCCTCGTCTTGG 60.250 55.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.421479 CGGCCACGCTCGAGAAGT 62.421 66.667 18.75 12.50 0.00 3.01
107 118 0.348370 ATCTCCCAACTCTCCCCCAT 59.652 55.000 0.00 0.00 0.00 4.00
150 161 0.176680 GCGGATCAGAGGAGAGCAAA 59.823 55.000 0.00 0.00 0.00 3.68
158 169 3.328931 TCAGAGGAGAGCAAAAAGACCAT 59.671 43.478 0.00 0.00 0.00 3.55
173 184 0.325671 ACCATCGGACTCCATCACCT 60.326 55.000 0.00 0.00 0.00 4.00
354 467 8.221965 TCATACGAGTTCATACTAGTTCATGT 57.778 34.615 0.00 0.00 40.22 3.21
377 492 7.232188 TGTAAGATCGGAATAGAGGTAGATGT 58.768 38.462 0.00 0.00 0.00 3.06
383 498 4.524714 CGGAATAGAGGTAGATGTGGATGT 59.475 45.833 0.00 0.00 0.00 3.06
404 534 0.328158 GTAGAAGGGGGATTGGGGGA 60.328 60.000 0.00 0.00 0.00 4.81
500 630 1.374125 CTTGTCCATCGCCGTGTGA 60.374 57.895 0.00 0.00 0.00 3.58
553 689 0.981183 AGGTCGATTTGCCAGGTACA 59.019 50.000 0.00 0.00 0.00 2.90
563 699 2.747686 CAGGTACAACGGCCTGGT 59.252 61.111 0.00 0.00 46.27 4.00
741 878 3.837578 GTCGTCGGAGATGGCCTA 58.162 61.111 3.32 0.00 43.32 3.93
853 992 3.198417 TGAGCACTGCATCAGATTCCTTA 59.802 43.478 3.30 0.00 35.18 2.69
855 994 4.135306 AGCACTGCATCAGATTCCTTATG 58.865 43.478 3.30 0.00 35.18 1.90
856 995 3.304525 GCACTGCATCAGATTCCTTATGC 60.305 47.826 0.29 0.00 45.56 3.14
861 1000 5.044428 GCATCAGATTCCTTATGCATGTC 57.956 43.478 10.16 0.00 45.01 3.06
862 1001 4.517832 GCATCAGATTCCTTATGCATGTCA 59.482 41.667 10.16 0.00 45.01 3.58
863 1002 5.334957 GCATCAGATTCCTTATGCATGTCAG 60.335 44.000 10.16 2.36 45.01 3.51
939 1089 0.321564 CAGCCGACCACATGAGGAAA 60.322 55.000 16.78 0.00 0.00 3.13
1086 1236 2.969950 AGGGTGAGTAAATATAGGCGCA 59.030 45.455 10.83 0.00 0.00 6.09
1138 1292 8.032952 TGTCATTTTAACTACATGCTCTTCAG 57.967 34.615 0.00 0.00 0.00 3.02
1161 1315 4.931601 GCAAGTCATGAACTCTGTGATGTA 59.068 41.667 0.00 0.00 37.17 2.29
1175 1329 5.301298 TCTGTGATGTATCTGACTCCATGAG 59.699 44.000 0.00 0.00 35.52 2.90
1233 1387 2.124151 GTGCTCCCGGCCATTGAT 60.124 61.111 2.24 0.00 40.92 2.57
1357 1519 3.875510 GAGCCCCCAAGCAGCAAGT 62.876 63.158 0.00 0.00 34.23 3.16
1376 1538 0.391130 TGCCGCAACTATGACCACTC 60.391 55.000 0.00 0.00 0.00 3.51
1429 1591 0.321653 GGTCATCCTTGCACCGAAGT 60.322 55.000 0.00 0.00 0.00 3.01
1472 1634 1.540363 GGACTTCACCAAGCACTTCGA 60.540 52.381 0.00 0.00 32.09 3.71
1665 1827 3.118629 CCCTCAAGGTCATCATCTTCGAA 60.119 47.826 0.00 0.00 0.00 3.71
1718 1880 1.537202 GAAGCACGATGAAGCCTTTGT 59.463 47.619 0.00 0.00 0.00 2.83
1728 1890 2.282180 GCCTTTGTCGCCAGGGAA 60.282 61.111 0.00 0.00 0.00 3.97
1769 1931 6.888632 TCCTTCCTAAGTACTATCGAGTTTGT 59.111 38.462 0.00 0.00 37.10 2.83
1814 2001 8.186178 ACTGTTTGAACTATCGTTATGATGTC 57.814 34.615 0.00 0.00 37.99 3.06
1824 2011 5.762825 TCGTTATGATGTCTGGTACTACC 57.237 43.478 0.00 0.00 39.22 3.18
1825 2012 5.831525 ATCGTTATGATGTCTGGTACTACCA 59.168 40.000 7.73 7.73 40.28 3.25
1826 2013 6.493802 ATCGTTATGATGTCTGGTACTACCAT 59.506 38.462 8.45 0.00 41.17 3.55
1827 2014 7.015292 ATCGTTATGATGTCTGGTACTACCATT 59.985 37.037 8.45 0.00 41.17 3.16
1943 2156 2.271944 AACCTCACCAACTAGCCAAC 57.728 50.000 0.00 0.00 0.00 3.77
1992 2205 1.411977 CAACCAAACACCATGCCTTGA 59.588 47.619 0.00 0.00 0.00 3.02
2058 2273 2.658422 CCCATGCAGGCAACCAAC 59.342 61.111 0.00 0.00 35.39 3.77
2105 2335 1.817881 GCATTTGCATAGCCAGGCA 59.182 52.632 15.80 0.00 40.27 4.75
2166 2396 1.074248 AACCAAACACGCCCCTAGG 59.926 57.895 0.06 0.06 0.00 3.02
2176 2406 2.692368 CCCCTAGGCAGCCCAAGA 60.692 66.667 8.22 0.00 0.00 3.02
2177 2407 2.592308 CCCTAGGCAGCCCAAGAC 59.408 66.667 8.22 0.00 0.00 3.01
2178 2408 2.187946 CCTAGGCAGCCCAAGACG 59.812 66.667 8.22 0.00 0.00 4.18
2179 2409 2.359169 CCTAGGCAGCCCAAGACGA 61.359 63.158 8.22 0.00 0.00 4.20
2180 2410 1.142748 CTAGGCAGCCCAAGACGAG 59.857 63.158 8.22 0.00 0.00 4.18
2181 2411 2.303549 CTAGGCAGCCCAAGACGAGG 62.304 65.000 8.22 0.00 0.00 4.63
2182 2412 2.798445 TAGGCAGCCCAAGACGAGGA 62.798 60.000 8.22 0.00 0.00 3.71
2183 2413 2.435059 GCAGCCCAAGACGAGGAC 60.435 66.667 0.00 0.00 0.00 3.85
2184 2414 3.059982 CAGCCCAAGACGAGGACA 58.940 61.111 0.00 0.00 0.00 4.02
2185 2415 1.371183 CAGCCCAAGACGAGGACAA 59.629 57.895 0.00 0.00 0.00 3.18
2186 2416 0.671781 CAGCCCAAGACGAGGACAAG 60.672 60.000 0.00 0.00 0.00 3.16
2187 2417 2.035442 GCCCAAGACGAGGACAAGC 61.035 63.158 0.00 0.00 0.00 4.01
2188 2418 1.371183 CCCAAGACGAGGACAAGCA 59.629 57.895 0.00 0.00 0.00 3.91
2189 2419 0.951040 CCCAAGACGAGGACAAGCAC 60.951 60.000 0.00 0.00 0.00 4.40
2190 2420 0.249868 CCAAGACGAGGACAAGCACA 60.250 55.000 0.00 0.00 0.00 4.57
2191 2421 0.861837 CAAGACGAGGACAAGCACAC 59.138 55.000 0.00 0.00 0.00 3.82
2192 2422 0.597637 AAGACGAGGACAAGCACACG 60.598 55.000 0.00 0.00 0.00 4.49
2193 2423 2.658707 GACGAGGACAAGCACACGC 61.659 63.158 0.00 0.00 38.99 5.34
2194 2424 3.767230 CGAGGACAAGCACACGCG 61.767 66.667 3.53 3.53 45.49 6.01
2195 2425 2.661866 GAGGACAAGCACACGCGT 60.662 61.111 5.58 5.58 45.49 6.01
2196 2426 2.203015 AGGACAAGCACACGCGTT 60.203 55.556 10.22 0.00 45.49 4.84
2197 2427 2.052237 GGACAAGCACACGCGTTG 60.052 61.111 10.22 13.03 45.49 4.10
2198 2428 2.530497 GGACAAGCACACGCGTTGA 61.530 57.895 10.22 0.00 45.49 3.18
2199 2429 1.350319 GACAAGCACACGCGTTGAA 59.650 52.632 10.22 0.00 45.49 2.69
2200 2430 0.923911 GACAAGCACACGCGTTGAAC 60.924 55.000 10.22 0.00 45.49 3.18
2201 2431 1.061729 CAAGCACACGCGTTGAACA 59.938 52.632 10.22 0.00 45.49 3.18
2202 2432 1.061887 AAGCACACGCGTTGAACAC 59.938 52.632 10.22 0.00 45.49 3.32
2203 2433 1.640210 AAGCACACGCGTTGAACACA 61.640 50.000 10.22 0.00 45.49 3.72
2204 2434 1.932564 GCACACGCGTTGAACACAC 60.933 57.895 10.22 0.00 0.00 3.82
2205 2435 1.297304 CACACGCGTTGAACACACC 60.297 57.895 10.22 0.00 0.00 4.16
2206 2436 1.742140 ACACGCGTTGAACACACCA 60.742 52.632 10.22 0.00 0.00 4.17
2207 2437 1.011242 CACGCGTTGAACACACCAG 60.011 57.895 10.22 0.00 0.00 4.00
2208 2438 2.177580 ACGCGTTGAACACACCAGG 61.178 57.895 5.58 0.00 0.00 4.45
2209 2439 2.331451 GCGTTGAACACACCAGGC 59.669 61.111 0.00 0.00 0.00 4.85
2210 2440 3.030652 CGTTGAACACACCAGGCC 58.969 61.111 0.00 0.00 0.00 5.19
2211 2441 2.551912 CGTTGAACACACCAGGCCC 61.552 63.158 0.00 0.00 0.00 5.80
2212 2442 1.454847 GTTGAACACACCAGGCCCA 60.455 57.895 0.00 0.00 0.00 5.36
2213 2443 1.454847 TTGAACACACCAGGCCCAC 60.455 57.895 0.00 0.00 0.00 4.61
2214 2444 2.978010 GAACACACCAGGCCCACG 60.978 66.667 0.00 0.00 0.00 4.94
2215 2445 4.579384 AACACACCAGGCCCACGG 62.579 66.667 0.00 0.00 0.00 4.94
2234 2464 4.651585 GCAACCAGCGCAATCAAA 57.348 50.000 11.47 0.00 0.00 2.69
2235 2465 2.144362 GCAACCAGCGCAATCAAAC 58.856 52.632 11.47 0.00 0.00 2.93
2236 2466 0.597118 GCAACCAGCGCAATCAAACA 60.597 50.000 11.47 0.00 0.00 2.83
2237 2467 1.850377 CAACCAGCGCAATCAAACAA 58.150 45.000 11.47 0.00 0.00 2.83
2238 2468 2.200067 CAACCAGCGCAATCAAACAAA 58.800 42.857 11.47 0.00 0.00 2.83
2239 2469 2.593346 ACCAGCGCAATCAAACAAAA 57.407 40.000 11.47 0.00 0.00 2.44
2240 2470 3.110447 ACCAGCGCAATCAAACAAAAT 57.890 38.095 11.47 0.00 0.00 1.82
2241 2471 3.465871 ACCAGCGCAATCAAACAAAATT 58.534 36.364 11.47 0.00 0.00 1.82
2242 2472 3.876320 ACCAGCGCAATCAAACAAAATTT 59.124 34.783 11.47 0.00 0.00 1.82
2243 2473 4.024977 ACCAGCGCAATCAAACAAAATTTC 60.025 37.500 11.47 0.00 0.00 2.17
2244 2474 4.025061 CCAGCGCAATCAAACAAAATTTCA 60.025 37.500 11.47 0.00 0.00 2.69
2245 2475 5.499935 CAGCGCAATCAAACAAAATTTCAA 58.500 33.333 11.47 0.00 0.00 2.69
2246 2476 5.393163 CAGCGCAATCAAACAAAATTTCAAC 59.607 36.000 11.47 0.00 0.00 3.18
2247 2477 4.372522 GCGCAATCAAACAAAATTTCAACG 59.627 37.500 0.30 0.00 0.00 4.10
2248 2478 4.372522 CGCAATCAAACAAAATTTCAACGC 59.627 37.500 0.00 0.00 0.00 4.84
2249 2479 5.261661 GCAATCAAACAAAATTTCAACGCA 58.738 33.333 0.00 0.00 0.00 5.24
2250 2480 5.908499 GCAATCAAACAAAATTTCAACGCAT 59.092 32.000 0.00 0.00 0.00 4.73
2251 2481 7.068341 GCAATCAAACAAAATTTCAACGCATA 58.932 30.769 0.00 0.00 0.00 3.14
2252 2482 7.745594 GCAATCAAACAAAATTTCAACGCATAT 59.254 29.630 0.00 0.00 0.00 1.78
2299 2529 9.906660 TGATTTATTTTCAGAAATGTTTAGCGT 57.093 25.926 0.00 0.00 36.22 5.07
2305 2535 8.500837 TTTTCAGAAATGTTTAGCGTACATTG 57.499 30.769 12.65 4.62 43.44 2.82
2306 2536 7.428282 TTCAGAAATGTTTAGCGTACATTGA 57.572 32.000 12.65 6.37 43.44 2.57
2307 2537 7.428282 TCAGAAATGTTTAGCGTACATTGAA 57.572 32.000 12.65 0.85 43.44 2.69
2308 2538 7.866729 TCAGAAATGTTTAGCGTACATTGAAA 58.133 30.769 12.65 1.10 43.44 2.69
2309 2539 8.511321 TCAGAAATGTTTAGCGTACATTGAAAT 58.489 29.630 12.65 0.98 43.44 2.17
2310 2540 9.128107 CAGAAATGTTTAGCGTACATTGAAATT 57.872 29.630 12.65 0.69 43.44 1.82
2311 2541 9.691362 AGAAATGTTTAGCGTACATTGAAATTT 57.309 25.926 12.65 0.00 43.44 1.82
2316 2546 9.953697 TGTTTAGCGTACATTGAAATTTTTAGT 57.046 25.926 0.00 0.00 0.00 2.24
2318 2548 9.953697 TTTAGCGTACATTGAAATTTTTAGTGT 57.046 25.926 7.14 7.14 0.00 3.55
2319 2549 7.851822 AGCGTACATTGAAATTTTTAGTGTG 57.148 32.000 10.91 0.00 0.00 3.82
2320 2550 6.861055 AGCGTACATTGAAATTTTTAGTGTGG 59.139 34.615 10.91 5.63 0.00 4.17
2321 2551 6.858993 GCGTACATTGAAATTTTTAGTGTGGA 59.141 34.615 10.91 0.00 0.00 4.02
2322 2552 7.540745 GCGTACATTGAAATTTTTAGTGTGGAT 59.459 33.333 10.91 0.00 0.00 3.41
2323 2553 9.405587 CGTACATTGAAATTTTTAGTGTGGATT 57.594 29.630 10.91 0.00 0.00 3.01
2326 2556 9.612066 ACATTGAAATTTTTAGTGTGGATTTGT 57.388 25.926 1.99 0.00 0.00 2.83
2327 2557 9.866936 CATTGAAATTTTTAGTGTGGATTTGTG 57.133 29.630 0.00 0.00 0.00 3.33
2328 2558 9.829507 ATTGAAATTTTTAGTGTGGATTTGTGA 57.170 25.926 0.00 0.00 0.00 3.58
2329 2559 9.658799 TTGAAATTTTTAGTGTGGATTTGTGAA 57.341 25.926 0.00 0.00 0.00 3.18
2330 2560 9.658799 TGAAATTTTTAGTGTGGATTTGTGAAA 57.341 25.926 0.00 0.00 0.00 2.69
2332 2562 8.661352 AATTTTTAGTGTGGATTTGTGAAAGG 57.339 30.769 0.00 0.00 0.00 3.11
2333 2563 6.783708 TTTTAGTGTGGATTTGTGAAAGGT 57.216 33.333 0.00 0.00 0.00 3.50
2334 2564 7.883391 TTTTAGTGTGGATTTGTGAAAGGTA 57.117 32.000 0.00 0.00 0.00 3.08
2335 2565 8.472007 TTTTAGTGTGGATTTGTGAAAGGTAT 57.528 30.769 0.00 0.00 0.00 2.73
2336 2566 9.575868 TTTTAGTGTGGATTTGTGAAAGGTATA 57.424 29.630 0.00 0.00 0.00 1.47
2337 2567 8.556213 TTAGTGTGGATTTGTGAAAGGTATAC 57.444 34.615 0.00 0.00 0.00 1.47
2338 2568 5.944007 AGTGTGGATTTGTGAAAGGTATACC 59.056 40.000 14.54 14.54 0.00 2.73
2339 2569 4.938832 TGTGGATTTGTGAAAGGTATACCG 59.061 41.667 16.31 0.00 42.08 4.02
2340 2570 4.939439 GTGGATTTGTGAAAGGTATACCGT 59.061 41.667 16.31 10.60 42.08 4.83
2341 2571 6.108015 GTGGATTTGTGAAAGGTATACCGTA 58.892 40.000 16.31 1.61 42.08 4.02
2342 2572 6.764560 GTGGATTTGTGAAAGGTATACCGTAT 59.235 38.462 16.31 6.56 42.08 3.06
2343 2573 7.927629 GTGGATTTGTGAAAGGTATACCGTATA 59.072 37.037 16.31 3.30 42.08 1.47
2344 2574 8.653191 TGGATTTGTGAAAGGTATACCGTATAT 58.347 33.333 16.31 0.00 42.08 0.86
2373 2603 3.992943 AAAGGTTCACCATACATCGGA 57.007 42.857 0.00 0.00 38.89 4.55
2374 2604 3.992943 AAGGTTCACCATACATCGGAA 57.007 42.857 0.00 0.00 38.89 4.30
2375 2605 3.992943 AGGTTCACCATACATCGGAAA 57.007 42.857 0.00 0.00 38.89 3.13
2376 2606 4.295141 AGGTTCACCATACATCGGAAAA 57.705 40.909 0.00 0.00 38.89 2.29
2377 2607 4.658063 AGGTTCACCATACATCGGAAAAA 58.342 39.130 0.00 0.00 38.89 1.94
2378 2608 4.700213 AGGTTCACCATACATCGGAAAAAG 59.300 41.667 0.00 0.00 38.89 2.27
2379 2609 4.457949 GGTTCACCATACATCGGAAAAAGT 59.542 41.667 0.00 0.00 35.64 2.66
2380 2610 5.048294 GGTTCACCATACATCGGAAAAAGTT 60.048 40.000 0.00 0.00 35.64 2.66
2381 2611 5.873179 TCACCATACATCGGAAAAAGTTC 57.127 39.130 0.00 0.00 0.00 3.01
2382 2612 5.309638 TCACCATACATCGGAAAAAGTTCA 58.690 37.500 0.00 0.00 35.25 3.18
2383 2613 5.765677 TCACCATACATCGGAAAAAGTTCAA 59.234 36.000 0.00 0.00 35.25 2.69
2384 2614 6.432783 TCACCATACATCGGAAAAAGTTCAAT 59.567 34.615 0.00 0.00 35.25 2.57
2385 2615 6.527722 CACCATACATCGGAAAAAGTTCAATG 59.472 38.462 0.00 0.00 35.83 2.82
2386 2616 6.208599 ACCATACATCGGAAAAAGTTCAATGT 59.791 34.615 9.95 9.95 41.18 2.71
2387 2617 7.392113 ACCATACATCGGAAAAAGTTCAATGTA 59.608 33.333 12.44 12.44 42.26 2.29
2388 2618 8.405531 CCATACATCGGAAAAAGTTCAATGTAT 58.594 33.333 14.59 14.59 44.86 2.29
2421 2651 9.546428 AAAATCAACATACTTTTCTTTCCCTTG 57.454 29.630 0.00 0.00 0.00 3.61
2422 2652 6.648879 TCAACATACTTTTCTTTCCCTTGG 57.351 37.500 0.00 0.00 0.00 3.61
2423 2653 6.369629 TCAACATACTTTTCTTTCCCTTGGA 58.630 36.000 0.00 0.00 0.00 3.53
2424 2654 7.010160 TCAACATACTTTTCTTTCCCTTGGAT 58.990 34.615 0.00 0.00 0.00 3.41
2425 2655 6.840780 ACATACTTTTCTTTCCCTTGGATG 57.159 37.500 0.00 0.00 0.00 3.51
2426 2656 6.552008 ACATACTTTTCTTTCCCTTGGATGA 58.448 36.000 0.00 0.00 0.00 2.92
2427 2657 6.434340 ACATACTTTTCTTTCCCTTGGATGAC 59.566 38.462 0.00 0.00 0.00 3.06
2428 2658 5.066913 ACTTTTCTTTCCCTTGGATGACT 57.933 39.130 0.00 0.00 0.00 3.41
2429 2659 5.458595 ACTTTTCTTTCCCTTGGATGACTT 58.541 37.500 0.00 0.00 0.00 3.01
2430 2660 5.899547 ACTTTTCTTTCCCTTGGATGACTTT 59.100 36.000 0.00 0.00 0.00 2.66
2431 2661 6.384015 ACTTTTCTTTCCCTTGGATGACTTTT 59.616 34.615 0.00 0.00 0.00 2.27
2432 2662 6.806668 TTTCTTTCCCTTGGATGACTTTTT 57.193 33.333 0.00 0.00 0.00 1.94
2433 2663 7.906199 TTTCTTTCCCTTGGATGACTTTTTA 57.094 32.000 0.00 0.00 0.00 1.52
2434 2664 7.524717 TTCTTTCCCTTGGATGACTTTTTAG 57.475 36.000 0.00 0.00 0.00 1.85
2435 2665 6.010219 TCTTTCCCTTGGATGACTTTTTAGG 58.990 40.000 0.00 0.00 0.00 2.69
2436 2666 3.697166 TCCCTTGGATGACTTTTTAGGC 58.303 45.455 0.00 0.00 0.00 3.93
2437 2667 3.333680 TCCCTTGGATGACTTTTTAGGCT 59.666 43.478 0.00 0.00 0.00 4.58
2438 2668 4.089361 CCCTTGGATGACTTTTTAGGCTT 58.911 43.478 0.00 0.00 0.00 4.35
2439 2669 4.528206 CCCTTGGATGACTTTTTAGGCTTT 59.472 41.667 0.00 0.00 0.00 3.51
2440 2670 5.714806 CCCTTGGATGACTTTTTAGGCTTTA 59.285 40.000 0.00 0.00 0.00 1.85
2441 2671 6.350194 CCCTTGGATGACTTTTTAGGCTTTAC 60.350 42.308 0.00 0.00 0.00 2.01
2442 2672 6.434340 CCTTGGATGACTTTTTAGGCTTTACT 59.566 38.462 0.00 0.00 0.00 2.24
2443 2673 7.610305 CCTTGGATGACTTTTTAGGCTTTACTA 59.390 37.037 0.00 0.00 0.00 1.82
2444 2674 8.561738 TTGGATGACTTTTTAGGCTTTACTAG 57.438 34.615 0.00 0.00 0.00 2.57
2445 2675 7.686434 TGGATGACTTTTTAGGCTTTACTAGT 58.314 34.615 0.00 0.00 0.00 2.57
2446 2676 8.818860 TGGATGACTTTTTAGGCTTTACTAGTA 58.181 33.333 0.00 0.00 0.00 1.82
2447 2677 9.315525 GGATGACTTTTTAGGCTTTACTAGTAG 57.684 37.037 2.23 0.00 0.00 2.57
2450 2680 9.086758 TGACTTTTTAGGCTTTACTAGTAGAGT 57.913 33.333 18.76 5.76 42.69 3.24
2451 2681 9.356433 GACTTTTTAGGCTTTACTAGTAGAGTG 57.644 37.037 18.76 5.93 39.39 3.51
2452 2682 7.818446 ACTTTTTAGGCTTTACTAGTAGAGTGC 59.182 37.037 18.76 13.43 39.39 4.40
2453 2683 5.848833 TTAGGCTTTACTAGTAGAGTGCC 57.151 43.478 18.76 19.63 42.53 5.01
2454 2684 3.032459 AGGCTTTACTAGTAGAGTGCCC 58.968 50.000 22.41 15.58 42.98 5.36
2455 2685 2.223758 GGCTTTACTAGTAGAGTGCCCG 60.224 54.545 18.76 0.00 38.34 6.13
2456 2686 2.426381 GCTTTACTAGTAGAGTGCCCGT 59.574 50.000 18.76 0.00 39.39 5.28
2457 2687 3.734293 GCTTTACTAGTAGAGTGCCCGTG 60.734 52.174 18.76 0.00 39.39 4.94
2458 2688 1.386533 TACTAGTAGAGTGCCCGTGC 58.613 55.000 3.59 0.00 39.39 5.34
2459 2689 1.064296 CTAGTAGAGTGCCCGTGCG 59.936 63.158 0.00 0.00 41.78 5.34
2460 2690 1.654954 CTAGTAGAGTGCCCGTGCGT 61.655 60.000 0.00 0.00 41.78 5.24
2461 2691 1.246056 TAGTAGAGTGCCCGTGCGTT 61.246 55.000 0.00 0.00 41.78 4.84
2462 2692 2.048597 TAGAGTGCCCGTGCGTTG 60.049 61.111 0.00 0.00 41.78 4.10
2479 2709 4.002797 GCCACGGGCTCTTGAAAT 57.997 55.556 7.58 0.00 46.69 2.17
2480 2710 3.168773 GCCACGGGCTCTTGAAATA 57.831 52.632 7.58 0.00 46.69 1.40
2481 2711 1.459450 GCCACGGGCTCTTGAAATAA 58.541 50.000 7.58 0.00 46.69 1.40
2482 2712 2.024414 GCCACGGGCTCTTGAAATAAT 58.976 47.619 7.58 0.00 46.69 1.28
2483 2713 2.427095 GCCACGGGCTCTTGAAATAATT 59.573 45.455 7.58 0.00 46.69 1.40
2484 2714 3.119137 GCCACGGGCTCTTGAAATAATTT 60.119 43.478 7.58 0.00 46.69 1.82
2485 2715 4.097286 GCCACGGGCTCTTGAAATAATTTA 59.903 41.667 7.58 0.00 46.69 1.40
2486 2716 5.578776 CCACGGGCTCTTGAAATAATTTAC 58.421 41.667 0.00 0.00 0.00 2.01
2487 2717 5.449999 CCACGGGCTCTTGAAATAATTTACC 60.450 44.000 0.00 0.00 0.00 2.85
2488 2718 5.124776 CACGGGCTCTTGAAATAATTTACCA 59.875 40.000 0.00 0.00 0.00 3.25
2489 2719 5.357032 ACGGGCTCTTGAAATAATTTACCAG 59.643 40.000 0.00 0.00 0.00 4.00
2490 2720 5.588648 CGGGCTCTTGAAATAATTTACCAGA 59.411 40.000 0.00 0.00 0.00 3.86
2491 2721 6.238484 CGGGCTCTTGAAATAATTTACCAGAG 60.238 42.308 0.00 0.00 0.00 3.35
2492 2722 6.603599 GGGCTCTTGAAATAATTTACCAGAGT 59.396 38.462 0.00 0.00 0.00 3.24
2493 2723 7.122799 GGGCTCTTGAAATAATTTACCAGAGTT 59.877 37.037 0.00 0.00 0.00 3.01
2494 2724 9.174166 GGCTCTTGAAATAATTTACCAGAGTTA 57.826 33.333 0.00 0.00 0.00 2.24
2495 2725 9.989869 GCTCTTGAAATAATTTACCAGAGTTAC 57.010 33.333 0.00 0.00 0.00 2.50
2510 2740 8.458573 ACCAGAGTTACATGTTAAATTTCACA 57.541 30.769 2.30 7.61 0.00 3.58
2511 2741 8.349983 ACCAGAGTTACATGTTAAATTTCACAC 58.650 33.333 2.30 0.00 0.00 3.82
2512 2742 8.349245 CCAGAGTTACATGTTAAATTTCACACA 58.651 33.333 2.30 4.11 0.00 3.72
2513 2743 9.897744 CAGAGTTACATGTTAAATTTCACACAT 57.102 29.630 2.30 6.14 0.00 3.21
2520 2750 9.809096 ACATGTTAAATTTCACACATACAAACA 57.191 25.926 7.34 3.27 0.00 2.83
2534 2764 9.973450 ACACATACAAACAATATAAAGCAAACA 57.027 25.926 0.00 0.00 0.00 2.83
2536 2766 9.973450 ACATACAAACAATATAAAGCAAACACA 57.027 25.926 0.00 0.00 0.00 3.72
2570 2800 6.594788 AACTGAAGTCCATTATTGCAATGT 57.405 33.333 22.27 7.73 0.00 2.71
2571 2801 7.701539 AACTGAAGTCCATTATTGCAATGTA 57.298 32.000 22.27 10.15 0.00 2.29
2572 2802 7.701539 ACTGAAGTCCATTATTGCAATGTAA 57.298 32.000 22.27 9.62 0.00 2.41
2573 2803 8.297470 ACTGAAGTCCATTATTGCAATGTAAT 57.703 30.769 22.27 11.58 0.00 1.89
2574 2804 8.752187 ACTGAAGTCCATTATTGCAATGTAATT 58.248 29.630 22.27 7.75 36.63 1.40
2610 2840 8.519492 AAAGAAAAATTAACGACATGTCCATG 57.481 30.769 20.03 8.85 44.15 3.66
2623 2853 5.947228 CATGTCCATGTAACAAACTGAGT 57.053 39.130 2.65 0.00 34.23 3.41
2624 2854 5.692814 CATGTCCATGTAACAAACTGAGTG 58.307 41.667 2.65 0.00 34.23 3.51
2625 2855 5.029807 TGTCCATGTAACAAACTGAGTGA 57.970 39.130 0.00 0.00 0.00 3.41
2626 2856 5.620206 TGTCCATGTAACAAACTGAGTGAT 58.380 37.500 0.00 0.00 0.00 3.06
2627 2857 5.469760 TGTCCATGTAACAAACTGAGTGATG 59.530 40.000 0.00 0.00 0.00 3.07
2628 2858 5.470098 GTCCATGTAACAAACTGAGTGATGT 59.530 40.000 0.00 0.00 0.00 3.06
2629 2859 6.017109 GTCCATGTAACAAACTGAGTGATGTT 60.017 38.462 17.45 17.45 39.23 2.71
2630 2860 6.204688 TCCATGTAACAAACTGAGTGATGTTC 59.795 38.462 17.00 11.20 37.25 3.18
2631 2861 6.373779 CATGTAACAAACTGAGTGATGTTCC 58.626 40.000 17.00 9.34 37.25 3.62
2632 2862 5.432645 TGTAACAAACTGAGTGATGTTCCA 58.567 37.500 17.00 11.39 37.25 3.53
2633 2863 5.883115 TGTAACAAACTGAGTGATGTTCCAA 59.117 36.000 17.00 5.44 37.25 3.53
2634 2864 4.900635 ACAAACTGAGTGATGTTCCAAC 57.099 40.909 0.00 0.00 0.00 3.77
2635 2865 4.526970 ACAAACTGAGTGATGTTCCAACT 58.473 39.130 0.00 0.00 0.00 3.16
2636 2866 4.336433 ACAAACTGAGTGATGTTCCAACTG 59.664 41.667 0.00 0.00 0.00 3.16
2637 2867 4.422073 AACTGAGTGATGTTCCAACTGA 57.578 40.909 0.00 0.00 0.00 3.41
2638 2868 4.422073 ACTGAGTGATGTTCCAACTGAA 57.578 40.909 0.00 0.00 0.00 3.02
2687 2917 8.213518 TCTAAATGATGCGCTTAAGAAATTCT 57.786 30.769 9.73 0.00 0.00 2.40
2688 2918 8.677300 TCTAAATGATGCGCTTAAGAAATTCTT 58.323 29.630 13.20 13.20 40.35 2.52
2689 2919 9.294030 CTAAATGATGCGCTTAAGAAATTCTTT 57.706 29.630 13.89 0.00 37.89 2.52
2691 2921 9.638239 AAATGATGCGCTTAAGAAATTCTTTAA 57.362 25.926 13.89 5.70 37.89 1.52
2692 2922 8.620533 ATGATGCGCTTAAGAAATTCTTTAAC 57.379 30.769 13.89 0.00 37.89 2.01
2693 2923 7.589395 TGATGCGCTTAAGAAATTCTTTAACA 58.411 30.769 13.89 6.36 37.89 2.41
2694 2924 8.079203 TGATGCGCTTAAGAAATTCTTTAACAA 58.921 29.630 13.89 1.30 37.89 2.83
2695 2925 8.986477 ATGCGCTTAAGAAATTCTTTAACAAT 57.014 26.923 13.89 0.00 37.89 2.71
2716 2946 8.950208 ACAATATCAGGTAAGTTTCTTCTAGC 57.050 34.615 0.00 0.00 0.00 3.42
2717 2947 8.763601 ACAATATCAGGTAAGTTTCTTCTAGCT 58.236 33.333 0.00 0.00 0.00 3.32
2718 2948 9.606631 CAATATCAGGTAAGTTTCTTCTAGCTT 57.393 33.333 0.00 0.00 0.00 3.74
2719 2949 9.825109 AATATCAGGTAAGTTTCTTCTAGCTTC 57.175 33.333 0.00 0.00 0.00 3.86
2720 2950 6.665992 TCAGGTAAGTTTCTTCTAGCTTCA 57.334 37.500 0.00 0.00 0.00 3.02
2721 2951 7.246171 TCAGGTAAGTTTCTTCTAGCTTCAT 57.754 36.000 0.00 0.00 0.00 2.57
2722 2952 7.680730 TCAGGTAAGTTTCTTCTAGCTTCATT 58.319 34.615 0.00 0.00 0.00 2.57
2723 2953 7.819900 TCAGGTAAGTTTCTTCTAGCTTCATTC 59.180 37.037 0.00 0.00 0.00 2.67
2724 2954 7.065204 CAGGTAAGTTTCTTCTAGCTTCATTCC 59.935 40.741 0.00 0.00 0.00 3.01
2725 2955 6.316640 GGTAAGTTTCTTCTAGCTTCATTCCC 59.683 42.308 0.00 0.00 0.00 3.97
2726 2956 5.505181 AGTTTCTTCTAGCTTCATTCCCA 57.495 39.130 0.00 0.00 0.00 4.37
2727 2957 6.072199 AGTTTCTTCTAGCTTCATTCCCAT 57.928 37.500 0.00 0.00 0.00 4.00
2728 2958 5.884792 AGTTTCTTCTAGCTTCATTCCCATG 59.115 40.000 0.00 0.00 0.00 3.66
2729 2959 5.698741 TTCTTCTAGCTTCATTCCCATGA 57.301 39.130 0.00 0.00 37.67 3.07
2730 2960 5.901413 TCTTCTAGCTTCATTCCCATGAT 57.099 39.130 0.00 0.00 39.28 2.45
2731 2961 5.618236 TCTTCTAGCTTCATTCCCATGATG 58.382 41.667 0.00 0.00 39.28 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 118 1.827399 GCCGGTGAGAGTTGGGAGAA 61.827 60.000 1.90 0.00 0.00 2.87
150 161 2.093447 GTGATGGAGTCCGATGGTCTTT 60.093 50.000 4.30 0.00 0.00 2.52
158 169 2.710902 CGCAGGTGATGGAGTCCGA 61.711 63.158 4.30 0.00 0.00 4.55
173 184 2.106938 GGTGATGATCCGCTCGCA 59.893 61.111 0.00 0.00 0.00 5.10
354 467 6.659668 CCACATCTACCTCTATTCCGATCTTA 59.340 42.308 0.00 0.00 0.00 2.10
377 492 3.973973 CAATCCCCCTTCTACTACATCCA 59.026 47.826 0.00 0.00 0.00 3.41
383 498 1.060876 CCCCCAATCCCCCTTCTACTA 60.061 57.143 0.00 0.00 0.00 1.82
404 534 4.497340 CGATTAGCCAGTGTTTGTTGTGTT 60.497 41.667 0.00 0.00 0.00 3.32
563 699 4.020617 CCAGTGAGGGCGCCAGAA 62.021 66.667 30.85 9.75 0.00 3.02
585 721 1.483004 GGAGGAGGAAGAACTAGTGCC 59.517 57.143 0.00 0.00 0.00 5.01
741 878 0.748450 CATTCGCTGGGCCATGAATT 59.252 50.000 23.89 11.99 0.00 2.17
857 996 0.257905 ATGCCTGACATGCCTGACAT 59.742 50.000 0.00 0.00 37.70 3.06
858 997 1.687014 ATGCCTGACATGCCTGACA 59.313 52.632 0.00 0.00 37.70 3.58
859 998 4.651867 ATGCCTGACATGCCTGAC 57.348 55.556 0.00 0.00 37.70 3.51
883 1022 1.423395 GAGAGGTGTGCTCGAACTTG 58.577 55.000 0.00 0.00 0.00 3.16
1012 1162 4.026744 CTCTCACTATCAACCTTCCTCCA 58.973 47.826 0.00 0.00 0.00 3.86
1086 1236 3.103742 GTCACTCTTCCTCCTCTCCATT 58.896 50.000 0.00 0.00 0.00 3.16
1138 1292 3.750130 ACATCACAGAGTTCATGACTTGC 59.250 43.478 0.00 0.00 39.19 4.01
1139 1293 7.010275 CAGATACATCACAGAGTTCATGACTTG 59.990 40.741 0.00 0.00 39.19 3.16
1161 1315 3.867600 GCACACAACTCATGGAGTCAGAT 60.868 47.826 0.00 0.00 42.59 2.90
1175 1329 2.740981 CTCTCCTTGATCTGCACACAAC 59.259 50.000 0.00 0.00 0.00 3.32
1357 1519 0.391130 GAGTGGTCATAGTTGCGGCA 60.391 55.000 0.00 0.00 0.00 5.69
1429 1591 2.582272 GCATGGGGATGCACTCAAA 58.418 52.632 2.14 0.00 46.25 2.69
1483 1645 0.320771 TTCCTCAGCTTGAACTCCGC 60.321 55.000 0.00 0.00 0.00 5.54
1560 1722 2.763215 GTGGCCCAACCCTGATCA 59.237 61.111 0.00 0.00 37.83 2.92
1665 1827 0.107508 CCACCTCAATGCCATCGTCT 60.108 55.000 0.00 0.00 0.00 4.18
1707 1869 1.600636 CCTGGCGACAAAGGCTTCA 60.601 57.895 0.00 0.00 42.06 3.02
1718 1880 3.168528 GGCCCTATTCCCTGGCGA 61.169 66.667 0.00 0.00 46.31 5.54
1769 1931 6.740110 ACAGTTCAACGCATAAACCATAAAA 58.260 32.000 0.00 0.00 0.00 1.52
1827 2014 9.733556 ACTTAACAACATGGTTCAGATAACATA 57.266 29.630 0.00 0.00 32.29 2.29
1828 2015 8.635765 ACTTAACAACATGGTTCAGATAACAT 57.364 30.769 0.00 0.00 32.29 2.71
1910 2103 2.290641 GTGAGGTTACCAGCACACTTTG 59.709 50.000 18.14 0.00 38.52 2.77
1911 2104 2.572290 GTGAGGTTACCAGCACACTTT 58.428 47.619 18.14 0.00 38.52 2.66
1943 2156 0.320421 CCTGGTGTGTGGTAACCTCG 60.320 60.000 0.00 0.00 37.36 4.63
1992 2205 2.497273 GCCTGCATGTTAGGGACAAATT 59.503 45.455 16.64 0.00 42.62 1.82
2054 2269 1.682854 ACCATCTGCAAGTTGTGTTGG 59.317 47.619 18.22 18.22 31.74 3.77
2055 2270 2.734670 CACCATCTGCAAGTTGTGTTG 58.265 47.619 4.48 3.93 31.74 3.33
2056 2271 1.067516 GCACCATCTGCAAGTTGTGTT 59.932 47.619 4.48 0.00 46.29 3.32
2057 2272 0.670162 GCACCATCTGCAAGTTGTGT 59.330 50.000 4.48 0.00 46.29 3.72
2058 2273 3.484524 GCACCATCTGCAAGTTGTG 57.515 52.632 4.48 0.00 46.29 3.33
2105 2335 4.874966 GCATTGCATAGTCTTCTCAACTCT 59.125 41.667 3.15 0.00 0.00 3.24
2166 2396 2.435059 GTCCTCGTCTTGGGCTGC 60.435 66.667 0.00 0.00 0.00 5.25
2167 2397 0.671781 CTTGTCCTCGTCTTGGGCTG 60.672 60.000 0.00 0.00 0.00 4.85
2168 2398 1.674057 CTTGTCCTCGTCTTGGGCT 59.326 57.895 0.00 0.00 0.00 5.19
2169 2399 2.035442 GCTTGTCCTCGTCTTGGGC 61.035 63.158 0.00 0.00 0.00 5.36
2170 2400 0.951040 GTGCTTGTCCTCGTCTTGGG 60.951 60.000 0.00 0.00 0.00 4.12
2171 2401 0.249868 TGTGCTTGTCCTCGTCTTGG 60.250 55.000 0.00 0.00 0.00 3.61
2172 2402 0.861837 GTGTGCTTGTCCTCGTCTTG 59.138 55.000 0.00 0.00 0.00 3.02
2173 2403 0.597637 CGTGTGCTTGTCCTCGTCTT 60.598 55.000 0.00 0.00 0.00 3.01
2174 2404 1.007271 CGTGTGCTTGTCCTCGTCT 60.007 57.895 0.00 0.00 0.00 4.18
2175 2405 2.658707 GCGTGTGCTTGTCCTCGTC 61.659 63.158 0.00 0.00 38.39 4.20
2176 2406 2.661866 GCGTGTGCTTGTCCTCGT 60.662 61.111 0.00 0.00 38.39 4.18
2177 2407 3.767230 CGCGTGTGCTTGTCCTCG 61.767 66.667 0.00 0.00 39.65 4.63
2178 2408 2.244651 AACGCGTGTGCTTGTCCTC 61.245 57.895 14.98 0.00 39.65 3.71
2179 2409 2.203015 AACGCGTGTGCTTGTCCT 60.203 55.556 14.98 0.00 39.65 3.85
2180 2410 2.042520 TTCAACGCGTGTGCTTGTCC 62.043 55.000 14.98 0.00 39.65 4.02
2181 2411 0.923911 GTTCAACGCGTGTGCTTGTC 60.924 55.000 14.98 1.44 39.65 3.18
2182 2412 1.061887 GTTCAACGCGTGTGCTTGT 59.938 52.632 14.98 0.00 39.65 3.16
2183 2413 1.061729 TGTTCAACGCGTGTGCTTG 59.938 52.632 14.98 7.10 39.65 4.01
2184 2414 1.061887 GTGTTCAACGCGTGTGCTT 59.938 52.632 14.98 0.00 39.65 3.91
2185 2415 2.103647 TGTGTTCAACGCGTGTGCT 61.104 52.632 14.98 0.00 39.65 4.40
2186 2416 1.932564 GTGTGTTCAACGCGTGTGC 60.933 57.895 14.98 4.31 37.91 4.57
2187 2417 1.297304 GGTGTGTTCAACGCGTGTG 60.297 57.895 14.98 13.75 40.40 3.82
2188 2418 1.701545 CTGGTGTGTTCAACGCGTGT 61.702 55.000 14.98 0.00 40.40 4.49
2189 2419 1.011242 CTGGTGTGTTCAACGCGTG 60.011 57.895 14.98 7.52 40.40 5.34
2190 2420 2.177580 CCTGGTGTGTTCAACGCGT 61.178 57.895 5.58 5.58 40.40 6.01
2191 2421 2.631428 CCTGGTGTGTTCAACGCG 59.369 61.111 3.53 3.53 40.40 6.01
2192 2422 2.331451 GCCTGGTGTGTTCAACGC 59.669 61.111 0.00 0.00 38.65 4.84
2193 2423 2.551912 GGGCCTGGTGTGTTCAACG 61.552 63.158 0.84 0.00 33.30 4.10
2194 2424 1.454847 TGGGCCTGGTGTGTTCAAC 60.455 57.895 4.53 0.00 0.00 3.18
2195 2425 1.454847 GTGGGCCTGGTGTGTTCAA 60.455 57.895 4.53 0.00 0.00 2.69
2196 2426 2.194597 GTGGGCCTGGTGTGTTCA 59.805 61.111 4.53 0.00 0.00 3.18
2197 2427 2.978010 CGTGGGCCTGGTGTGTTC 60.978 66.667 4.53 0.00 0.00 3.18
2198 2428 4.579384 CCGTGGGCCTGGTGTGTT 62.579 66.667 4.53 0.00 0.00 3.32
2217 2447 0.597118 TGTTTGATTGCGCTGGTTGC 60.597 50.000 9.73 0.00 38.57 4.17
2218 2448 1.850377 TTGTTTGATTGCGCTGGTTG 58.150 45.000 9.73 0.00 0.00 3.77
2219 2449 2.593346 TTTGTTTGATTGCGCTGGTT 57.407 40.000 9.73 0.00 0.00 3.67
2220 2450 2.593346 TTTTGTTTGATTGCGCTGGT 57.407 40.000 9.73 0.00 0.00 4.00
2221 2451 4.025061 TGAAATTTTGTTTGATTGCGCTGG 60.025 37.500 9.73 0.00 0.00 4.85
2222 2452 5.080642 TGAAATTTTGTTTGATTGCGCTG 57.919 34.783 9.73 0.00 0.00 5.18
2223 2453 5.500825 GTTGAAATTTTGTTTGATTGCGCT 58.499 33.333 9.73 0.00 0.00 5.92
2224 2454 4.372522 CGTTGAAATTTTGTTTGATTGCGC 59.627 37.500 0.00 0.00 0.00 6.09
2225 2455 4.372522 GCGTTGAAATTTTGTTTGATTGCG 59.627 37.500 0.00 0.00 0.00 4.85
2226 2456 5.261661 TGCGTTGAAATTTTGTTTGATTGC 58.738 33.333 0.00 0.00 0.00 3.56
2273 2503 9.906660 ACGCTAAACATTTCTGAAAATAAATCA 57.093 25.926 6.95 0.00 33.27 2.57
2279 2509 9.128107 CAATGTACGCTAAACATTTCTGAAAAT 57.872 29.630 6.95 0.00 39.83 1.82
2280 2510 8.346300 TCAATGTACGCTAAACATTTCTGAAAA 58.654 29.630 6.95 0.00 39.83 2.29
2281 2511 7.866729 TCAATGTACGCTAAACATTTCTGAAA 58.133 30.769 5.15 5.15 39.83 2.69
2282 2512 7.428282 TCAATGTACGCTAAACATTTCTGAA 57.572 32.000 5.69 0.00 39.83 3.02
2283 2513 7.428282 TTCAATGTACGCTAAACATTTCTGA 57.572 32.000 5.69 0.65 39.83 3.27
2284 2514 8.673626 ATTTCAATGTACGCTAAACATTTCTG 57.326 30.769 5.69 0.00 39.83 3.02
2285 2515 9.691362 AAATTTCAATGTACGCTAAACATTTCT 57.309 25.926 5.69 0.00 39.83 2.52
2290 2520 9.953697 ACTAAAAATTTCAATGTACGCTAAACA 57.046 25.926 0.00 0.00 0.00 2.83
2292 2522 9.953697 ACACTAAAAATTTCAATGTACGCTAAA 57.046 25.926 0.00 0.00 0.00 1.85
2293 2523 9.388346 CACACTAAAAATTTCAATGTACGCTAA 57.612 29.630 0.00 0.00 0.00 3.09
2294 2524 8.018520 CCACACTAAAAATTTCAATGTACGCTA 58.981 33.333 0.00 0.00 0.00 4.26
2295 2525 6.861055 CCACACTAAAAATTTCAATGTACGCT 59.139 34.615 0.00 0.00 0.00 5.07
2296 2526 6.858993 TCCACACTAAAAATTTCAATGTACGC 59.141 34.615 0.00 0.00 0.00 4.42
2297 2527 8.964420 ATCCACACTAAAAATTTCAATGTACG 57.036 30.769 0.00 0.00 0.00 3.67
2300 2530 9.612066 ACAAATCCACACTAAAAATTTCAATGT 57.388 25.926 0.00 0.00 0.00 2.71
2301 2531 9.866936 CACAAATCCACACTAAAAATTTCAATG 57.133 29.630 0.00 0.00 0.00 2.82
2302 2532 9.829507 TCACAAATCCACACTAAAAATTTCAAT 57.170 25.926 0.00 0.00 0.00 2.57
2303 2533 9.658799 TTCACAAATCCACACTAAAAATTTCAA 57.341 25.926 0.00 0.00 0.00 2.69
2304 2534 9.658799 TTTCACAAATCCACACTAAAAATTTCA 57.341 25.926 0.00 0.00 0.00 2.69
2306 2536 9.108284 CCTTTCACAAATCCACACTAAAAATTT 57.892 29.630 0.00 0.00 0.00 1.82
2307 2537 8.264347 ACCTTTCACAAATCCACACTAAAAATT 58.736 29.630 0.00 0.00 0.00 1.82
2308 2538 7.791029 ACCTTTCACAAATCCACACTAAAAAT 58.209 30.769 0.00 0.00 0.00 1.82
2309 2539 7.176589 ACCTTTCACAAATCCACACTAAAAA 57.823 32.000 0.00 0.00 0.00 1.94
2310 2540 6.783708 ACCTTTCACAAATCCACACTAAAA 57.216 33.333 0.00 0.00 0.00 1.52
2311 2541 9.005777 GTATACCTTTCACAAATCCACACTAAA 57.994 33.333 0.00 0.00 0.00 1.85
2312 2542 7.608761 GGTATACCTTTCACAAATCCACACTAA 59.391 37.037 15.09 0.00 0.00 2.24
2313 2543 7.107542 GGTATACCTTTCACAAATCCACACTA 58.892 38.462 15.09 0.00 0.00 2.74
2314 2544 5.944007 GGTATACCTTTCACAAATCCACACT 59.056 40.000 15.09 0.00 0.00 3.55
2315 2545 5.163794 CGGTATACCTTTCACAAATCCACAC 60.164 44.000 19.68 0.00 0.00 3.82
2316 2546 4.938832 CGGTATACCTTTCACAAATCCACA 59.061 41.667 19.68 0.00 0.00 4.17
2317 2547 4.939439 ACGGTATACCTTTCACAAATCCAC 59.061 41.667 19.68 0.00 0.00 4.02
2318 2548 5.168647 ACGGTATACCTTTCACAAATCCA 57.831 39.130 19.68 0.00 0.00 3.41
2351 2581 4.658063 TCCGATGTATGGTGAACCTTTTT 58.342 39.130 0.37 0.00 36.82 1.94
2352 2582 4.295141 TCCGATGTATGGTGAACCTTTT 57.705 40.909 0.37 0.00 36.82 2.27
2353 2583 3.992943 TCCGATGTATGGTGAACCTTT 57.007 42.857 0.37 0.00 36.82 3.11
2354 2584 3.992943 TTCCGATGTATGGTGAACCTT 57.007 42.857 0.37 0.00 36.82 3.50
2355 2585 3.992943 TTTCCGATGTATGGTGAACCT 57.007 42.857 0.37 0.00 36.82 3.50
2356 2586 4.457949 ACTTTTTCCGATGTATGGTGAACC 59.542 41.667 0.00 0.00 0.00 3.62
2357 2587 5.622770 ACTTTTTCCGATGTATGGTGAAC 57.377 39.130 0.00 0.00 0.00 3.18
2358 2588 5.765677 TGAACTTTTTCCGATGTATGGTGAA 59.234 36.000 0.00 0.00 0.00 3.18
2359 2589 5.309638 TGAACTTTTTCCGATGTATGGTGA 58.690 37.500 0.00 0.00 0.00 4.02
2360 2590 5.621197 TGAACTTTTTCCGATGTATGGTG 57.379 39.130 0.00 0.00 0.00 4.17
2361 2591 6.208599 ACATTGAACTTTTTCCGATGTATGGT 59.791 34.615 0.00 0.00 36.49 3.55
2362 2592 6.620678 ACATTGAACTTTTTCCGATGTATGG 58.379 36.000 0.00 0.00 36.49 2.74
2395 2625 9.546428 CAAGGGAAAGAAAAGTATGTTGATTTT 57.454 29.630 0.00 0.00 0.00 1.82
2396 2626 8.150296 CCAAGGGAAAGAAAAGTATGTTGATTT 58.850 33.333 0.00 0.00 0.00 2.17
2397 2627 7.508977 TCCAAGGGAAAGAAAAGTATGTTGATT 59.491 33.333 0.00 0.00 0.00 2.57
2398 2628 7.010160 TCCAAGGGAAAGAAAAGTATGTTGAT 58.990 34.615 0.00 0.00 0.00 2.57
2399 2629 6.369629 TCCAAGGGAAAGAAAAGTATGTTGA 58.630 36.000 0.00 0.00 0.00 3.18
2400 2630 6.648879 TCCAAGGGAAAGAAAAGTATGTTG 57.351 37.500 0.00 0.00 0.00 3.33
2401 2631 7.010160 TCATCCAAGGGAAAGAAAAGTATGTT 58.990 34.615 0.00 0.00 34.34 2.71
2402 2632 6.434340 GTCATCCAAGGGAAAGAAAAGTATGT 59.566 38.462 0.00 0.00 34.34 2.29
2403 2633 6.660949 AGTCATCCAAGGGAAAGAAAAGTATG 59.339 38.462 0.00 0.00 34.34 2.39
2404 2634 6.794534 AGTCATCCAAGGGAAAGAAAAGTAT 58.205 36.000 0.00 0.00 34.34 2.12
2405 2635 6.200878 AGTCATCCAAGGGAAAGAAAAGTA 57.799 37.500 0.00 0.00 34.34 2.24
2406 2636 5.066913 AGTCATCCAAGGGAAAGAAAAGT 57.933 39.130 0.00 0.00 34.34 2.66
2407 2637 6.410942 AAAGTCATCCAAGGGAAAGAAAAG 57.589 37.500 0.00 0.00 34.34 2.27
2408 2638 6.806668 AAAAGTCATCCAAGGGAAAGAAAA 57.193 33.333 0.00 0.00 34.34 2.29
2409 2639 6.806668 AAAAAGTCATCCAAGGGAAAGAAA 57.193 33.333 0.00 0.00 34.34 2.52
2410 2640 6.493458 CCTAAAAAGTCATCCAAGGGAAAGAA 59.507 38.462 0.00 0.00 34.34 2.52
2411 2641 6.010219 CCTAAAAAGTCATCCAAGGGAAAGA 58.990 40.000 0.00 0.00 34.34 2.52
2412 2642 5.336770 GCCTAAAAAGTCATCCAAGGGAAAG 60.337 44.000 0.00 0.00 34.34 2.62
2413 2643 4.526650 GCCTAAAAAGTCATCCAAGGGAAA 59.473 41.667 0.00 0.00 34.34 3.13
2414 2644 4.086457 GCCTAAAAAGTCATCCAAGGGAA 58.914 43.478 0.00 0.00 34.34 3.97
2415 2645 3.333680 AGCCTAAAAAGTCATCCAAGGGA 59.666 43.478 0.00 0.00 35.55 4.20
2416 2646 3.701664 AGCCTAAAAAGTCATCCAAGGG 58.298 45.455 0.00 0.00 0.00 3.95
2417 2647 5.728637 AAAGCCTAAAAAGTCATCCAAGG 57.271 39.130 0.00 0.00 0.00 3.61
2418 2648 7.454260 AGTAAAGCCTAAAAAGTCATCCAAG 57.546 36.000 0.00 0.00 0.00 3.61
2419 2649 8.161425 ACTAGTAAAGCCTAAAAAGTCATCCAA 58.839 33.333 0.00 0.00 0.00 3.53
2420 2650 7.686434 ACTAGTAAAGCCTAAAAAGTCATCCA 58.314 34.615 0.00 0.00 0.00 3.41
2421 2651 9.315525 CTACTAGTAAAGCCTAAAAAGTCATCC 57.684 37.037 3.76 0.00 0.00 3.51
2424 2654 9.086758 ACTCTACTAGTAAAGCCTAAAAAGTCA 57.913 33.333 3.00 0.00 36.36 3.41
2425 2655 9.356433 CACTCTACTAGTAAAGCCTAAAAAGTC 57.644 37.037 3.00 0.00 35.76 3.01
2426 2656 7.818446 GCACTCTACTAGTAAAGCCTAAAAAGT 59.182 37.037 3.00 0.00 35.76 2.66
2427 2657 7.278203 GGCACTCTACTAGTAAAGCCTAAAAAG 59.722 40.741 19.42 2.16 40.20 2.27
2428 2658 7.101700 GGCACTCTACTAGTAAAGCCTAAAAA 58.898 38.462 19.42 0.00 40.20 1.94
2429 2659 6.351626 GGGCACTCTACTAGTAAAGCCTAAAA 60.352 42.308 22.95 0.00 42.05 1.52
2430 2660 5.128335 GGGCACTCTACTAGTAAAGCCTAAA 59.872 44.000 22.95 0.00 42.05 1.85
2431 2661 4.648307 GGGCACTCTACTAGTAAAGCCTAA 59.352 45.833 22.95 0.00 42.05 2.69
2432 2662 4.213513 GGGCACTCTACTAGTAAAGCCTA 58.786 47.826 22.95 0.00 42.05 3.93
2433 2663 3.032459 GGGCACTCTACTAGTAAAGCCT 58.968 50.000 22.95 0.00 42.05 4.58
2434 2664 2.223758 CGGGCACTCTACTAGTAAAGCC 60.224 54.545 18.88 18.88 41.79 4.35
2435 2665 2.426381 ACGGGCACTCTACTAGTAAAGC 59.574 50.000 3.00 5.30 35.76 3.51
2436 2666 3.734293 GCACGGGCACTCTACTAGTAAAG 60.734 52.174 3.77 2.58 40.72 1.85
2437 2667 2.165030 GCACGGGCACTCTACTAGTAAA 59.835 50.000 3.77 0.00 40.72 2.01
2438 2668 1.747355 GCACGGGCACTCTACTAGTAA 59.253 52.381 3.77 0.00 40.72 2.24
2439 2669 1.386533 GCACGGGCACTCTACTAGTA 58.613 55.000 3.77 1.89 40.72 1.82
2440 2670 1.654954 CGCACGGGCACTCTACTAGT 61.655 60.000 11.77 0.00 41.24 2.57
2441 2671 1.064296 CGCACGGGCACTCTACTAG 59.936 63.158 11.77 0.00 41.24 2.57
2442 2672 1.246056 AACGCACGGGCACTCTACTA 61.246 55.000 11.77 0.00 41.24 1.82
2443 2673 2.571216 AACGCACGGGCACTCTACT 61.571 57.895 11.77 0.00 41.24 2.57
2444 2674 2.048503 AACGCACGGGCACTCTAC 60.049 61.111 11.77 0.00 41.24 2.59
2445 2675 2.048597 CAACGCACGGGCACTCTA 60.049 61.111 11.77 0.00 41.24 2.43
2463 2693 4.718940 AAATTATTTCAAGAGCCCGTGG 57.281 40.909 0.00 0.00 0.00 4.94
2464 2694 5.124776 TGGTAAATTATTTCAAGAGCCCGTG 59.875 40.000 0.00 0.00 0.00 4.94
2465 2695 5.258051 TGGTAAATTATTTCAAGAGCCCGT 58.742 37.500 0.00 0.00 0.00 5.28
2466 2696 5.588648 TCTGGTAAATTATTTCAAGAGCCCG 59.411 40.000 0.00 0.00 0.00 6.13
2467 2697 6.603599 ACTCTGGTAAATTATTTCAAGAGCCC 59.396 38.462 16.96 2.20 0.00 5.19
2468 2698 7.631717 ACTCTGGTAAATTATTTCAAGAGCC 57.368 36.000 16.96 5.08 0.00 4.70
2469 2699 9.989869 GTAACTCTGGTAAATTATTTCAAGAGC 57.010 33.333 16.96 3.47 0.00 4.09
2484 2714 9.562408 TGTGAAATTTAACATGTAACTCTGGTA 57.438 29.630 4.09 0.00 0.00 3.25
2485 2715 8.349983 GTGTGAAATTTAACATGTAACTCTGGT 58.650 33.333 11.62 0.00 0.00 4.00
2486 2716 8.349245 TGTGTGAAATTTAACATGTAACTCTGG 58.651 33.333 11.62 0.00 0.00 3.86
2487 2717 9.897744 ATGTGTGAAATTTAACATGTAACTCTG 57.102 29.630 11.62 0.00 32.18 3.35
2494 2724 9.809096 TGTTTGTATGTGTGAAATTTAACATGT 57.191 25.926 11.62 6.37 35.07 3.21
2508 2738 9.973450 TGTTTGCTTTATATTGTTTGTATGTGT 57.027 25.926 0.00 0.00 0.00 3.72
2510 2740 9.973450 TGTGTTTGCTTTATATTGTTTGTATGT 57.027 25.926 0.00 0.00 0.00 2.29
2544 2774 8.752187 ACATTGCAATAATGGACTTCAGTTATT 58.248 29.630 12.53 0.00 32.14 1.40
2545 2775 8.297470 ACATTGCAATAATGGACTTCAGTTAT 57.703 30.769 12.53 0.00 32.14 1.89
2546 2776 7.701539 ACATTGCAATAATGGACTTCAGTTA 57.298 32.000 12.53 0.00 32.14 2.24
2547 2777 6.594788 ACATTGCAATAATGGACTTCAGTT 57.405 33.333 12.53 0.00 32.14 3.16
2548 2778 7.701539 TTACATTGCAATAATGGACTTCAGT 57.298 32.000 12.53 3.84 32.14 3.41
2549 2779 9.027129 CAATTACATTGCAATAATGGACTTCAG 57.973 33.333 12.53 0.00 32.92 3.02
2550 2780 7.980662 CCAATTACATTGCAATAATGGACTTCA 59.019 33.333 12.53 0.00 38.92 3.02
2551 2781 8.196771 TCCAATTACATTGCAATAATGGACTTC 58.803 33.333 12.53 0.00 38.92 3.01
2552 2782 8.076910 TCCAATTACATTGCAATAATGGACTT 57.923 30.769 12.53 0.00 38.92 3.01
2553 2783 7.658525 TCCAATTACATTGCAATAATGGACT 57.341 32.000 12.53 0.00 38.92 3.85
2554 2784 9.979578 TTATCCAATTACATTGCAATAATGGAC 57.020 29.630 22.44 0.00 38.92 4.02
2555 2785 9.979578 GTTATCCAATTACATTGCAATAATGGA 57.020 29.630 22.33 22.33 38.92 3.41
2556 2786 9.761504 TGTTATCCAATTACATTGCAATAATGG 57.238 29.630 12.53 14.90 38.92 3.16
2584 2814 8.977505 CATGGACATGTCGTTAATTTTTCTTTT 58.022 29.630 19.33 0.00 34.23 2.27
2585 2815 8.519492 CATGGACATGTCGTTAATTTTTCTTT 57.481 30.769 19.33 0.00 34.23 2.52
2601 2831 5.469760 TCACTCAGTTTGTTACATGGACATG 59.530 40.000 10.57 10.57 44.15 3.21
2602 2832 5.620206 TCACTCAGTTTGTTACATGGACAT 58.380 37.500 0.00 0.00 0.00 3.06
2603 2833 5.029807 TCACTCAGTTTGTTACATGGACA 57.970 39.130 0.00 0.00 0.00 4.02
2604 2834 5.470098 ACATCACTCAGTTTGTTACATGGAC 59.530 40.000 0.00 0.00 0.00 4.02
2605 2835 5.620206 ACATCACTCAGTTTGTTACATGGA 58.380 37.500 0.00 0.00 0.00 3.41
2606 2836 5.947228 ACATCACTCAGTTTGTTACATGG 57.053 39.130 0.00 0.00 0.00 3.66
2607 2837 6.017192 TGGAACATCACTCAGTTTGTTACATG 60.017 38.462 10.18 0.00 37.85 3.21
2608 2838 6.061441 TGGAACATCACTCAGTTTGTTACAT 58.939 36.000 10.18 0.00 37.85 2.29
2609 2839 5.432645 TGGAACATCACTCAGTTTGTTACA 58.567 37.500 10.18 10.18 39.86 2.41
2610 2840 6.038271 AGTTGGAACATCACTCAGTTTGTTAC 59.962 38.462 5.86 5.86 39.30 2.50
2611 2841 6.038161 CAGTTGGAACATCACTCAGTTTGTTA 59.962 38.462 3.37 0.00 39.30 2.41
2612 2842 4.949856 AGTTGGAACATCACTCAGTTTGTT 59.050 37.500 3.05 3.05 39.30 2.83
2613 2843 4.336433 CAGTTGGAACATCACTCAGTTTGT 59.664 41.667 0.00 0.00 39.30 2.83
2614 2844 4.576053 TCAGTTGGAACATCACTCAGTTTG 59.424 41.667 0.00 0.00 39.30 2.93
2615 2845 4.780815 TCAGTTGGAACATCACTCAGTTT 58.219 39.130 0.00 0.00 39.30 2.66
2616 2846 4.422073 TCAGTTGGAACATCACTCAGTT 57.578 40.909 0.00 0.00 39.30 3.16
2617 2847 4.422073 TTCAGTTGGAACATCACTCAGT 57.578 40.909 0.00 0.00 39.30 3.41
2661 2891 8.844244 AGAATTTCTTAAGCGCATCATTTAGAT 58.156 29.630 11.47 0.00 37.48 1.98
2662 2892 8.213518 AGAATTTCTTAAGCGCATCATTTAGA 57.786 30.769 11.47 0.39 0.00 2.10
2663 2893 8.847444 AAGAATTTCTTAAGCGCATCATTTAG 57.153 30.769 11.47 0.00 34.42 1.85
2665 2895 9.638239 TTAAAGAATTTCTTAAGCGCATCATTT 57.362 25.926 11.47 0.00 40.09 2.32
2666 2896 9.076596 GTTAAAGAATTTCTTAAGCGCATCATT 57.923 29.630 11.47 0.00 40.09 2.57
2667 2897 8.243426 TGTTAAAGAATTTCTTAAGCGCATCAT 58.757 29.630 11.47 0.00 40.09 2.45
2668 2898 7.589395 TGTTAAAGAATTTCTTAAGCGCATCA 58.411 30.769 11.47 0.00 40.09 3.07
2669 2899 8.447787 TTGTTAAAGAATTTCTTAAGCGCATC 57.552 30.769 11.47 0.00 40.09 3.91
2670 2900 8.986477 ATTGTTAAAGAATTTCTTAAGCGCAT 57.014 26.923 11.47 0.00 40.09 4.73
2690 2920 9.384764 GCTAGAAGAAACTTACCTGATATTGTT 57.615 33.333 0.00 0.00 0.00 2.83
2691 2921 8.763601 AGCTAGAAGAAACTTACCTGATATTGT 58.236 33.333 0.00 0.00 0.00 2.71
2692 2922 9.606631 AAGCTAGAAGAAACTTACCTGATATTG 57.393 33.333 0.00 0.00 0.00 1.90
2693 2923 9.825109 GAAGCTAGAAGAAACTTACCTGATATT 57.175 33.333 0.00 0.00 0.00 1.28
2694 2924 8.982723 TGAAGCTAGAAGAAACTTACCTGATAT 58.017 33.333 0.00 0.00 0.00 1.63
2695 2925 8.362464 TGAAGCTAGAAGAAACTTACCTGATA 57.638 34.615 0.00 0.00 0.00 2.15
2696 2926 7.246171 TGAAGCTAGAAGAAACTTACCTGAT 57.754 36.000 0.00 0.00 0.00 2.90
2697 2927 6.665992 TGAAGCTAGAAGAAACTTACCTGA 57.334 37.500 0.00 0.00 0.00 3.86
2698 2928 7.065204 GGAATGAAGCTAGAAGAAACTTACCTG 59.935 40.741 0.00 0.00 0.00 4.00
2699 2929 7.106890 GGAATGAAGCTAGAAGAAACTTACCT 58.893 38.462 0.00 0.00 0.00 3.08
2700 2930 6.316640 GGGAATGAAGCTAGAAGAAACTTACC 59.683 42.308 0.00 0.00 0.00 2.85
2701 2931 6.879458 TGGGAATGAAGCTAGAAGAAACTTAC 59.121 38.462 0.00 0.00 0.00 2.34
2702 2932 7.016153 TGGGAATGAAGCTAGAAGAAACTTA 57.984 36.000 0.00 0.00 0.00 2.24
2703 2933 5.880901 TGGGAATGAAGCTAGAAGAAACTT 58.119 37.500 0.00 0.00 0.00 2.66
2704 2934 5.505181 TGGGAATGAAGCTAGAAGAAACT 57.495 39.130 0.00 0.00 0.00 2.66
2705 2935 5.882557 TCATGGGAATGAAGCTAGAAGAAAC 59.117 40.000 0.00 0.00 0.00 2.78
2706 2936 6.065976 TCATGGGAATGAAGCTAGAAGAAA 57.934 37.500 0.00 0.00 0.00 2.52
2707 2937 5.698741 TCATGGGAATGAAGCTAGAAGAA 57.301 39.130 0.00 0.00 0.00 2.52
2708 2938 5.618236 CATCATGGGAATGAAGCTAGAAGA 58.382 41.667 0.00 0.00 33.83 2.87
2709 2939 5.943706 CATCATGGGAATGAAGCTAGAAG 57.056 43.478 0.00 0.00 33.83 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.