Multiple sequence alignment - TraesCS6B01G101400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G101400 chr6B 100.000 2520 0 0 663 3182 79717635 79715116 0.000000e+00 4654.0
1 TraesCS6B01G101400 chr6B 93.234 2276 121 19 663 2917 78454541 78456804 0.000000e+00 3319.0
2 TraesCS6B01G101400 chr6B 89.902 921 80 9 746 1664 59873275 59874184 0.000000e+00 1173.0
3 TraesCS6B01G101400 chr6B 100.000 323 0 0 1 323 79718297 79717975 5.870000e-167 597.0
4 TraesCS6B01G101400 chr6B 84.932 146 20 1 2812 2957 59930607 59930750 2.560000e-31 147.0
5 TraesCS6B01G101400 chrUn 93.742 2317 112 18 829 3123 27716266 27718571 0.000000e+00 3445.0
6 TraesCS6B01G101400 chrUn 99.043 209 0 2 116 323 65754622 65754829 1.080000e-99 374.0
7 TraesCS6B01G101400 chrUn 93.478 184 9 1 663 843 27715993 27716176 1.450000e-68 270.0
8 TraesCS6B01G101400 chrUn 98.182 110 1 1 1 109 65754437 65754546 1.170000e-44 191.0
9 TraesCS6B01G101400 chrUn 100.000 38 0 0 50 87 65754583 65754620 1.580000e-08 71.3
10 TraesCS6B01G101400 chr6A 94.552 1909 82 9 663 2554 45654271 45656174 0.000000e+00 2929.0
11 TraesCS6B01G101400 chr6A 92.412 1621 96 15 1125 2734 46489691 46488087 0.000000e+00 2287.0
12 TraesCS6B01G101400 chr6A 89.943 1581 132 14 746 2309 33021002 33022572 0.000000e+00 2013.0
13 TraesCS6B01G101400 chr6A 82.874 1197 183 11 1007 2183 13807758 13806564 0.000000e+00 1055.0
14 TraesCS6B01G101400 chr6A 82.166 471 38 14 2613 3052 45656167 45656622 2.330000e-96 363.0
15 TraesCS6B01G101400 chr6A 77.397 292 45 11 2684 2957 33023432 33023720 1.530000e-33 154.0
16 TraesCS6B01G101400 chr6D 89.202 1028 91 15 746 1771 29375176 29374167 0.000000e+00 1266.0
17 TraesCS6B01G101400 chr6D 87.770 417 43 3 1760 2173 29371007 29370596 6.170000e-132 481.0
18 TraesCS6B01G101400 chr6D 85.075 134 18 1 2824 2957 29370085 29369954 5.540000e-28 135.0
19 TraesCS6B01G101400 chr3D 98.762 323 4 0 1 323 579075816 579075494 2.750000e-160 575.0
20 TraesCS6B01G101400 chr4D 98.697 307 4 0 1 307 438110504 438110810 2.160000e-151 545.0
21 TraesCS6B01G101400 chr4D 96.774 31 1 0 293 323 438110840 438110870 6.000000e-03 52.8
22 TraesCS6B01G101400 chr7B 98.077 260 5 0 64 323 130740969 130740710 1.350000e-123 453.0
23 TraesCS6B01G101400 chr7B 96.923 65 2 0 1 65 130742722 130742658 3.360000e-20 110.0
24 TraesCS6B01G101400 chr4A 88.755 249 19 4 22 269 713519012 713518772 2.400000e-76 296.0
25 TraesCS6B01G101400 chr5D 82.443 131 17 6 1331 1458 362886461 362886334 3.360000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G101400 chr6B 79715116 79718297 3181 True 2625.500000 4654 100.000 1 3182 2 chr6B.!!$R1 3181
1 TraesCS6B01G101400 chr6B 78454541 78456804 2263 False 3319.000000 3319 93.234 663 2917 1 chr6B.!!$F3 2254
2 TraesCS6B01G101400 chr6B 59873275 59874184 909 False 1173.000000 1173 89.902 746 1664 1 chr6B.!!$F1 918
3 TraesCS6B01G101400 chrUn 27715993 27718571 2578 False 1857.500000 3445 93.610 663 3123 2 chrUn.!!$F1 2460
4 TraesCS6B01G101400 chr6A 46488087 46489691 1604 True 2287.000000 2287 92.412 1125 2734 1 chr6A.!!$R2 1609
5 TraesCS6B01G101400 chr6A 45654271 45656622 2351 False 1646.000000 2929 88.359 663 3052 2 chr6A.!!$F2 2389
6 TraesCS6B01G101400 chr6A 33021002 33023720 2718 False 1083.500000 2013 83.670 746 2957 2 chr6A.!!$F1 2211
7 TraesCS6B01G101400 chr6A 13806564 13807758 1194 True 1055.000000 1055 82.874 1007 2183 1 chr6A.!!$R1 1176
8 TraesCS6B01G101400 chr6D 29369954 29375176 5222 True 627.333333 1266 87.349 746 2957 3 chr6D.!!$R1 2211
9 TraesCS6B01G101400 chr7B 130740710 130742722 2012 True 281.500000 453 97.500 1 323 2 chr7B.!!$R1 322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 306 0.029433 GCAGTTAAGCGGCCTTATGC 59.971 55.0 0.0 0.0 34.35 3.14 F
312 313 1.342074 AGCGGCCTTATGCTATCTGA 58.658 50.0 0.0 0.0 40.28 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1982 5304 0.451783 GGGCCTATTTTCACTGCACG 59.548 55.000 0.84 0.0 0.0 5.34 R
2235 5578 6.373216 CCGAAATCCACATACAACTAAAGGAA 59.627 38.462 0.00 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.586425 CAATGTTGGTTGGTCTCCAGT 58.414 47.619 0.00 0.00 36.28 4.00
65 66 5.946972 TCCTCGGTTTTTAATGGCAAGATTA 59.053 36.000 0.00 0.00 0.00 1.75
66 67 6.605594 TCCTCGGTTTTTAATGGCAAGATTAT 59.394 34.615 0.00 0.00 0.00 1.28
67 68 7.776030 TCCTCGGTTTTTAATGGCAAGATTATA 59.224 33.333 0.00 0.00 0.00 0.98
68 69 8.576442 CCTCGGTTTTTAATGGCAAGATTATAT 58.424 33.333 0.00 0.00 0.00 0.86
69 70 9.965824 CTCGGTTTTTAATGGCAAGATTATATT 57.034 29.630 0.00 0.00 0.00 1.28
79 80 9.717942 AATGGCAAGATTATATTAGAGACAGAC 57.282 33.333 0.00 0.00 0.00 3.51
80 81 8.250143 TGGCAAGATTATATTAGAGACAGACA 57.750 34.615 0.00 0.00 0.00 3.41
81 82 8.704668 TGGCAAGATTATATTAGAGACAGACAA 58.295 33.333 0.00 0.00 0.00 3.18
82 83 9.717942 GGCAAGATTATATTAGAGACAGACAAT 57.282 33.333 0.00 0.00 0.00 2.71
92 93 8.939201 ATTAGAGACAGACAATGTACTGATTG 57.061 34.615 15.92 4.76 44.17 2.67
93 94 5.174395 AGAGACAGACAATGTACTGATTGC 58.826 41.667 15.92 0.95 44.17 3.56
95 96 4.002982 GACAGACAATGTACTGATTGCCA 58.997 43.478 15.92 0.00 44.17 4.92
96 97 4.397420 ACAGACAATGTACTGATTGCCAA 58.603 39.130 15.92 0.00 41.60 4.52
97 98 4.456911 ACAGACAATGTACTGATTGCCAAG 59.543 41.667 15.92 0.00 41.60 3.61
98 99 4.012374 AGACAATGTACTGATTGCCAAGG 58.988 43.478 5.97 0.00 36.89 3.61
99 100 4.009675 GACAATGTACTGATTGCCAAGGA 58.990 43.478 5.97 0.00 36.89 3.36
100 101 4.406456 ACAATGTACTGATTGCCAAGGAA 58.594 39.130 5.97 0.00 36.89 3.36
101 102 4.218417 ACAATGTACTGATTGCCAAGGAAC 59.782 41.667 5.97 0.00 36.89 3.62
102 103 5.982645 ACAATGTACTGATTGCCAAGGAACT 60.983 40.000 5.97 0.00 37.23 3.01
104 105 1.915141 ACTGATTGCCAAGGAACTGG 58.085 50.000 0.00 0.00 40.86 4.00
105 106 1.425066 ACTGATTGCCAAGGAACTGGA 59.575 47.619 0.00 0.00 40.86 3.86
106 107 2.089980 CTGATTGCCAAGGAACTGGAG 58.910 52.381 0.00 0.00 40.86 3.86
107 108 1.704628 TGATTGCCAAGGAACTGGAGA 59.295 47.619 0.00 0.00 40.86 3.71
108 109 2.108075 TGATTGCCAAGGAACTGGAGAA 59.892 45.455 0.00 0.00 40.86 2.87
109 110 2.276732 TTGCCAAGGAACTGGAGAAG 57.723 50.000 0.00 0.00 40.86 2.85
110 111 0.401738 TGCCAAGGAACTGGAGAAGG 59.598 55.000 0.00 0.00 40.86 3.46
111 112 0.322906 GCCAAGGAACTGGAGAAGGG 60.323 60.000 0.00 0.00 40.86 3.95
113 114 1.362224 CAAGGAACTGGAGAAGGGGA 58.638 55.000 0.00 0.00 40.86 4.81
114 115 1.280421 CAAGGAACTGGAGAAGGGGAG 59.720 57.143 0.00 0.00 40.86 4.30
115 116 0.252927 AGGAACTGGAGAAGGGGAGG 60.253 60.000 0.00 0.00 37.18 4.30
116 117 0.547954 GGAACTGGAGAAGGGGAGGT 60.548 60.000 0.00 0.00 0.00 3.85
117 118 0.906066 GAACTGGAGAAGGGGAGGTC 59.094 60.000 0.00 0.00 0.00 3.85
118 119 0.193574 AACTGGAGAAGGGGAGGTCA 59.806 55.000 0.00 0.00 0.00 4.02
119 120 0.193574 ACTGGAGAAGGGGAGGTCAA 59.806 55.000 0.00 0.00 0.00 3.18
122 123 1.916181 TGGAGAAGGGGAGGTCAAATC 59.084 52.381 0.00 0.00 0.00 2.17
123 124 1.134371 GGAGAAGGGGAGGTCAAATCG 60.134 57.143 0.00 0.00 0.00 3.34
124 125 0.253327 AGAAGGGGAGGTCAAATCGC 59.747 55.000 0.00 0.00 0.00 4.58
125 126 0.253327 GAAGGGGAGGTCAAATCGCT 59.747 55.000 0.00 0.00 0.00 4.93
126 127 0.253327 AAGGGGAGGTCAAATCGCTC 59.747 55.000 0.00 0.00 0.00 5.03
127 128 1.521681 GGGGAGGTCAAATCGCTCG 60.522 63.158 0.00 0.00 0.00 5.03
128 129 1.521681 GGGAGGTCAAATCGCTCGG 60.522 63.158 0.00 0.00 0.00 4.63
129 130 1.515954 GGAGGTCAAATCGCTCGGA 59.484 57.895 0.00 0.00 0.00 4.55
130 131 0.806492 GGAGGTCAAATCGCTCGGAC 60.806 60.000 0.00 0.00 0.00 4.79
131 132 0.173708 GAGGTCAAATCGCTCGGACT 59.826 55.000 0.00 0.00 0.00 3.85
132 133 0.108615 AGGTCAAATCGCTCGGACTG 60.109 55.000 0.00 0.00 0.00 3.51
133 134 1.696832 GGTCAAATCGCTCGGACTGC 61.697 60.000 0.00 0.00 0.00 4.40
134 135 0.737715 GTCAAATCGCTCGGACTGCT 60.738 55.000 0.00 0.00 0.00 4.24
135 136 0.037326 TCAAATCGCTCGGACTGCTT 60.037 50.000 0.00 0.00 0.00 3.91
136 137 0.798776 CAAATCGCTCGGACTGCTTT 59.201 50.000 0.00 0.00 0.00 3.51
137 138 1.079503 AAATCGCTCGGACTGCTTTC 58.920 50.000 0.00 0.00 0.00 2.62
138 139 0.037326 AATCGCTCGGACTGCTTTCA 60.037 50.000 0.00 0.00 0.00 2.69
139 140 0.459237 ATCGCTCGGACTGCTTTCAG 60.459 55.000 0.00 0.00 45.71 3.02
140 141 1.080501 CGCTCGGACTGCTTTCAGA 60.081 57.895 0.00 0.00 42.95 3.27
141 142 0.459237 CGCTCGGACTGCTTTCAGAT 60.459 55.000 0.00 0.00 42.95 2.90
142 143 1.731720 GCTCGGACTGCTTTCAGATT 58.268 50.000 0.00 0.00 42.95 2.40
143 144 2.735444 CGCTCGGACTGCTTTCAGATTA 60.735 50.000 0.00 0.00 42.95 1.75
144 145 3.462021 GCTCGGACTGCTTTCAGATTAT 58.538 45.455 0.00 0.00 42.95 1.28
145 146 4.621991 GCTCGGACTGCTTTCAGATTATA 58.378 43.478 0.00 0.00 42.95 0.98
146 147 5.233988 GCTCGGACTGCTTTCAGATTATAT 58.766 41.667 0.00 0.00 42.95 0.86
147 148 5.119898 GCTCGGACTGCTTTCAGATTATATG 59.880 44.000 0.00 0.00 42.95 1.78
148 149 4.991056 TCGGACTGCTTTCAGATTATATGC 59.009 41.667 0.00 0.00 42.95 3.14
149 150 4.143242 CGGACTGCTTTCAGATTATATGCG 60.143 45.833 0.00 0.00 42.95 4.73
150 151 4.991056 GGACTGCTTTCAGATTATATGCGA 59.009 41.667 0.00 0.00 42.95 5.10
151 152 5.119898 GGACTGCTTTCAGATTATATGCGAG 59.880 44.000 0.00 0.00 42.95 5.03
152 153 5.847304 ACTGCTTTCAGATTATATGCGAGA 58.153 37.500 0.00 0.00 42.95 4.04
153 154 6.462500 ACTGCTTTCAGATTATATGCGAGAT 58.538 36.000 0.00 0.00 42.95 2.75
154 155 6.589523 ACTGCTTTCAGATTATATGCGAGATC 59.410 38.462 0.00 0.00 42.95 2.75
155 156 6.458210 TGCTTTCAGATTATATGCGAGATCA 58.542 36.000 0.00 0.00 0.00 2.92
156 157 6.930722 TGCTTTCAGATTATATGCGAGATCAA 59.069 34.615 0.00 0.00 0.00 2.57
157 158 7.442062 TGCTTTCAGATTATATGCGAGATCAAA 59.558 33.333 0.00 0.00 0.00 2.69
158 159 7.956403 GCTTTCAGATTATATGCGAGATCAAAG 59.044 37.037 0.00 0.00 0.00 2.77
159 160 9.201127 CTTTCAGATTATATGCGAGATCAAAGA 57.799 33.333 0.00 0.00 0.00 2.52
160 161 9.716531 TTTCAGATTATATGCGAGATCAAAGAT 57.283 29.630 0.00 0.00 0.00 2.40
161 162 8.699283 TCAGATTATATGCGAGATCAAAGATG 57.301 34.615 0.00 0.00 0.00 2.90
162 163 7.277319 TCAGATTATATGCGAGATCAAAGATGC 59.723 37.037 0.00 0.00 0.00 3.91
163 164 7.278203 CAGATTATATGCGAGATCAAAGATGCT 59.722 37.037 0.00 0.00 0.00 3.79
164 165 8.473219 AGATTATATGCGAGATCAAAGATGCTA 58.527 33.333 0.00 0.00 0.00 3.49
165 166 9.258826 GATTATATGCGAGATCAAAGATGCTAT 57.741 33.333 0.00 0.00 0.00 2.97
166 167 6.905544 ATATGCGAGATCAAAGATGCTATG 57.094 37.500 0.00 0.00 0.00 2.23
167 168 4.326504 TGCGAGATCAAAGATGCTATGA 57.673 40.909 0.00 0.00 0.00 2.15
168 169 4.053983 TGCGAGATCAAAGATGCTATGAC 58.946 43.478 0.00 0.00 0.00 3.06
169 170 4.202192 TGCGAGATCAAAGATGCTATGACT 60.202 41.667 0.00 0.00 0.00 3.41
170 171 4.150274 GCGAGATCAAAGATGCTATGACTG 59.850 45.833 0.00 0.00 0.00 3.51
171 172 5.288015 CGAGATCAAAGATGCTATGACTGT 58.712 41.667 0.00 0.00 0.00 3.55
172 173 5.752472 CGAGATCAAAGATGCTATGACTGTT 59.248 40.000 0.00 0.00 0.00 3.16
173 174 6.257411 CGAGATCAAAGATGCTATGACTGTTT 59.743 38.462 0.00 0.00 0.00 2.83
174 175 7.201591 CGAGATCAAAGATGCTATGACTGTTTT 60.202 37.037 0.00 0.00 0.00 2.43
175 176 8.345724 AGATCAAAGATGCTATGACTGTTTTT 57.654 30.769 0.00 0.00 0.00 1.94
176 177 8.242053 AGATCAAAGATGCTATGACTGTTTTTG 58.758 33.333 0.00 0.00 0.00 2.44
177 178 7.509141 TCAAAGATGCTATGACTGTTTTTGA 57.491 32.000 0.00 0.00 31.76 2.69
178 179 7.587629 TCAAAGATGCTATGACTGTTTTTGAG 58.412 34.615 0.00 0.00 30.98 3.02
179 180 7.229306 TCAAAGATGCTATGACTGTTTTTGAGT 59.771 33.333 0.00 0.00 30.98 3.41
180 181 6.734104 AGATGCTATGACTGTTTTTGAGTC 57.266 37.500 0.00 0.00 40.34 3.36
181 182 4.990543 TGCTATGACTGTTTTTGAGTCG 57.009 40.909 0.00 0.00 42.46 4.18
182 183 3.745975 TGCTATGACTGTTTTTGAGTCGG 59.254 43.478 0.00 0.00 42.46 4.79
183 184 3.746492 GCTATGACTGTTTTTGAGTCGGT 59.254 43.478 0.00 0.00 42.46 4.69
184 185 4.143094 GCTATGACTGTTTTTGAGTCGGTC 60.143 45.833 0.00 0.00 42.46 4.79
185 186 3.254470 TGACTGTTTTTGAGTCGGTCA 57.746 42.857 0.00 0.00 42.46 4.02
186 187 3.194861 TGACTGTTTTTGAGTCGGTCAG 58.805 45.455 0.00 0.00 42.46 3.51
187 188 3.195661 GACTGTTTTTGAGTCGGTCAGT 58.804 45.455 0.00 0.00 36.21 3.41
188 189 4.142116 TGACTGTTTTTGAGTCGGTCAGTA 60.142 41.667 0.00 0.00 42.46 2.74
189 190 4.957296 ACTGTTTTTGAGTCGGTCAGTAT 58.043 39.130 0.00 0.00 36.21 2.12
190 191 4.989168 ACTGTTTTTGAGTCGGTCAGTATC 59.011 41.667 0.00 0.00 36.21 2.24
191 192 4.951254 TGTTTTTGAGTCGGTCAGTATCA 58.049 39.130 0.00 0.00 36.21 2.15
192 193 5.361427 TGTTTTTGAGTCGGTCAGTATCAA 58.639 37.500 0.00 0.00 36.21 2.57
193 194 5.818336 TGTTTTTGAGTCGGTCAGTATCAAA 59.182 36.000 0.00 0.00 37.92 2.69
194 195 5.917541 TTTTGAGTCGGTCAGTATCAAAC 57.082 39.130 0.00 0.00 39.02 2.93
195 196 4.594123 TTGAGTCGGTCAGTATCAAACA 57.406 40.909 0.00 0.00 36.21 2.83
196 197 3.909430 TGAGTCGGTCAGTATCAAACAC 58.091 45.455 0.00 0.00 0.00 3.32
197 198 3.319689 TGAGTCGGTCAGTATCAAACACA 59.680 43.478 0.00 0.00 0.00 3.72
198 199 4.021456 TGAGTCGGTCAGTATCAAACACAT 60.021 41.667 0.00 0.00 0.00 3.21
199 200 5.184287 TGAGTCGGTCAGTATCAAACACATA 59.816 40.000 0.00 0.00 0.00 2.29
200 201 5.408356 AGTCGGTCAGTATCAAACACATAC 58.592 41.667 0.00 0.00 0.00 2.39
201 202 4.565564 GTCGGTCAGTATCAAACACATACC 59.434 45.833 0.00 0.00 0.00 2.73
202 203 3.869246 CGGTCAGTATCAAACACATACCC 59.131 47.826 0.00 0.00 0.00 3.69
203 204 4.621983 CGGTCAGTATCAAACACATACCCA 60.622 45.833 0.00 0.00 0.00 4.51
204 205 4.876107 GGTCAGTATCAAACACATACCCAG 59.124 45.833 0.00 0.00 0.00 4.45
205 206 4.876107 GTCAGTATCAAACACATACCCAGG 59.124 45.833 0.00 0.00 0.00 4.45
206 207 4.080582 TCAGTATCAAACACATACCCAGGG 60.081 45.833 2.85 2.85 0.00 4.45
207 208 4.080582 CAGTATCAAACACATACCCAGGGA 60.081 45.833 14.54 0.00 0.00 4.20
208 209 4.538490 AGTATCAAACACATACCCAGGGAA 59.462 41.667 14.54 0.00 0.00 3.97
209 210 4.608170 ATCAAACACATACCCAGGGAAT 57.392 40.909 14.54 0.00 0.00 3.01
210 211 3.696045 TCAAACACATACCCAGGGAATG 58.304 45.455 14.54 6.99 0.00 2.67
211 212 2.143876 AACACATACCCAGGGAATGC 57.856 50.000 14.54 0.00 0.00 3.56
212 213 0.998928 ACACATACCCAGGGAATGCA 59.001 50.000 14.54 0.00 0.00 3.96
213 214 1.357420 ACACATACCCAGGGAATGCAA 59.643 47.619 14.54 0.00 0.00 4.08
214 215 2.024080 ACACATACCCAGGGAATGCAAT 60.024 45.455 14.54 0.00 0.00 3.56
215 216 2.624838 CACATACCCAGGGAATGCAATC 59.375 50.000 14.54 0.00 0.00 2.67
216 217 2.244510 ACATACCCAGGGAATGCAATCA 59.755 45.455 14.54 0.00 0.00 2.57
217 218 3.298619 CATACCCAGGGAATGCAATCAA 58.701 45.455 14.54 0.00 0.00 2.57
218 219 1.560505 ACCCAGGGAATGCAATCAAC 58.439 50.000 14.54 0.00 0.00 3.18
219 220 1.077663 ACCCAGGGAATGCAATCAACT 59.922 47.619 14.54 0.00 0.00 3.16
220 221 1.479323 CCCAGGGAATGCAATCAACTG 59.521 52.381 15.15 15.15 0.00 3.16
221 222 1.479323 CCAGGGAATGCAATCAACTGG 59.521 52.381 22.58 22.58 38.67 4.00
222 223 1.134907 CAGGGAATGCAATCAACTGGC 60.135 52.381 14.57 0.00 0.00 4.85
223 224 0.896923 GGGAATGCAATCAACTGGCA 59.103 50.000 3.77 0.00 42.43 4.92
224 225 1.404583 GGGAATGCAATCAACTGGCAC 60.405 52.381 3.77 0.00 40.83 5.01
225 226 1.273048 GGAATGCAATCAACTGGCACA 59.727 47.619 3.77 0.00 40.83 4.57
226 227 2.331194 GAATGCAATCAACTGGCACAC 58.669 47.619 0.00 0.00 40.83 3.82
227 228 0.241749 ATGCAATCAACTGGCACACG 59.758 50.000 0.00 0.00 40.83 4.49
228 229 0.817229 TGCAATCAACTGGCACACGA 60.817 50.000 0.00 0.00 31.58 4.35
229 230 0.110056 GCAATCAACTGGCACACGAG 60.110 55.000 0.00 0.00 0.00 4.18
230 231 0.110056 CAATCAACTGGCACACGAGC 60.110 55.000 0.00 0.00 0.00 5.03
231 232 0.250467 AATCAACTGGCACACGAGCT 60.250 50.000 0.00 0.00 34.17 4.09
232 233 0.608130 ATCAACTGGCACACGAGCTA 59.392 50.000 0.00 0.00 34.17 3.32
234 235 1.374758 AACTGGCACACGAGCTAGC 60.375 57.895 6.62 6.62 45.80 3.42
235 236 2.788191 AACTGGCACACGAGCTAGCC 62.788 60.000 12.13 1.79 45.80 3.93
246 247 4.334837 GCTAGCCGCTAGAGCAAG 57.665 61.111 28.18 6.42 42.21 4.01
247 248 1.300542 GCTAGCCGCTAGAGCAAGG 60.301 63.158 28.18 4.09 42.21 3.61
248 249 1.300542 CTAGCCGCTAGAGCAAGGC 60.301 63.158 21.00 11.29 44.49 4.35
249 250 2.021068 CTAGCCGCTAGAGCAAGGCA 62.021 60.000 21.00 7.45 45.89 4.75
250 251 1.613317 TAGCCGCTAGAGCAAGGCAA 61.613 55.000 18.80 0.00 45.89 4.52
251 252 2.754995 GCCGCTAGAGCAAGGCAAC 61.755 63.158 13.62 0.00 43.88 4.17
252 253 1.375908 CCGCTAGAGCAAGGCAACA 60.376 57.895 1.89 0.00 42.21 3.33
253 254 1.639298 CCGCTAGAGCAAGGCAACAC 61.639 60.000 1.89 0.00 42.21 3.32
254 255 1.790387 GCTAGAGCAAGGCAACACG 59.210 57.895 0.00 0.00 41.59 4.49
255 256 0.670546 GCTAGAGCAAGGCAACACGA 60.671 55.000 0.00 0.00 41.59 4.35
256 257 2.009042 GCTAGAGCAAGGCAACACGAT 61.009 52.381 0.00 0.00 41.59 3.73
257 258 1.662629 CTAGAGCAAGGCAACACGATG 59.337 52.381 0.00 0.00 41.41 3.84
258 259 0.035317 AGAGCAAGGCAACACGATGA 59.965 50.000 0.00 0.00 41.41 2.92
259 260 1.089920 GAGCAAGGCAACACGATGAT 58.910 50.000 0.00 0.00 41.41 2.45
260 261 1.470098 GAGCAAGGCAACACGATGATT 59.530 47.619 0.00 0.00 41.41 2.57
261 262 1.888512 AGCAAGGCAACACGATGATTT 59.111 42.857 0.00 0.00 41.41 2.17
262 263 1.987770 GCAAGGCAACACGATGATTTG 59.012 47.619 0.00 0.00 41.41 2.32
263 264 2.607771 GCAAGGCAACACGATGATTTGT 60.608 45.455 0.00 0.00 41.41 2.83
264 265 3.641648 CAAGGCAACACGATGATTTGTT 58.358 40.909 0.00 0.00 36.35 2.83
265 266 4.050553 CAAGGCAACACGATGATTTGTTT 58.949 39.130 0.00 0.00 33.59 2.83
266 267 4.320608 AGGCAACACGATGATTTGTTTT 57.679 36.364 0.00 0.00 33.59 2.43
267 268 4.692228 AGGCAACACGATGATTTGTTTTT 58.308 34.783 0.00 0.00 33.59 1.94
268 269 4.507388 AGGCAACACGATGATTTGTTTTTG 59.493 37.500 0.00 0.00 33.59 2.44
269 270 4.505922 GGCAACACGATGATTTGTTTTTGA 59.494 37.500 0.00 0.00 33.59 2.69
270 271 5.177327 GGCAACACGATGATTTGTTTTTGAT 59.823 36.000 0.00 0.00 33.59 2.57
271 272 6.292811 GGCAACACGATGATTTGTTTTTGATT 60.293 34.615 0.00 0.00 33.59 2.57
272 273 6.570789 GCAACACGATGATTTGTTTTTGATTG 59.429 34.615 0.00 0.00 33.59 2.67
273 274 6.214205 ACACGATGATTTGTTTTTGATTGC 57.786 33.333 0.00 0.00 0.00 3.56
274 275 5.752472 ACACGATGATTTGTTTTTGATTGCA 59.248 32.000 0.00 0.00 0.00 4.08
275 276 6.257411 ACACGATGATTTGTTTTTGATTGCAA 59.743 30.769 0.00 0.00 0.00 4.08
276 277 7.124471 CACGATGATTTGTTTTTGATTGCAAA 58.876 30.769 1.71 0.00 41.97 3.68
277 278 7.110490 CACGATGATTTGTTTTTGATTGCAAAC 59.890 33.333 1.71 0.04 43.27 2.93
278 279 6.298105 CGATGATTTGTTTTTGATTGCAAACG 59.702 34.615 1.71 0.00 43.27 3.60
279 280 6.414408 TGATTTGTTTTTGATTGCAAACGT 57.586 29.167 1.71 0.00 43.27 3.99
280 281 6.473521 TGATTTGTTTTTGATTGCAAACGTC 58.526 32.000 1.71 0.00 43.27 4.34
281 282 4.849111 TTGTTTTTGATTGCAAACGTCC 57.151 36.364 1.71 0.00 43.27 4.79
282 283 3.190874 TGTTTTTGATTGCAAACGTCCC 58.809 40.909 1.71 0.00 43.27 4.46
283 284 2.517650 TTTTGATTGCAAACGTCCCC 57.482 45.000 1.71 0.00 43.27 4.81
284 285 0.312416 TTTGATTGCAAACGTCCCCG 59.688 50.000 1.71 0.00 38.99 5.73
285 286 0.535328 TTGATTGCAAACGTCCCCGA 60.535 50.000 1.71 0.00 37.88 5.14
286 287 0.953471 TGATTGCAAACGTCCCCGAG 60.953 55.000 1.71 0.00 37.88 4.63
287 288 2.253414 GATTGCAAACGTCCCCGAGC 62.253 60.000 1.71 0.00 37.88 5.03
288 289 3.758973 TTGCAAACGTCCCCGAGCA 62.759 57.895 0.00 0.00 37.80 4.26
289 290 3.423154 GCAAACGTCCCCGAGCAG 61.423 66.667 0.00 0.00 37.88 4.24
290 291 2.030562 CAAACGTCCCCGAGCAGT 59.969 61.111 0.00 0.00 37.88 4.40
291 292 1.597027 CAAACGTCCCCGAGCAGTT 60.597 57.895 0.00 0.00 37.88 3.16
292 293 0.320073 CAAACGTCCCCGAGCAGTTA 60.320 55.000 0.00 0.00 37.88 2.24
293 294 0.393820 AAACGTCCCCGAGCAGTTAA 59.606 50.000 0.00 0.00 37.88 2.01
294 295 0.037605 AACGTCCCCGAGCAGTTAAG 60.038 55.000 0.00 0.00 37.88 1.85
295 296 1.810030 CGTCCCCGAGCAGTTAAGC 60.810 63.158 0.00 0.00 35.63 3.09
296 297 1.810030 GTCCCCGAGCAGTTAAGCG 60.810 63.158 0.00 0.00 40.15 4.68
297 298 2.511600 CCCCGAGCAGTTAAGCGG 60.512 66.667 0.00 0.00 43.20 5.52
298 299 3.195698 CCCGAGCAGTTAAGCGGC 61.196 66.667 0.00 0.00 42.29 6.53
299 300 3.195698 CCGAGCAGTTAAGCGGCC 61.196 66.667 0.00 0.00 39.13 6.13
300 301 2.125512 CGAGCAGTTAAGCGGCCT 60.126 61.111 0.00 0.00 39.13 5.19
301 302 1.741770 CGAGCAGTTAAGCGGCCTT 60.742 57.895 0.00 0.00 39.13 4.35
302 303 0.459585 CGAGCAGTTAAGCGGCCTTA 60.460 55.000 0.00 0.00 39.13 2.69
303 304 1.806623 CGAGCAGTTAAGCGGCCTTAT 60.807 52.381 0.00 0.00 39.13 1.73
304 305 1.599542 GAGCAGTTAAGCGGCCTTATG 59.400 52.381 0.00 0.00 39.13 1.90
305 306 0.029433 GCAGTTAAGCGGCCTTATGC 59.971 55.000 0.00 0.00 34.35 3.14
306 307 1.668419 CAGTTAAGCGGCCTTATGCT 58.332 50.000 0.00 0.00 44.97 3.79
307 308 2.833794 CAGTTAAGCGGCCTTATGCTA 58.166 47.619 0.00 0.00 41.46 3.49
308 309 3.403038 CAGTTAAGCGGCCTTATGCTAT 58.597 45.455 0.00 0.00 41.46 2.97
309 310 3.433615 CAGTTAAGCGGCCTTATGCTATC 59.566 47.826 0.00 0.00 41.46 2.08
310 311 3.325135 AGTTAAGCGGCCTTATGCTATCT 59.675 43.478 0.00 0.00 41.46 1.98
311 312 2.175878 AAGCGGCCTTATGCTATCTG 57.824 50.000 0.00 0.00 41.46 2.90
312 313 1.342074 AGCGGCCTTATGCTATCTGA 58.658 50.000 0.00 0.00 40.28 3.27
313 314 1.694150 AGCGGCCTTATGCTATCTGAA 59.306 47.619 0.00 0.00 40.28 3.02
314 315 2.304180 AGCGGCCTTATGCTATCTGAAT 59.696 45.455 0.00 0.00 40.28 2.57
315 316 2.417933 GCGGCCTTATGCTATCTGAATG 59.582 50.000 0.00 0.00 40.92 2.67
316 317 3.668447 CGGCCTTATGCTATCTGAATGT 58.332 45.455 0.00 0.00 40.92 2.71
317 318 4.820897 CGGCCTTATGCTATCTGAATGTA 58.179 43.478 0.00 0.00 40.92 2.29
318 319 5.237815 CGGCCTTATGCTATCTGAATGTAA 58.762 41.667 0.00 0.00 40.92 2.41
319 320 5.120830 CGGCCTTATGCTATCTGAATGTAAC 59.879 44.000 0.00 0.00 40.92 2.50
320 321 5.997746 GGCCTTATGCTATCTGAATGTAACA 59.002 40.000 0.00 0.00 40.92 2.41
321 322 6.073003 GGCCTTATGCTATCTGAATGTAACAC 60.073 42.308 0.00 0.00 40.92 3.32
322 323 6.073003 GCCTTATGCTATCTGAATGTAACACC 60.073 42.308 0.00 0.00 36.87 4.16
696 701 8.833493 GGCCAACAGTACGTAAAGATATTAATT 58.167 33.333 0.00 0.00 0.00 1.40
697 702 9.646336 GCCAACAGTACGTAAAGATATTAATTG 57.354 33.333 0.00 0.00 0.00 2.32
737 742 5.364735 GGCCCAAATAGTAGAACTACCACTA 59.635 44.000 8.16 0.00 36.75 2.74
871 982 2.622064 AAGTCCAGAAACAAGCGTCT 57.378 45.000 0.00 0.00 0.00 4.18
936 1047 4.634012 TTAGTCCACTTTACCACAGCAT 57.366 40.909 0.00 0.00 0.00 3.79
939 1050 3.569701 AGTCCACTTTACCACAGCATTTG 59.430 43.478 0.00 0.00 0.00 2.32
983 1096 4.806640 ACATTGTGGGATCAATTTGACC 57.193 40.909 0.15 5.50 36.10 4.02
1029 1142 2.039418 TCTACAGGCATTAGCATCGGT 58.961 47.619 0.00 0.00 44.61 4.69
1038 1151 4.142816 GGCATTAGCATCGGTGTTATCATC 60.143 45.833 0.00 0.00 44.61 2.92
1209 1346 2.099756 AGCAGAACTGAAACAAGCAACC 59.900 45.455 5.97 0.00 0.00 3.77
1487 1638 3.410631 TCTTATTCACGGCAAGAACCA 57.589 42.857 0.00 0.00 0.00 3.67
1492 1643 4.701956 ATTCACGGCAAGAACCATAAAG 57.298 40.909 0.00 0.00 0.00 1.85
1493 1644 3.410631 TCACGGCAAGAACCATAAAGA 57.589 42.857 0.00 0.00 0.00 2.52
1881 5203 3.347216 GAGTTTCCTGCTGGCTATGAAA 58.653 45.455 4.42 0.00 0.00 2.69
1982 5304 1.821136 AGCTAGGCAATGCTTGGAAAC 59.179 47.619 4.66 0.00 35.86 2.78
2235 5578 7.148323 GGCACTTTTGTTGTTCATTTAACCTTT 60.148 33.333 0.00 0.00 37.27 3.11
2437 5802 2.639347 ACTGGGTGTGAGAATGTGATCA 59.361 45.455 0.00 0.00 0.00 2.92
2459 5824 2.030274 AGTTTGGTATTGAAACTGCGCC 60.030 45.455 4.18 0.00 41.16 6.53
2461 5826 1.610363 TGGTATTGAAACTGCGCCAA 58.390 45.000 4.18 0.81 0.00 4.52
2624 6597 3.243234 TGCCGCCGTTATATTCCATTTTG 60.243 43.478 0.00 0.00 0.00 2.44
2692 7386 5.997746 CCGTTATATTCCAGGACATGATGTT 59.002 40.000 0.00 0.00 0.00 2.71
2730 7606 7.214467 ACCTACATTTGGATTGTAAACACAG 57.786 36.000 0.00 0.00 0.00 3.66
2794 7752 4.067896 ACTTCAGTTGTGCCATAAGTCTG 58.932 43.478 0.00 0.00 0.00 3.51
2809 7788 0.464036 GTCTGACACACACACCCTCA 59.536 55.000 2.24 0.00 0.00 3.86
2816 7795 1.670811 CACACACACCCTCACTTGTTC 59.329 52.381 0.00 0.00 0.00 3.18
2820 7806 1.227823 CACCCTCACTTGTTCGCCA 60.228 57.895 0.00 0.00 0.00 5.69
2862 7848 1.278637 GGTTCTTTGCGTCACCGTG 59.721 57.895 0.00 0.00 36.15 4.94
2893 7885 1.550976 GGCCGGGGATATCTCTTGTAG 59.449 57.143 2.18 0.00 0.00 2.74
2894 7886 1.066787 GCCGGGGATATCTCTTGTAGC 60.067 57.143 2.18 0.00 0.00 3.58
2920 7912 3.090210 TGATGCCATGTCCATGAGTTT 57.910 42.857 8.82 0.00 41.20 2.66
2957 7974 6.494491 TGGATGTCCTGATGAACAAAAGAAAT 59.506 34.615 0.09 0.00 36.82 2.17
2958 7975 6.810182 GGATGTCCTGATGAACAAAAGAAATG 59.190 38.462 0.00 0.00 0.00 2.32
2968 7985 9.346725 GATGAACAAAAGAAATGTGTTAGGATC 57.653 33.333 0.00 0.00 35.67 3.36
2972 7989 7.004086 ACAAAAGAAATGTGTTAGGATCCTGA 58.996 34.615 25.28 14.14 0.00 3.86
2982 7999 6.173339 GTGTTAGGATCCTGATTGAAGAACA 58.827 40.000 25.28 19.50 0.00 3.18
3002 8028 8.001881 AGAACAATTAGTGATCTACTCGACAT 57.998 34.615 0.00 0.00 37.59 3.06
3059 8086 1.800315 CAACCTGAGTACGACCGCG 60.800 63.158 0.00 0.00 44.79 6.46
3073 8100 2.906897 CGCGGGGATCCAATTGGG 60.907 66.667 24.29 8.16 35.41 4.12
3079 8106 0.469892 GGGATCCAATTGGGCGGAAT 60.470 55.000 24.29 9.94 34.22 3.01
3089 8119 2.680965 GGCGGAATTGGAAGGGGA 59.319 61.111 0.00 0.00 0.00 4.81
3092 8122 1.485124 GCGGAATTGGAAGGGGAATT 58.515 50.000 0.00 0.00 0.00 2.17
3111 8141 5.634020 GGAATTATAGACCGAATGACGAAGG 59.366 44.000 0.00 0.00 45.77 3.46
3119 8149 0.640768 GAATGACGAAGGCGAACTCG 59.359 55.000 0.00 0.00 41.64 4.18
3129 8159 4.065281 CGAACTCGGCGGGTTCCT 62.065 66.667 38.17 14.92 39.65 3.36
3130 8160 2.346365 GAACTCGGCGGGTTCCTT 59.654 61.111 36.05 11.87 37.63 3.36
3131 8161 1.593265 GAACTCGGCGGGTTCCTTA 59.407 57.895 36.05 0.43 37.63 2.69
3132 8162 0.738762 GAACTCGGCGGGTTCCTTAC 60.739 60.000 36.05 16.26 37.63 2.34
3133 8163 2.176314 AACTCGGCGGGTTCCTTACC 62.176 60.000 21.29 0.00 46.99 2.85
3141 8171 4.397832 GTTCCTTACCGCGGGGCA 62.398 66.667 31.76 11.59 36.48 5.36
3142 8172 3.638316 TTCCTTACCGCGGGGCAA 61.638 61.111 31.76 18.67 36.48 4.52
3143 8173 3.615509 TTCCTTACCGCGGGGCAAG 62.616 63.158 31.76 26.08 36.58 4.01
3145 8175 4.090588 CTTACCGCGGGGCAAGGA 62.091 66.667 31.76 5.64 33.66 3.36
3146 8176 4.090588 TTACCGCGGGGCAAGGAG 62.091 66.667 31.76 0.00 36.48 3.69
3151 8181 4.168291 GCGGGGCAAGGAGGAGAG 62.168 72.222 0.00 0.00 0.00 3.20
3152 8182 3.474570 CGGGGCAAGGAGGAGAGG 61.475 72.222 0.00 0.00 0.00 3.69
3153 8183 3.093172 GGGGCAAGGAGGAGAGGG 61.093 72.222 0.00 0.00 0.00 4.30
3154 8184 2.041265 GGGCAAGGAGGAGAGGGA 59.959 66.667 0.00 0.00 0.00 4.20
3155 8185 2.069430 GGGCAAGGAGGAGAGGGAG 61.069 68.421 0.00 0.00 0.00 4.30
3156 8186 1.306568 GGCAAGGAGGAGAGGGAGT 60.307 63.158 0.00 0.00 0.00 3.85
3157 8187 1.334384 GGCAAGGAGGAGAGGGAGTC 61.334 65.000 0.00 0.00 0.00 3.36
3158 8188 1.334384 GCAAGGAGGAGAGGGAGTCC 61.334 65.000 0.00 0.00 0.00 3.85
3159 8189 1.040339 CAAGGAGGAGAGGGAGTCCG 61.040 65.000 2.26 0.00 39.30 4.79
3160 8190 2.835895 GGAGGAGAGGGAGTCCGC 60.836 72.222 2.26 0.00 39.30 5.54
3161 8191 2.835895 GAGGAGAGGGAGTCCGCC 60.836 72.222 2.26 2.01 39.30 6.13
3162 8192 4.824515 AGGAGAGGGAGTCCGCCG 62.825 72.222 2.26 0.00 39.30 6.46
3163 8193 4.816984 GGAGAGGGAGTCCGCCGA 62.817 72.222 2.26 0.00 38.33 5.54
3164 8194 3.213402 GAGAGGGAGTCCGCCGAG 61.213 72.222 2.26 0.00 38.33 4.63
3165 8195 3.700831 GAGAGGGAGTCCGCCGAGA 62.701 68.421 2.26 0.00 38.33 4.04
3166 8196 3.519930 GAGGGAGTCCGCCGAGAC 61.520 72.222 2.26 0.00 38.33 3.36
3170 8200 4.176851 GAGTCCGCCGAGACCGTC 62.177 72.222 2.73 0.00 37.49 4.79
3172 8202 4.477975 GTCCGCCGAGACCGTCAG 62.478 72.222 0.40 0.00 0.00 3.51
3177 8207 4.778415 CCGAGACCGTCAGCCGTG 62.778 72.222 0.40 0.00 33.66 4.94
3178 8208 4.778415 CGAGACCGTCAGCCGTGG 62.778 72.222 0.40 0.00 33.66 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.620822 GAGACCAACCAACATTGCCT 58.379 50.000 0.00 0.00 0.00 4.75
35 36 3.499157 CCATTAAAAACCGAGGACAACGA 59.501 43.478 0.00 0.00 0.00 3.85
67 68 7.493971 GCAATCAGTACATTGTCTGTCTCTAAT 59.506 37.037 12.75 0.00 39.39 1.73
68 69 6.813649 GCAATCAGTACATTGTCTGTCTCTAA 59.186 38.462 12.75 0.00 39.39 2.10
69 70 6.333416 GCAATCAGTACATTGTCTGTCTCTA 58.667 40.000 12.75 0.00 39.39 2.43
70 71 5.174395 GCAATCAGTACATTGTCTGTCTCT 58.826 41.667 12.75 0.00 39.39 3.10
71 72 4.331168 GGCAATCAGTACATTGTCTGTCTC 59.669 45.833 12.75 5.13 39.39 3.36
72 73 4.256920 GGCAATCAGTACATTGTCTGTCT 58.743 43.478 12.75 0.00 39.39 3.41
73 74 4.002982 TGGCAATCAGTACATTGTCTGTC 58.997 43.478 10.73 0.14 38.88 3.51
75 76 4.142534 CCTTGGCAATCAGTACATTGTCTG 60.143 45.833 0.00 1.48 38.88 3.51
76 77 4.012374 CCTTGGCAATCAGTACATTGTCT 58.988 43.478 0.00 0.00 38.88 3.41
79 80 4.460382 AGTTCCTTGGCAATCAGTACATTG 59.540 41.667 0.00 0.00 36.91 2.82
80 81 4.460382 CAGTTCCTTGGCAATCAGTACATT 59.540 41.667 0.00 0.00 0.00 2.71
81 82 4.012374 CAGTTCCTTGGCAATCAGTACAT 58.988 43.478 0.00 0.00 0.00 2.29
82 83 3.411446 CAGTTCCTTGGCAATCAGTACA 58.589 45.455 0.00 0.00 0.00 2.90
85 86 1.425066 TCCAGTTCCTTGGCAATCAGT 59.575 47.619 0.00 0.00 38.16 3.41
86 87 2.089980 CTCCAGTTCCTTGGCAATCAG 58.910 52.381 0.00 0.00 38.16 2.90
87 88 1.704628 TCTCCAGTTCCTTGGCAATCA 59.295 47.619 0.00 0.00 38.16 2.57
88 89 2.496899 TCTCCAGTTCCTTGGCAATC 57.503 50.000 0.00 0.00 38.16 2.67
90 91 1.202927 CCTTCTCCAGTTCCTTGGCAA 60.203 52.381 0.00 0.00 38.16 4.52
92 93 0.322906 CCCTTCTCCAGTTCCTTGGC 60.323 60.000 0.00 0.00 38.16 4.52
93 94 0.329596 CCCCTTCTCCAGTTCCTTGG 59.670 60.000 0.00 0.00 39.70 3.61
95 96 1.662686 CTCCCCTTCTCCAGTTCCTT 58.337 55.000 0.00 0.00 0.00 3.36
96 97 0.252927 CCTCCCCTTCTCCAGTTCCT 60.253 60.000 0.00 0.00 0.00 3.36
97 98 0.547954 ACCTCCCCTTCTCCAGTTCC 60.548 60.000 0.00 0.00 0.00 3.62
98 99 0.906066 GACCTCCCCTTCTCCAGTTC 59.094 60.000 0.00 0.00 0.00 3.01
99 100 0.193574 TGACCTCCCCTTCTCCAGTT 59.806 55.000 0.00 0.00 0.00 3.16
100 101 0.193574 TTGACCTCCCCTTCTCCAGT 59.806 55.000 0.00 0.00 0.00 4.00
101 102 1.362224 TTTGACCTCCCCTTCTCCAG 58.638 55.000 0.00 0.00 0.00 3.86
102 103 1.916181 GATTTGACCTCCCCTTCTCCA 59.084 52.381 0.00 0.00 0.00 3.86
104 105 1.744114 GCGATTTGACCTCCCCTTCTC 60.744 57.143 0.00 0.00 0.00 2.87
105 106 0.253327 GCGATTTGACCTCCCCTTCT 59.747 55.000 0.00 0.00 0.00 2.85
106 107 0.253327 AGCGATTTGACCTCCCCTTC 59.747 55.000 0.00 0.00 0.00 3.46
107 108 0.253327 GAGCGATTTGACCTCCCCTT 59.747 55.000 0.00 0.00 0.00 3.95
108 109 1.908483 GAGCGATTTGACCTCCCCT 59.092 57.895 0.00 0.00 0.00 4.79
109 110 1.521681 CGAGCGATTTGACCTCCCC 60.522 63.158 0.00 0.00 0.00 4.81
110 111 1.521681 CCGAGCGATTTGACCTCCC 60.522 63.158 0.00 0.00 0.00 4.30
111 112 0.806492 GTCCGAGCGATTTGACCTCC 60.806 60.000 0.00 0.00 0.00 4.30
113 114 0.108615 CAGTCCGAGCGATTTGACCT 60.109 55.000 0.00 0.00 0.00 3.85
114 115 1.696832 GCAGTCCGAGCGATTTGACC 61.697 60.000 0.00 0.00 0.00 4.02
115 116 0.737715 AGCAGTCCGAGCGATTTGAC 60.738 55.000 0.00 0.00 37.01 3.18
116 117 0.037326 AAGCAGTCCGAGCGATTTGA 60.037 50.000 0.00 0.00 37.01 2.69
117 118 0.798776 AAAGCAGTCCGAGCGATTTG 59.201 50.000 0.00 0.00 37.01 2.32
118 119 1.079503 GAAAGCAGTCCGAGCGATTT 58.920 50.000 0.00 0.00 37.01 2.17
119 120 0.037326 TGAAAGCAGTCCGAGCGATT 60.037 50.000 0.00 0.00 37.01 3.34
122 123 0.459237 ATCTGAAAGCAGTCCGAGCG 60.459 55.000 0.00 0.00 42.84 5.03
123 124 1.731720 AATCTGAAAGCAGTCCGAGC 58.268 50.000 0.00 0.00 42.84 5.03
124 125 5.119898 GCATATAATCTGAAAGCAGTCCGAG 59.880 44.000 0.00 0.00 42.84 4.63
125 126 4.991056 GCATATAATCTGAAAGCAGTCCGA 59.009 41.667 0.00 0.00 42.84 4.55
126 127 4.143242 CGCATATAATCTGAAAGCAGTCCG 60.143 45.833 0.00 0.00 42.84 4.79
127 128 4.991056 TCGCATATAATCTGAAAGCAGTCC 59.009 41.667 0.00 0.00 42.84 3.85
128 129 5.923114 TCTCGCATATAATCTGAAAGCAGTC 59.077 40.000 0.00 0.00 42.84 3.51
129 130 5.847304 TCTCGCATATAATCTGAAAGCAGT 58.153 37.500 0.00 0.00 42.84 4.40
130 131 6.589139 TGATCTCGCATATAATCTGAAAGCAG 59.411 38.462 0.00 0.00 43.67 4.24
131 132 6.458210 TGATCTCGCATATAATCTGAAAGCA 58.542 36.000 0.00 0.00 0.00 3.91
132 133 6.957984 TGATCTCGCATATAATCTGAAAGC 57.042 37.500 0.00 0.00 0.00 3.51
133 134 9.201127 TCTTTGATCTCGCATATAATCTGAAAG 57.799 33.333 0.00 0.00 0.00 2.62
134 135 9.716531 ATCTTTGATCTCGCATATAATCTGAAA 57.283 29.630 0.00 0.00 0.00 2.69
135 136 9.148104 CATCTTTGATCTCGCATATAATCTGAA 57.852 33.333 0.00 0.00 0.00 3.02
136 137 7.277319 GCATCTTTGATCTCGCATATAATCTGA 59.723 37.037 0.00 0.00 0.00 3.27
137 138 7.278203 AGCATCTTTGATCTCGCATATAATCTG 59.722 37.037 0.00 0.00 0.00 2.90
138 139 7.329499 AGCATCTTTGATCTCGCATATAATCT 58.671 34.615 0.00 0.00 0.00 2.40
139 140 7.536895 AGCATCTTTGATCTCGCATATAATC 57.463 36.000 0.00 0.00 0.00 1.75
140 141 9.043079 CATAGCATCTTTGATCTCGCATATAAT 57.957 33.333 0.00 0.00 0.00 1.28
141 142 8.253113 TCATAGCATCTTTGATCTCGCATATAA 58.747 33.333 0.00 0.00 0.00 0.98
142 143 7.704047 GTCATAGCATCTTTGATCTCGCATATA 59.296 37.037 0.00 0.00 0.00 0.86
143 144 6.534436 GTCATAGCATCTTTGATCTCGCATAT 59.466 38.462 0.00 0.00 0.00 1.78
144 145 5.866092 GTCATAGCATCTTTGATCTCGCATA 59.134 40.000 0.00 0.00 0.00 3.14
145 146 4.689812 GTCATAGCATCTTTGATCTCGCAT 59.310 41.667 0.00 0.00 0.00 4.73
146 147 4.053983 GTCATAGCATCTTTGATCTCGCA 58.946 43.478 0.00 0.00 0.00 5.10
147 148 4.150274 CAGTCATAGCATCTTTGATCTCGC 59.850 45.833 0.00 0.00 0.00 5.03
148 149 5.288015 ACAGTCATAGCATCTTTGATCTCG 58.712 41.667 0.00 0.00 0.00 4.04
149 150 7.551035 AAACAGTCATAGCATCTTTGATCTC 57.449 36.000 0.00 0.00 0.00 2.75
150 151 7.934855 AAAACAGTCATAGCATCTTTGATCT 57.065 32.000 0.00 0.00 0.00 2.75
151 152 8.239314 TCAAAAACAGTCATAGCATCTTTGATC 58.761 33.333 0.00 0.00 0.00 2.92
152 153 8.114331 TCAAAAACAGTCATAGCATCTTTGAT 57.886 30.769 0.00 0.00 0.00 2.57
153 154 7.229306 ACTCAAAAACAGTCATAGCATCTTTGA 59.771 33.333 0.00 0.00 0.00 2.69
154 155 7.365741 ACTCAAAAACAGTCATAGCATCTTTG 58.634 34.615 0.00 0.00 0.00 2.77
155 156 7.516198 ACTCAAAAACAGTCATAGCATCTTT 57.484 32.000 0.00 0.00 0.00 2.52
156 157 6.128445 CGACTCAAAAACAGTCATAGCATCTT 60.128 38.462 1.08 0.00 40.42 2.40
157 158 5.349817 CGACTCAAAAACAGTCATAGCATCT 59.650 40.000 1.08 0.00 40.42 2.90
158 159 5.446473 CCGACTCAAAAACAGTCATAGCATC 60.446 44.000 1.08 0.00 40.42 3.91
159 160 4.393062 CCGACTCAAAAACAGTCATAGCAT 59.607 41.667 1.08 0.00 40.42 3.79
160 161 3.745975 CCGACTCAAAAACAGTCATAGCA 59.254 43.478 1.08 0.00 40.42 3.49
161 162 3.746492 ACCGACTCAAAAACAGTCATAGC 59.254 43.478 1.08 0.00 40.42 2.97
162 163 4.988540 TGACCGACTCAAAAACAGTCATAG 59.011 41.667 1.08 0.00 40.42 2.23
163 164 4.951254 TGACCGACTCAAAAACAGTCATA 58.049 39.130 1.08 0.00 40.42 2.15
164 165 3.804036 TGACCGACTCAAAAACAGTCAT 58.196 40.909 1.08 0.00 40.42 3.06
165 166 3.194861 CTGACCGACTCAAAAACAGTCA 58.805 45.455 1.08 0.00 40.42 3.41
166 167 3.195661 ACTGACCGACTCAAAAACAGTC 58.804 45.455 0.00 0.00 37.51 3.51
167 168 3.261981 ACTGACCGACTCAAAAACAGT 57.738 42.857 0.00 0.00 33.29 3.55
168 169 4.988540 TGATACTGACCGACTCAAAAACAG 59.011 41.667 0.00 0.00 0.00 3.16
169 170 4.951254 TGATACTGACCGACTCAAAAACA 58.049 39.130 0.00 0.00 0.00 2.83
170 171 5.917541 TTGATACTGACCGACTCAAAAAC 57.082 39.130 0.00 0.00 0.00 2.43
171 172 5.818336 TGTTTGATACTGACCGACTCAAAAA 59.182 36.000 0.00 0.00 37.51 1.94
172 173 5.235616 GTGTTTGATACTGACCGACTCAAAA 59.764 40.000 0.00 0.00 37.51 2.44
173 174 4.748102 GTGTTTGATACTGACCGACTCAAA 59.252 41.667 0.00 0.00 34.43 2.69
174 175 4.202172 TGTGTTTGATACTGACCGACTCAA 60.202 41.667 0.00 0.00 0.00 3.02
175 176 3.319689 TGTGTTTGATACTGACCGACTCA 59.680 43.478 0.00 0.00 0.00 3.41
176 177 3.909430 TGTGTTTGATACTGACCGACTC 58.091 45.455 0.00 0.00 0.00 3.36
177 178 4.537135 ATGTGTTTGATACTGACCGACT 57.463 40.909 0.00 0.00 0.00 4.18
178 179 4.565564 GGTATGTGTTTGATACTGACCGAC 59.434 45.833 0.00 0.00 0.00 4.79
179 180 4.382254 GGGTATGTGTTTGATACTGACCGA 60.382 45.833 0.00 0.00 0.00 4.69
180 181 3.869246 GGGTATGTGTTTGATACTGACCG 59.131 47.826 0.00 0.00 0.00 4.79
181 182 4.839121 TGGGTATGTGTTTGATACTGACC 58.161 43.478 0.00 0.00 0.00 4.02
182 183 4.876107 CCTGGGTATGTGTTTGATACTGAC 59.124 45.833 0.00 0.00 0.00 3.51
183 184 4.080582 CCCTGGGTATGTGTTTGATACTGA 60.081 45.833 3.97 0.00 0.00 3.41
184 185 4.080582 TCCCTGGGTATGTGTTTGATACTG 60.081 45.833 13.56 0.00 0.00 2.74
185 186 4.108570 TCCCTGGGTATGTGTTTGATACT 58.891 43.478 13.56 0.00 0.00 2.12
186 187 4.497291 TCCCTGGGTATGTGTTTGATAC 57.503 45.455 13.56 0.00 0.00 2.24
187 188 5.445069 CATTCCCTGGGTATGTGTTTGATA 58.555 41.667 20.78 0.00 0.00 2.15
188 189 4.280819 CATTCCCTGGGTATGTGTTTGAT 58.719 43.478 20.78 0.00 0.00 2.57
189 190 3.696045 CATTCCCTGGGTATGTGTTTGA 58.304 45.455 20.78 0.00 0.00 2.69
190 191 2.166254 GCATTCCCTGGGTATGTGTTTG 59.834 50.000 26.93 8.68 33.82 2.93
191 192 2.225242 TGCATTCCCTGGGTATGTGTTT 60.225 45.455 26.93 0.00 33.82 2.83
192 193 1.357420 TGCATTCCCTGGGTATGTGTT 59.643 47.619 26.93 0.00 33.82 3.32
193 194 0.998928 TGCATTCCCTGGGTATGTGT 59.001 50.000 26.93 0.00 33.82 3.72
194 195 2.142356 TTGCATTCCCTGGGTATGTG 57.858 50.000 26.93 16.11 33.82 3.21
195 196 2.244510 TGATTGCATTCCCTGGGTATGT 59.755 45.455 26.93 12.53 33.82 2.29
196 197 2.948115 TGATTGCATTCCCTGGGTATG 58.052 47.619 23.74 23.74 34.31 2.39
197 198 3.052642 AGTTGATTGCATTCCCTGGGTAT 60.053 43.478 13.56 5.71 0.00 2.73
198 199 2.311542 AGTTGATTGCATTCCCTGGGTA 59.688 45.455 13.56 2.87 0.00 3.69
199 200 1.077663 AGTTGATTGCATTCCCTGGGT 59.922 47.619 13.56 0.00 0.00 4.51
200 201 1.479323 CAGTTGATTGCATTCCCTGGG 59.521 52.381 6.33 6.33 0.00 4.45
201 202 1.479323 CCAGTTGATTGCATTCCCTGG 59.521 52.381 20.76 20.76 31.45 4.45
202 203 1.134907 GCCAGTTGATTGCATTCCCTG 60.135 52.381 14.04 14.04 0.00 4.45
203 204 1.188863 GCCAGTTGATTGCATTCCCT 58.811 50.000 6.16 0.00 0.00 4.20
204 205 0.896923 TGCCAGTTGATTGCATTCCC 59.103 50.000 6.16 0.00 0.00 3.97
205 206 1.273048 TGTGCCAGTTGATTGCATTCC 59.727 47.619 6.16 0.00 37.34 3.01
206 207 2.331194 GTGTGCCAGTTGATTGCATTC 58.669 47.619 1.55 1.55 37.34 2.67
207 208 1.336148 CGTGTGCCAGTTGATTGCATT 60.336 47.619 0.00 0.00 37.34 3.56
208 209 0.241749 CGTGTGCCAGTTGATTGCAT 59.758 50.000 0.00 0.00 37.34 3.96
209 210 0.817229 TCGTGTGCCAGTTGATTGCA 60.817 50.000 0.00 0.00 0.00 4.08
210 211 0.110056 CTCGTGTGCCAGTTGATTGC 60.110 55.000 0.00 0.00 0.00 3.56
211 212 0.110056 GCTCGTGTGCCAGTTGATTG 60.110 55.000 0.00 0.00 0.00 2.67
212 213 0.250467 AGCTCGTGTGCCAGTTGATT 60.250 50.000 0.00 0.00 0.00 2.57
213 214 0.608130 TAGCTCGTGTGCCAGTTGAT 59.392 50.000 0.00 0.00 0.00 2.57
214 215 0.038251 CTAGCTCGTGTGCCAGTTGA 60.038 55.000 0.00 0.00 0.00 3.18
215 216 1.630244 GCTAGCTCGTGTGCCAGTTG 61.630 60.000 7.70 0.00 0.00 3.16
216 217 1.374758 GCTAGCTCGTGTGCCAGTT 60.375 57.895 7.70 0.00 0.00 3.16
217 218 2.262915 GCTAGCTCGTGTGCCAGT 59.737 61.111 7.70 0.00 0.00 4.00
218 219 2.510238 GGCTAGCTCGTGTGCCAG 60.510 66.667 15.72 2.46 44.34 4.85
219 220 4.435436 CGGCTAGCTCGTGTGCCA 62.435 66.667 15.72 0.00 45.13 4.92
229 230 1.300542 CCTTGCTCTAGCGGCTAGC 60.301 63.158 28.08 22.07 45.83 3.42
230 231 1.300542 GCCTTGCTCTAGCGGCTAG 60.301 63.158 27.23 27.23 45.83 3.42
231 232 1.613317 TTGCCTTGCTCTAGCGGCTA 61.613 55.000 17.96 9.71 44.47 3.93
232 233 2.959484 TTGCCTTGCTCTAGCGGCT 61.959 57.895 17.96 7.98 44.47 5.52
233 234 2.436646 TTGCCTTGCTCTAGCGGC 60.437 61.111 12.39 12.39 44.44 6.53
234 235 1.375908 TGTTGCCTTGCTCTAGCGG 60.376 57.895 0.00 0.00 45.83 5.52
235 236 1.790387 GTGTTGCCTTGCTCTAGCG 59.210 57.895 0.00 0.00 45.83 4.26
236 237 0.670546 TCGTGTTGCCTTGCTCTAGC 60.671 55.000 0.00 0.00 42.50 3.42
237 238 1.662629 CATCGTGTTGCCTTGCTCTAG 59.337 52.381 0.00 0.00 0.00 2.43
238 239 1.275010 TCATCGTGTTGCCTTGCTCTA 59.725 47.619 0.00 0.00 0.00 2.43
239 240 0.035317 TCATCGTGTTGCCTTGCTCT 59.965 50.000 0.00 0.00 0.00 4.09
240 241 1.089920 ATCATCGTGTTGCCTTGCTC 58.910 50.000 0.00 0.00 0.00 4.26
241 242 1.538047 AATCATCGTGTTGCCTTGCT 58.462 45.000 0.00 0.00 0.00 3.91
242 243 1.987770 CAAATCATCGTGTTGCCTTGC 59.012 47.619 0.00 0.00 0.00 4.01
243 244 3.287312 ACAAATCATCGTGTTGCCTTG 57.713 42.857 0.00 0.00 0.00 3.61
244 245 4.320608 AAACAAATCATCGTGTTGCCTT 57.679 36.364 0.00 0.00 37.99 4.35
245 246 4.320608 AAAACAAATCATCGTGTTGCCT 57.679 36.364 0.00 0.00 37.99 4.75
246 247 4.505922 TCAAAAACAAATCATCGTGTTGCC 59.494 37.500 0.00 0.00 37.99 4.52
247 248 5.633996 TCAAAAACAAATCATCGTGTTGC 57.366 34.783 0.00 0.00 37.99 4.17
248 249 6.570789 GCAATCAAAAACAAATCATCGTGTTG 59.429 34.615 0.00 0.00 37.99 3.33
249 250 6.257411 TGCAATCAAAAACAAATCATCGTGTT 59.743 30.769 0.00 0.00 39.63 3.32
250 251 5.752472 TGCAATCAAAAACAAATCATCGTGT 59.248 32.000 0.00 0.00 0.00 4.49
251 252 6.212934 TGCAATCAAAAACAAATCATCGTG 57.787 33.333 0.00 0.00 0.00 4.35
252 253 6.841443 TTGCAATCAAAAACAAATCATCGT 57.159 29.167 0.00 0.00 0.00 3.73
253 254 6.298105 CGTTTGCAATCAAAAACAAATCATCG 59.702 34.615 0.00 0.00 43.12 3.84
254 255 7.125113 ACGTTTGCAATCAAAAACAAATCATC 58.875 30.769 0.00 0.00 43.12 2.92
255 256 7.014092 ACGTTTGCAATCAAAAACAAATCAT 57.986 28.000 0.00 0.00 43.12 2.45
256 257 6.414408 ACGTTTGCAATCAAAAACAAATCA 57.586 29.167 0.00 0.00 43.12 2.57
257 258 5.901336 GGACGTTTGCAATCAAAAACAAATC 59.099 36.000 0.00 0.00 43.12 2.17
258 259 5.220758 GGGACGTTTGCAATCAAAAACAAAT 60.221 36.000 0.00 0.00 43.12 2.32
259 260 4.093556 GGGACGTTTGCAATCAAAAACAAA 59.906 37.500 0.00 0.00 43.12 2.83
260 261 3.619038 GGGACGTTTGCAATCAAAAACAA 59.381 39.130 0.00 0.00 43.12 2.83
261 262 3.190874 GGGACGTTTGCAATCAAAAACA 58.809 40.909 0.00 0.00 43.12 2.83
262 263 2.542178 GGGGACGTTTGCAATCAAAAAC 59.458 45.455 0.00 0.00 43.12 2.43
263 264 2.827652 GGGGACGTTTGCAATCAAAAA 58.172 42.857 0.00 0.00 43.12 1.94
264 265 2.517650 GGGGACGTTTGCAATCAAAA 57.482 45.000 0.00 0.00 43.12 2.44
278 279 1.810030 CGCTTAACTGCTCGGGGAC 60.810 63.158 0.00 0.00 0.00 4.46
279 280 2.577059 CGCTTAACTGCTCGGGGA 59.423 61.111 0.00 0.00 0.00 4.81
280 281 2.511600 CCGCTTAACTGCTCGGGG 60.512 66.667 0.00 0.00 38.35 5.73
281 282 3.195698 GCCGCTTAACTGCTCGGG 61.196 66.667 0.00 0.00 41.96 5.14
282 283 3.195698 GGCCGCTTAACTGCTCGG 61.196 66.667 0.00 0.00 44.29 4.63
283 284 0.459585 TAAGGCCGCTTAACTGCTCG 60.460 55.000 0.00 0.00 0.00 5.03
284 285 1.599542 CATAAGGCCGCTTAACTGCTC 59.400 52.381 0.00 0.00 0.00 4.26
285 286 1.668419 CATAAGGCCGCTTAACTGCT 58.332 50.000 0.00 0.00 0.00 4.24
286 287 0.029433 GCATAAGGCCGCTTAACTGC 59.971 55.000 0.00 0.00 36.11 4.40
287 288 1.668419 AGCATAAGGCCGCTTAACTG 58.332 50.000 0.00 0.00 46.50 3.16
288 289 3.325135 AGATAGCATAAGGCCGCTTAACT 59.675 43.478 8.23 0.52 46.50 2.24
289 290 3.433615 CAGATAGCATAAGGCCGCTTAAC 59.566 47.826 8.23 1.58 46.50 2.01
290 291 3.323691 TCAGATAGCATAAGGCCGCTTAA 59.676 43.478 8.23 0.00 46.50 1.85
291 292 2.897326 TCAGATAGCATAAGGCCGCTTA 59.103 45.455 8.23 0.00 46.50 3.09
292 293 1.694150 TCAGATAGCATAAGGCCGCTT 59.306 47.619 8.23 0.00 46.50 4.68
293 294 1.342074 TCAGATAGCATAAGGCCGCT 58.658 50.000 8.02 8.02 46.50 5.52
294 295 2.169832 TTCAGATAGCATAAGGCCGC 57.830 50.000 0.00 0.00 46.50 6.53
295 296 3.668447 ACATTCAGATAGCATAAGGCCG 58.332 45.455 0.00 0.00 46.50 6.13
296 297 5.997746 TGTTACATTCAGATAGCATAAGGCC 59.002 40.000 0.00 0.00 46.50 5.19
297 298 6.073003 GGTGTTACATTCAGATAGCATAAGGC 60.073 42.308 0.00 0.00 45.30 4.35
298 299 7.426929 GGTGTTACATTCAGATAGCATAAGG 57.573 40.000 0.00 0.00 0.00 2.69
696 701 3.245443 TGGGCCCTCTTTTGCTAAATACA 60.245 43.478 25.70 0.00 0.00 2.29
697 702 3.361786 TGGGCCCTCTTTTGCTAAATAC 58.638 45.455 25.70 0.00 0.00 1.89
698 703 3.748645 TGGGCCCTCTTTTGCTAAATA 57.251 42.857 25.70 0.00 0.00 1.40
737 742 0.322816 CACTATGTGCTTGCCTGGGT 60.323 55.000 0.00 0.00 0.00 4.51
843 954 6.330278 GCTTGTTTCTGGACTTACTTTTTGT 58.670 36.000 0.00 0.00 0.00 2.83
983 1096 5.649557 TCAACATGAAAGGTGTTTCTGTTG 58.350 37.500 21.62 21.62 46.77 3.33
1029 1142 8.211030 AGATGATAATCACCAGGATGATAACA 57.789 34.615 0.00 1.79 38.40 2.41
1038 1151 4.711399 TGCAGAAGATGATAATCACCAGG 58.289 43.478 0.00 0.00 0.00 4.45
1209 1346 7.756722 AGAATCTGGCTTTCGTCAAATTTATTG 59.243 33.333 0.00 0.00 0.00 1.90
1487 1638 7.401246 AGAACTGAAAGGAAGATGCTCTTTAT 58.599 34.615 0.86 0.00 39.30 1.40
1492 1643 4.831107 AGAGAACTGAAAGGAAGATGCTC 58.169 43.478 0.00 0.00 39.30 4.26
1493 1644 4.906747 AGAGAACTGAAAGGAAGATGCT 57.093 40.909 0.00 0.00 39.30 3.79
1500 1651 6.127591 CGATCCTTAGAAGAGAACTGAAAGGA 60.128 42.308 3.58 3.58 40.26 3.36
1881 5203 6.652481 CGAGCATATTATCAAGATTGTTCCCT 59.348 38.462 0.00 0.00 0.00 4.20
1982 5304 0.451783 GGGCCTATTTTCACTGCACG 59.548 55.000 0.84 0.00 0.00 5.34
2217 5560 9.810545 CTAAAGGAAAAGGTTAAATGAACAACA 57.189 29.630 0.00 0.00 40.09 3.33
2235 5578 6.373216 CCGAAATCCACATACAACTAAAGGAA 59.627 38.462 0.00 0.00 0.00 3.36
2437 5802 3.552068 GGCGCAGTTTCAATACCAAACTT 60.552 43.478 10.83 0.00 41.25 2.66
2579 5944 1.837051 AAGTGCAGAGACCCCGACA 60.837 57.895 0.00 0.00 0.00 4.35
2624 6597 7.440556 AGCAAGTGATGTATGTATTCTCATGAC 59.559 37.037 0.00 0.00 0.00 3.06
2692 7386 7.626084 TCCAAATGTAGGTTAGGGATCTAGAAA 59.374 37.037 0.00 0.00 0.00 2.52
2794 7752 1.299541 CAAGTGAGGGTGTGTGTGTC 58.700 55.000 0.00 0.00 0.00 3.67
2820 7806 2.925170 ACGTCTGCTCCCTGCCTT 60.925 61.111 0.00 0.00 42.00 4.35
2893 7885 0.672342 GGACATGGCATCATCCTTGC 59.328 55.000 16.72 0.00 39.41 4.01
2894 7886 2.061509 TGGACATGGCATCATCCTTG 57.938 50.000 21.98 4.90 37.32 3.61
2920 7912 1.490490 GGACATCCATGCAGGGACTTA 59.510 52.381 24.62 0.00 40.44 2.24
2957 7974 6.173339 GTTCTTCAATCAGGATCCTAACACA 58.827 40.000 15.67 0.00 0.00 3.72
2958 7975 6.173339 TGTTCTTCAATCAGGATCCTAACAC 58.827 40.000 15.67 3.27 0.00 3.32
2968 7985 8.503458 AGATCACTAATTGTTCTTCAATCAGG 57.497 34.615 0.00 0.00 44.85 3.86
2972 7989 9.307121 CGAGTAGATCACTAATTGTTCTTCAAT 57.693 33.333 0.00 0.00 42.12 2.57
2986 8003 9.214957 CTTCTAGATTATGTCGAGTAGATCACT 57.785 37.037 0.00 0.00 41.47 3.41
2987 8004 8.995220 ACTTCTAGATTATGTCGAGTAGATCAC 58.005 37.037 0.00 0.00 33.34 3.06
3032 8058 2.731976 CGTACTCAGGTTGCTGAACTTC 59.268 50.000 0.00 0.00 32.43 3.01
3052 8079 3.750373 AATTGGATCCCCGCGGTCG 62.750 63.158 26.12 14.11 34.29 4.79
3059 8086 2.521708 CCGCCCAATTGGATCCCC 60.522 66.667 26.60 7.41 37.39 4.81
3073 8100 1.485124 AATTCCCCTTCCAATTCCGC 58.515 50.000 0.00 0.00 0.00 5.54
3079 8106 4.300345 TCGGTCTATAATTCCCCTTCCAA 58.700 43.478 0.00 0.00 0.00 3.53
3089 8119 4.989168 GCCTTCGTCATTCGGTCTATAATT 59.011 41.667 0.00 0.00 40.32 1.40
3092 8122 2.031420 CGCCTTCGTCATTCGGTCTATA 60.031 50.000 0.00 0.00 40.32 1.31
3124 8154 3.905437 TTGCCCCGCGGTAAGGAAC 62.905 63.158 26.12 6.98 0.00 3.62
3125 8155 3.615509 CTTGCCCCGCGGTAAGGAA 62.616 63.158 26.12 17.99 45.46 3.36
3126 8156 4.090588 CTTGCCCCGCGGTAAGGA 62.091 66.667 26.12 11.02 45.46 3.36
3129 8159 4.090588 CTCCTTGCCCCGCGGTAA 62.091 66.667 26.12 14.95 32.19 2.85
3134 8164 4.168291 CTCTCCTCCTTGCCCCGC 62.168 72.222 0.00 0.00 0.00 6.13
3135 8165 3.474570 CCTCTCCTCCTTGCCCCG 61.475 72.222 0.00 0.00 0.00 5.73
3136 8166 3.093172 CCCTCTCCTCCTTGCCCC 61.093 72.222 0.00 0.00 0.00 5.80
3137 8167 2.041265 TCCCTCTCCTCCTTGCCC 59.959 66.667 0.00 0.00 0.00 5.36
3138 8168 1.306568 ACTCCCTCTCCTCCTTGCC 60.307 63.158 0.00 0.00 0.00 4.52
3139 8169 1.334384 GGACTCCCTCTCCTCCTTGC 61.334 65.000 0.00 0.00 0.00 4.01
3140 8170 1.040339 CGGACTCCCTCTCCTCCTTG 61.040 65.000 0.00 0.00 0.00 3.61
3141 8171 1.308326 CGGACTCCCTCTCCTCCTT 59.692 63.158 0.00 0.00 0.00 3.36
3142 8172 3.011885 CGGACTCCCTCTCCTCCT 58.988 66.667 0.00 0.00 0.00 3.69
3143 8173 2.835895 GCGGACTCCCTCTCCTCC 60.836 72.222 0.00 0.00 0.00 4.30
3144 8174 2.835895 GGCGGACTCCCTCTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
3145 8175 4.824515 CGGCGGACTCCCTCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
3146 8176 4.816984 TCGGCGGACTCCCTCTCC 62.817 72.222 7.21 0.00 0.00 3.71
3147 8177 3.213402 CTCGGCGGACTCCCTCTC 61.213 72.222 7.21 0.00 0.00 3.20
3148 8178 3.729489 TCTCGGCGGACTCCCTCT 61.729 66.667 7.21 0.00 0.00 3.69
3149 8179 3.519930 GTCTCGGCGGACTCCCTC 61.520 72.222 17.47 0.00 33.81 4.30
3153 8183 4.176851 GACGGTCTCGGCGGACTC 62.177 72.222 21.77 12.59 41.39 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.