Multiple sequence alignment - TraesCS6B01G101600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G101600 chr6B 100.000 3558 0 0 959 4516 79846965 79850522 0.000000e+00 6571.0
1 TraesCS6B01G101600 chr6B 100.000 632 0 0 1 632 79846007 79846638 0.000000e+00 1168.0
2 TraesCS6B01G101600 chr6B 94.620 632 29 3 1 632 158141084 158141710 0.000000e+00 974.0
3 TraesCS6B01G101600 chr6B 74.954 1617 314 67 960 2523 79555908 79554330 0.000000e+00 658.0
4 TraesCS6B01G101600 chr6B 74.830 1617 315 67 960 2523 79438415 79436838 0.000000e+00 647.0
5 TraesCS6B01G101600 chr6B 75.789 1330 246 54 1014 2306 60593806 60595096 1.800000e-168 603.0
6 TraesCS6B01G101600 chr6B 74.676 1544 299 64 1029 2523 79642159 79640659 6.460000e-168 601.0
7 TraesCS6B01G101600 chr6B 73.619 1213 260 42 1019 2206 79275377 79276554 3.250000e-111 412.0
8 TraesCS6B01G101600 chr6B 73.368 1164 248 42 1035 2177 77391481 77392603 4.270000e-100 375.0
9 TraesCS6B01G101600 chr6B 71.949 1180 251 56 1415 2559 82544223 82543089 5.760000e-69 272.0
10 TraesCS6B01G101600 chr6B 83.636 275 31 6 979 1250 75514637 75514374 3.490000e-61 246.0
11 TraesCS6B01G101600 chr6B 76.569 478 72 23 3202 3669 82161719 82162166 4.550000e-55 226.0
12 TraesCS6B01G101600 chr6B 76.802 444 74 18 3238 3669 82008268 82008694 5.880000e-54 222.0
13 TraesCS6B01G101600 chr6B 80.220 182 25 8 2667 2845 62127289 62127462 4.740000e-25 126.0
14 TraesCS6B01G101600 chr6B 79.310 145 25 2 2698 2840 54150378 54150519 3.720000e-16 97.1
15 TraesCS6B01G101600 chr6B 75.349 215 40 7 2663 2871 51310258 51310051 1.730000e-14 91.6
16 TraesCS6B01G101600 chr6A 91.040 2020 96 27 959 2953 46716864 46714905 0.000000e+00 2649.0
17 TraesCS6B01G101600 chr6A 91.254 1555 82 14 2986 4505 46714906 46713371 0.000000e+00 2069.0
18 TraesCS6B01G101600 chr6A 73.581 1374 286 58 1006 2338 34029170 34030507 5.330000e-124 455.0
19 TraesCS6B01G101600 chr6A 75.991 908 136 36 3184 4049 34180405 34181272 1.180000e-105 394.0
20 TraesCS6B01G101600 chr6A 77.068 689 138 15 1692 2375 34178873 34179546 3.300000e-101 379.0
21 TraesCS6B01G101600 chr6A 77.027 592 100 24 1038 1614 34009352 34009922 1.580000e-79 307.0
22 TraesCS6B01G101600 chr6A 79.470 453 70 15 1015 1458 46054455 46054893 2.640000e-77 300.0
23 TraesCS6B01G101600 chr6A 77.538 463 83 15 1024 1480 46296473 46296026 4.480000e-65 259.0
24 TraesCS6B01G101600 chr6A 77.167 473 89 17 1926 2388 47542164 47541701 1.610000e-64 257.0
25 TraesCS6B01G101600 chr6A 76.888 437 64 29 2719 3129 45980106 45979681 3.540000e-51 213.0
26 TraesCS6B01G101600 chr6A 78.788 198 31 7 2668 2862 34030863 34031052 6.130000e-24 122.0
27 TraesCS6B01G101600 chrUn 89.159 1522 126 18 1038 2534 27447726 27449233 0.000000e+00 1860.0
28 TraesCS6B01G101600 chrUn 84.885 1171 132 24 959 2116 27364805 27365943 0.000000e+00 1140.0
29 TraesCS6B01G101600 chrUn 81.685 1436 143 50 2742 4112 27369918 27371298 0.000000e+00 1085.0
30 TraesCS6B01G101600 chrUn 74.799 1496 286 58 1011 2471 112677019 112678458 1.400000e-164 590.0
31 TraesCS6B01G101600 chrUn 87.738 367 28 2 4139 4505 27458526 27458875 3.250000e-111 412.0
32 TraesCS6B01G101600 chrUn 82.480 508 39 12 2317 2802 27449229 27449708 2.530000e-107 399.0
33 TraesCS6B01G101600 chrUn 77.378 694 135 16 1688 2375 101886748 101887425 4.240000e-105 392.0
34 TraesCS6B01G101600 chrUn 86.301 365 15 11 2405 2767 27366276 27366607 9.230000e-97 364.0
35 TraesCS6B01G101600 chrUn 84.281 299 41 2 2024 2322 27365941 27366233 2.060000e-73 287.0
36 TraesCS6B01G101600 chrUn 76.966 356 56 18 3238 3584 27076579 27076917 3.590000e-41 180.0
37 TraesCS6B01G101600 chrUn 76.923 299 51 16 2746 3035 112650638 112650927 2.180000e-33 154.0
38 TraesCS6B01G101600 chr7B 94.937 632 26 4 1 632 51901127 51900502 0.000000e+00 985.0
39 TraesCS6B01G101600 chr4A 94.505 637 27 5 1 632 603495127 603494494 0.000000e+00 976.0
40 TraesCS6B01G101600 chr5A 93.553 636 34 4 1 632 668166411 668167043 0.000000e+00 941.0
41 TraesCS6B01G101600 chr3B 94.156 616 31 4 1 616 776868737 776869347 0.000000e+00 933.0
42 TraesCS6B01G101600 chr1D 93.146 642 34 4 1 632 19427923 19427282 0.000000e+00 933.0
43 TraesCS6B01G101600 chr7A 94.023 619 30 5 1 615 19815454 19814839 0.000000e+00 931.0
44 TraesCS6B01G101600 chr5B 93.260 638 33 8 1 632 559400978 559400345 0.000000e+00 931.0
45 TraesCS6B01G101600 chr5B 70.903 1495 324 82 1076 2521 697030633 697029201 9.700000e-62 248.0
46 TraesCS6B01G101600 chr5B 78.539 219 33 10 3804 4013 697085061 697084848 1.020000e-26 132.0
47 TraesCS6B01G101600 chr4B 93.060 634 38 4 1 632 12009130 12008501 0.000000e+00 922.0
48 TraesCS6B01G101600 chr6D 74.000 1350 268 64 1009 2313 28658346 28657035 5.290000e-129 472.0
49 TraesCS6B01G101600 chr6D 89.604 202 21 0 1041 1242 35886245 35886044 1.610000e-64 257.0
50 TraesCS6B01G101600 chr6D 79.487 195 29 7 2671 2862 28656644 28656458 1.320000e-25 128.0
51 TraesCS6B01G101600 chr6D 82.308 130 16 4 2742 2868 27533427 27533302 6.180000e-19 106.0
52 TraesCS6B01G101600 chr5D 78.134 343 49 16 3683 4013 553761331 553761659 1.280000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G101600 chr6B 79846007 79850522 4515 False 3869.5 6571 100.0000 1 4516 2 chr6B.!!$F9 4515
1 TraesCS6B01G101600 chr6B 158141084 158141710 626 False 974.0 974 94.6200 1 632 1 chr6B.!!$F8 631
2 TraesCS6B01G101600 chr6B 79554330 79555908 1578 True 658.0 658 74.9540 960 2523 1 chr6B.!!$R4 1563
3 TraesCS6B01G101600 chr6B 79436838 79438415 1577 True 647.0 647 74.8300 960 2523 1 chr6B.!!$R3 1563
4 TraesCS6B01G101600 chr6B 60593806 60595096 1290 False 603.0 603 75.7890 1014 2306 1 chr6B.!!$F2 1292
5 TraesCS6B01G101600 chr6B 79640659 79642159 1500 True 601.0 601 74.6760 1029 2523 1 chr6B.!!$R5 1494
6 TraesCS6B01G101600 chr6B 79275377 79276554 1177 False 412.0 412 73.6190 1019 2206 1 chr6B.!!$F5 1187
7 TraesCS6B01G101600 chr6B 77391481 77392603 1122 False 375.0 375 73.3680 1035 2177 1 chr6B.!!$F4 1142
8 TraesCS6B01G101600 chr6B 82543089 82544223 1134 True 272.0 272 71.9490 1415 2559 1 chr6B.!!$R6 1144
9 TraesCS6B01G101600 chr6A 46713371 46716864 3493 True 2359.0 2649 91.1470 959 4505 2 chr6A.!!$R4 3546
10 TraesCS6B01G101600 chr6A 34178873 34181272 2399 False 386.5 394 76.5295 1692 4049 2 chr6A.!!$F4 2357
11 TraesCS6B01G101600 chr6A 34009352 34009922 570 False 307.0 307 77.0270 1038 1614 1 chr6A.!!$F1 576
12 TraesCS6B01G101600 chr6A 34029170 34031052 1882 False 288.5 455 76.1845 1006 2862 2 chr6A.!!$F3 1856
13 TraesCS6B01G101600 chrUn 27447726 27449708 1982 False 1129.5 1860 85.8195 1038 2802 2 chrUn.!!$F7 1764
14 TraesCS6B01G101600 chrUn 27364805 27371298 6493 False 719.0 1140 84.2880 959 4112 4 chrUn.!!$F6 3153
15 TraesCS6B01G101600 chrUn 112677019 112678458 1439 False 590.0 590 74.7990 1011 2471 1 chrUn.!!$F5 1460
16 TraesCS6B01G101600 chrUn 101886748 101887425 677 False 392.0 392 77.3780 1688 2375 1 chrUn.!!$F3 687
17 TraesCS6B01G101600 chr7B 51900502 51901127 625 True 985.0 985 94.9370 1 632 1 chr7B.!!$R1 631
18 TraesCS6B01G101600 chr4A 603494494 603495127 633 True 976.0 976 94.5050 1 632 1 chr4A.!!$R1 631
19 TraesCS6B01G101600 chr5A 668166411 668167043 632 False 941.0 941 93.5530 1 632 1 chr5A.!!$F1 631
20 TraesCS6B01G101600 chr3B 776868737 776869347 610 False 933.0 933 94.1560 1 616 1 chr3B.!!$F1 615
21 TraesCS6B01G101600 chr1D 19427282 19427923 641 True 933.0 933 93.1460 1 632 1 chr1D.!!$R1 631
22 TraesCS6B01G101600 chr7A 19814839 19815454 615 True 931.0 931 94.0230 1 615 1 chr7A.!!$R1 614
23 TraesCS6B01G101600 chr5B 559400345 559400978 633 True 931.0 931 93.2600 1 632 1 chr5B.!!$R1 631
24 TraesCS6B01G101600 chr5B 697029201 697030633 1432 True 248.0 248 70.9030 1076 2521 1 chr5B.!!$R2 1445
25 TraesCS6B01G101600 chr4B 12008501 12009130 629 True 922.0 922 93.0600 1 632 1 chr4B.!!$R1 631
26 TraesCS6B01G101600 chr6D 28656458 28658346 1888 True 300.0 472 76.7435 1009 2862 2 chr6D.!!$R3 1853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 335 0.792640 CTGACGAAGCAAATCACGCT 59.207 50.000 0.00 0.00 42.98 5.07 F
1410 1476 1.081641 CGTCTACCACGCGTCTTGT 60.082 57.895 9.86 9.99 42.87 3.16 F
2019 2178 1.195442 TGCCCGTTGTGATACTGGGA 61.195 55.000 0.00 0.00 42.77 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2129 2387 1.265635 CACTTTCGAATGGGCGACAAA 59.734 47.619 14.74 0.0 40.42 2.83 R
3193 7259 4.640771 TTAACTGGTCAGAAGAGGCAAT 57.359 40.909 4.84 0.0 0.00 3.56 R
3532 7607 0.390603 GTACACCACGGCAGCATACA 60.391 55.000 0.00 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.096003 CCCCGCACCCTTGACGAT 62.096 66.667 0.00 0.00 0.00 3.73
327 335 0.792640 CTGACGAAGCAAATCACGCT 59.207 50.000 0.00 0.00 42.98 5.07
570 588 3.216371 AGGAAGGGGGTGGAGGGA 61.216 66.667 0.00 0.00 0.00 4.20
1007 1040 4.881440 ACATCCCCGCATGCGCAT 62.881 61.111 34.00 19.28 38.40 4.73
1410 1476 1.081641 CGTCTACCACGCGTCTTGT 60.082 57.895 9.86 9.99 42.87 3.16
1673 1799 4.233635 GGCTTCAGCGAGCATGCG 62.234 66.667 13.01 0.00 44.49 4.73
2019 2178 1.195442 TGCCCGTTGTGATACTGGGA 61.195 55.000 0.00 0.00 42.77 4.37
2109 2277 6.321181 AGTCATTGCAGTCCAAGAAACTTTTA 59.679 34.615 0.00 0.00 36.76 1.52
2478 3096 5.738619 TGGTCTACTGTCAGCTTCATTTA 57.261 39.130 0.00 0.00 0.00 1.40
2874 6898 9.167311 CCTGTTAATCTTGCTACTAAATTCAGT 57.833 33.333 0.00 0.00 0.00 3.41
2876 6900 9.719355 TGTTAATCTTGCTACTAAATTCAGTCA 57.281 29.630 0.00 0.00 0.00 3.41
2938 6984 2.500098 TCCCTAGCACGAGTAGCAAATT 59.500 45.455 0.00 0.00 0.00 1.82
2956 7002 5.994668 GCAAATTCATTTGTACCAGGGAAAA 59.005 36.000 12.71 0.00 46.63 2.29
3050 7096 9.294030 CTTGATCACTTTTATTGCTATGGTTTC 57.706 33.333 0.00 0.00 0.00 2.78
3168 7234 6.587206 TTTGTTTATTCTGATGTGCCATGA 57.413 33.333 0.00 0.00 0.00 3.07
3211 7277 3.515602 AAATTGCCTCTTCTGACCAGT 57.484 42.857 0.00 0.00 0.00 4.00
3217 7290 5.755409 TGCCTCTTCTGACCAGTTAATAA 57.245 39.130 0.00 0.00 0.00 1.40
3221 7294 7.051000 GCCTCTTCTGACCAGTTAATAATCTT 58.949 38.462 0.00 0.00 0.00 2.40
3235 7308 9.890629 AGTTAATAATCTTGAGTGTGCATCTTA 57.109 29.630 0.00 0.00 0.00 2.10
3566 7641 3.195610 TGGTGTACTGATTGAGCAGGTAG 59.804 47.826 1.02 0.00 40.20 3.18
3743 7855 4.396357 TTTTATCTTTCTTCCAGGCCCA 57.604 40.909 0.00 0.00 0.00 5.36
3759 7871 1.618074 GCCCAGCTTCCTCATCCTTTT 60.618 52.381 0.00 0.00 0.00 2.27
3760 7872 2.097825 CCCAGCTTCCTCATCCTTTTG 58.902 52.381 0.00 0.00 0.00 2.44
3794 7906 5.235186 CAGCAACTCTATATTCCCTTTCACG 59.765 44.000 0.00 0.00 0.00 4.35
3840 7953 6.083630 TCTTTTATTTGCTGATGTTGTACGC 58.916 36.000 0.00 0.00 0.00 4.42
3865 7978 4.946157 CCTCACTATTGGATGTGCTCTTTT 59.054 41.667 0.00 0.00 34.49 2.27
3867 7980 5.316167 TCACTATTGGATGTGCTCTTTTGT 58.684 37.500 0.00 0.00 34.49 2.83
3870 7983 6.364165 CACTATTGGATGTGCTCTTTTGTTTG 59.636 38.462 0.00 0.00 0.00 2.93
3876 7989 2.760092 TGTGCTCTTTTGTTTGCCTTCT 59.240 40.909 0.00 0.00 0.00 2.85
3877 7990 3.195396 TGTGCTCTTTTGTTTGCCTTCTT 59.805 39.130 0.00 0.00 0.00 2.52
3966 8093 4.230964 AGTTTCTTCTCCCTCTAGCTCCTA 59.769 45.833 0.00 0.00 0.00 2.94
3985 8112 6.629068 GCTCCTAAGATGAACTGATGACTTGA 60.629 42.308 0.00 0.00 0.00 3.02
4001 8155 1.807142 CTTGAGACCCTTCCGCTTTTC 59.193 52.381 0.00 0.00 0.00 2.29
4015 8169 3.783943 CCGCTTTTCGTGCATATGTTAAC 59.216 43.478 4.29 0.00 36.19 2.01
4075 8229 8.738106 TCTGCATTTGATTTCCTTTTTGTTTTT 58.262 25.926 0.00 0.00 0.00 1.94
4134 8288 4.777896 TGGGGTTATGCATCTATCTAGTCC 59.222 45.833 0.19 0.00 0.00 3.85
4171 8325 6.560253 ATGTAGTTTCCTTTGTGCAAGTAG 57.440 37.500 0.00 0.00 0.00 2.57
4172 8326 5.433526 TGTAGTTTCCTTTGTGCAAGTAGT 58.566 37.500 0.00 0.00 0.00 2.73
4211 8365 6.804677 ACATGAACATTTGCTTCACACTTTA 58.195 32.000 0.00 0.00 30.46 1.85
4356 8510 6.092748 ACCAATTAGTATCTTTTTGCTTGCG 58.907 36.000 0.00 0.00 0.00 4.85
4372 8526 4.862018 TGCTTGCGGCTATTGAAATTTTAC 59.138 37.500 0.00 0.00 42.39 2.01
4425 8579 4.026145 GCTTAAACGATCAGCATCTCTCAC 60.026 45.833 0.00 0.00 33.45 3.51
4458 8612 4.399004 TTTGCATATGTAATTGGCCACC 57.601 40.909 3.88 0.00 0.00 4.61
4505 8659 6.102663 GTCCAAGGTATATGTAGCTATGCTG 58.897 44.000 1.31 0.00 40.10 4.41
4506 8660 5.187772 TCCAAGGTATATGTAGCTATGCTGG 59.812 44.000 9.63 9.63 40.10 4.85
4507 8661 5.423015 CAAGGTATATGTAGCTATGCTGGG 58.577 45.833 1.31 0.00 40.10 4.45
4508 8662 3.452627 AGGTATATGTAGCTATGCTGGGC 59.547 47.826 0.00 0.00 40.10 5.36
4509 8663 3.197766 GGTATATGTAGCTATGCTGGGCA 59.802 47.826 0.00 0.00 44.86 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 106 1.915078 CGAGGTCCCCTGCTTTCCAT 61.915 60.000 0.00 0.00 31.76 3.41
593 611 3.711059 GACTCGGGGGCGACTAGGA 62.711 68.421 0.00 0.00 0.00 2.94
1007 1040 0.324738 ACTCATCTCGCCCTCCTCAA 60.325 55.000 0.00 0.00 0.00 3.02
1236 1272 1.482593 CCTATGTGAAGGAAGCCGAGT 59.517 52.381 0.00 0.00 39.15 4.18
1410 1476 2.626785 TCCCACACCAGGATCTGTTTA 58.373 47.619 0.00 0.00 0.00 2.01
1467 1533 1.347707 TCATCTCTCGCAAACCTTGGT 59.652 47.619 0.00 0.00 0.00 3.67
1673 1799 2.287608 GCGGCCTTACATGAAATAAGCC 60.288 50.000 0.00 2.93 0.00 4.35
1681 1807 1.745115 GCACAGCGGCCTTACATGA 60.745 57.895 0.00 0.00 0.00 3.07
2019 2178 3.962718 CCCCATTATTGTCCTCAGCAAAT 59.037 43.478 0.00 0.00 0.00 2.32
2129 2387 1.265635 CACTTTCGAATGGGCGACAAA 59.734 47.619 14.74 0.00 40.42 2.83
2135 2393 2.415512 GTGTAGACACTTTCGAATGGGC 59.584 50.000 12.85 6.44 43.25 5.36
2167 2425 6.655078 AAACCCAATATATGAAGGCATGTC 57.345 37.500 0.00 0.00 35.94 3.06
2334 2805 9.911788 ACAAGAATCAGAACAGGAATATTACAT 57.088 29.630 0.00 0.00 0.00 2.29
2565 3223 9.241919 TGGTGTTCATTGTTCTATTGTATGAAT 57.758 29.630 0.00 0.00 37.50 2.57
2566 3224 8.628630 TGGTGTTCATTGTTCTATTGTATGAA 57.371 30.769 0.00 0.00 34.00 2.57
2567 3225 8.628630 TTGGTGTTCATTGTTCTATTGTATGA 57.371 30.769 0.00 0.00 0.00 2.15
2568 3226 8.729756 TCTTGGTGTTCATTGTTCTATTGTATG 58.270 33.333 0.00 0.00 0.00 2.39
2845 6869 9.174166 GAATTTAGTAGCAAGATTAACAGGGAA 57.826 33.333 0.00 0.00 0.00 3.97
2938 6984 6.739331 ATTTGTTTTCCCTGGTACAAATGA 57.261 33.333 17.81 0.00 44.83 2.57
3193 7259 4.640771 TTAACTGGTCAGAAGAGGCAAT 57.359 40.909 4.84 0.00 0.00 3.56
3217 7290 7.876936 AATGATTAAGATGCACACTCAAGAT 57.123 32.000 0.00 0.00 0.00 2.40
3221 7294 9.844790 CTTAAAAATGATTAAGATGCACACTCA 57.155 29.630 0.00 0.00 42.77 3.41
3273 7347 9.423061 GCCTACTGTCAAATTTAATGAACATTT 57.577 29.630 5.37 0.00 32.50 2.32
3277 7352 7.542130 CCAAGCCTACTGTCAAATTTAATGAAC 59.458 37.037 0.00 0.00 0.00 3.18
3532 7607 0.390603 GTACACCACGGCAGCATACA 60.391 55.000 0.00 0.00 0.00 2.29
3620 7703 9.097257 CTTGAGAAATGGCAGTAAAAAGAAAAA 57.903 29.630 0.00 0.00 0.00 1.94
3733 7845 2.532715 AGGAAGCTGGGCCTGGAA 60.533 61.111 12.70 0.00 32.06 3.53
3743 7855 2.165998 GCACAAAAGGATGAGGAAGCT 58.834 47.619 0.00 0.00 0.00 3.74
3759 7871 1.072806 AGAGTTGCTGATGAAGGCACA 59.927 47.619 0.00 0.00 38.23 4.57
3760 7872 1.818642 AGAGTTGCTGATGAAGGCAC 58.181 50.000 0.00 0.00 38.23 5.01
3794 7906 1.002502 GGTAGGTGGGTGAAGGCAC 60.003 63.158 0.00 0.00 44.39 5.01
3840 7953 1.492176 AGCACATCCAATAGTGAGGGG 59.508 52.381 0.00 0.00 37.97 4.79
3865 7978 3.703556 TGGATGAACAAAGAAGGCAAACA 59.296 39.130 0.00 0.00 0.00 2.83
3867 7980 3.960102 ACTGGATGAACAAAGAAGGCAAA 59.040 39.130 0.00 0.00 0.00 3.68
3870 7983 3.858503 GCAACTGGATGAACAAAGAAGGC 60.859 47.826 0.00 0.00 0.00 4.35
3966 8093 5.486526 GGTCTCAAGTCATCAGTTCATCTT 58.513 41.667 0.00 0.00 0.00 2.40
3985 8112 0.602905 CACGAAAAGCGGAAGGGTCT 60.603 55.000 0.00 0.00 46.49 3.85
4001 8155 5.463499 TGCTAACAGTTAACATATGCACG 57.537 39.130 8.61 0.00 0.00 5.34
4075 8229 3.431922 GCATGTAGCGACTGGTAGTAA 57.568 47.619 0.00 0.00 0.00 2.24
4211 8365 8.995027 TGACATAGTCATAAGCCCATTTAAAT 57.005 30.769 0.00 0.00 37.67 1.40
4231 8385 4.530710 AAGCAGCAATGTGAAATGACAT 57.469 36.364 0.00 0.00 38.23 3.06
4232 8386 5.416639 AGATAAGCAGCAATGTGAAATGACA 59.583 36.000 0.00 0.00 0.00 3.58
4354 8508 5.243426 TCCAGTAAAATTTCAATAGCCGC 57.757 39.130 0.00 0.00 0.00 6.53
4372 8526 7.330454 CCGACTATCACAAGAATTATGATCCAG 59.670 40.741 0.00 0.00 34.86 3.86
4393 8547 3.395639 TGATCGTTTAAGCAAACCGACT 58.604 40.909 0.00 0.00 40.87 4.18
4410 8564 1.680735 AGACGGTGAGAGATGCTGATC 59.319 52.381 0.00 0.00 0.00 2.92
4458 8612 6.586344 ACCAGACAAGATATGTTAGTGGATG 58.414 40.000 11.78 0.00 44.12 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.