Multiple sequence alignment - TraesCS6B01G102400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G102400 chr6B 100.000 4848 0 0 1 4848 80206449 80211296 0.000000e+00 8953.0
1 TraesCS6B01G102400 chr6B 91.856 1977 85 25 2646 4597 81666832 81664907 0.000000e+00 2689.0
2 TraesCS6B01G102400 chr6B 97.925 1446 17 5 811 2247 80682390 80683831 0.000000e+00 2492.0
3 TraesCS6B01G102400 chr6B 95.111 1493 62 4 765 2247 81668323 81666832 0.000000e+00 2342.0
4 TraesCS6B01G102400 chr6B 97.669 858 17 3 2646 3500 80683831 80684688 0.000000e+00 1471.0
5 TraesCS6B01G102400 chr6B 81.575 1270 189 26 996 2247 81008028 81009270 0.000000e+00 1007.0
6 TraesCS6B01G102400 chr6B 91.102 753 54 9 304 1052 81669684 81668941 0.000000e+00 1007.0
7 TraesCS6B01G102400 chr6B 86.935 597 29 15 3499 4094 80684849 80685397 4.120000e-175 625.0
8 TraesCS6B01G102400 chr6B 90.164 488 31 2 4125 4597 80685393 80685878 1.920000e-173 619.0
9 TraesCS6B01G102400 chr6B 77.151 709 120 28 1054 1740 57910710 57910022 1.650000e-99 374.0
10 TraesCS6B01G102400 chr6B 94.397 232 9 2 4621 4848 80685947 80686178 2.150000e-93 353.0
11 TraesCS6B01G102400 chr6B 92.273 220 13 2 4621 4836 81664839 81664620 4.710000e-80 309.0
12 TraesCS6B01G102400 chr6B 72.449 980 221 32 1190 2131 57726569 57725601 8.000000e-68 268.0
13 TraesCS6B01G102400 chr6B 83.981 206 26 5 1010 1215 61789932 61790130 1.780000e-44 191.0
14 TraesCS6B01G102400 chr6B 89.116 147 16 0 4237 4383 81010770 81010916 2.980000e-42 183.0
15 TraesCS6B01G102400 chr6B 79.654 231 27 11 1 215 239865260 239865486 1.090000e-31 148.0
16 TraesCS6B01G102400 chrUn 91.079 2253 118 21 2649 4848 27283963 27281741 0.000000e+00 2970.0
17 TraesCS6B01G102400 chrUn 92.431 1625 110 9 632 2247 27285586 27283966 0.000000e+00 2307.0
18 TraesCS6B01G102400 chrUn 81.873 1164 176 26 996 2141 27038600 27039746 0.000000e+00 948.0
19 TraesCS6B01G102400 chrUn 79.774 796 113 20 3820 4597 27040898 27041663 7.140000e-148 534.0
20 TraesCS6B01G102400 chrUn 85.417 192 22 5 1033 1222 27447748 27447935 1.380000e-45 195.0
21 TraesCS6B01G102400 chrUn 78.246 285 52 9 1175 1458 26707826 26707551 1.790000e-39 174.0
22 TraesCS6B01G102400 chrUn 90.000 100 8 2 4279 4377 27040208 27040306 1.420000e-25 128.0
23 TraesCS6B01G102400 chr6A 81.202 1181 180 25 996 2158 47139801 47140957 0.000000e+00 913.0
24 TraesCS6B01G102400 chr6A 81.602 799 113 18 3820 4597 47141998 47142783 8.860000e-177 630.0
25 TraesCS6B01G102400 chr6A 88.390 534 22 5 4342 4836 46765813 46766345 1.490000e-169 606.0
26 TraesCS6B01G102400 chr6A 92.124 419 29 4 2646 3062 46765077 46765493 5.410000e-164 588.0
27 TraesCS6B01G102400 chr6A 76.015 542 105 18 1140 1667 32865451 32864921 1.730000e-64 257.0
28 TraesCS6B01G102400 chr6A 72.324 925 207 31 1242 2131 32796684 32795774 1.350000e-60 244.0
29 TraesCS6B01G102400 chr6A 92.453 159 7 4 3065 3220 46765656 46765812 6.320000e-54 222.0
30 TraesCS6B01G102400 chr6A 82.895 152 15 6 4684 4833 47142972 47143114 5.090000e-25 126.0
31 TraesCS6B01G102400 chr6A 77.895 190 36 6 32 218 531403388 531403574 3.970000e-21 113.0
32 TraesCS6B01G102400 chr6A 93.182 44 3 0 2202 2245 47140975 47141018 1.130000e-06 65.8
33 TraesCS6B01G102400 chr4A 98.267 404 7 0 2246 2649 48307647 48307244 0.000000e+00 708.0
34 TraesCS6B01G102400 chr4A 78.191 188 31 4 37 214 73444515 73444328 1.430000e-20 111.0
35 TraesCS6B01G102400 chr5A 98.020 404 8 0 2246 2649 363601350 363600947 0.000000e+00 702.0
36 TraesCS6B01G102400 chr1A 98.010 402 8 0 2247 2648 153131872 153131471 0.000000e+00 699.0
37 TraesCS6B01G102400 chr1A 96.791 374 11 1 2276 2648 330663123 330663496 1.480000e-174 623.0
38 TraesCS6B01G102400 chr1A 76.577 222 34 11 9 216 461375788 461375571 6.640000e-19 106.0
39 TraesCS6B01G102400 chr2A 95.704 419 15 3 2245 2661 531728463 531728880 0.000000e+00 671.0
40 TraesCS6B01G102400 chr2A 88.235 272 23 7 355 620 575349015 575349283 2.820000e-82 316.0
41 TraesCS6B01G102400 chr6D 74.752 1109 210 39 1035 2105 29875223 29876299 2.680000e-117 433.0
42 TraesCS6B01G102400 chr6D 86.464 362 46 2 1053 1414 30079063 30078705 1.260000e-105 394.0
43 TraesCS6B01G102400 chr6D 97.701 174 4 0 2476 2649 284395953 284395780 2.840000e-77 300.0
44 TraesCS6B01G102400 chr6D 72.678 915 207 28 1242 2122 29932721 29933626 1.030000e-66 265.0
45 TraesCS6B01G102400 chr6D 95.181 166 8 0 2484 2649 216650359 216650194 3.720000e-66 263.0
46 TraesCS6B01G102400 chr6D 78.819 288 41 10 3826 4113 29934284 29934551 4.990000e-40 176.0
47 TraesCS6B01G102400 chr6D 81.019 216 31 3 1018 1226 27539148 27538936 3.880000e-36 163.0
48 TraesCS6B01G102400 chr6D 79.679 187 27 3 37 212 146941318 146941132 1.830000e-24 124.0
49 TraesCS6B01G102400 chr6D 77.487 191 29 8 34 212 457744497 457744685 8.580000e-18 102.0
50 TraesCS6B01G102400 chr6D 77.941 136 18 6 18 143 126849657 126849790 1.870000e-09 75.0
51 TraesCS6B01G102400 chr7D 91.667 276 19 1 2245 2520 111079419 111079690 3.540000e-101 379.0
52 TraesCS6B01G102400 chr7A 96.121 232 9 0 2276 2507 651747588 651747357 3.540000e-101 379.0
53 TraesCS6B01G102400 chr7A 91.304 276 20 1 2245 2520 25371299 25371028 1.650000e-99 374.0
54 TraesCS6B01G102400 chr7A 76.549 226 41 7 1 214 94802859 94803084 3.970000e-21 113.0
55 TraesCS6B01G102400 chr7A 75.926 216 29 12 9 212 573133449 573133653 6.680000e-14 89.8
56 TraesCS6B01G102400 chr4B 89.493 276 23 6 2246 2520 73146040 73145770 1.290000e-90 344.0
57 TraesCS6B01G102400 chr4B 94.118 51 1 2 632 681 544126648 544126697 5.200000e-10 76.8
58 TraesCS6B01G102400 chr3B 89.513 267 20 6 359 620 772261004 772260741 1.010000e-86 331.0
59 TraesCS6B01G102400 chr3B 88.390 267 23 6 359 620 772187481 772187218 1.010000e-81 315.0
60 TraesCS6B01G102400 chr3B 87.063 286 25 9 359 638 368322799 368323078 3.640000e-81 313.0
61 TraesCS6B01G102400 chr3B 84.545 110 17 0 105 214 592971894 592972003 5.130000e-20 110.0
62 TraesCS6B01G102400 chr4D 88.561 271 22 7 359 624 451164463 451164197 2.180000e-83 320.0
63 TraesCS6B01G102400 chr4D 80.423 189 24 5 38 214 56725969 56725782 1.090000e-26 132.0
64 TraesCS6B01G102400 chr7B 88.148 270 24 6 359 623 737775131 737774865 1.010000e-81 315.0
65 TraesCS6B01G102400 chr7B 86.667 285 27 9 359 638 290324430 290324708 6.100000e-79 305.0
66 TraesCS6B01G102400 chr5D 88.060 268 24 6 358 620 444353832 444354096 1.310000e-80 311.0
67 TraesCS6B01G102400 chr3D 94.350 177 10 0 2476 2652 396909646 396909470 6.180000e-69 272.0
68 TraesCS6B01G102400 chr1B 94.253 174 9 1 2476 2649 348331687 348331859 1.030000e-66 265.0
69 TraesCS6B01G102400 chr1D 81.532 222 29 4 3 212 447450708 447450929 6.450000e-39 172.0
70 TraesCS6B01G102400 chr1D 81.152 191 23 5 34 212 269991816 269992005 1.820000e-29 141.0
71 TraesCS6B01G102400 chr5B 80.543 221 30 7 4 212 524325271 524325052 1.810000e-34 158.0
72 TraesCS6B01G102400 chr5B 82.199 191 25 8 1038 1225 697095547 697095363 6.500000e-34 156.0
73 TraesCS6B01G102400 chr5B 78.947 114 22 2 1 113 434824015 434824127 5.200000e-10 76.8
74 TraesCS6B01G102400 chr2D 81.347 193 25 4 34 215 553767374 553767566 3.910000e-31 147.0
75 TraesCS6B01G102400 chr2D 77.273 220 38 6 9 216 203520243 203520462 8.520000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G102400 chr6B 80206449 80211296 4847 False 8953.000000 8953 100.000000 1 4848 1 chr6B.!!$F2 4847
1 TraesCS6B01G102400 chr6B 81664620 81669684 5064 True 1586.750000 2689 92.585500 304 4836 4 chr6B.!!$R3 4532
2 TraesCS6B01G102400 chr6B 80682390 80686178 3788 False 1112.000000 2492 93.418000 811 4848 5 chr6B.!!$F4 4037
3 TraesCS6B01G102400 chr6B 81008028 81010916 2888 False 595.000000 1007 85.345500 996 4383 2 chr6B.!!$F5 3387
4 TraesCS6B01G102400 chr6B 57910022 57910710 688 True 374.000000 374 77.151000 1054 1740 1 chr6B.!!$R2 686
5 TraesCS6B01G102400 chr6B 57725601 57726569 968 True 268.000000 268 72.449000 1190 2131 1 chr6B.!!$R1 941
6 TraesCS6B01G102400 chrUn 27281741 27285586 3845 True 2638.500000 2970 91.755000 632 4848 2 chrUn.!!$R2 4216
7 TraesCS6B01G102400 chrUn 27038600 27041663 3063 False 536.666667 948 83.882333 996 4597 3 chrUn.!!$F2 3601
8 TraesCS6B01G102400 chr6A 46765077 46766345 1268 False 472.000000 606 90.989000 2646 4836 3 chr6A.!!$F2 2190
9 TraesCS6B01G102400 chr6A 47139801 47143114 3313 False 433.700000 913 84.720250 996 4833 4 chr6A.!!$F3 3837
10 TraesCS6B01G102400 chr6A 32864921 32865451 530 True 257.000000 257 76.015000 1140 1667 1 chr6A.!!$R2 527
11 TraesCS6B01G102400 chr6A 32795774 32796684 910 True 244.000000 244 72.324000 1242 2131 1 chr6A.!!$R1 889
12 TraesCS6B01G102400 chr6D 29875223 29876299 1076 False 433.000000 433 74.752000 1035 2105 1 chr6D.!!$F1 1070
13 TraesCS6B01G102400 chr6D 29932721 29934551 1830 False 220.500000 265 75.748500 1242 4113 2 chr6D.!!$F4 2871

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.025001 CGACTTTTATGTCAGCCGCG 59.975 55.0 0.00 0.00 36.82 6.46 F
163 164 0.373716 CTTTTATGTCAGCCGCGACC 59.626 55.0 8.23 0.00 34.88 4.79 F
214 215 0.438830 CGCGTTGGAGTTGCTCTAAC 59.561 55.0 13.14 13.14 44.66 2.34 F
381 382 0.824759 ACCTCCGTCCTGTAATGAGC 59.175 55.0 0.00 0.00 0.00 4.26 F
2301 3382 0.036765 TTTCCTCGTCCCACCGATTG 60.037 55.0 0.00 0.00 36.08 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2248 3329 4.509970 GCATTTGCACGTCCATGTATACTA 59.490 41.667 4.17 0.0 41.59 1.82 R
2252 3333 2.849880 GCATTTGCACGTCCATGTAT 57.150 45.000 0.00 0.0 41.59 2.29 R
2270 3351 0.179215 CGAGGAAAGTCAATGCGTGC 60.179 55.000 0.00 0.0 0.00 5.34 R
2437 3518 0.031585 CACATGCTTGCTGCTGTTGT 59.968 50.000 0.00 0.6 43.37 3.32 R
4045 5674 0.111253 GGCTGCTAGGTGGGCAATAT 59.889 55.000 0.00 0.0 39.30 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.183555 GGGGGAGTAGTTGTCGCG 59.816 66.667 0.00 0.00 0.00 5.87
34 35 2.508663 GGGGAGTAGTTGTCGCGC 60.509 66.667 0.00 0.00 0.00 6.86
35 36 2.572284 GGGAGTAGTTGTCGCGCT 59.428 61.111 5.56 0.00 0.00 5.92
36 37 1.516603 GGGAGTAGTTGTCGCGCTC 60.517 63.158 5.56 0.00 0.00 5.03
37 38 1.868251 GGAGTAGTTGTCGCGCTCG 60.868 63.158 5.56 0.00 0.00 5.03
38 39 2.497928 GAGTAGTTGTCGCGCTCGC 61.498 63.158 5.56 3.90 35.26 5.03
57 58 4.086178 CGCGTCCGTCTCGTGTCT 62.086 66.667 0.00 0.00 34.71 3.41
58 59 2.502080 GCGTCCGTCTCGTGTCTG 60.502 66.667 0.00 0.00 0.00 3.51
59 60 2.502080 CGTCCGTCTCGTGTCTGC 60.502 66.667 0.00 0.00 0.00 4.26
60 61 2.502080 GTCCGTCTCGTGTCTGCG 60.502 66.667 0.00 0.00 0.00 5.18
61 62 4.400109 TCCGTCTCGTGTCTGCGC 62.400 66.667 0.00 0.00 0.00 6.09
64 65 4.400109 GTCTCGTGTCTGCGCCGA 62.400 66.667 4.18 0.00 0.00 5.54
65 66 4.400109 TCTCGTGTCTGCGCCGAC 62.400 66.667 23.20 23.20 34.52 4.79
66 67 4.700365 CTCGTGTCTGCGCCGACA 62.700 66.667 27.77 27.77 41.33 4.35
70 71 3.601685 TGTCTGCGCCGACACAGA 61.602 61.111 27.77 9.66 38.89 3.41
71 72 2.125912 GTCTGCGCCGACACAGAT 60.126 61.111 24.70 0.00 44.29 2.90
72 73 2.161486 GTCTGCGCCGACACAGATC 61.161 63.158 24.70 0.00 44.29 2.75
73 74 2.125952 CTGCGCCGACACAGATCA 60.126 61.111 4.18 0.00 35.90 2.92
74 75 2.125952 TGCGCCGACACAGATCAG 60.126 61.111 4.18 0.00 0.00 2.90
75 76 2.887568 GCGCCGACACAGATCAGG 60.888 66.667 0.00 0.00 0.00 3.86
76 77 2.887568 CGCCGACACAGATCAGGC 60.888 66.667 0.00 0.00 44.00 4.85
77 78 2.581354 GCCGACACAGATCAGGCT 59.419 61.111 0.00 0.00 44.06 4.58
78 79 1.816537 GCCGACACAGATCAGGCTA 59.183 57.895 0.00 0.00 44.06 3.93
79 80 0.175760 GCCGACACAGATCAGGCTAA 59.824 55.000 0.00 0.00 44.06 3.09
80 81 1.405526 GCCGACACAGATCAGGCTAAA 60.406 52.381 0.00 0.00 44.06 1.85
81 82 2.935238 GCCGACACAGATCAGGCTAAAA 60.935 50.000 0.00 0.00 44.06 1.52
82 83 3.334691 CCGACACAGATCAGGCTAAAAA 58.665 45.455 0.00 0.00 0.00 1.94
97 98 2.188912 AAAAATGGGTCGCGGATGG 58.811 52.632 6.13 0.00 0.00 3.51
98 99 1.319614 AAAAATGGGTCGCGGATGGG 61.320 55.000 6.13 0.00 0.00 4.00
99 100 2.493273 AAAATGGGTCGCGGATGGGT 62.493 55.000 6.13 0.00 0.00 4.51
100 101 2.886730 AAATGGGTCGCGGATGGGTC 62.887 60.000 6.13 0.00 0.00 4.46
110 111 4.467084 GATGGGTCGGCAAGCGGA 62.467 66.667 0.00 0.00 0.00 5.54
111 112 4.778143 ATGGGTCGGCAAGCGGAC 62.778 66.667 20.37 20.37 42.92 4.79
131 132 3.861263 GCGCCCGTTTGGATCGAC 61.861 66.667 0.00 0.00 37.49 4.20
132 133 3.550992 CGCCCGTTTGGATCGACG 61.551 66.667 7.64 7.64 37.49 5.12
133 134 3.861263 GCCCGTTTGGATCGACGC 61.861 66.667 8.77 0.00 37.91 5.19
134 135 3.550992 CCCGTTTGGATCGACGCG 61.551 66.667 3.53 3.53 37.91 6.01
135 136 2.807895 CCGTTTGGATCGACGCGT 60.808 61.111 13.85 13.85 37.91 6.01
136 137 2.377310 CCGTTTGGATCGACGCGTT 61.377 57.895 15.53 0.00 37.91 4.84
137 138 1.225368 CGTTTGGATCGACGCGTTG 60.225 57.895 20.76 20.76 32.11 4.10
138 139 1.131826 GTTTGGATCGACGCGTTGG 59.868 57.895 25.66 15.24 0.00 3.77
139 140 2.030401 TTTGGATCGACGCGTTGGG 61.030 57.895 25.66 12.67 0.00 4.12
147 148 4.922026 ACGCGTTGGGCCGACTTT 62.922 61.111 21.44 2.77 38.94 2.66
148 149 3.656045 CGCGTTGGGCCGACTTTT 61.656 61.111 21.44 0.00 38.94 2.27
149 150 2.319096 CGCGTTGGGCCGACTTTTA 61.319 57.895 21.44 0.00 38.94 1.52
150 151 1.641123 CGCGTTGGGCCGACTTTTAT 61.641 55.000 21.44 0.00 38.94 1.40
151 152 0.179174 GCGTTGGGCCGACTTTTATG 60.179 55.000 21.44 6.13 34.80 1.90
152 153 1.161843 CGTTGGGCCGACTTTTATGT 58.838 50.000 21.44 0.00 0.00 2.29
153 154 1.129811 CGTTGGGCCGACTTTTATGTC 59.870 52.381 21.44 0.00 0.00 3.06
154 155 2.156098 GTTGGGCCGACTTTTATGTCA 58.844 47.619 17.07 0.00 36.82 3.58
155 156 2.107950 TGGGCCGACTTTTATGTCAG 57.892 50.000 0.00 0.00 36.82 3.51
156 157 0.733150 GGGCCGACTTTTATGTCAGC 59.267 55.000 0.00 0.00 39.04 4.26
158 159 0.373716 GCCGACTTTTATGTCAGCCG 59.626 55.000 0.00 0.00 35.12 5.52
159 160 0.373716 CCGACTTTTATGTCAGCCGC 59.626 55.000 0.00 0.00 36.82 6.53
160 161 0.025001 CGACTTTTATGTCAGCCGCG 59.975 55.000 0.00 0.00 36.82 6.46
161 162 1.355971 GACTTTTATGTCAGCCGCGA 58.644 50.000 8.23 0.00 36.97 5.87
162 163 1.060698 GACTTTTATGTCAGCCGCGAC 59.939 52.381 8.23 0.00 36.97 5.19
163 164 0.373716 CTTTTATGTCAGCCGCGACC 59.626 55.000 8.23 0.00 34.88 4.79
164 165 1.022451 TTTTATGTCAGCCGCGACCC 61.022 55.000 8.23 0.00 34.88 4.46
165 166 2.173758 TTTATGTCAGCCGCGACCCA 62.174 55.000 8.23 0.00 34.88 4.51
166 167 2.173758 TTATGTCAGCCGCGACCCAA 62.174 55.000 8.23 0.00 34.88 4.12
167 168 2.173758 TATGTCAGCCGCGACCCAAA 62.174 55.000 8.23 0.00 34.88 3.28
168 169 3.723348 GTCAGCCGCGACCCAAAC 61.723 66.667 8.23 0.00 0.00 2.93
191 192 3.261951 CGCGCGGACGAAATGGAT 61.262 61.111 24.84 0.00 43.93 3.41
192 193 2.626455 GCGCGGACGAAATGGATC 59.374 61.111 8.83 0.00 43.93 3.36
194 195 2.585869 CGCGGACGAAATGGATCGG 61.586 63.158 0.00 0.00 46.82 4.18
197 198 2.626455 GACGAAATGGATCGGCGC 59.374 61.111 0.00 0.00 46.82 6.53
198 199 3.210419 GACGAAATGGATCGGCGCG 62.210 63.158 0.00 0.00 46.82 6.86
199 200 3.261951 CGAAATGGATCGGCGCGT 61.262 61.111 8.43 0.00 39.12 6.01
200 201 2.808958 CGAAATGGATCGGCGCGTT 61.809 57.895 8.43 0.00 39.12 4.84
201 202 1.297598 GAAATGGATCGGCGCGTTG 60.298 57.895 8.43 0.00 0.00 4.10
202 203 2.646799 GAAATGGATCGGCGCGTTGG 62.647 60.000 8.43 0.00 0.00 3.77
203 204 3.673956 AATGGATCGGCGCGTTGGA 62.674 57.895 8.43 2.80 0.00 3.53
204 205 4.812476 TGGATCGGCGCGTTGGAG 62.812 66.667 8.43 0.00 0.00 3.86
205 206 4.814294 GGATCGGCGCGTTGGAGT 62.814 66.667 8.43 0.00 0.00 3.85
206 207 2.813908 GATCGGCGCGTTGGAGTT 60.814 61.111 8.43 0.00 0.00 3.01
207 208 3.083600 GATCGGCGCGTTGGAGTTG 62.084 63.158 8.43 0.00 0.00 3.16
210 211 4.090057 GGCGCGTTGGAGTTGCTC 62.090 66.667 8.43 0.00 0.00 4.26
211 212 3.044305 GCGCGTTGGAGTTGCTCT 61.044 61.111 8.43 0.00 0.00 4.09
212 213 1.736645 GCGCGTTGGAGTTGCTCTA 60.737 57.895 8.43 0.00 0.00 2.43
213 214 1.289109 GCGCGTTGGAGTTGCTCTAA 61.289 55.000 8.43 0.00 0.00 2.10
214 215 0.438830 CGCGTTGGAGTTGCTCTAAC 59.561 55.000 13.14 13.14 44.66 2.34
224 225 4.689612 AGTTGCTCTAACTCTTGTTGGA 57.310 40.909 0.00 0.00 46.55 3.53
229 230 2.334977 TCTAACTCTTGTTGGAGCCCA 58.665 47.619 0.00 0.00 38.47 5.36
230 231 2.708861 TCTAACTCTTGTTGGAGCCCAA 59.291 45.455 2.84 2.84 41.69 4.12
231 232 1.986882 AACTCTTGTTGGAGCCCAAG 58.013 50.000 6.88 0.00 44.82 3.61
232 233 1.140312 ACTCTTGTTGGAGCCCAAGA 58.860 50.000 6.88 3.63 44.82 3.02
233 234 1.707427 ACTCTTGTTGGAGCCCAAGAT 59.293 47.619 6.88 0.00 44.82 2.40
234 235 2.912956 ACTCTTGTTGGAGCCCAAGATA 59.087 45.455 6.88 0.00 44.82 1.98
235 236 3.330701 ACTCTTGTTGGAGCCCAAGATAA 59.669 43.478 6.88 3.55 44.82 1.75
236 237 4.202567 ACTCTTGTTGGAGCCCAAGATAAA 60.203 41.667 6.88 0.94 44.82 1.40
237 238 4.335416 TCTTGTTGGAGCCCAAGATAAAG 58.665 43.478 6.88 8.67 44.82 1.85
238 239 3.085952 TGTTGGAGCCCAAGATAAAGG 57.914 47.619 6.88 0.00 44.82 3.11
239 240 2.378547 TGTTGGAGCCCAAGATAAAGGT 59.621 45.455 6.88 0.00 44.82 3.50
240 241 2.755103 GTTGGAGCCCAAGATAAAGGTG 59.245 50.000 6.88 0.00 44.82 4.00
241 242 2.274542 TGGAGCCCAAGATAAAGGTGA 58.725 47.619 0.00 0.00 0.00 4.02
242 243 2.026262 TGGAGCCCAAGATAAAGGTGAC 60.026 50.000 0.00 0.00 0.00 3.67
243 244 2.280628 GAGCCCAAGATAAAGGTGACG 58.719 52.381 0.00 0.00 0.00 4.35
244 245 1.906574 AGCCCAAGATAAAGGTGACGA 59.093 47.619 0.00 0.00 0.00 4.20
245 246 2.007608 GCCCAAGATAAAGGTGACGAC 58.992 52.381 0.00 0.00 0.00 4.34
246 247 2.354805 GCCCAAGATAAAGGTGACGACT 60.355 50.000 0.00 0.00 0.00 4.18
247 248 3.868754 GCCCAAGATAAAGGTGACGACTT 60.869 47.826 0.00 0.00 0.00 3.01
248 249 4.622220 GCCCAAGATAAAGGTGACGACTTA 60.622 45.833 0.00 0.00 0.00 2.24
249 250 5.671493 CCCAAGATAAAGGTGACGACTTAT 58.329 41.667 0.00 0.00 0.00 1.73
250 251 6.113411 CCCAAGATAAAGGTGACGACTTATT 58.887 40.000 0.00 0.00 0.00 1.40
251 252 6.037172 CCCAAGATAAAGGTGACGACTTATTG 59.963 42.308 0.00 0.00 0.00 1.90
252 253 6.816640 CCAAGATAAAGGTGACGACTTATTGA 59.183 38.462 0.00 0.00 0.00 2.57
253 254 7.495934 CCAAGATAAAGGTGACGACTTATTGAT 59.504 37.037 0.00 0.00 0.00 2.57
254 255 9.529325 CAAGATAAAGGTGACGACTTATTGATA 57.471 33.333 0.00 0.00 0.00 2.15
259 260 8.786826 AAAGGTGACGACTTATTGATATTGAA 57.213 30.769 0.00 0.00 0.00 2.69
260 261 7.772332 AGGTGACGACTTATTGATATTGAAC 57.228 36.000 0.00 0.00 0.00 3.18
261 262 7.556844 AGGTGACGACTTATTGATATTGAACT 58.443 34.615 0.00 0.00 0.00 3.01
262 263 8.692710 AGGTGACGACTTATTGATATTGAACTA 58.307 33.333 0.00 0.00 0.00 2.24
263 264 9.477484 GGTGACGACTTATTGATATTGAACTAT 57.523 33.333 0.00 0.00 0.00 2.12
279 280 8.950007 ATTGAACTATAAACCCAGAAAAAGGA 57.050 30.769 0.00 0.00 0.00 3.36
280 281 8.950007 TTGAACTATAAACCCAGAAAAAGGAT 57.050 30.769 0.00 0.00 0.00 3.24
339 340 3.510360 AGATACAAGAATATACGCGCCCT 59.490 43.478 5.73 0.00 0.00 5.19
343 344 4.638304 ACAAGAATATACGCGCCCTAAAT 58.362 39.130 5.73 0.00 0.00 1.40
362 363 8.015185 CCTAAATGGGCAGTTAACTAGTACTA 57.985 38.462 8.04 1.89 0.00 1.82
368 369 4.036144 GGCAGTTAACTAGTACTACCTCCG 59.964 50.000 8.04 0.00 0.00 4.63
370 371 5.220758 GCAGTTAACTAGTACTACCTCCGTC 60.221 48.000 8.04 0.00 0.00 4.79
373 374 3.557228 ACTAGTACTACCTCCGTCCTG 57.443 52.381 0.00 0.00 0.00 3.86
374 375 2.843113 ACTAGTACTACCTCCGTCCTGT 59.157 50.000 0.00 0.00 0.00 4.00
376 377 4.471386 ACTAGTACTACCTCCGTCCTGTAA 59.529 45.833 0.00 0.00 0.00 2.41
377 378 4.516652 AGTACTACCTCCGTCCTGTAAT 57.483 45.455 0.00 0.00 0.00 1.89
381 382 0.824759 ACCTCCGTCCTGTAATGAGC 59.175 55.000 0.00 0.00 0.00 4.26
385 386 2.093890 TCCGTCCTGTAATGAGCGTAA 58.906 47.619 0.00 0.00 0.00 3.18
388 389 3.489785 CCGTCCTGTAATGAGCGTAATTC 59.510 47.826 0.00 0.00 0.00 2.17
392 393 4.873827 TCCTGTAATGAGCGTAATTCCAAC 59.126 41.667 0.00 0.00 0.00 3.77
406 407 2.838637 TCCAACTTTGTTGGAGGGTT 57.161 45.000 23.38 0.00 43.17 4.11
410 411 4.647399 TCCAACTTTGTTGGAGGGTTAAAG 59.353 41.667 23.38 1.47 43.17 1.85
414 415 7.368059 CAACTTTGTTGGAGGGTTAAAGTATC 58.632 38.462 0.00 0.00 39.78 2.24
416 417 7.295340 ACTTTGTTGGAGGGTTAAAGTATCTT 58.705 34.615 0.00 0.00 39.14 2.40
424 425 9.292195 TGGAGGGTTAAAGTATCTTAAAGTTTG 57.708 33.333 0.00 0.00 0.00 2.93
437 438 5.644636 TCTTAAAGTTTGACCGAGTTTGTGT 59.355 36.000 0.00 0.00 0.00 3.72
470 471 6.040278 TGTCAATGCTTGTGAAACCAAATAGA 59.960 34.615 0.00 0.00 34.36 1.98
535 536 9.189156 ACTAATTTGATAGCATACATGTTGGTT 57.811 29.630 2.30 0.00 0.00 3.67
610 613 8.557029 AGTTGAAAATACACTCTTTTAAGGACG 58.443 33.333 0.00 0.00 0.00 4.79
625 628 7.713734 TTTAAGGACGGAGGGAGTATATATG 57.286 40.000 0.00 0.00 0.00 1.78
718 721 9.288576 GATGTGACAATTAATATGGATTGGAGA 57.711 33.333 13.06 2.63 37.53 3.71
790 794 9.710900 AAAAGAAATTAGTGATGATTTCAACCC 57.289 29.630 10.37 0.00 42.12 4.11
791 795 8.655935 AAGAAATTAGTGATGATTTCAACCCT 57.344 30.769 10.37 0.00 42.12 4.34
792 796 8.286191 AGAAATTAGTGATGATTTCAACCCTC 57.714 34.615 10.37 0.00 42.12 4.30
794 798 2.991250 AGTGATGATTTCAACCCTCCG 58.009 47.619 0.00 0.00 35.70 4.63
795 799 2.305927 AGTGATGATTTCAACCCTCCGT 59.694 45.455 0.00 0.00 35.70 4.69
843 848 6.729690 TCTTTGTGGTGAAAGGAATTGAAT 57.270 33.333 0.00 0.00 34.27 2.57
945 1849 3.741476 GGCTTTGGACCTGCGCTG 61.741 66.667 9.73 8.47 0.00 5.18
1086 1998 1.073373 CGAGATCCTCCTCCGCCTA 59.927 63.158 0.00 0.00 0.00 3.93
2248 3329 5.181748 GCTTCATGACCTCTTCAACATACT 58.818 41.667 0.00 0.00 37.92 2.12
2252 3333 8.589701 TTCATGACCTCTTCAACATACTAGTA 57.410 34.615 4.77 4.77 37.92 1.82
2253 3334 8.768501 TCATGACCTCTTCAACATACTAGTAT 57.231 34.615 9.71 9.71 37.92 2.12
2255 3336 9.900710 CATGACCTCTTCAACATACTAGTATAC 57.099 37.037 15.03 0.00 37.92 1.47
2256 3337 9.642343 ATGACCTCTTCAACATACTAGTATACA 57.358 33.333 15.03 0.00 37.92 2.29
2258 3339 9.900710 GACCTCTTCAACATACTAGTATACATG 57.099 37.037 15.03 13.38 0.00 3.21
2259 3340 8.861086 ACCTCTTCAACATACTAGTATACATGG 58.139 37.037 15.03 11.12 0.00 3.66
2260 3341 9.078990 CCTCTTCAACATACTAGTATACATGGA 57.921 37.037 15.03 8.39 0.00 3.41
2261 3342 9.900710 CTCTTCAACATACTAGTATACATGGAC 57.099 37.037 15.03 0.00 0.00 4.02
2263 3344 7.812690 TCAACATACTAGTATACATGGACGT 57.187 36.000 15.03 4.02 0.00 4.34
2264 3345 7.645402 TCAACATACTAGTATACATGGACGTG 58.355 38.462 15.03 3.47 0.00 4.49
2266 3347 5.533528 ACATACTAGTATACATGGACGTGCA 59.466 40.000 13.59 13.59 0.00 4.57
2267 3348 4.994907 ACTAGTATACATGGACGTGCAA 57.005 40.909 15.51 0.00 0.00 4.08
2268 3349 5.333299 ACTAGTATACATGGACGTGCAAA 57.667 39.130 15.51 2.95 0.00 3.68
2269 3350 5.914033 ACTAGTATACATGGACGTGCAAAT 58.086 37.500 15.51 10.71 0.00 2.32
2270 3351 5.753438 ACTAGTATACATGGACGTGCAAATG 59.247 40.000 15.51 11.68 0.00 2.32
2271 3352 2.849880 ATACATGGACGTGCAAATGC 57.150 45.000 15.51 0.00 42.50 3.56
2283 3364 1.421382 GCAAATGCACGCATTGACTT 58.579 45.000 17.45 0.00 44.86 3.01
2285 3366 2.159934 GCAAATGCACGCATTGACTTTC 60.160 45.455 17.45 1.38 44.86 2.62
2286 3367 2.352503 AATGCACGCATTGACTTTCC 57.647 45.000 16.13 0.00 44.05 3.13
2287 3368 1.538047 ATGCACGCATTGACTTTCCT 58.462 45.000 0.00 0.00 31.82 3.36
2288 3369 0.874390 TGCACGCATTGACTTTCCTC 59.126 50.000 0.00 0.00 0.00 3.71
2289 3370 0.179215 GCACGCATTGACTTTCCTCG 60.179 55.000 0.00 0.00 0.00 4.63
2291 3372 1.126846 CACGCATTGACTTTCCTCGTC 59.873 52.381 0.00 0.00 0.00 4.20
2292 3373 0.721718 CGCATTGACTTTCCTCGTCC 59.278 55.000 0.00 0.00 0.00 4.79
2293 3374 1.087501 GCATTGACTTTCCTCGTCCC 58.912 55.000 0.00 0.00 0.00 4.46
2294 3375 1.610624 GCATTGACTTTCCTCGTCCCA 60.611 52.381 0.00 0.00 0.00 4.37
2295 3376 2.076863 CATTGACTTTCCTCGTCCCAC 58.923 52.381 0.00 0.00 0.00 4.61
2296 3377 0.395312 TTGACTTTCCTCGTCCCACC 59.605 55.000 0.00 0.00 0.00 4.61
2297 3378 1.080025 GACTTTCCTCGTCCCACCG 60.080 63.158 0.00 0.00 0.00 4.94
2298 3379 1.530013 GACTTTCCTCGTCCCACCGA 61.530 60.000 0.00 0.00 35.22 4.69
2300 3381 0.249398 CTTTCCTCGTCCCACCGATT 59.751 55.000 0.00 0.00 36.08 3.34
2301 3382 0.036765 TTTCCTCGTCCCACCGATTG 60.037 55.000 0.00 0.00 36.08 2.67
2302 3383 1.895020 TTCCTCGTCCCACCGATTGG 61.895 60.000 0.00 0.00 46.47 3.16
2321 3402 3.663644 TGCATTGCACAACAACCAG 57.336 47.368 7.38 0.00 42.27 4.00
2322 3403 0.530211 TGCATTGCACAACAACCAGC 60.530 50.000 7.38 0.00 42.27 4.85
2324 3405 1.774639 CATTGCACAACAACCAGCTC 58.225 50.000 0.00 0.00 42.27 4.09
2325 3406 1.067364 CATTGCACAACAACCAGCTCA 59.933 47.619 0.00 0.00 42.27 4.26
2326 3407 1.180907 TTGCACAACAACCAGCTCAA 58.819 45.000 0.00 0.00 31.73 3.02
2329 3410 1.926510 GCACAACAACCAGCTCAAAAC 59.073 47.619 0.00 0.00 0.00 2.43
2330 3411 2.417243 GCACAACAACCAGCTCAAAACT 60.417 45.455 0.00 0.00 0.00 2.66
2331 3412 3.438360 CACAACAACCAGCTCAAAACTC 58.562 45.455 0.00 0.00 0.00 3.01
2333 3414 1.308998 ACAACCAGCTCAAAACTCCG 58.691 50.000 0.00 0.00 0.00 4.63
2335 3416 1.264288 CAACCAGCTCAAAACTCCGTC 59.736 52.381 0.00 0.00 0.00 4.79
2336 3417 0.759346 ACCAGCTCAAAACTCCGTCT 59.241 50.000 0.00 0.00 0.00 4.18
2337 3418 1.270358 ACCAGCTCAAAACTCCGTCTC 60.270 52.381 0.00 0.00 0.00 3.36
2338 3419 1.270305 CCAGCTCAAAACTCCGTCTCA 60.270 52.381 0.00 0.00 0.00 3.27
2339 3420 2.483876 CAGCTCAAAACTCCGTCTCAA 58.516 47.619 0.00 0.00 0.00 3.02
2342 3423 3.748568 AGCTCAAAACTCCGTCTCAAATC 59.251 43.478 0.00 0.00 0.00 2.17
2343 3424 3.120165 GCTCAAAACTCCGTCTCAAATCC 60.120 47.826 0.00 0.00 0.00 3.01
2344 3425 3.408634 TCAAAACTCCGTCTCAAATCCC 58.591 45.455 0.00 0.00 0.00 3.85
2348 3429 1.827969 ACTCCGTCTCAAATCCCTCTG 59.172 52.381 0.00 0.00 0.00 3.35
2349 3430 0.537188 TCCGTCTCAAATCCCTCTGC 59.463 55.000 0.00 0.00 0.00 4.26
2350 3431 0.807667 CCGTCTCAAATCCCTCTGCG 60.808 60.000 0.00 0.00 0.00 5.18
2351 3432 0.173481 CGTCTCAAATCCCTCTGCGA 59.827 55.000 0.00 0.00 0.00 5.10
2352 3433 1.202463 CGTCTCAAATCCCTCTGCGAT 60.202 52.381 0.00 0.00 0.00 4.58
2353 3434 2.208431 GTCTCAAATCCCTCTGCGATG 58.792 52.381 0.00 0.00 0.00 3.84
2355 3436 2.159043 TCTCAAATCCCTCTGCGATGAC 60.159 50.000 0.00 0.00 0.00 3.06
2356 3437 0.933097 CAAATCCCTCTGCGATGACG 59.067 55.000 0.00 0.00 42.93 4.35
2368 3449 2.289890 CGATGACGCGATTAGTACGA 57.710 50.000 15.93 0.00 0.00 3.43
2369 3450 2.223444 CGATGACGCGATTAGTACGAG 58.777 52.381 15.93 0.00 36.71 4.18
2370 3451 1.970608 GATGACGCGATTAGTACGAGC 59.029 52.381 15.93 0.00 34.29 5.03
2372 3453 3.126957 CGCGATTAGTACGAGCGC 58.873 61.111 19.98 19.98 44.19 5.92
2373 3454 1.368969 CGCGATTAGTACGAGCGCT 60.369 57.895 24.54 11.27 44.91 5.92
2374 3455 0.110956 CGCGATTAGTACGAGCGCTA 60.111 55.000 24.54 0.00 44.91 4.26
2377 3458 1.720860 CGATTAGTACGAGCGCTACCG 60.721 57.143 11.50 14.31 37.57 4.02
2378 3459 1.528586 GATTAGTACGAGCGCTACCGA 59.471 52.381 23.31 5.03 36.29 4.69
2379 3460 1.586422 TTAGTACGAGCGCTACCGAT 58.414 50.000 23.31 11.76 36.29 4.18
2380 3461 0.863799 TAGTACGAGCGCTACCGATG 59.136 55.000 23.31 6.61 36.29 3.84
2381 3462 2.009755 GTACGAGCGCTACCGATGC 61.010 63.158 23.31 9.87 36.29 3.91
2382 3463 2.184830 TACGAGCGCTACCGATGCT 61.185 57.895 23.31 5.21 42.73 3.79
2384 3465 1.008881 CGAGCGCTACCGATGCTTA 60.009 57.895 11.50 0.00 39.49 3.09
2385 3466 0.387367 CGAGCGCTACCGATGCTTAT 60.387 55.000 11.50 0.00 39.49 1.73
2386 3467 1.063806 GAGCGCTACCGATGCTTATG 58.936 55.000 11.50 0.00 39.49 1.90
2387 3468 0.319900 AGCGCTACCGATGCTTATGG 60.320 55.000 8.99 0.00 34.80 2.74
2388 3469 0.319555 GCGCTACCGATGCTTATGGA 60.320 55.000 0.00 0.00 36.29 3.41
2391 3472 1.070134 GCTACCGATGCTTATGGACCA 59.930 52.381 0.00 0.00 0.00 4.02
2392 3473 2.289694 GCTACCGATGCTTATGGACCAT 60.290 50.000 12.67 12.67 0.00 3.55
2393 3474 2.550830 ACCGATGCTTATGGACCATC 57.449 50.000 11.17 0.00 33.71 3.51
2394 3475 2.050144 ACCGATGCTTATGGACCATCT 58.950 47.619 11.17 0.00 34.63 2.90
2395 3476 2.224378 ACCGATGCTTATGGACCATCTG 60.224 50.000 11.17 6.26 34.63 2.90
2396 3477 1.802960 CGATGCTTATGGACCATCTGC 59.197 52.381 11.17 16.29 34.63 4.26
2397 3478 2.157738 GATGCTTATGGACCATCTGCC 58.842 52.381 21.58 9.37 34.12 4.85
2398 3479 0.918258 TGCTTATGGACCATCTGCCA 59.082 50.000 21.58 9.84 38.78 4.92
2399 3480 1.284491 TGCTTATGGACCATCTGCCAA 59.716 47.619 21.58 7.55 37.78 4.52
2400 3481 1.952296 GCTTATGGACCATCTGCCAAG 59.048 52.381 11.17 9.77 37.78 3.61
2401 3482 2.579873 CTTATGGACCATCTGCCAAGG 58.420 52.381 11.17 0.00 37.78 3.61
2403 3484 2.825836 GGACCATCTGCCAAGGCG 60.826 66.667 6.60 1.74 45.51 5.52
2422 3503 4.802424 CTGAGACAGCCAGCTACG 57.198 61.111 0.00 0.00 0.00 3.51
2423 3504 1.518133 CTGAGACAGCCAGCTACGC 60.518 63.158 0.00 0.00 0.00 4.42
2425 3506 4.803426 AGACAGCCAGCTACGCGC 62.803 66.667 5.73 0.00 39.57 6.86
2431 3512 4.873129 CCAGCTACGCGCACGGAT 62.873 66.667 5.73 0.00 46.04 4.18
2432 3513 3.620428 CAGCTACGCGCACGGATG 61.620 66.667 5.73 0.76 46.04 3.51
2433 3514 4.873129 AGCTACGCGCACGGATGG 62.873 66.667 5.73 0.00 46.04 3.51
2445 3526 2.359850 GGATGGCCGACAACAGCA 60.360 61.111 0.00 0.00 0.00 4.41
2446 3527 2.401766 GGATGGCCGACAACAGCAG 61.402 63.158 0.00 0.00 0.00 4.24
2447 3528 3.044059 GATGGCCGACAACAGCAGC 62.044 63.158 0.00 0.00 0.00 5.25
2448 3529 3.848301 ATGGCCGACAACAGCAGCA 62.848 57.895 0.00 0.00 0.00 4.41
2449 3530 3.286751 GGCCGACAACAGCAGCAA 61.287 61.111 0.00 0.00 0.00 3.91
2450 3531 2.253452 GCCGACAACAGCAGCAAG 59.747 61.111 0.00 0.00 0.00 4.01
2451 3532 2.253452 CCGACAACAGCAGCAAGC 59.747 61.111 0.00 0.00 46.19 4.01
2478 3559 5.759059 TGGATTTCTCCAGCATTAACATCT 58.241 37.500 0.00 0.00 46.95 2.90
2479 3560 5.591472 TGGATTTCTCCAGCATTAACATCTG 59.409 40.000 0.00 0.00 46.95 2.90
2482 3563 3.877559 TCTCCAGCATTAACATCTGTGG 58.122 45.455 0.00 0.00 0.00 4.17
2483 3564 3.519107 TCTCCAGCATTAACATCTGTGGA 59.481 43.478 0.00 0.00 0.00 4.02
2484 3565 4.164796 TCTCCAGCATTAACATCTGTGGAT 59.835 41.667 0.00 0.00 32.29 3.41
2488 3569 4.400251 CAGCATTAACATCTGTGGATGGTT 59.600 41.667 10.18 5.46 46.63 3.67
2489 3570 4.641989 AGCATTAACATCTGTGGATGGTTC 59.358 41.667 10.18 0.00 46.63 3.62
2490 3571 4.202050 GCATTAACATCTGTGGATGGTTCC 60.202 45.833 10.18 0.00 46.63 3.62
2491 3572 4.649267 TTAACATCTGTGGATGGTTCCA 57.351 40.909 10.18 0.00 46.63 3.53
2509 3590 4.258702 TCCAGAGAACAACAGTAGCTTC 57.741 45.455 0.00 0.00 0.00 3.86
2510 3591 2.989840 CCAGAGAACAACAGTAGCTTCG 59.010 50.000 0.00 0.00 0.00 3.79
2512 3593 2.297597 AGAGAACAACAGTAGCTTCGCT 59.702 45.455 0.00 0.00 43.41 4.93
2513 3594 2.408050 AGAACAACAGTAGCTTCGCTG 58.592 47.619 0.00 0.78 40.10 5.18
2514 3595 1.461127 GAACAACAGTAGCTTCGCTGG 59.539 52.381 14.33 3.68 40.10 4.85
2515 3596 0.393077 ACAACAGTAGCTTCGCTGGT 59.607 50.000 14.33 7.29 40.10 4.00
2516 3597 1.616865 ACAACAGTAGCTTCGCTGGTA 59.383 47.619 14.33 0.00 40.10 3.25
2517 3598 1.993370 CAACAGTAGCTTCGCTGGTAC 59.007 52.381 14.33 8.19 40.10 3.34
2520 3601 1.546961 AGTAGCTTCGCTGGTACTGT 58.453 50.000 15.06 0.00 45.77 3.55
2522 3603 2.683867 AGTAGCTTCGCTGGTACTGTAG 59.316 50.000 15.06 0.00 45.77 2.74
2523 3604 0.818296 AGCTTCGCTGGTACTGTAGG 59.182 55.000 0.00 0.00 37.57 3.18
2525 3606 1.747355 GCTTCGCTGGTACTGTAGGTA 59.253 52.381 0.00 0.00 0.00 3.08
2526 3607 2.223525 GCTTCGCTGGTACTGTAGGTAG 60.224 54.545 0.00 0.00 0.00 3.18
2527 3608 3.276857 CTTCGCTGGTACTGTAGGTAGA 58.723 50.000 0.00 0.00 0.00 2.59
2528 3609 3.354948 TCGCTGGTACTGTAGGTAGAA 57.645 47.619 0.00 0.00 0.00 2.10
2529 3610 3.012518 TCGCTGGTACTGTAGGTAGAAC 58.987 50.000 0.00 0.00 0.00 3.01
2530 3611 3.015327 CGCTGGTACTGTAGGTAGAACT 58.985 50.000 0.00 0.00 0.00 3.01
2532 3613 3.762823 GCTGGTACTGTAGGTAGAACTGT 59.237 47.826 0.00 0.00 34.07 3.55
2533 3614 4.946157 GCTGGTACTGTAGGTAGAACTGTA 59.054 45.833 0.00 0.00 32.23 2.74
2534 3615 5.066246 GCTGGTACTGTAGGTAGAACTGTAG 59.934 48.000 0.00 0.00 33.60 2.74
2537 3618 5.821995 GGTACTGTAGGTAGAACTGTAGGAG 59.178 48.000 0.00 0.00 33.60 3.69
2539 3620 3.276857 TGTAGGTAGAACTGTAGGAGCG 58.723 50.000 0.00 0.00 0.00 5.03
2540 3621 2.803030 AGGTAGAACTGTAGGAGCGA 57.197 50.000 0.00 0.00 0.00 4.93
2541 3622 3.083122 AGGTAGAACTGTAGGAGCGAA 57.917 47.619 0.00 0.00 0.00 4.70
2543 3624 3.633065 AGGTAGAACTGTAGGAGCGAATC 59.367 47.826 0.00 0.00 0.00 2.52
2554 3635 2.147150 GGAGCGAATCCTAGCATTTCC 58.853 52.381 0.09 0.00 45.64 3.13
2556 3637 3.206150 GAGCGAATCCTAGCATTTCCAA 58.794 45.455 0.00 0.00 35.48 3.53
2558 3639 2.033424 GCGAATCCTAGCATTTCCAACC 59.967 50.000 0.00 0.00 0.00 3.77
2559 3640 3.278574 CGAATCCTAGCATTTCCAACCA 58.721 45.455 0.00 0.00 0.00 3.67
2561 3642 4.339247 CGAATCCTAGCATTTCCAACCATT 59.661 41.667 0.00 0.00 0.00 3.16
2581 3662 5.628130 CATTGGATGGACTCTATCAATGGT 58.372 41.667 4.90 0.00 0.00 3.55
2582 3663 5.715439 TTGGATGGACTCTATCAATGGTT 57.285 39.130 4.90 0.00 0.00 3.67
2583 3664 5.296151 TGGATGGACTCTATCAATGGTTC 57.704 43.478 4.90 0.00 0.00 3.62
2584 3665 4.721274 TGGATGGACTCTATCAATGGTTCA 59.279 41.667 4.90 0.00 0.00 3.18
2585 3666 5.163269 TGGATGGACTCTATCAATGGTTCAG 60.163 44.000 4.90 0.00 0.00 3.02
2586 3667 4.760530 TGGACTCTATCAATGGTTCAGG 57.239 45.455 0.00 0.00 0.00 3.86
2587 3668 4.104086 TGGACTCTATCAATGGTTCAGGT 58.896 43.478 0.00 0.00 0.00 4.00
2588 3669 4.536090 TGGACTCTATCAATGGTTCAGGTT 59.464 41.667 0.00 0.00 0.00 3.50
2589 3670 4.878397 GGACTCTATCAATGGTTCAGGTTG 59.122 45.833 0.00 0.00 0.00 3.77
2590 3671 4.265073 ACTCTATCAATGGTTCAGGTTGC 58.735 43.478 0.00 0.00 0.00 4.17
2591 3672 4.018960 ACTCTATCAATGGTTCAGGTTGCT 60.019 41.667 0.00 0.00 0.00 3.91
2592 3673 4.922206 TCTATCAATGGTTCAGGTTGCTT 58.078 39.130 0.00 0.00 0.00 3.91
2593 3674 4.943705 TCTATCAATGGTTCAGGTTGCTTC 59.056 41.667 0.00 0.00 0.00 3.86
2594 3675 2.238521 TCAATGGTTCAGGTTGCTTCC 58.761 47.619 0.00 0.00 0.00 3.46
2595 3676 2.158475 TCAATGGTTCAGGTTGCTTCCT 60.158 45.455 0.00 0.00 38.51 3.36
2596 3677 3.073798 TCAATGGTTCAGGTTGCTTCCTA 59.926 43.478 0.32 0.00 35.87 2.94
2597 3678 2.859165 TGGTTCAGGTTGCTTCCTAG 57.141 50.000 0.32 0.00 35.87 3.02
2598 3679 2.054799 TGGTTCAGGTTGCTTCCTAGT 58.945 47.619 0.32 0.00 35.87 2.57
2599 3680 2.038557 TGGTTCAGGTTGCTTCCTAGTC 59.961 50.000 0.32 0.00 35.87 2.59
2600 3681 2.038557 GGTTCAGGTTGCTTCCTAGTCA 59.961 50.000 0.32 0.00 35.87 3.41
2601 3682 3.307762 GGTTCAGGTTGCTTCCTAGTCAT 60.308 47.826 0.32 0.00 35.87 3.06
2602 3683 3.616956 TCAGGTTGCTTCCTAGTCATG 57.383 47.619 0.32 0.00 35.87 3.07
2603 3684 3.173151 TCAGGTTGCTTCCTAGTCATGA 58.827 45.455 0.00 0.00 35.87 3.07
2604 3685 3.196469 TCAGGTTGCTTCCTAGTCATGAG 59.804 47.826 0.00 0.00 35.87 2.90
2605 3686 3.196469 CAGGTTGCTTCCTAGTCATGAGA 59.804 47.826 0.00 0.00 35.87 3.27
2606 3687 4.036518 AGGTTGCTTCCTAGTCATGAGAT 58.963 43.478 0.00 0.00 35.87 2.75
2607 3688 4.472833 AGGTTGCTTCCTAGTCATGAGATT 59.527 41.667 0.00 0.00 35.87 2.40
2608 3689 4.813697 GGTTGCTTCCTAGTCATGAGATTC 59.186 45.833 0.00 0.00 0.00 2.52
2609 3690 5.423015 GTTGCTTCCTAGTCATGAGATTCA 58.577 41.667 0.00 0.00 0.00 2.57
2610 3691 5.682234 TGCTTCCTAGTCATGAGATTCAA 57.318 39.130 0.00 0.00 0.00 2.69
2611 3692 6.053632 TGCTTCCTAGTCATGAGATTCAAA 57.946 37.500 0.00 0.00 0.00 2.69
2612 3693 6.475504 TGCTTCCTAGTCATGAGATTCAAAA 58.524 36.000 0.00 0.00 0.00 2.44
2613 3694 7.114754 TGCTTCCTAGTCATGAGATTCAAAAT 58.885 34.615 0.00 0.00 0.00 1.82
2614 3695 7.613022 TGCTTCCTAGTCATGAGATTCAAAATT 59.387 33.333 0.00 0.00 0.00 1.82
2615 3696 8.465201 GCTTCCTAGTCATGAGATTCAAAATTT 58.535 33.333 0.00 0.00 0.00 1.82
2617 3698 9.519191 TTCCTAGTCATGAGATTCAAAATTTCA 57.481 29.630 0.00 0.00 0.00 2.69
2618 3699 9.519191 TCCTAGTCATGAGATTCAAAATTTCAA 57.481 29.630 0.00 0.00 0.00 2.69
2624 3705 9.263538 TCATGAGATTCAAAATTTCAAAACTGG 57.736 29.630 0.00 0.00 0.00 4.00
2625 3706 9.048446 CATGAGATTCAAAATTTCAAAACTGGT 57.952 29.630 0.00 0.00 0.00 4.00
2627 3708 9.528018 TGAGATTCAAAATTTCAAAACTGGTAC 57.472 29.630 0.00 0.00 0.00 3.34
2628 3709 9.528018 GAGATTCAAAATTTCAAAACTGGTACA 57.472 29.630 0.00 0.00 0.00 2.90
2629 3710 9.313118 AGATTCAAAATTTCAAAACTGGTACAC 57.687 29.630 0.00 0.00 0.00 2.90
2630 3711 9.313118 GATTCAAAATTTCAAAACTGGTACACT 57.687 29.630 0.00 0.00 0.00 3.55
2633 3714 9.743057 TCAAAATTTCAAAACTGGTACACTATG 57.257 29.630 0.00 0.00 0.00 2.23
2634 3715 9.528018 CAAAATTTCAAAACTGGTACACTATGT 57.472 29.630 0.00 0.00 0.00 2.29
2637 3718 9.569122 AATTTCAAAACTGGTACACTATGTAGT 57.431 29.630 0.00 0.00 32.84 2.73
3257 4711 6.882610 ATTGCTCATTTTGTCACTTGTAGA 57.117 33.333 0.00 0.00 0.00 2.59
3283 4739 1.888215 CTGTTGCATGTGACAGGTCT 58.112 50.000 17.64 0.00 39.60 3.85
3332 4789 9.468532 AAATAAAGTTCAGTTCATCTTTTCAGC 57.531 29.630 0.00 0.00 33.22 4.26
3432 4890 6.234177 GGTATGGAGTGGAATGAGAATAAGG 58.766 44.000 0.00 0.00 0.00 2.69
3488 4947 1.888215 ACAGTCCAAGTCTGCATGTG 58.112 50.000 0.00 0.00 36.50 3.21
3655 5284 4.430007 TGTTTGTGCATCCTCGTATCTAC 58.570 43.478 0.00 0.00 0.00 2.59
3681 5310 4.260990 GGCCTTTTGTTTTTGTAATGCCAC 60.261 41.667 0.00 0.00 35.30 5.01
3737 5366 1.375326 GGTGGTGGACAAGAGGGAC 59.625 63.158 0.00 0.00 0.00 4.46
3744 5373 0.035915 GGACAAGAGGGACCTGAAGC 60.036 60.000 0.00 0.00 0.00 3.86
3745 5374 0.687354 GACAAGAGGGACCTGAAGCA 59.313 55.000 0.00 0.00 0.00 3.91
3748 5377 0.689623 AAGAGGGACCTGAAGCAGTG 59.310 55.000 0.00 0.00 0.00 3.66
3749 5378 1.197430 AGAGGGACCTGAAGCAGTGG 61.197 60.000 0.00 0.00 0.00 4.00
3750 5379 1.462238 AGGGACCTGAAGCAGTGGT 60.462 57.895 0.00 0.00 36.70 4.16
3751 5380 1.302832 GGGACCTGAAGCAGTGGTG 60.303 63.158 0.00 0.00 33.74 4.17
3752 5381 1.302832 GGACCTGAAGCAGTGGTGG 60.303 63.158 0.00 0.00 33.74 4.61
3753 5382 1.451936 GACCTGAAGCAGTGGTGGT 59.548 57.895 2.67 2.67 33.74 4.16
3754 5383 0.886490 GACCTGAAGCAGTGGTGGTG 60.886 60.000 7.49 0.00 33.61 4.17
3755 5384 1.601759 CCTGAAGCAGTGGTGGTGG 60.602 63.158 0.00 0.00 33.61 4.61
3756 5385 1.149174 CTGAAGCAGTGGTGGTGGT 59.851 57.895 0.00 0.00 33.61 4.16
3757 5386 0.466189 CTGAAGCAGTGGTGGTGGTT 60.466 55.000 0.00 0.00 38.31 3.67
3862 5491 8.723942 ACAACACATAAGAGGATTATTCTGTC 57.276 34.615 0.00 0.00 0.00 3.51
3892 5521 4.449068 GCTATTGTGATGTATTGGTCGAGG 59.551 45.833 0.00 0.00 0.00 4.63
3893 5522 2.309528 TGTGATGTATTGGTCGAGGC 57.690 50.000 0.00 0.00 0.00 4.70
3923 5552 2.945668 GGTAAGCTTAACCTCTGCATGG 59.054 50.000 10.63 4.55 33.97 3.66
3952 5581 7.994425 TGAGGCATCTGAACTGTTATTTTAA 57.006 32.000 0.00 0.00 0.00 1.52
3953 5582 8.402798 TGAGGCATCTGAACTGTTATTTTAAA 57.597 30.769 0.00 0.00 0.00 1.52
3954 5583 8.855110 TGAGGCATCTGAACTGTTATTTTAAAA 58.145 29.630 2.51 2.51 0.00 1.52
4045 5674 6.989155 TCTCTCTACAACCCTTTACTCAAA 57.011 37.500 0.00 0.00 0.00 2.69
4194 5832 0.036306 TTCTTCCTCTTTCCCGTGCC 59.964 55.000 0.00 0.00 0.00 5.01
4199 5837 1.006281 TCCTCTTTCCCGTGCCTAGTA 59.994 52.381 0.00 0.00 0.00 1.82
4234 5872 3.815401 ACTCTTTCTTCATTGGTGGTTCG 59.185 43.478 0.00 0.00 0.00 3.95
4306 6203 2.656560 AGGATGTGAGTGAGCGTTAC 57.343 50.000 0.00 0.00 0.00 2.50
4474 6390 8.783660 TCATACATTCATACTTCCTCTAGGTT 57.216 34.615 0.00 0.00 36.34 3.50
4666 6629 0.542702 CCCCTGAATTGGCTTGGTGT 60.543 55.000 0.00 0.00 0.00 4.16
4763 6786 7.120579 ACATGACTTTGAACAACACTGAAACTA 59.879 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.183555 CGCGACAACTACTCCCCC 59.816 66.667 0.00 0.00 0.00 5.40
17 18 2.508663 GCGCGACAACTACTCCCC 60.509 66.667 12.10 0.00 0.00 4.81
18 19 1.516603 GAGCGCGACAACTACTCCC 60.517 63.158 12.10 0.00 0.00 4.30
19 20 1.868251 CGAGCGCGACAACTACTCC 60.868 63.158 12.10 0.00 40.82 3.85
20 21 2.497928 GCGAGCGCGACAACTACTC 61.498 63.158 15.92 3.60 40.82 2.59
21 22 2.504244 GCGAGCGCGACAACTACT 60.504 61.111 15.92 0.00 40.82 2.57
40 41 4.086178 AGACACGAGACGGACGCG 62.086 66.667 3.53 3.53 46.44 6.01
41 42 2.502080 CAGACACGAGACGGACGC 60.502 66.667 0.00 0.00 0.00 5.19
42 43 2.502080 GCAGACACGAGACGGACG 60.502 66.667 0.00 0.00 0.00 4.79
43 44 2.502080 CGCAGACACGAGACGGAC 60.502 66.667 0.00 0.00 34.06 4.79
44 45 4.400109 GCGCAGACACGAGACGGA 62.400 66.667 0.30 0.00 34.06 4.69
47 48 4.400109 TCGGCGCAGACACGAGAC 62.400 66.667 10.83 0.00 27.25 3.36
48 49 4.400109 GTCGGCGCAGACACGAGA 62.400 66.667 31.48 5.06 40.65 4.04
49 50 4.700365 TGTCGGCGCAGACACGAG 62.700 66.667 34.45 4.36 45.18 4.18
57 58 2.125952 CTGATCTGTGTCGGCGCA 60.126 61.111 10.83 2.08 0.00 6.09
58 59 2.887568 CCTGATCTGTGTCGGCGC 60.888 66.667 0.00 0.00 0.00 6.53
59 60 2.004808 TAGCCTGATCTGTGTCGGCG 62.005 60.000 0.00 0.00 40.36 6.46
60 61 0.175760 TTAGCCTGATCTGTGTCGGC 59.824 55.000 0.00 0.00 37.76 5.54
61 62 2.672961 TTTAGCCTGATCTGTGTCGG 57.327 50.000 0.00 0.00 0.00 4.79
79 80 1.319614 CCCATCCGCGACCCATTTTT 61.320 55.000 8.23 0.00 0.00 1.94
80 81 1.752694 CCCATCCGCGACCCATTTT 60.753 57.895 8.23 0.00 0.00 1.82
81 82 2.124320 CCCATCCGCGACCCATTT 60.124 61.111 8.23 0.00 0.00 2.32
82 83 3.400599 GACCCATCCGCGACCCATT 62.401 63.158 8.23 0.00 0.00 3.16
83 84 3.861797 GACCCATCCGCGACCCAT 61.862 66.667 8.23 0.00 0.00 4.00
93 94 4.467084 TCCGCTTGCCGACCCATC 62.467 66.667 0.00 0.00 40.02 3.51
94 95 4.778143 GTCCGCTTGCCGACCCAT 62.778 66.667 3.36 0.00 40.02 4.00
114 115 3.861263 GTCGATCCAAACGGGCGC 61.861 66.667 0.00 0.00 36.21 6.53
115 116 3.550992 CGTCGATCCAAACGGGCG 61.551 66.667 0.00 0.00 35.32 6.13
116 117 3.861263 GCGTCGATCCAAACGGGC 61.861 66.667 0.00 0.00 39.24 6.13
117 118 3.550992 CGCGTCGATCCAAACGGG 61.551 66.667 0.00 10.94 43.69 5.28
118 119 2.377310 AACGCGTCGATCCAAACGG 61.377 57.895 14.44 5.12 39.24 4.44
119 120 1.225368 CAACGCGTCGATCCAAACG 60.225 57.895 14.44 5.77 41.68 3.60
120 121 1.131826 CCAACGCGTCGATCCAAAC 59.868 57.895 14.44 0.00 0.00 2.93
121 122 2.030401 CCCAACGCGTCGATCCAAA 61.030 57.895 14.44 0.00 0.00 3.28
122 123 2.433491 CCCAACGCGTCGATCCAA 60.433 61.111 14.44 0.00 0.00 3.53
130 131 2.992607 TAAAAGTCGGCCCAACGCGT 62.993 55.000 5.58 5.58 38.94 6.01
131 132 1.641123 ATAAAAGTCGGCCCAACGCG 61.641 55.000 3.53 3.53 38.94 6.01
132 133 0.179174 CATAAAAGTCGGCCCAACGC 60.179 55.000 0.00 0.00 0.00 4.84
133 134 1.129811 GACATAAAAGTCGGCCCAACG 59.870 52.381 0.00 0.00 0.00 4.10
134 135 2.156098 TGACATAAAAGTCGGCCCAAC 58.844 47.619 0.00 0.00 41.41 3.77
135 136 2.432444 CTGACATAAAAGTCGGCCCAA 58.568 47.619 0.00 0.00 41.41 4.12
136 137 2.107950 CTGACATAAAAGTCGGCCCA 57.892 50.000 0.00 0.00 41.41 5.36
140 141 0.373716 GCGGCTGACATAAAAGTCGG 59.626 55.000 0.00 0.00 45.58 4.79
141 142 0.025001 CGCGGCTGACATAAAAGTCG 59.975 55.000 0.00 0.00 44.16 4.18
142 143 1.060698 GTCGCGGCTGACATAAAAGTC 59.939 52.381 1.90 0.00 38.75 3.01
143 144 1.076332 GTCGCGGCTGACATAAAAGT 58.924 50.000 1.90 0.00 38.75 2.66
144 145 0.373716 GGTCGCGGCTGACATAAAAG 59.626 55.000 11.94 0.00 40.72 2.27
145 146 1.022451 GGGTCGCGGCTGACATAAAA 61.022 55.000 11.94 0.00 40.72 1.52
146 147 1.448893 GGGTCGCGGCTGACATAAA 60.449 57.895 11.94 0.00 40.72 1.40
147 148 2.173758 TTGGGTCGCGGCTGACATAA 62.174 55.000 11.94 13.93 40.72 1.90
148 149 2.173758 TTTGGGTCGCGGCTGACATA 62.174 55.000 11.94 0.00 40.72 2.29
149 150 3.545124 TTTGGGTCGCGGCTGACAT 62.545 57.895 11.94 0.00 40.72 3.06
150 151 4.243008 TTTGGGTCGCGGCTGACA 62.243 61.111 11.94 4.76 40.72 3.58
151 152 3.723348 GTTTGGGTCGCGGCTGAC 61.723 66.667 11.94 13.88 38.17 3.51
174 175 3.210419 GATCCATTTCGTCCGCGCG 62.210 63.158 25.67 25.67 38.14 6.86
175 176 2.626455 GATCCATTTCGTCCGCGC 59.374 61.111 0.00 0.00 38.14 6.86
176 177 2.585869 CCGATCCATTTCGTCCGCG 61.586 63.158 0.00 0.00 37.42 6.46
177 178 2.882366 GCCGATCCATTTCGTCCGC 61.882 63.158 0.00 0.00 37.42 5.54
178 179 2.585869 CGCCGATCCATTTCGTCCG 61.586 63.158 0.00 0.00 37.42 4.79
179 180 2.882366 GCGCCGATCCATTTCGTCC 61.882 63.158 0.00 0.00 37.42 4.79
180 181 2.626455 GCGCCGATCCATTTCGTC 59.374 61.111 0.00 0.00 37.42 4.20
181 182 3.261951 CGCGCCGATCCATTTCGT 61.262 61.111 0.00 0.00 37.42 3.85
182 183 2.808958 AACGCGCCGATCCATTTCG 61.809 57.895 5.73 0.00 38.83 3.46
183 184 1.297598 CAACGCGCCGATCCATTTC 60.298 57.895 5.73 0.00 0.00 2.17
184 185 2.760159 CCAACGCGCCGATCCATTT 61.760 57.895 5.73 0.00 0.00 2.32
185 186 3.202001 CCAACGCGCCGATCCATT 61.202 61.111 5.73 0.00 0.00 3.16
186 187 4.155733 TCCAACGCGCCGATCCAT 62.156 61.111 5.73 0.00 0.00 3.41
187 188 4.812476 CTCCAACGCGCCGATCCA 62.812 66.667 5.73 0.00 0.00 3.41
188 189 4.814294 ACTCCAACGCGCCGATCC 62.814 66.667 5.73 0.00 0.00 3.36
189 190 2.813908 AACTCCAACGCGCCGATC 60.814 61.111 5.73 0.00 0.00 3.69
190 191 3.118454 CAACTCCAACGCGCCGAT 61.118 61.111 5.73 0.00 0.00 4.18
193 194 4.090057 GAGCAACTCCAACGCGCC 62.090 66.667 5.73 0.00 0.00 6.53
194 195 1.289109 TTAGAGCAACTCCAACGCGC 61.289 55.000 5.73 0.00 0.00 6.86
195 196 0.438830 GTTAGAGCAACTCCAACGCG 59.561 55.000 3.53 3.53 34.06 6.01
196 197 1.797025 AGTTAGAGCAACTCCAACGC 58.203 50.000 1.24 0.00 44.48 4.84
204 205 4.999751 CTCCAACAAGAGTTAGAGCAAC 57.000 45.455 0.00 0.00 36.84 4.17
208 209 2.303022 TGGGCTCCAACAAGAGTTAGAG 59.697 50.000 0.00 0.00 43.54 2.43
209 210 2.334977 TGGGCTCCAACAAGAGTTAGA 58.665 47.619 0.00 0.00 35.85 2.10
210 211 2.859165 TGGGCTCCAACAAGAGTTAG 57.141 50.000 0.00 0.00 35.85 2.34
211 212 2.708861 TCTTGGGCTCCAACAAGAGTTA 59.291 45.455 3.23 0.00 45.76 2.24
212 213 1.494721 TCTTGGGCTCCAACAAGAGTT 59.505 47.619 3.23 0.00 45.76 3.01
213 214 1.140312 TCTTGGGCTCCAACAAGAGT 58.860 50.000 3.23 0.00 45.76 3.24
216 217 3.445096 CCTTTATCTTGGGCTCCAACAAG 59.555 47.826 2.84 0.00 44.09 3.16
217 218 3.181423 ACCTTTATCTTGGGCTCCAACAA 60.181 43.478 2.84 0.00 38.75 2.83
218 219 2.378547 ACCTTTATCTTGGGCTCCAACA 59.621 45.455 2.84 0.00 38.75 3.33
219 220 2.755103 CACCTTTATCTTGGGCTCCAAC 59.245 50.000 2.84 0.00 38.75 3.77
220 221 2.647299 TCACCTTTATCTTGGGCTCCAA 59.353 45.455 6.50 6.50 41.69 3.53
221 222 2.026262 GTCACCTTTATCTTGGGCTCCA 60.026 50.000 0.00 0.00 0.00 3.86
222 223 2.644676 GTCACCTTTATCTTGGGCTCC 58.355 52.381 0.00 0.00 0.00 4.70
223 224 2.093658 TCGTCACCTTTATCTTGGGCTC 60.094 50.000 0.00 0.00 0.00 4.70
224 225 1.906574 TCGTCACCTTTATCTTGGGCT 59.093 47.619 0.00 0.00 0.00 5.19
225 226 2.007608 GTCGTCACCTTTATCTTGGGC 58.992 52.381 0.00 0.00 0.00 5.36
226 227 3.611766 AGTCGTCACCTTTATCTTGGG 57.388 47.619 0.00 0.00 0.00 4.12
227 228 6.816640 TCAATAAGTCGTCACCTTTATCTTGG 59.183 38.462 0.00 0.00 0.00 3.61
228 229 7.827819 TCAATAAGTCGTCACCTTTATCTTG 57.172 36.000 0.00 0.00 0.00 3.02
233 234 9.878667 TTCAATATCAATAAGTCGTCACCTTTA 57.121 29.630 0.00 0.00 0.00 1.85
234 235 8.665685 GTTCAATATCAATAAGTCGTCACCTTT 58.334 33.333 0.00 0.00 0.00 3.11
235 236 8.041323 AGTTCAATATCAATAAGTCGTCACCTT 58.959 33.333 0.00 0.00 0.00 3.50
236 237 7.556844 AGTTCAATATCAATAAGTCGTCACCT 58.443 34.615 0.00 0.00 0.00 4.00
237 238 7.772332 AGTTCAATATCAATAAGTCGTCACC 57.228 36.000 0.00 0.00 0.00 4.02
254 255 8.950007 TCCTTTTTCTGGGTTTATAGTTCAAT 57.050 30.769 0.00 0.00 0.00 2.57
255 256 8.950007 ATCCTTTTTCTGGGTTTATAGTTCAA 57.050 30.769 0.00 0.00 0.00 2.69
316 317 3.858238 GGGCGCGTATATTCTTGTATCTC 59.142 47.826 8.43 0.00 0.00 2.75
322 323 4.142902 CCATTTAGGGCGCGTATATTCTTG 60.143 45.833 8.43 0.00 0.00 3.02
339 340 7.620888 AGGTAGTACTAGTTAACTGCCCATTTA 59.379 37.037 22.34 0.00 46.29 1.40
343 344 4.939255 AGGTAGTACTAGTTAACTGCCCA 58.061 43.478 22.34 0.00 46.29 5.36
350 351 5.045578 ACAGGACGGAGGTAGTACTAGTTAA 60.046 44.000 1.87 0.00 30.29 2.01
362 363 0.824759 GCTCATTACAGGACGGAGGT 59.175 55.000 0.00 0.00 0.00 3.85
368 369 4.439057 TGGAATTACGCTCATTACAGGAC 58.561 43.478 0.00 0.00 0.00 3.85
370 371 4.876107 AGTTGGAATTACGCTCATTACAGG 59.124 41.667 0.00 0.00 0.00 4.00
373 374 6.608610 ACAAAGTTGGAATTACGCTCATTAC 58.391 36.000 0.00 0.00 0.00 1.89
374 375 6.811253 ACAAAGTTGGAATTACGCTCATTA 57.189 33.333 0.00 0.00 0.00 1.90
376 377 5.460646 CAACAAAGTTGGAATTACGCTCAT 58.539 37.500 2.05 0.00 0.00 2.90
377 378 4.261405 CCAACAAAGTTGGAATTACGCTCA 60.261 41.667 21.24 0.00 42.06 4.26
381 382 4.320935 CCCTCCAACAAAGTTGGAATTACG 60.321 45.833 26.25 16.69 46.85 3.18
385 386 3.328535 ACCCTCCAACAAAGTTGGAAT 57.671 42.857 26.25 15.31 46.85 3.01
388 389 4.404394 ACTTTAACCCTCCAACAAAGTTGG 59.596 41.667 20.09 20.09 36.33 3.77
392 393 7.761038 AAGATACTTTAACCCTCCAACAAAG 57.239 36.000 0.00 0.00 33.45 2.77
406 407 9.768662 AACTCGGTCAAACTTTAAGATACTTTA 57.231 29.630 0.00 0.00 0.00 1.85
410 411 7.797123 CACAAACTCGGTCAAACTTTAAGATAC 59.203 37.037 0.00 0.00 0.00 2.24
414 415 5.875930 ACACAAACTCGGTCAAACTTTAAG 58.124 37.500 0.00 0.00 0.00 1.85
416 417 6.981762 TTACACAAACTCGGTCAAACTTTA 57.018 33.333 0.00 0.00 0.00 1.85
424 425 7.577979 TGACATATTTTTACACAAACTCGGTC 58.422 34.615 0.00 0.00 0.00 4.79
592 595 4.161754 CCCTCCGTCCTTAAAAGAGTGTAT 59.838 45.833 0.00 0.00 0.00 2.29
610 613 7.223472 AGGGTACTACATATATACTCCCTCC 57.777 44.000 0.00 0.00 38.37 4.30
768 772 7.484140 GGAGGGTTGAAATCATCACTAATTTC 58.516 38.462 0.00 0.00 40.62 2.17
790 794 1.298863 ACACGAACACACGACGGAG 60.299 57.895 0.00 0.00 37.03 4.63
791 795 1.586826 CACACGAACACACGACGGA 60.587 57.895 0.00 0.00 37.03 4.69
792 796 1.874915 ACACACGAACACACGACGG 60.875 57.895 0.00 0.00 37.03 4.79
794 798 1.634225 CCACACACGAACACACGAC 59.366 57.895 0.00 0.00 37.03 4.34
795 799 1.519676 CCCACACACGAACACACGA 60.520 57.895 0.00 0.00 37.03 4.35
843 848 1.352622 ACTGGAGGCCCAAAGTCACA 61.353 55.000 0.00 0.00 42.98 3.58
868 1772 2.285592 TGCTCAGGGCCCATGAGA 60.286 61.111 36.16 24.72 45.80 3.27
871 1775 4.435970 TGCTGCTCAGGGCCCATG 62.436 66.667 27.56 19.27 40.92 3.66
945 1849 1.598130 GGTGGTGTGCAGTGAGTCC 60.598 63.158 0.00 0.00 0.00 3.85
2248 3329 4.509970 GCATTTGCACGTCCATGTATACTA 59.490 41.667 4.17 0.00 41.59 1.82
2252 3333 2.849880 GCATTTGCACGTCCATGTAT 57.150 45.000 0.00 0.00 41.59 2.29
2264 3345 1.421382 AAGTCAATGCGTGCATTTGC 58.579 45.000 16.93 12.35 43.32 3.68
2266 3347 2.297033 AGGAAAGTCAATGCGTGCATTT 59.703 40.909 16.93 3.81 43.32 2.32
2267 3348 1.888512 AGGAAAGTCAATGCGTGCATT 59.111 42.857 14.03 14.03 46.35 3.56
2268 3349 1.470098 GAGGAAAGTCAATGCGTGCAT 59.530 47.619 0.51 0.51 38.46 3.96
2269 3350 0.874390 GAGGAAAGTCAATGCGTGCA 59.126 50.000 0.00 0.00 0.00 4.57
2270 3351 0.179215 CGAGGAAAGTCAATGCGTGC 60.179 55.000 0.00 0.00 0.00 5.34
2271 3352 1.126846 GACGAGGAAAGTCAATGCGTG 59.873 52.381 0.00 0.00 38.42 5.34
2272 3353 1.429463 GACGAGGAAAGTCAATGCGT 58.571 50.000 0.00 0.00 38.42 5.24
2273 3354 0.721718 GGACGAGGAAAGTCAATGCG 59.278 55.000 0.00 0.00 40.20 4.73
2274 3355 1.087501 GGGACGAGGAAAGTCAATGC 58.912 55.000 0.00 0.00 40.20 3.56
2275 3356 2.076863 GTGGGACGAGGAAAGTCAATG 58.923 52.381 0.00 0.00 40.20 2.82
2276 3357 1.003233 GGTGGGACGAGGAAAGTCAAT 59.997 52.381 0.00 0.00 40.20 2.57
2277 3358 0.395312 GGTGGGACGAGGAAAGTCAA 59.605 55.000 0.00 0.00 40.20 3.18
2278 3359 1.812686 CGGTGGGACGAGGAAAGTCA 61.813 60.000 0.00 0.00 40.20 3.41
2279 3360 1.080025 CGGTGGGACGAGGAAAGTC 60.080 63.158 0.00 0.00 37.86 3.01
2280 3361 1.532316 TCGGTGGGACGAGGAAAGT 60.532 57.895 0.00 0.00 38.06 2.66
2281 3362 3.373226 TCGGTGGGACGAGGAAAG 58.627 61.111 0.00 0.00 38.06 2.62
2303 3384 0.530211 GCTGGTTGTTGTGCAATGCA 60.530 50.000 2.72 2.72 39.55 3.96
2304 3385 0.249573 AGCTGGTTGTTGTGCAATGC 60.250 50.000 0.00 0.00 39.55 3.56
2309 3390 1.926510 GTTTTGAGCTGGTTGTTGTGC 59.073 47.619 0.00 0.00 0.00 4.57
2311 3392 2.427095 GGAGTTTTGAGCTGGTTGTTGT 59.573 45.455 0.00 0.00 0.00 3.32
2315 3396 1.308998 ACGGAGTTTTGAGCTGGTTG 58.691 50.000 0.00 0.00 37.78 3.77
2316 3397 3.800826 ACGGAGTTTTGAGCTGGTT 57.199 47.368 0.00 0.00 37.78 3.67
2329 3410 1.472376 GCAGAGGGATTTGAGACGGAG 60.472 57.143 0.00 0.00 0.00 4.63
2330 3411 0.537188 GCAGAGGGATTTGAGACGGA 59.463 55.000 0.00 0.00 0.00 4.69
2331 3412 0.807667 CGCAGAGGGATTTGAGACGG 60.808 60.000 0.00 0.00 0.00 4.79
2333 3414 2.159043 TCATCGCAGAGGGATTTGAGAC 60.159 50.000 0.00 0.00 43.63 3.36
2335 3416 2.208431 GTCATCGCAGAGGGATTTGAG 58.792 52.381 0.00 0.00 43.63 3.02
2336 3417 1.471501 CGTCATCGCAGAGGGATTTGA 60.472 52.381 0.00 0.00 43.63 2.69
2337 3418 0.933097 CGTCATCGCAGAGGGATTTG 59.067 55.000 0.00 0.00 43.63 2.32
2338 3419 3.369381 CGTCATCGCAGAGGGATTT 57.631 52.632 0.00 0.00 43.63 2.17
2349 3430 2.223444 CTCGTACTAATCGCGTCATCG 58.777 52.381 5.77 3.85 40.37 3.84
2350 3431 1.970608 GCTCGTACTAATCGCGTCATC 59.029 52.381 5.77 0.00 0.00 2.92
2351 3432 1.659491 CGCTCGTACTAATCGCGTCAT 60.659 52.381 5.77 0.00 39.07 3.06
2352 3433 0.315625 CGCTCGTACTAATCGCGTCA 60.316 55.000 5.77 0.00 39.07 4.35
2353 3434 1.586610 GCGCTCGTACTAATCGCGTC 61.587 60.000 5.77 0.00 45.01 5.19
2355 3436 3.126957 GCGCTCGTACTAATCGCG 58.873 61.111 0.00 0.00 45.88 5.87
2356 3437 1.316414 GTAGCGCTCGTACTAATCGC 58.684 55.000 16.34 9.55 45.34 4.58
2358 3439 1.528586 TCGGTAGCGCTCGTACTAATC 59.471 52.381 16.34 0.00 0.00 1.75
2359 3440 1.586422 TCGGTAGCGCTCGTACTAAT 58.414 50.000 16.34 0.00 0.00 1.73
2362 3443 1.647629 CATCGGTAGCGCTCGTACT 59.352 57.895 16.34 0.00 0.00 2.73
2363 3444 2.009755 GCATCGGTAGCGCTCGTAC 61.010 63.158 16.34 6.75 0.00 3.67
2365 3446 1.721664 TAAGCATCGGTAGCGCTCGT 61.722 55.000 16.34 0.00 34.11 4.18
2366 3447 0.387367 ATAAGCATCGGTAGCGCTCG 60.387 55.000 16.34 13.66 34.11 5.03
2367 3448 1.063806 CATAAGCATCGGTAGCGCTC 58.936 55.000 16.34 5.63 34.11 5.03
2368 3449 0.319900 CCATAAGCATCGGTAGCGCT 60.320 55.000 17.26 17.26 37.68 5.92
2369 3450 0.319555 TCCATAAGCATCGGTAGCGC 60.320 55.000 9.99 0.00 37.01 5.92
2370 3451 1.419374 GTCCATAAGCATCGGTAGCG 58.581 55.000 8.29 8.29 37.01 4.26
2371 3452 1.070134 TGGTCCATAAGCATCGGTAGC 59.930 52.381 0.00 0.00 0.00 3.58
2372 3453 3.685139 ATGGTCCATAAGCATCGGTAG 57.315 47.619 1.24 0.00 42.38 3.18
2379 3460 0.918258 TGGCAGATGGTCCATAAGCA 59.082 50.000 22.63 11.03 40.26 3.91
2380 3461 1.952296 CTTGGCAGATGGTCCATAAGC 59.048 52.381 16.19 16.19 31.54 3.09
2381 3462 2.579873 CCTTGGCAGATGGTCCATAAG 58.420 52.381 3.72 4.40 31.54 1.73
2382 3463 1.410083 GCCTTGGCAGATGGTCCATAA 60.410 52.381 3.72 0.00 31.54 1.90
2384 3465 1.076485 GCCTTGGCAGATGGTCCAT 60.076 57.895 3.26 3.26 31.54 3.41
2385 3466 2.356278 GCCTTGGCAGATGGTCCA 59.644 61.111 6.79 0.00 0.00 4.02
2386 3467 2.825836 CGCCTTGGCAGATGGTCC 60.826 66.667 12.45 0.00 0.00 4.46
2387 3468 2.825836 CCGCCTTGGCAGATGGTC 60.826 66.667 12.45 0.00 0.00 4.02
2396 3477 2.435586 CTGTCTCAGCCGCCTTGG 60.436 66.667 0.00 0.00 42.50 3.61
2405 3486 4.802424 CGTAGCTGGCTGTCTCAG 57.198 61.111 5.25 0.00 35.49 3.35
2428 3509 2.359850 TGCTGTTGTCGGCCATCC 60.360 61.111 2.24 0.00 44.62 3.51
2429 3510 3.044059 GCTGCTGTTGTCGGCCATC 62.044 63.158 2.24 0.00 44.62 3.51
2430 3511 3.058160 GCTGCTGTTGTCGGCCAT 61.058 61.111 2.24 0.00 44.62 4.40
2431 3512 4.560743 TGCTGCTGTTGTCGGCCA 62.561 61.111 2.24 0.00 44.62 5.36
2432 3513 3.259425 CTTGCTGCTGTTGTCGGCC 62.259 63.158 0.00 0.00 44.62 6.13
2433 3514 2.253452 CTTGCTGCTGTTGTCGGC 59.747 61.111 0.00 0.00 45.37 5.54
2434 3515 1.859427 ATGCTTGCTGCTGTTGTCGG 61.859 55.000 0.00 0.00 43.37 4.79
2435 3516 0.728129 CATGCTTGCTGCTGTTGTCG 60.728 55.000 0.00 0.00 43.37 4.35
2436 3517 0.313043 ACATGCTTGCTGCTGTTGTC 59.687 50.000 0.00 0.00 43.37 3.18
2437 3518 0.031585 CACATGCTTGCTGCTGTTGT 59.968 50.000 0.00 0.60 43.37 3.32
2438 3519 0.666274 CCACATGCTTGCTGCTGTTG 60.666 55.000 0.00 0.03 43.37 3.33
2439 3520 0.824595 TCCACATGCTTGCTGCTGTT 60.825 50.000 0.00 0.00 43.37 3.16
2440 3521 0.611062 ATCCACATGCTTGCTGCTGT 60.611 50.000 0.00 0.00 43.37 4.40
2441 3522 0.530744 AATCCACATGCTTGCTGCTG 59.469 50.000 0.00 0.00 43.37 4.41
2442 3523 1.203994 GAAATCCACATGCTTGCTGCT 59.796 47.619 0.00 0.00 43.37 4.24
2443 3524 1.203994 AGAAATCCACATGCTTGCTGC 59.796 47.619 0.00 0.00 43.25 5.25
2444 3525 2.159282 GGAGAAATCCACATGCTTGCTG 60.159 50.000 0.00 0.00 0.00 4.41
2445 3526 2.097825 GGAGAAATCCACATGCTTGCT 58.902 47.619 0.00 0.00 0.00 3.91
2446 3527 1.820519 TGGAGAAATCCACATGCTTGC 59.179 47.619 0.00 0.00 34.33 4.01
2447 3528 2.159282 GCTGGAGAAATCCACATGCTTG 60.159 50.000 0.00 0.00 35.63 4.01
2448 3529 2.097825 GCTGGAGAAATCCACATGCTT 58.902 47.619 0.00 0.00 35.63 3.91
2449 3530 1.005097 TGCTGGAGAAATCCACATGCT 59.995 47.619 8.05 0.00 35.63 3.79
2450 3531 1.466856 TGCTGGAGAAATCCACATGC 58.533 50.000 0.00 0.00 35.63 4.06
2451 3532 5.125900 TGTTAATGCTGGAGAAATCCACATG 59.874 40.000 10.85 0.00 34.32 3.21
2452 3533 5.263599 TGTTAATGCTGGAGAAATCCACAT 58.736 37.500 0.00 0.58 35.63 3.21
2453 3534 4.661222 TGTTAATGCTGGAGAAATCCACA 58.339 39.130 0.00 0.00 35.63 4.17
2454 3535 5.591877 AGATGTTAATGCTGGAGAAATCCAC 59.408 40.000 0.00 0.00 35.63 4.02
2455 3536 5.591472 CAGATGTTAATGCTGGAGAAATCCA 59.409 40.000 0.00 0.00 38.25 3.41
2456 3537 5.591877 ACAGATGTTAATGCTGGAGAAATCC 59.408 40.000 0.00 0.00 34.05 3.01
2457 3538 6.459298 CCACAGATGTTAATGCTGGAGAAATC 60.459 42.308 0.00 0.00 34.05 2.17
2458 3539 5.359009 CCACAGATGTTAATGCTGGAGAAAT 59.641 40.000 0.00 0.00 34.05 2.17
2487 3568 4.632153 GAAGCTACTGTTGTTCTCTGGAA 58.368 43.478 0.00 0.00 0.00 3.53
2488 3569 3.305403 CGAAGCTACTGTTGTTCTCTGGA 60.305 47.826 0.00 0.00 0.00 3.86
2489 3570 2.989840 CGAAGCTACTGTTGTTCTCTGG 59.010 50.000 0.00 0.00 0.00 3.86
2506 3587 3.276857 TCTACCTACAGTACCAGCGAAG 58.723 50.000 0.00 0.00 0.00 3.79
2507 3588 3.354948 TCTACCTACAGTACCAGCGAA 57.645 47.619 0.00 0.00 0.00 4.70
2509 3590 3.015327 AGTTCTACCTACAGTACCAGCG 58.985 50.000 0.00 0.00 0.00 5.18
2510 3591 3.762823 ACAGTTCTACCTACAGTACCAGC 59.237 47.826 0.00 0.00 0.00 4.85
2512 3593 5.251468 TCCTACAGTTCTACCTACAGTACCA 59.749 44.000 0.00 0.00 0.00 3.25
2513 3594 5.749462 TCCTACAGTTCTACCTACAGTACC 58.251 45.833 0.00 0.00 0.00 3.34
2514 3595 5.296531 GCTCCTACAGTTCTACCTACAGTAC 59.703 48.000 0.00 0.00 0.00 2.73
2515 3596 5.435291 GCTCCTACAGTTCTACCTACAGTA 58.565 45.833 0.00 0.00 0.00 2.74
2516 3597 4.271661 GCTCCTACAGTTCTACCTACAGT 58.728 47.826 0.00 0.00 0.00 3.55
2517 3598 3.312973 CGCTCCTACAGTTCTACCTACAG 59.687 52.174 0.00 0.00 0.00 2.74
2518 3599 3.054875 TCGCTCCTACAGTTCTACCTACA 60.055 47.826 0.00 0.00 0.00 2.74
2520 3601 3.920231 TCGCTCCTACAGTTCTACCTA 57.080 47.619 0.00 0.00 0.00 3.08
2522 3603 3.243468 GGATTCGCTCCTACAGTTCTACC 60.243 52.174 0.00 0.00 41.29 3.18
2523 3604 3.967401 GGATTCGCTCCTACAGTTCTAC 58.033 50.000 0.00 0.00 41.29 2.59
2534 3615 2.147150 GGAAATGCTAGGATTCGCTCC 58.853 52.381 10.17 9.84 45.33 4.70
2537 3618 2.033424 GGTTGGAAATGCTAGGATTCGC 59.967 50.000 10.17 5.69 0.00 4.70
2539 3620 5.594926 CAATGGTTGGAAATGCTAGGATTC 58.405 41.667 10.17 4.22 0.00 2.52
2540 3621 5.603170 CAATGGTTGGAAATGCTAGGATT 57.397 39.130 3.24 3.24 0.00 3.01
2558 3639 5.628130 ACCATTGATAGAGTCCATCCAATG 58.372 41.667 13.67 13.67 0.00 2.82
2559 3640 5.919348 ACCATTGATAGAGTCCATCCAAT 57.081 39.130 0.00 0.00 0.00 3.16
2561 3642 4.721274 TGAACCATTGATAGAGTCCATCCA 59.279 41.667 0.00 0.00 0.00 3.41
2563 3644 5.163258 ACCTGAACCATTGATAGAGTCCATC 60.163 44.000 0.00 0.00 0.00 3.51
2564 3645 4.723789 ACCTGAACCATTGATAGAGTCCAT 59.276 41.667 0.00 0.00 0.00 3.41
2565 3646 4.104086 ACCTGAACCATTGATAGAGTCCA 58.896 43.478 0.00 0.00 0.00 4.02
2566 3647 4.762289 ACCTGAACCATTGATAGAGTCC 57.238 45.455 0.00 0.00 0.00 3.85
2567 3648 4.333926 GCAACCTGAACCATTGATAGAGTC 59.666 45.833 0.00 0.00 0.00 3.36
2569 3650 4.521146 AGCAACCTGAACCATTGATAGAG 58.479 43.478 0.00 0.00 0.00 2.43
2570 3651 4.574674 AGCAACCTGAACCATTGATAGA 57.425 40.909 0.00 0.00 0.00 1.98
2571 3652 4.096984 GGAAGCAACCTGAACCATTGATAG 59.903 45.833 0.00 0.00 0.00 2.08
2572 3653 4.016444 GGAAGCAACCTGAACCATTGATA 58.984 43.478 0.00 0.00 0.00 2.15
2573 3654 2.827921 GGAAGCAACCTGAACCATTGAT 59.172 45.455 0.00 0.00 0.00 2.57
2574 3655 2.158475 AGGAAGCAACCTGAACCATTGA 60.158 45.455 0.90 0.00 39.01 2.57
2575 3656 2.242043 AGGAAGCAACCTGAACCATTG 58.758 47.619 0.90 0.00 39.01 2.82
2576 3657 2.683211 AGGAAGCAACCTGAACCATT 57.317 45.000 0.90 0.00 39.01 3.16
2577 3658 2.644798 ACTAGGAAGCAACCTGAACCAT 59.355 45.455 11.19 0.00 40.81 3.55
2578 3659 2.038557 GACTAGGAAGCAACCTGAACCA 59.961 50.000 11.19 0.00 40.81 3.67
2579 3660 2.038557 TGACTAGGAAGCAACCTGAACC 59.961 50.000 11.19 0.00 40.81 3.62
2580 3661 3.402628 TGACTAGGAAGCAACCTGAAC 57.597 47.619 11.19 4.08 40.81 3.18
2581 3662 3.582647 TCATGACTAGGAAGCAACCTGAA 59.417 43.478 11.19 0.00 40.81 3.02
2582 3663 3.173151 TCATGACTAGGAAGCAACCTGA 58.827 45.455 11.19 0.00 40.81 3.86
2583 3664 3.196469 TCTCATGACTAGGAAGCAACCTG 59.804 47.826 11.19 5.04 40.81 4.00
2584 3665 3.445008 TCTCATGACTAGGAAGCAACCT 58.555 45.455 6.90 6.90 43.32 3.50
2585 3666 3.895232 TCTCATGACTAGGAAGCAACC 57.105 47.619 0.00 0.00 0.00 3.77
2586 3667 5.423015 TGAATCTCATGACTAGGAAGCAAC 58.577 41.667 0.00 0.00 0.00 4.17
2587 3668 5.682234 TGAATCTCATGACTAGGAAGCAA 57.318 39.130 0.00 0.00 0.00 3.91
2588 3669 5.682234 TTGAATCTCATGACTAGGAAGCA 57.318 39.130 0.00 0.00 0.00 3.91
2589 3670 6.992063 TTTTGAATCTCATGACTAGGAAGC 57.008 37.500 0.00 0.00 0.00 3.86
2591 3672 9.519191 TGAAATTTTGAATCTCATGACTAGGAA 57.481 29.630 0.00 0.00 0.00 3.36
2592 3673 9.519191 TTGAAATTTTGAATCTCATGACTAGGA 57.481 29.630 0.00 0.00 0.00 2.94
2598 3679 9.263538 CCAGTTTTGAAATTTTGAATCTCATGA 57.736 29.630 0.00 0.00 0.00 3.07
2599 3680 9.048446 ACCAGTTTTGAAATTTTGAATCTCATG 57.952 29.630 0.00 0.00 0.00 3.07
2601 3682 9.528018 GTACCAGTTTTGAAATTTTGAATCTCA 57.472 29.630 0.00 0.00 0.00 3.27
2602 3683 9.528018 TGTACCAGTTTTGAAATTTTGAATCTC 57.472 29.630 0.00 0.00 0.00 2.75
2603 3684 9.313118 GTGTACCAGTTTTGAAATTTTGAATCT 57.687 29.630 0.00 0.00 0.00 2.40
2604 3685 9.313118 AGTGTACCAGTTTTGAAATTTTGAATC 57.687 29.630 0.00 0.00 0.00 2.52
2607 3688 9.743057 CATAGTGTACCAGTTTTGAAATTTTGA 57.257 29.630 0.00 0.00 0.00 2.69
2608 3689 9.528018 ACATAGTGTACCAGTTTTGAAATTTTG 57.472 29.630 0.00 0.00 0.00 2.44
2611 3692 9.569122 ACTACATAGTGTACCAGTTTTGAAATT 57.431 29.630 0.00 0.00 34.72 1.82
2613 3694 9.701098 CTACTACATAGTGTACCAGTTTTGAAA 57.299 33.333 1.66 0.00 37.10 2.69
2614 3695 8.863086 ACTACTACATAGTGTACCAGTTTTGAA 58.137 33.333 1.66 0.00 42.90 2.69
2615 3696 8.413309 ACTACTACATAGTGTACCAGTTTTGA 57.587 34.615 1.66 0.00 42.90 2.69
2698 3780 7.164122 TCTGACTTGAAGCAGATAGTTCAAAT 58.836 34.615 12.92 0.00 41.07 2.32
3233 4687 7.977789 TCTACAAGTGACAAAATGAGCAATA 57.022 32.000 0.00 0.00 0.00 1.90
3257 4711 2.158769 TGTCACATGCAACAGGACTCTT 60.159 45.455 0.00 0.00 0.00 2.85
3365 4823 5.408299 CGTACCAACAGAAGTGATCATGAAA 59.592 40.000 0.00 0.00 0.00 2.69
3366 4824 4.929211 CGTACCAACAGAAGTGATCATGAA 59.071 41.667 0.00 0.00 0.00 2.57
3532 5153 4.202050 ACACCTGCTGTCAAATTCAAAGAC 60.202 41.667 0.00 0.00 0.00 3.01
3655 5284 5.505489 GGCATTACAAAAACAAAAGGCCAAG 60.505 40.000 5.01 0.00 45.54 3.61
3681 5310 3.745975 TGCATAAGAAGTCAAACGACCAG 59.254 43.478 0.00 0.00 33.60 4.00
3737 5366 1.601759 CCACCACCACTGCTTCAGG 60.602 63.158 0.00 0.00 35.51 3.86
3744 5373 1.882352 GCCTCTTAACCACCACCACTG 60.882 57.143 0.00 0.00 0.00 3.66
3745 5374 0.400594 GCCTCTTAACCACCACCACT 59.599 55.000 0.00 0.00 0.00 4.00
3748 5377 2.038837 GCGCCTCTTAACCACCACC 61.039 63.158 0.00 0.00 0.00 4.61
3749 5378 1.003718 AGCGCCTCTTAACCACCAC 60.004 57.895 2.29 0.00 0.00 4.16
3750 5379 1.295423 GAGCGCCTCTTAACCACCA 59.705 57.895 2.29 0.00 0.00 4.17
3751 5380 1.810030 CGAGCGCCTCTTAACCACC 60.810 63.158 2.29 0.00 0.00 4.61
3752 5381 1.080025 ACGAGCGCCTCTTAACCAC 60.080 57.895 2.29 0.00 0.00 4.16
3753 5382 1.080093 CACGAGCGCCTCTTAACCA 60.080 57.895 2.29 0.00 0.00 3.67
3754 5383 1.810030 CCACGAGCGCCTCTTAACC 60.810 63.158 2.29 0.00 0.00 2.85
3755 5384 1.080025 ACCACGAGCGCCTCTTAAC 60.080 57.895 2.29 0.00 0.00 2.01
3756 5385 1.080093 CACCACGAGCGCCTCTTAA 60.080 57.895 2.29 0.00 0.00 1.85
3757 5386 2.571757 CACCACGAGCGCCTCTTA 59.428 61.111 2.29 0.00 0.00 2.10
3862 5491 8.557592 ACCAATACATCACAATAGCATATCTG 57.442 34.615 0.00 0.00 0.00 2.90
3892 5521 2.295253 TAAGCTTACCTTGCTCGAGC 57.705 50.000 30.42 30.42 40.22 5.03
3893 5522 2.930682 GGTTAAGCTTACCTTGCTCGAG 59.069 50.000 8.45 8.45 40.22 4.04
3923 5552 3.406764 ACAGTTCAGATGCCTCAACTTC 58.593 45.455 0.00 0.00 0.00 3.01
4045 5674 0.111253 GGCTGCTAGGTGGGCAATAT 59.889 55.000 0.00 0.00 39.30 1.28
4209 5847 6.183360 CGAACCACCAATGAAGAAAGAGTATC 60.183 42.308 0.00 0.00 0.00 2.24
4234 5872 1.621814 TCTACCAGCACCCACTTACAC 59.378 52.381 0.00 0.00 0.00 2.90
4413 6326 5.202765 AGGATGCAAACATATGGTTCATCA 58.797 37.500 28.03 18.09 40.15 3.07
4418 6332 7.727186 AGATGATAAGGATGCAAACATATGGTT 59.273 33.333 7.80 3.38 42.98 3.67
4546 6463 2.697654 AGATCTTCACTCAAGCTGCAC 58.302 47.619 1.02 0.00 31.26 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.