Multiple sequence alignment - TraesCS6B01G100900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G100900 chr6B 100.000 3194 0 0 1 3194 79274380 79277573 0.000000e+00 5899
1 TraesCS6B01G100900 chr6B 98.100 1000 16 2 2197 3193 51501633 51500634 0.000000e+00 1738
2 TraesCS6B01G100900 chr6B 97.998 999 16 3 2197 3194 52388645 52387650 0.000000e+00 1731
3 TraesCS6B01G100900 chr6B 97.600 1000 16 3 2196 3194 352157263 352158255 0.000000e+00 1707
4 TraesCS6B01G100900 chr6B 94.076 844 30 5 2 827 534227377 534226536 0.000000e+00 1264
5 TraesCS6B01G100900 chr6B 77.202 1215 227 33 1010 2194 61789925 61791119 0.000000e+00 664
6 TraesCS6B01G100900 chr6B 73.597 1212 262 40 998 2175 79847025 79848212 2.290000e-111 412
7 TraesCS6B01G100900 chr6B 87.374 198 25 0 1036 1233 62119023 62119220 8.910000e-56 228
8 TraesCS6B01G100900 chr6B 76.727 275 54 6 1814 2080 51310793 51310521 9.230000e-31 145
9 TraesCS6B01G100900 chr6B 76.173 277 59 6 1810 2081 51332820 51332546 4.300000e-29 139
10 TraesCS6B01G100900 chrUn 92.280 1386 84 16 823 2202 27884807 27883439 0.000000e+00 1945
11 TraesCS6B01G100900 chrUn 97.802 1001 19 2 2197 3194 373409169 373408169 0.000000e+00 1724
12 TraesCS6B01G100900 chrUn 97.702 1001 20 2 2197 3194 17482905 17483905 0.000000e+00 1718
13 TraesCS6B01G100900 chrUn 74.836 1220 244 42 1012 2192 112304510 112303315 7.960000e-136 494
14 TraesCS6B01G100900 chrUn 75.137 1094 213 45 1009 2074 27364872 27365934 2.900000e-125 459
15 TraesCS6B01G100900 chrUn 74.241 1219 253 46 1009 2192 27743543 27744735 3.760000e-124 455
16 TraesCS6B01G100900 chrUn 72.674 1204 258 42 1041 2193 27447747 27448930 5.110000e-88 335
17 TraesCS6B01G100900 chr7A 98.104 1002 15 1 2197 3194 111883888 111882887 0.000000e+00 1742
18 TraesCS6B01G100900 chr7A 97.998 999 17 3 2197 3194 9174668 9173672 0.000000e+00 1731
19 TraesCS6B01G100900 chr7A 89.549 842 61 10 1 823 24423703 24424536 0.000000e+00 1042
20 TraesCS6B01G100900 chr7A 86.066 366 43 5 463 823 16930020 16930382 1.390000e-103 387
21 TraesCS6B01G100900 chr2A 97.505 1002 23 2 2195 3194 40226842 40227843 0.000000e+00 1711
22 TraesCS6B01G100900 chr6A 97.324 1009 22 4 2190 3194 560423290 560422283 0.000000e+00 1709
23 TraesCS6B01G100900 chr6A 93.759 721 45 0 1475 2195 46062192 46062912 0.000000e+00 1083
24 TraesCS6B01G100900 chr6A 91.791 670 47 6 823 1490 46054289 46054952 0.000000e+00 926
25 TraesCS6B01G100900 chr6A 74.120 1221 270 37 998 2193 46716802 46715603 2.240000e-126 462
26 TraesCS6B01G100900 chr6A 74.501 1153 218 52 1089 2192 45667538 45668663 6.330000e-117 431
27 TraesCS6B01G100900 chr6A 79.773 529 100 7 1666 2192 46295807 46295284 8.360000e-101 377
28 TraesCS6B01G100900 chr6A 83.813 278 36 8 1014 1291 34009352 34009620 4.090000e-64 255
29 TraesCS6B01G100900 chr6A 92.105 76 6 0 823 898 46053397 46053472 1.210000e-19 108
30 TraesCS6B01G100900 chr2B 94.431 826 40 3 3 823 195924618 195925442 0.000000e+00 1266
31 TraesCS6B01G100900 chr2B 90.557 826 66 10 1 820 594259906 594259087 0.000000e+00 1083
32 TraesCS6B01G100900 chr4A 94.431 826 30 2 2 811 710418353 710417528 0.000000e+00 1256
33 TraesCS6B01G100900 chr5B 93.795 838 35 3 2 823 510562070 510562906 0.000000e+00 1243
34 TraesCS6B01G100900 chr4B 93.128 844 39 5 3 829 45203572 45204413 0.000000e+00 1219
35 TraesCS6B01G100900 chr5D 90.974 842 54 9 3 824 391047226 391046387 0.000000e+00 1114
36 TraesCS6B01G100900 chr3D 89.467 845 59 15 1 823 457395898 457396734 0.000000e+00 1040
37 TraesCS6B01G100900 chr3D 91.192 579 35 5 1 563 896246 896824 0.000000e+00 773
38 TraesCS6B01G100900 chr4D 90.500 800 53 9 1 778 302347361 302348159 0.000000e+00 1035
39 TraesCS6B01G100900 chr4D 91.691 698 39 7 1 683 280175134 280174441 0.000000e+00 950


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G100900 chr6B 79274380 79277573 3193 False 5899 5899 100.000 1 3194 1 chr6B.!!$F3 3193
1 TraesCS6B01G100900 chr6B 51500634 51501633 999 True 1738 1738 98.100 2197 3193 1 chr6B.!!$R3 996
2 TraesCS6B01G100900 chr6B 52387650 52388645 995 True 1731 1731 97.998 2197 3194 1 chr6B.!!$R4 997
3 TraesCS6B01G100900 chr6B 352157263 352158255 992 False 1707 1707 97.600 2196 3194 1 chr6B.!!$F5 998
4 TraesCS6B01G100900 chr6B 534226536 534227377 841 True 1264 1264 94.076 2 827 1 chr6B.!!$R5 825
5 TraesCS6B01G100900 chr6B 61789925 61791119 1194 False 664 664 77.202 1010 2194 1 chr6B.!!$F1 1184
6 TraesCS6B01G100900 chr6B 79847025 79848212 1187 False 412 412 73.597 998 2175 1 chr6B.!!$F4 1177
7 TraesCS6B01G100900 chrUn 27883439 27884807 1368 True 1945 1945 92.280 823 2202 1 chrUn.!!$R1 1379
8 TraesCS6B01G100900 chrUn 373408169 373409169 1000 True 1724 1724 97.802 2197 3194 1 chrUn.!!$R3 997
9 TraesCS6B01G100900 chrUn 17482905 17483905 1000 False 1718 1718 97.702 2197 3194 1 chrUn.!!$F1 997
10 TraesCS6B01G100900 chrUn 112303315 112304510 1195 True 494 494 74.836 1012 2192 1 chrUn.!!$R2 1180
11 TraesCS6B01G100900 chrUn 27364872 27365934 1062 False 459 459 75.137 1009 2074 1 chrUn.!!$F2 1065
12 TraesCS6B01G100900 chrUn 27743543 27744735 1192 False 455 455 74.241 1009 2192 1 chrUn.!!$F4 1183
13 TraesCS6B01G100900 chrUn 27447747 27448930 1183 False 335 335 72.674 1041 2193 1 chrUn.!!$F3 1152
14 TraesCS6B01G100900 chr7A 111882887 111883888 1001 True 1742 1742 98.104 2197 3194 1 chr7A.!!$R2 997
15 TraesCS6B01G100900 chr7A 9173672 9174668 996 True 1731 1731 97.998 2197 3194 1 chr7A.!!$R1 997
16 TraesCS6B01G100900 chr7A 24423703 24424536 833 False 1042 1042 89.549 1 823 1 chr7A.!!$F2 822
17 TraesCS6B01G100900 chr2A 40226842 40227843 1001 False 1711 1711 97.505 2195 3194 1 chr2A.!!$F1 999
18 TraesCS6B01G100900 chr6A 560422283 560423290 1007 True 1709 1709 97.324 2190 3194 1 chr6A.!!$R3 1004
19 TraesCS6B01G100900 chr6A 46062192 46062912 720 False 1083 1083 93.759 1475 2195 1 chr6A.!!$F3 720
20 TraesCS6B01G100900 chr6A 46053397 46054952 1555 False 517 926 91.948 823 1490 2 chr6A.!!$F4 667
21 TraesCS6B01G100900 chr6A 46715603 46716802 1199 True 462 462 74.120 998 2193 1 chr6A.!!$R2 1195
22 TraesCS6B01G100900 chr6A 45667538 45668663 1125 False 431 431 74.501 1089 2192 1 chr6A.!!$F2 1103
23 TraesCS6B01G100900 chr6A 46295284 46295807 523 True 377 377 79.773 1666 2192 1 chr6A.!!$R1 526
24 TraesCS6B01G100900 chr2B 195924618 195925442 824 False 1266 1266 94.431 3 823 1 chr2B.!!$F1 820
25 TraesCS6B01G100900 chr2B 594259087 594259906 819 True 1083 1083 90.557 1 820 1 chr2B.!!$R1 819
26 TraesCS6B01G100900 chr4A 710417528 710418353 825 True 1256 1256 94.431 2 811 1 chr4A.!!$R1 809
27 TraesCS6B01G100900 chr5B 510562070 510562906 836 False 1243 1243 93.795 2 823 1 chr5B.!!$F1 821
28 TraesCS6B01G100900 chr4B 45203572 45204413 841 False 1219 1219 93.128 3 829 1 chr4B.!!$F1 826
29 TraesCS6B01G100900 chr5D 391046387 391047226 839 True 1114 1114 90.974 3 824 1 chr5D.!!$R1 821
30 TraesCS6B01G100900 chr3D 457395898 457396734 836 False 1040 1040 89.467 1 823 1 chr3D.!!$F2 822
31 TraesCS6B01G100900 chr3D 896246 896824 578 False 773 773 91.192 1 563 1 chr3D.!!$F1 562
32 TraesCS6B01G100900 chr4D 302347361 302348159 798 False 1035 1035 90.500 1 778 1 chr4D.!!$F1 777
33 TraesCS6B01G100900 chr4D 280174441 280175134 693 True 950 950 91.691 1 683 1 chr4D.!!$R1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 747 0.110486 AGACAAATCCCGGTTGCAGT 59.890 50.0 0.00 0.0 0.0 4.40 F
770 812 0.688487 ACCGGGATTTCGACTTGGAA 59.312 50.0 6.32 0.0 0.0 3.53 F
929 1866 1.226746 GACCCACTTTCTTCCACACG 58.773 55.0 0.00 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 2761 0.251077 AAGGCCAGGCTCTGTTTCTG 60.251 55.000 12.43 0.0 0.00 3.02 R
2025 3054 1.143969 GGACCATAAAGACGACGCCG 61.144 60.000 0.00 0.0 42.50 6.46 R
2440 3475 1.153628 GACGTTAGCCGCTGGTCAT 60.154 57.895 2.16 0.0 41.42 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 93 3.868077 CCACCTTTTCATTTTTGTTCGCA 59.132 39.130 0.00 0.00 0.00 5.10
329 342 5.793675 TGCAAATTTTGTTCGTGTTTCATG 58.206 33.333 10.65 0.00 0.00 3.07
335 355 7.588143 ATTTTGTTCGTGTTTCATGTTGAAA 57.412 28.000 0.00 0.00 43.37 2.69
336 356 7.588143 TTTTGTTCGTGTTTCATGTTGAAAT 57.412 28.000 6.01 0.00 46.55 2.17
337 357 6.804534 TTGTTCGTGTTTCATGTTGAAATC 57.195 33.333 6.01 3.11 46.55 2.17
338 358 5.884771 TGTTCGTGTTTCATGTTGAAATCA 58.115 33.333 6.01 4.27 46.55 2.57
339 359 6.325596 TGTTCGTGTTTCATGTTGAAATCAA 58.674 32.000 6.01 0.00 46.55 2.57
340 360 6.808704 TGTTCGTGTTTCATGTTGAAATCAAA 59.191 30.769 6.01 0.00 46.55 2.69
341 361 7.329471 TGTTCGTGTTTCATGTTGAAATCAAAA 59.671 29.630 6.01 0.00 46.55 2.44
517 550 3.623510 GTGTAGTGGCTAATGGCTCTTTC 59.376 47.826 0.00 0.00 41.65 2.62
539 572 2.987547 TCTCCGTGGTCGTGGGAC 60.988 66.667 0.00 0.00 42.66 4.46
705 747 0.110486 AGACAAATCCCGGTTGCAGT 59.890 50.000 0.00 0.00 0.00 4.40
722 764 6.015772 GGTTGCAGTCAGGGTTTAATTTAGAA 60.016 38.462 0.00 0.00 0.00 2.10
726 768 5.935789 CAGTCAGGGTTTAATTTAGAACGGA 59.064 40.000 0.00 0.00 0.00 4.69
770 812 0.688487 ACCGGGATTTCGACTTGGAA 59.312 50.000 6.32 0.00 0.00 3.53
779 821 5.858581 GGATTTCGACTTGGAAGTTCATTTG 59.141 40.000 5.01 0.00 39.88 2.32
801 843 4.080807 TGGCCGAACACCTATAAATTCAGA 60.081 41.667 0.00 0.00 0.00 3.27
869 1803 2.613474 CCCAGGGAATACAACGAAACGA 60.613 50.000 0.00 0.00 0.00 3.85
898 1832 6.149633 GGACAAAAATAGTGAGCGTGATTTT 58.850 36.000 0.00 0.00 33.92 1.82
929 1866 1.226746 GACCCACTTTCTTCCACACG 58.773 55.000 0.00 0.00 0.00 4.49
991 1931 2.127708 GAGAGGAGAGAGGAGAGAGGT 58.872 57.143 0.00 0.00 0.00 3.85
992 1932 2.509964 GAGAGGAGAGAGGAGAGAGGTT 59.490 54.545 0.00 0.00 0.00 3.50
993 1933 2.242196 AGAGGAGAGAGGAGAGAGGTTG 59.758 54.545 0.00 0.00 0.00 3.77
994 1934 2.241176 GAGGAGAGAGGAGAGAGGTTGA 59.759 54.545 0.00 0.00 0.00 3.18
995 1935 2.242196 AGGAGAGAGGAGAGAGGTTGAG 59.758 54.545 0.00 0.00 0.00 3.02
996 1936 2.241176 GGAGAGAGGAGAGAGGTTGAGA 59.759 54.545 0.00 0.00 0.00 3.27
1007 1947 4.017037 AGAGAGGTTGAGAGAGATGGGTAA 60.017 45.833 0.00 0.00 0.00 2.85
1099 2048 3.360423 ATCCTCCTCCGCCTCGACA 62.360 63.158 0.00 0.00 0.00 4.35
1234 2183 1.697432 TCCTCGGTGTCCTTGACAAAT 59.303 47.619 0.00 0.00 44.49 2.32
1239 2188 4.927422 TCGGTGTCCTTGACAAATTTTTC 58.073 39.130 0.00 0.00 44.49 2.29
1292 2257 3.792736 CCCCAATCGCTTCCCGGA 61.793 66.667 0.73 0.00 37.59 5.14
1557 2562 1.901591 CAGACAAAGGCAGACCACAT 58.098 50.000 0.00 0.00 39.06 3.21
1592 2597 8.506168 TTCTTGTGTGTTTACTCTTCAAAGAT 57.494 30.769 0.00 0.00 33.93 2.40
1595 2600 6.277605 TGTGTGTTTACTCTTCAAAGATCGA 58.722 36.000 0.00 0.00 33.93 3.59
1621 2626 1.541233 GGGGTGAGCTCATATCAACGG 60.541 57.143 21.47 0.00 35.11 4.44
1707 2727 3.045601 TCTCTTTACTGGCTGCTTGTC 57.954 47.619 0.00 0.00 0.00 3.18
1741 2761 7.700322 TCTGTAATTCTCGAGTTTGATATGC 57.300 36.000 13.13 0.00 0.00 3.14
1930 2956 2.844348 TGGGTCCTTGGAAGAACTATCC 59.156 50.000 0.00 0.00 37.48 2.59
2017 3046 6.415867 CGAGGAAAATAATGTGATGTTCATGC 59.584 38.462 0.00 0.00 0.00 4.06
2025 3054 0.810648 TGATGTTCATGCGGAAAGGC 59.189 50.000 0.00 0.00 37.23 4.35
2123 3152 5.129634 TGAGCCATTTGAAAGTGTCTACAA 58.870 37.500 0.00 0.00 0.00 2.41
2148 3183 3.627577 CAGGTAATACCATGCCTTCACAC 59.372 47.826 12.54 0.00 41.95 3.82
2151 3186 5.131977 AGGTAATACCATGCCTTCACACATA 59.868 40.000 12.54 0.00 41.95 2.29
2152 3187 6.003950 GGTAATACCATGCCTTCACACATAT 58.996 40.000 4.24 0.00 38.42 1.78
2153 3188 6.149474 GGTAATACCATGCCTTCACACATATC 59.851 42.308 4.24 0.00 38.42 1.63
2154 3189 2.564771 ACCATGCCTTCACACATATCG 58.435 47.619 0.00 0.00 0.00 2.92
2162 3197 8.886719 CATGCCTTCACACATATCGATTATAAT 58.113 33.333 1.71 0.00 0.00 1.28
2322 3357 3.524606 CCGTCGGGCTACCACGAT 61.525 66.667 2.34 0.00 41.00 3.73
2520 3555 2.140065 ATATCGTCATGCCACGTCAG 57.860 50.000 6.81 0.00 40.79 3.51
3037 4084 2.097825 GGTCTACACGGTGGATGTAGT 58.902 52.381 13.48 0.00 46.44 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 52 5.838521 AGGTGGTGGAACATTATTCAAACTT 59.161 36.000 0.00 0.00 44.52 2.66
89 93 9.651913 AAATTTGTATTCTACGCATTTTGGAAT 57.348 25.926 0.00 0.00 0.00 3.01
104 109 7.068341 TCAAAATGCGCACAAAATTTGTATTC 58.932 30.769 14.90 4.12 43.23 1.75
204 212 5.343249 ACACTTTTTGAGATTGTGAACAGC 58.657 37.500 0.00 0.00 33.41 4.40
261 271 6.582437 ACGCGAACAATTTTCAAAGAAAAT 57.418 29.167 15.93 10.92 0.00 1.82
263 273 6.396459 AAACGCGAACAATTTTCAAAGAAA 57.604 29.167 15.93 0.00 0.00 2.52
266 276 5.447530 CCAAAAACGCGAACAATTTTCAAAG 59.552 36.000 15.93 0.56 0.00 2.77
270 280 4.763594 TCCAAAAACGCGAACAATTTTC 57.236 36.364 15.93 0.00 0.00 2.29
335 355 9.665719 AAAGTGAAGGTGTTTTGTAATTTTGAT 57.334 25.926 0.00 0.00 0.00 2.57
336 356 9.495572 AAAAGTGAAGGTGTTTTGTAATTTTGA 57.504 25.926 0.00 0.00 0.00 2.69
337 357 9.753669 GAAAAGTGAAGGTGTTTTGTAATTTTG 57.246 29.630 0.00 0.00 0.00 2.44
338 358 8.941977 GGAAAAGTGAAGGTGTTTTGTAATTTT 58.058 29.630 0.00 0.00 0.00 1.82
339 359 8.097662 TGGAAAAGTGAAGGTGTTTTGTAATTT 58.902 29.630 0.00 0.00 0.00 1.82
340 360 7.616313 TGGAAAAGTGAAGGTGTTTTGTAATT 58.384 30.769 0.00 0.00 0.00 1.40
341 361 7.176589 TGGAAAAGTGAAGGTGTTTTGTAAT 57.823 32.000 0.00 0.00 0.00 1.89
467 500 3.442273 ACAACAACTTGAACATCACGGTT 59.558 39.130 0.00 0.00 0.00 4.44
517 550 1.372997 CACGACCACGGAGACCAAG 60.373 63.158 0.00 0.00 44.46 3.61
588 623 3.436496 CGCCGTTGTTTTGTTTCCTTTA 58.564 40.909 0.00 0.00 0.00 1.85
705 747 7.576098 GCAATTCCGTTCTAAATTAAACCCTGA 60.576 37.037 0.00 0.00 0.00 3.86
722 764 1.613437 CCCTGAACTTTGCAATTCCGT 59.387 47.619 0.00 0.00 0.00 4.69
726 768 1.761784 TGCACCCTGAACTTTGCAATT 59.238 42.857 0.00 0.00 41.90 2.32
770 812 0.958822 GGTGTTCGGCCAAATGAACT 59.041 50.000 18.36 0.00 43.73 3.01
779 821 4.448210 TCTGAATTTATAGGTGTTCGGCC 58.552 43.478 0.00 0.00 0.00 6.13
811 853 6.596106 ACGTGCTTTAATTTGGAAAAAGGTTT 59.404 30.769 0.00 0.00 32.14 3.27
869 1803 3.058501 CGCTCACTATTTTTGTCCCGTTT 60.059 43.478 0.00 0.00 0.00 3.60
929 1866 0.315251 GGCAGCCCAAAGAAAGTGAC 59.685 55.000 0.00 0.00 0.00 3.67
991 1931 3.375699 GGAGGTTACCCATCTCTCTCAA 58.624 50.000 0.00 0.00 0.00 3.02
992 1932 2.687014 CGGAGGTTACCCATCTCTCTCA 60.687 54.545 0.00 0.00 0.00 3.27
993 1933 1.957877 CGGAGGTTACCCATCTCTCTC 59.042 57.143 0.00 0.00 0.00 3.20
994 1934 2.030045 GCGGAGGTTACCCATCTCTCT 61.030 57.143 0.00 0.00 0.00 3.10
995 1935 0.389757 GCGGAGGTTACCCATCTCTC 59.610 60.000 0.00 0.00 0.00 3.20
996 1936 1.049289 GGCGGAGGTTACCCATCTCT 61.049 60.000 0.00 0.00 0.00 3.10
1239 2188 4.052229 AAGGACAGGTCGCCGTCG 62.052 66.667 11.40 0.00 31.46 5.12
1470 2457 0.537143 GCACGGCCCCATTGATCATA 60.537 55.000 0.00 0.00 0.00 2.15
1516 2515 0.909610 ATCACCACGACCACCTGGAT 60.910 55.000 0.00 0.00 38.94 3.41
1557 2562 1.070134 ACACACAAGAAAGCTCGCCTA 59.930 47.619 0.00 0.00 0.00 3.93
1621 2626 6.544197 TCAGTCAGACTCATAGATGGAAGTAC 59.456 42.308 0.00 0.00 0.00 2.73
1707 2727 5.348986 TCGAGAATTACAGAAATCTTCCCG 58.651 41.667 0.00 0.00 0.00 5.14
1741 2761 0.251077 AAGGCCAGGCTCTGTTTCTG 60.251 55.000 12.43 0.00 0.00 3.02
1930 2956 3.008485 AGGAAAGGTAGCTTCTCCAGTTG 59.992 47.826 24.79 0.00 0.00 3.16
2025 3054 1.143969 GGACCATAAAGACGACGCCG 61.144 60.000 0.00 0.00 42.50 6.46
2082 3111 4.202284 GGCTCATAATAAGTAACGGGGTCA 60.202 45.833 0.00 0.00 0.00 4.02
2123 3152 3.265737 TGAAGGCATGGTATTACCTGTGT 59.734 43.478 13.90 0.00 39.58 3.72
2135 3164 2.837498 TCGATATGTGTGAAGGCATGG 58.163 47.619 0.00 0.00 0.00 3.66
2440 3475 1.153628 GACGTTAGCCGCTGGTCAT 60.154 57.895 2.16 0.00 41.42 3.06
2800 3844 3.880610 ACGTGCTCGAAAAATACAAACC 58.119 40.909 16.04 0.00 40.62 3.27
2801 3845 6.956393 TTAACGTGCTCGAAAAATACAAAC 57.044 33.333 16.04 0.00 40.62 2.93
2802 3846 9.828852 ATTATTAACGTGCTCGAAAAATACAAA 57.171 25.926 16.04 3.87 40.62 2.83
2803 3847 9.268255 CATTATTAACGTGCTCGAAAAATACAA 57.732 29.630 16.04 4.46 40.62 2.41
2805 3849 8.721476 CACATTATTAACGTGCTCGAAAAATAC 58.279 33.333 16.04 0.00 40.62 1.89
2807 3851 7.719689 CACATTATTAACGTGCTCGAAAAAT 57.280 32.000 16.04 12.47 40.62 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.