AutoCloner

Multiple sequence alignment - TraesCS6B01G100700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G100700	chr6B	100.000	2507	0	0	1	2507	79036273	79038779	0.000000e+00	4630.0
1	TraesCS6B01G100700	chr6B	77.019	1436	286	40	485	1890	15225594	15224173	0.000000e+00	784.0
2	TraesCS6B01G100700	chr6B	84.005	769	90	28	195	952	62223133	62223879	0.000000e+00	708.0
3	TraesCS6B01G100700	chr6B	76.772	1171	241	24	473	1628	14311254	14312408	5.890000e-176	627.0
4	TraesCS6B01G100700	chr6B	77.355	1104	219	27	423	1508	52568177	52567087	2.120000e-175	625.0
5	TraesCS6B01G100700	chr6B	76.642	1096	214	35	473	1544	16608092	16609169	3.620000e-158	568.0
6	TraesCS6B01G100700	chr6B	76.000	1100	230	25	470	1557	26512288	26513365	2.840000e-149	538.0
7	TraesCS6B01G100700	chr6B	81.847	314	51	6	1306	1616	62223878	62224188	2.470000e-65	259.0
8	TraesCS6B01G100700	chr6B	86.667	90	6	3	2419	2507	665711351	665711435	7.380000e-16	95.3
9	TraesCS6B01G100700	chr6B	85.556	90	9	1	2418	2507	576860958	576861043	9.550000e-15	91.6
10	TraesCS6B01G100700	chrUn	95.813	2484	72	14	37	2507	27946448	27943984	0.000000e+00	3982.0
11	TraesCS6B01G100700	chr6D	87.127	536	53	9	211	742	28623912	28623389	5.970000e-166	593.0
12	TraesCS6B01G100700	chr6D	76.258	1133	245	22	485	1606	14727182	14726063	4.650000e-162	580.0
13	TraesCS6B01G100700	chr6D	75.229	981	220	20	635	1606	14442271	14443237	6.360000e-121	444.0
14	TraesCS6B01G100700	chr6D	75.827	786	163	22	874	1647	15352480	15351710	8.470000e-100	374.0
15	TraesCS6B01G100700	chr6D	75.706	531	81	26	1383	1890	7679993	7680498	3.250000e-54	222.0
16	TraesCS6B01G100700	chr6D	77.746	346	48	20	1569	1890	7654189	7654529	4.260000e-43	185.0
17	TraesCS6B01G100700	chr5D	76.278	1193	234	42	377	1544	524577557	524578725	7.720000e-165	590.0
18	TraesCS6B01G100700	chr6A	76.165	1116	237	25	433	1533	15694690	15695791	6.060000e-156	560.0
19	TraesCS6B01G100700	chr6A	76.596	1034	221	15	488	1515	15906795	15905777	1.310000e-152	549.0
20	TraesCS6B01G100700	chr6A	76.298	1059	229	16	470	1522	15700854	15701896	1.700000e-151	545.0
21	TraesCS6B01G100700	chr6A	76.168	1070	225	18	456	1511	17540236	17541289	1.020000e-148	536.0
22	TraesCS6B01G100700	chr6A	74.205	1101	257	26	473	1558	16597799	16598887	3.830000e-118	435.0
23	TraesCS6B01G100700	chr6A	87.640	89	7	2	2419	2507	149957683	149957767	1.590000e-17	100.0
24	TraesCS6B01G100700	chr1A	75.512	1123	246	20	407	1512	589248448	589247338	7.950000e-145	523.0
25	TraesCS6B01G100700	chr2B	74.877	1019	234	18	488	1492	800420788	800419778	6.360000e-121	444.0
26	TraesCS6B01G100700	chr7D	75.179	979	220	20	553	1517	591388025	591388994	8.230000e-120	440.0
27	TraesCS6B01G100700	chr1D	74.946	922	205	15	488	1401	491589624	491588721	1.400000e-107	399.0
28	TraesCS6B01G100700	chr1D	84.314	102	7	4	2409	2507	40901413	40901318	9.550000e-15	91.6
29	TraesCS6B01G100700	chr4D	85.437	103	11	2	2406	2507	26252074	26251975	1.230000e-18	104.0
30	TraesCS6B01G100700	chr3B	88.764	89	5	1	2419	2507	460240858	460240941	1.230000e-18	104.0
31	TraesCS6B01G100700	chr7A	87.640	89	7	1	2419	2507	564611414	564611330	1.590000e-17	100.0
32	TraesCS6B01G100700	chr7A	84.783	92	12	2	2417	2507	543342824	543342914	9.550000e-15	91.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G100700	chr6B	79036273	79038779	2506	False	4630.0	4630	100.000	1	2507	1	chr6B.!!$F4	2506
1	TraesCS6B01G100700	chr6B	15224173	15225594	1421	True	784.0	784	77.019	485	1890	1	chr6B.!!$R1	1405
2	TraesCS6B01G100700	chr6B	14311254	14312408	1154	False	627.0	627	76.772	473	1628	1	chr6B.!!$F1	1155
3	TraesCS6B01G100700	chr6B	52567087	52568177	1090	True	625.0	625	77.355	423	1508	1	chr6B.!!$R2	1085
4	TraesCS6B01G100700	chr6B	16608092	16609169	1077	False	568.0	568	76.642	473	1544	1	chr6B.!!$F2	1071
5	TraesCS6B01G100700	chr6B	26512288	26513365	1077	False	538.0	538	76.000	470	1557	1	chr6B.!!$F3	1087
6	TraesCS6B01G100700	chr6B	62223133	62224188	1055	False	483.5	708	82.926	195	1616	2	chr6B.!!$F7	1421
7	TraesCS6B01G100700	chrUn	27943984	27946448	2464	True	3982.0	3982	95.813	37	2507	1	chrUn.!!$R1	2470
8	TraesCS6B01G100700	chr6D	28623389	28623912	523	True	593.0	593	87.127	211	742	1	chr6D.!!$R3	531
9	TraesCS6B01G100700	chr6D	14726063	14727182	1119	True	580.0	580	76.258	485	1606	1	chr6D.!!$R1	1121
10	TraesCS6B01G100700	chr6D	14442271	14443237	966	False	444.0	444	75.229	635	1606	1	chr6D.!!$F3	971
11	TraesCS6B01G100700	chr6D	15351710	15352480	770	True	374.0	374	75.827	874	1647	1	chr6D.!!$R2	773
12	TraesCS6B01G100700	chr6D	7679993	7680498	505	False	222.0	222	75.706	1383	1890	1	chr6D.!!$F2	507
13	TraesCS6B01G100700	chr5D	524577557	524578725	1168	False	590.0	590	76.278	377	1544	1	chr5D.!!$F1	1167
14	TraesCS6B01G100700	chr6A	15694690	15695791	1101	False	560.0	560	76.165	433	1533	1	chr6A.!!$F1	1100
15	TraesCS6B01G100700	chr6A	15905777	15906795	1018	True	549.0	549	76.596	488	1515	1	chr6A.!!$R1	1027
16	TraesCS6B01G100700	chr6A	15700854	15701896	1042	False	545.0	545	76.298	470	1522	1	chr6A.!!$F2	1052
17	TraesCS6B01G100700	chr6A	17540236	17541289	1053	False	536.0	536	76.168	456	1511	1	chr6A.!!$F4	1055
18	TraesCS6B01G100700	chr6A	16597799	16598887	1088	False	435.0	435	74.205	473	1558	1	chr6A.!!$F3	1085
19	TraesCS6B01G100700	chr1A	589247338	589248448	1110	True	523.0	523	75.512	407	1512	1	chr1A.!!$R1	1105
20	TraesCS6B01G100700	chr2B	800419778	800420788	1010	True	444.0	444	74.877	488	1492	1	chr2B.!!$R1	1004
21	TraesCS6B01G100700	chr7D	591388025	591388994	969	False	440.0	440	75.179	553	1517	1	chr7D.!!$F1	964
22	TraesCS6B01G100700	chr1D	491588721	491589624	903	True	399.0	399	74.946	488	1401	1	chr1D.!!$R2	913

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
30	31	0.043637	ACTCCCCTCCGTCCCATAAA	59.956	55.0	0.0	0.0	0.0	1.4	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1794	1884	1.09805	GTATTTGCAGAGTGCCCTGG	58.902	55.0	0.0	0.0	44.23	4.45	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	3.301274	AGAGAAATCTTACTCCCCTCCG	58.699	50.000	0.00	0.00	34.13	4.63
22	23	3.032459	GAGAAATCTTACTCCCCTCCGT	58.968	50.000	0.00	0.00	0.00	4.69
23	24	3.032459	AGAAATCTTACTCCCCTCCGTC	58.968	50.000	0.00	0.00	0.00	4.79
24	25	1.790818	AATCTTACTCCCCTCCGTCC	58.209	55.000	0.00	0.00	0.00	4.79
25	26	0.105607	ATCTTACTCCCCTCCGTCCC	60.106	60.000	0.00	0.00	0.00	4.46
26	27	1.001248	CTTACTCCCCTCCGTCCCA	59.999	63.158	0.00	0.00	0.00	4.37
27	28	0.398664	CTTACTCCCCTCCGTCCCAT	60.399	60.000	0.00	0.00	0.00	4.00
28	29	0.935942	TTACTCCCCTCCGTCCCATA	59.064	55.000	0.00	0.00	0.00	2.74
29	30	0.935942	TACTCCCCTCCGTCCCATAA	59.064	55.000	0.00	0.00	0.00	1.90
30	31	0.043637	ACTCCCCTCCGTCCCATAAA	59.956	55.000	0.00	0.00	0.00	1.40
31	32	1.345112	ACTCCCCTCCGTCCCATAAAT	60.345	52.381	0.00	0.00	0.00	1.40
32	33	2.090380	ACTCCCCTCCGTCCCATAAATA	60.090	50.000	0.00	0.00	0.00	1.40
33	34	3.182152	CTCCCCTCCGTCCCATAAATAT	58.818	50.000	0.00	0.00	0.00	1.28
34	35	4.202858	ACTCCCCTCCGTCCCATAAATATA	60.203	45.833	0.00	0.00	0.00	0.86
35	36	4.967871	TCCCCTCCGTCCCATAAATATAT	58.032	43.478	0.00	0.00	0.00	0.86
36	37	6.107694	TCCCCTCCGTCCCATAAATATATA	57.892	41.667	0.00	0.00	0.00	0.86
37	38	6.699688	TCCCCTCCGTCCCATAAATATATAT	58.300	40.000	0.00	0.00	0.00	0.86
38	39	7.143741	TCCCCTCCGTCCCATAAATATATATT	58.856	38.462	1.91	1.91	0.00	1.28
39	40	8.298387	TCCCCTCCGTCCCATAAATATATATTA	58.702	37.037	8.39	0.00	0.00	0.98
40	41	9.112658	CCCCTCCGTCCCATAAATATATATTAT	57.887	37.037	8.39	2.72	0.00	1.28
41	42	9.944376	CCCTCCGTCCCATAAATATATATTATG	57.056	37.037	8.39	11.31	39.41	1.90
70	71	5.049405	CGGAGGGAGTACATTTTATGATTGC	60.049	44.000	0.00	0.00	0.00	3.56
75	76	8.592809	AGGGAGTACATTTTATGATTGCAAAAA	58.407	29.630	1.71	0.00	0.00	1.94
76	77	9.382275	GGGAGTACATTTTATGATTGCAAAAAT	57.618	29.630	1.71	1.33	34.09	1.82
112	113	9.834628	GAACGAAAATGTGATCTAAATTTGGTA	57.165	29.630	0.00	0.00	0.00	3.25
181	182	2.025155	TGGCTCTAGTCTGGTCGATTC	58.975	52.381	0.00	0.00	0.00	2.52
182	183	2.303175	GGCTCTAGTCTGGTCGATTCT	58.697	52.381	0.00	0.00	0.00	2.40
183	184	2.292292	GGCTCTAGTCTGGTCGATTCTC	59.708	54.545	0.00	0.00	0.00	2.87
184	185	2.032377	GCTCTAGTCTGGTCGATTCTCG	60.032	54.545	0.00	0.00	42.10	4.04
217	218	2.677979	CGAGAGGTGACTGACGCGA	61.678	63.158	15.93	0.00	44.43	5.87
242	243	0.588252	CACCTTGTTGCTCGGTTGAG	59.412	55.000	0.00	0.00	45.49	3.02
304	316	1.077334	TCTCCCTTCCTTTCCTCTCGT	59.923	52.381	0.00	0.00	0.00	4.18
306	318	1.203137	TCCCTTCCTTTCCTCTCGTCA	60.203	52.381	0.00	0.00	0.00	4.35
421	435	4.363990	CGCCTCGCACTCCACAGT	62.364	66.667	0.00	0.00	0.00	3.55
426	440	2.087462	CTCGCACTCCACAGTCCACA	62.087	60.000	0.00	0.00	0.00	4.17
702	749	2.298661	CCCCAACGTCCTAGGGCTT	61.299	63.158	12.53	0.00	41.42	4.35
823	879	1.282447	AGTCTCTCTTCGGCTCCTACA	59.718	52.381	0.00	0.00	0.00	2.74
1100	1162	1.137872	GAGTCAGGAGATGATTGCCGT	59.862	52.381	0.00	0.00	40.92	5.68
1101	1163	1.134580	AGTCAGGAGATGATTGCCGTG	60.135	52.381	0.00	0.00	40.92	4.94
1162	1224	2.875672	GCTGAGGTGTCCATTGCTGTTA	60.876	50.000	0.00	0.00	0.00	2.41
1205	1267	3.246226	GTGAGGTCTAATAACATGCTGCG	59.754	47.826	0.00	0.00	0.00	5.18
1286	1348	3.686016	GACCAGTAATTCTTGGGCTCAA	58.314	45.455	0.00	0.00	0.00	3.02
1377	1439	2.351455	GACAGGAGCTACTTTTCTGCC	58.649	52.381	0.00	0.00	0.00	4.85
1606	1678	3.811497	TCTGTCTCAGTGTTCTTTGCATG	59.189	43.478	0.00	0.00	32.61	4.06
1728	1804	5.366477	TGCCCATTACATCATTCAGTAGAGA	59.634	40.000	0.00	0.00	0.00	3.10
1776	1852	4.097551	TGTCCATTCTCATGTCAAACCA	57.902	40.909	0.00	0.00	0.00	3.67
1976	2071	2.525629	TGGACAGTGGCGAAGGGA	60.526	61.111	0.00	0.00	0.00	4.20
2080	2175	3.570212	AGCCAAGGGTTGCCGTCT	61.570	61.111	0.00	0.00	0.00	4.18
2089	2184	1.227853	GTTGCCGTCTCCTTGGTGT	60.228	57.895	0.00	0.00	0.00	4.16
2132	2227	1.451028	CAGCAGGCAGGTAAGAGGC	60.451	63.158	0.00	0.00	0.00	4.70
2154	2249	4.825422	CAAGCTCTAGTCTTTGTGATGGA	58.175	43.478	0.00	0.00	0.00	3.41
2207	2302	6.431198	TTGTTCTGTTCAAGTCCTGTTTAC	57.569	37.500	0.00	0.00	0.00	2.01
2208	2303	5.741011	TGTTCTGTTCAAGTCCTGTTTACT	58.259	37.500	0.00	0.00	0.00	2.24
2219	2314	6.937436	AGTCCTGTTTACTTGGTTGTTAAG	57.063	37.500	0.00	0.00	0.00	1.85
2227	2322	8.732531	TGTTTACTTGGTTGTTAAGCCATATAC	58.267	33.333	0.00	0.00	34.37	1.47
2251	2346	7.483307	ACCACTTAAATATGCAAACATGCTAG	58.517	34.615	0.00	0.00	37.04	3.42
2307	2405	4.026062	TCGTCAATTACTACATCGCATTGC	60.026	41.667	0.00	0.00	0.00	3.56
2428	2526	3.844211	AGTGCTGTTATTTACTCCCTCCA	59.156	43.478	0.00	0.00	0.00	3.86
2441	2539	8.998957	TTTACTCCCTCCATCCCATAATATAA	57.001	34.615	0.00	0.00	0.00	0.98
2442	2540	8.624019	TTACTCCCTCCATCCCATAATATAAG	57.376	38.462	0.00	0.00	0.00	1.73
2450	2548	9.224267	CTCCATCCCATAATATAAGAGTGTTTG	57.776	37.037	0.00	0.00	0.00	2.93
2452	2550	7.094205	CCATCCCATAATATAAGAGTGTTTGGC	60.094	40.741	0.00	0.00	0.00	4.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	3.032459	ACGGAGGGGAGTAAGATTTCTC	58.968	50.000	0.00	0.00	0.00	2.87
2	3	3.032459	GACGGAGGGGAGTAAGATTTCT	58.968	50.000	0.00	0.00	0.00	2.52
3	4	2.102757	GGACGGAGGGGAGTAAGATTTC	59.897	54.545	0.00	0.00	0.00	2.17
4	5	2.117051	GGACGGAGGGGAGTAAGATTT	58.883	52.381	0.00	0.00	0.00	2.17
5	6	1.691801	GGGACGGAGGGGAGTAAGATT	60.692	57.143	0.00	0.00	0.00	2.40
7	8	1.309006	GGGACGGAGGGGAGTAAGA	59.691	63.158	0.00	0.00	0.00	2.10
8	9	0.398664	ATGGGACGGAGGGGAGTAAG	60.399	60.000	0.00	0.00	0.00	2.34
9	10	0.935942	TATGGGACGGAGGGGAGTAA	59.064	55.000	0.00	0.00	0.00	2.24
10	11	0.935942	TTATGGGACGGAGGGGAGTA	59.064	55.000	0.00	0.00	0.00	2.59
11	12	0.043637	TTTATGGGACGGAGGGGAGT	59.956	55.000	0.00	0.00	0.00	3.85
12	13	1.435256	ATTTATGGGACGGAGGGGAG	58.565	55.000	0.00	0.00	0.00	4.30
13	14	2.799282	TATTTATGGGACGGAGGGGA	57.201	50.000	0.00	0.00	0.00	4.81
14	15	7.388638	AATATATATTTATGGGACGGAGGGG	57.611	40.000	1.91	0.00	0.00	4.79
15	16	9.944376	CATAATATATATTTATGGGACGGAGGG	57.056	37.037	13.09	0.00	0.00	4.30
16	17	9.944376	CCATAATATATATTTATGGGACGGAGG	57.056	37.037	23.03	5.02	35.31	4.30
28	29	9.105844	CTCCCTCCGATCCCATAATATATATTT	57.894	37.037	13.09	0.00	0.00	1.40
29	30	8.242325	ACTCCCTCCGATCCCATAATATATATT	58.758	37.037	12.51	12.51	0.00	1.28
30	31	7.780822	ACTCCCTCCGATCCCATAATATATAT	58.219	38.462	0.00	0.00	0.00	0.86
31	32	7.175635	ACTCCCTCCGATCCCATAATATATA	57.824	40.000	0.00	0.00	0.00	0.86
32	33	6.044411	ACTCCCTCCGATCCCATAATATAT	57.956	41.667	0.00	0.00	0.00	0.86
33	34	5.483174	ACTCCCTCCGATCCCATAATATA	57.517	43.478	0.00	0.00	0.00	0.86
34	35	4.354208	ACTCCCTCCGATCCCATAATAT	57.646	45.455	0.00	0.00	0.00	1.28
35	36	3.847042	ACTCCCTCCGATCCCATAATA	57.153	47.619	0.00	0.00	0.00	0.98
36	37	2.723530	ACTCCCTCCGATCCCATAAT	57.276	50.000	0.00	0.00	0.00	1.28
37	38	2.178325	TGTACTCCCTCCGATCCCATAA	59.822	50.000	0.00	0.00	0.00	1.90
38	39	1.784593	TGTACTCCCTCCGATCCCATA	59.215	52.381	0.00	0.00	0.00	2.74
39	40	0.561184	TGTACTCCCTCCGATCCCAT	59.439	55.000	0.00	0.00	0.00	4.00
40	41	0.561184	ATGTACTCCCTCCGATCCCA	59.439	55.000	0.00	0.00	0.00	4.37
41	42	1.718280	AATGTACTCCCTCCGATCCC	58.282	55.000	0.00	0.00	0.00	3.85
42	43	3.840124	AAAATGTACTCCCTCCGATCC	57.160	47.619	0.00	0.00	0.00	3.36
43	44	6.097915	TCATAAAATGTACTCCCTCCGATC	57.902	41.667	0.00	0.00	0.00	3.69
44	45	6.688073	ATCATAAAATGTACTCCCTCCGAT	57.312	37.500	0.00	0.00	0.00	4.18
45	46	6.288294	CAATCATAAAATGTACTCCCTCCGA	58.712	40.000	0.00	0.00	0.00	4.55
98	99	5.532779	CCTCTTGCCCTACCAAATTTAGATC	59.467	44.000	0.00	0.00	0.00	2.75
112	113	1.158007	TTCCTTTTCCCTCTTGCCCT	58.842	50.000	0.00	0.00	0.00	5.19
181	182	0.866061	CGTCGTGGCCTACAATCGAG	60.866	60.000	3.32	0.00	29.65	4.04
182	183	1.138036	CGTCGTGGCCTACAATCGA	59.862	57.895	3.32	2.02	0.00	3.59
183	184	0.866061	CTCGTCGTGGCCTACAATCG	60.866	60.000	3.32	5.98	0.00	3.34
184	185	0.454600	TCTCGTCGTGGCCTACAATC	59.545	55.000	3.32	0.00	0.00	2.67
185	186	0.456221	CTCTCGTCGTGGCCTACAAT	59.544	55.000	3.32	0.00	0.00	2.71
186	187	1.592400	CCTCTCGTCGTGGCCTACAA	61.592	60.000	3.32	0.00	0.00	2.41
187	188	2.044555	CCTCTCGTCGTGGCCTACA	61.045	63.158	3.32	0.00	0.00	2.74
1100	1162	6.826231	TGTGTTCTTGAGGTAATTCACTTTCA	59.174	34.615	0.00	0.00	0.00	2.69
1101	1163	7.259290	TGTGTTCTTGAGGTAATTCACTTTC	57.741	36.000	0.00	0.00	0.00	2.62
1205	1267	5.679601	AGATAAGGAACTCTGATTTGCTCC	58.320	41.667	2.45	0.00	38.49	4.70
1377	1439	1.276421	ACCTTCTCGGTCACCATGAAG	59.724	52.381	15.43	15.43	44.93	3.02
1567	1635	3.753272	GACAGAAATTGCCAGCTCACTAA	59.247	43.478	0.00	0.00	0.00	2.24
1579	1651	5.684626	GCAAAGAACACTGAGACAGAAATTG	59.315	40.000	5.76	0.00	35.18	2.32
1606	1678	8.798402	ACTATAGCAGATAACTAACATCCAGAC	58.202	37.037	0.00	0.00	0.00	3.51
1728	1804	8.984891	TTTCATTACAATGCGATGATTTCTTT	57.015	26.923	0.00	0.00	36.36	2.52
1776	1852	1.301423	GGTCTCGCACTCTCGTAGAT	58.699	55.000	0.00	0.00	33.89	1.98
1789	1879	2.575993	CAGAGTGCCCTGGTCTCG	59.424	66.667	0.00	0.00	33.96	4.04
1794	1884	1.098050	GTATTTGCAGAGTGCCCTGG	58.902	55.000	0.00	0.00	44.23	4.45
1986	2081	3.465403	CTCCACCCTGCCCTCTCG	61.465	72.222	0.00	0.00	0.00	4.04
2080	2175	2.297895	CCCCATCGGACACCAAGGA	61.298	63.158	0.00	0.00	0.00	3.36
2089	2184	2.833582	GTCGAGCTCCCCATCGGA	60.834	66.667	8.47	0.00	39.38	4.55
2132	2227	4.825422	TCCATCACAAAGACTAGAGCTTG	58.175	43.478	0.00	0.00	0.00	4.01
2173	2268	1.528309	CAGAACAAAGTGCCCCCGT	60.528	57.895	0.00	0.00	0.00	5.28
2207	2302	5.885912	AGTGGTATATGGCTTAACAACCAAG	59.114	40.000	11.62	0.00	39.96	3.61
2208	2303	5.822204	AGTGGTATATGGCTTAACAACCAA	58.178	37.500	11.62	0.00	39.96	3.67
2219	2314	8.356657	TGTTTGCATATTTAAGTGGTATATGGC	58.643	33.333	0.00	0.00	34.39	4.40
2307	2405	7.691158	AGTTTTCCACTTTCTAAACTAACACG	58.309	34.615	0.00	0.00	38.62	4.49
2428	2526	6.948309	GGCCAAACACTCTTATATTATGGGAT	59.052	38.462	0.00	0.00	0.00	3.85
2480	2578	6.210984	ACTCCTTCCGTCCCATAATATAAGAC	59.789	42.308	0.00	0.00	0.00	3.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.