Multiple sequence alignment - TraesCS6B01G100500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G100500 chr6B 100.000 5025 0 0 1 5025 78590071 78595095 0.000000e+00 9280.0
1 TraesCS6B01G100500 chr6B 94.414 2775 127 19 804 3565 79642320 79639561 0.000000e+00 4241.0
2 TraesCS6B01G100500 chr6B 94.860 2724 113 21 855 3565 79555940 79553231 0.000000e+00 4229.0
3 TraesCS6B01G100500 chr6B 94.675 2723 118 21 855 3565 79438447 79435740 0.000000e+00 4200.0
4 TraesCS6B01G100500 chr6B 93.934 544 29 3 4352 4893 79552053 79551512 0.000000e+00 819.0
5 TraesCS6B01G100500 chr6B 93.934 544 29 3 4352 4893 79638382 79637841 0.000000e+00 819.0
6 TraesCS6B01G100500 chr6B 90.476 546 39 4 4352 4893 79434562 79434026 0.000000e+00 708.0
7 TraesCS6B01G100500 chr6B 95.139 432 21 0 3921 4352 79552794 79552363 0.000000e+00 682.0
8 TraesCS6B01G100500 chr6B 95.139 432 21 0 3921 4352 79639123 79638692 0.000000e+00 682.0
9 TraesCS6B01G100500 chr6B 94.676 432 23 0 3921 4352 79435303 79434872 0.000000e+00 671.0
10 TraesCS6B01G100500 chr6B 96.535 202 7 0 607 808 676881236 676881035 8.060000e-88 335.0
11 TraesCS6B01G100500 chr6B 96.040 202 7 1 601 802 124654423 124654623 1.350000e-85 327.0
12 TraesCS6B01G100500 chr6B 92.523 214 10 6 597 807 696118199 696118409 8.180000e-78 302.0
13 TraesCS6B01G100500 chr6B 76.869 428 85 7 4610 5025 186621256 186620831 3.910000e-56 230.0
14 TraesCS6B01G100500 chr6B 93.548 155 6 3 3728 3878 79435586 79435432 1.410000e-55 228.0
15 TraesCS6B01G100500 chr6B 93.548 155 6 3 3728 3878 79553077 79552923 1.410000e-55 228.0
16 TraesCS6B01G100500 chr6B 92.903 155 7 2 3728 3878 79639406 79639252 6.550000e-54 222.0
17 TraesCS6B01G100500 chr6B 88.158 152 17 1 3728 3879 60105116 60104966 4.000000e-41 180.0
18 TraesCS6B01G100500 chr6B 93.388 121 8 0 3561 3681 79639519 79639399 4.000000e-41 180.0
19 TraesCS6B01G100500 chr6B 93.388 121 7 1 3561 3681 79435698 79435579 1.440000e-40 178.0
20 TraesCS6B01G100500 chr6B 92.562 121 8 1 3561 3681 79553189 79553070 6.690000e-39 172.0
21 TraesCS6B01G100500 chr6B 84.404 109 14 3 824 929 60113735 60113627 2.470000e-18 104.0
22 TraesCS6B01G100500 chr6B 100.000 47 0 0 3682 3728 39715069 39715023 2.490000e-13 87.9
23 TraesCS6B01G100500 chr6B 86.667 75 7 3 4448 4521 63751848 63751776 4.170000e-11 80.5
24 TraesCS6B01G100500 chr6B 97.436 39 1 0 3878 3916 79435369 79435331 3.250000e-07 67.6
25 TraesCS6B01G100500 chr6B 97.436 39 1 0 3878 3916 79552860 79552822 3.250000e-07 67.6
26 TraesCS6B01G100500 chr6B 97.436 39 1 0 3878 3916 79639189 79639151 3.250000e-07 67.6
27 TraesCS6B01G100500 chr6A 93.823 2655 119 21 921 3565 46296499 46293880 0.000000e+00 3952.0
28 TraesCS6B01G100500 chr6A 95.024 1246 55 3 1039 2277 45667533 45668778 0.000000e+00 1951.0
29 TraesCS6B01G100500 chr6A 85.760 1257 145 22 826 2066 33224600 33223362 0.000000e+00 1299.0
30 TraesCS6B01G100500 chr6A 95.323 620 20 6 2954 3565 45669562 45670180 0.000000e+00 976.0
31 TraesCS6B01G100500 chr6A 93.175 630 31 8 2333 2958 45668782 45669403 0.000000e+00 915.0
32 TraesCS6B01G100500 chr6A 93.684 475 18 1 3878 4352 46293541 46293079 0.000000e+00 701.0
33 TraesCS6B01G100500 chr6A 87.296 551 48 9 3922 4470 45670617 45671147 1.200000e-170 610.0
34 TraesCS6B01G100500 chr6A 88.757 507 38 8 3073 3565 33222087 33221586 2.000000e-168 603.0
35 TraesCS6B01G100500 chr6A 88.222 433 27 2 4352 4784 46292829 46292421 3.490000e-136 496.0
36 TraesCS6B01G100500 chr6A 91.379 174 9 3 4854 5025 46292189 46292020 3.020000e-57 233.0
37 TraesCS6B01G100500 chr6A 91.558 154 10 2 3728 3879 45670335 45670487 5.100000e-50 209.0
38 TraesCS6B01G100500 chr6A 79.667 300 50 2 241 529 46296918 46296619 6.590000e-49 206.0
39 TraesCS6B01G100500 chr6A 82.533 229 24 6 21 248 45666845 45667058 2.390000e-43 187.0
40 TraesCS6B01G100500 chr6A 91.129 124 6 4 806 926 45667414 45667535 4.030000e-36 163.0
41 TraesCS6B01G100500 chr6A 91.489 94 8 0 3561 3654 46293838 46293745 4.080000e-26 130.0
42 TraesCS6B01G100500 chr6A 79.581 191 27 12 2564 2751 31162033 31162214 5.280000e-25 126.0
43 TraesCS6B01G100500 chr6A 100.000 47 0 0 3682 3728 597024473 597024427 2.490000e-13 87.9
44 TraesCS6B01G100500 chr6A 88.889 63 6 1 2402 2464 47541595 47541534 5.390000e-10 76.8
45 TraesCS6B01G100500 chr6A 92.857 42 3 0 3875 3916 45670547 45670588 1.510000e-05 62.1
46 TraesCS6B01G100500 chrUn 95.464 1477 61 3 807 2277 112304676 112303200 0.000000e+00 2351.0
47 TraesCS6B01G100500 chrUn 94.815 1408 55 10 820 2224 27743405 27744797 0.000000e+00 2180.0
48 TraesCS6B01G100500 chrUn 94.600 1000 39 8 2308 3301 112303199 112302209 0.000000e+00 1533.0
49 TraesCS6B01G100500 chrUn 95.094 693 26 4 2881 3565 27745415 27746107 0.000000e+00 1085.0
50 TraesCS6B01G100500 chrUn 90.767 574 36 8 4353 4913 112294658 112294089 0.000000e+00 750.0
51 TraesCS6B01G100500 chrUn 93.643 409 20 5 3947 4352 27746662 27747067 1.550000e-169 606.0
52 TraesCS6B01G100500 chrUn 95.868 363 15 0 4352 4714 27747382 27747744 5.600000e-164 588.0
53 TraesCS6B01G100500 chrUn 94.164 377 19 3 2144 2517 27744797 27745173 5.640000e-159 571.0
54 TraesCS6B01G100500 chrUn 96.000 275 9 2 3293 3565 112296002 112295728 3.570000e-121 446.0
55 TraesCS6B01G100500 chrUn 95.528 246 6 5 2559 2801 27745171 27745414 6.100000e-104 388.0
56 TraesCS6B01G100500 chrUn 88.997 309 24 1 242 540 112305027 112304719 1.710000e-99 374.0
57 TraesCS6B01G100500 chrUn 94.017 234 10 3 13 245 112305285 112305055 8.000000e-93 351.0
58 TraesCS6B01G100500 chrUn 94.170 223 13 0 3921 4143 112295283 112295061 1.730000e-89 340.0
59 TraesCS6B01G100500 chrUn 81.166 446 59 14 2557 2989 112679725 112680158 8.060000e-88 335.0
60 TraesCS6B01G100500 chrUn 91.803 183 9 2 4837 5017 27748050 27748228 3.000000e-62 250.0
61 TraesCS6B01G100500 chrUn 90.968 155 11 2 3728 3879 27746262 27746416 6.590000e-49 206.0
62 TraesCS6B01G100500 chrUn 88.050 159 8 5 3732 3879 112295570 112295412 1.440000e-40 178.0
63 TraesCS6B01G100500 chrUn 81.416 226 25 7 21 245 27742822 27743031 8.650000e-38 169.0
64 TraesCS6B01G100500 chrUn 91.667 120 10 0 3561 3680 27746149 27746268 3.110000e-37 167.0
65 TraesCS6B01G100500 chrUn 91.736 121 9 1 4174 4293 112295067 112294947 3.110000e-37 167.0
66 TraesCS6B01G100500 chrUn 91.964 112 9 0 3561 3672 112295686 112295575 1.870000e-34 158.0
67 TraesCS6B01G100500 chrUn 95.238 42 2 0 3878 3919 112295349 112295308 3.250000e-07 67.6
68 TraesCS6B01G100500 chr6D 84.591 1603 201 27 823 2405 29194611 29196187 0.000000e+00 1550.0
69 TraesCS6B01G100500 chr6D 88.499 513 42 9 3067 3565 29196848 29197357 5.560000e-169 604.0
70 TraesCS6B01G100500 chr6D 75.524 429 91 6 4610 5025 101498851 101498424 1.100000e-46 198.0
71 TraesCS6B01G100500 chr7A 88.462 442 37 5 4596 5025 556471162 556471601 5.760000e-144 521.0
72 TraesCS6B01G100500 chr7A 84.807 441 53 4 4596 5025 503454687 503454250 9.990000e-117 431.0
73 TraesCS6B01G100500 chr5B 97.475 198 5 0 606 803 84657561 84657364 6.230000e-89 339.0
74 TraesCS6B01G100500 chr5B 96.482 199 7 0 605 803 558456927 558456729 3.750000e-86 329.0
75 TraesCS6B01G100500 chr5B 96.491 57 1 1 3672 3728 536928260 536928315 5.360000e-15 93.5
76 TraesCS6B01G100500 chr5A 96.891 193 6 0 605 797 422876876 422876684 1.740000e-84 324.0
77 TraesCS6B01G100500 chr5A 100.000 50 0 0 3679 3728 355848355 355848306 5.360000e-15 93.5
78 TraesCS6B01G100500 chr3A 96.842 190 5 1 605 794 704965987 704966175 2.920000e-82 316.0
79 TraesCS6B01G100500 chr3A 100.000 50 0 0 3679 3728 702264262 702264311 5.360000e-15 93.5
80 TraesCS6B01G100500 chr3A 98.039 51 0 1 3678 3728 740692110 740692061 2.490000e-13 87.9
81 TraesCS6B01G100500 chr3A 98.039 51 0 1 3678 3728 740723704 740723655 2.490000e-13 87.9
82 TraesCS6B01G100500 chr4A 88.060 268 18 8 4588 4845 472967956 472967693 6.320000e-79 305.0
83 TraesCS6B01G100500 chr3B 94.472 199 9 2 605 803 528652232 528652428 6.320000e-79 305.0
84 TraesCS6B01G100500 chr2B 94.000 200 12 0 604 803 335806311 335806510 2.270000e-78 303.0
85 TraesCS6B01G100500 chr2B 78.261 115 15 7 4790 4899 656581812 656581921 1.170000e-06 65.8
86 TraesCS6B01G100500 chr4D 87.778 270 17 10 4588 4845 102138944 102139209 8.180000e-78 302.0
87 TraesCS6B01G100500 chr7B 96.296 54 2 0 3675 3728 675849985 675850038 6.930000e-14 89.8
88 TraesCS6B01G100500 chr1B 98.039 51 1 0 3678 3728 13232979 13233029 6.930000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G100500 chr6B 78590071 78595095 5024 False 9280.000000 9280 100.000000 1 5025 1 chr6B.!!$F1 5024
1 TraesCS6B01G100500 chr6B 79637841 79642320 4479 True 1035.266667 4241 94.535667 804 4893 6 chr6B.!!$R9 4089
2 TraesCS6B01G100500 chr6B 79551512 79555940 4428 True 1032.933333 4229 94.579833 855 4893 6 chr6B.!!$R8 4038
3 TraesCS6B01G100500 chr6B 79434026 79438447 4421 True 1008.766667 4200 94.033167 855 4893 6 chr6B.!!$R7 4038
4 TraesCS6B01G100500 chr6A 46292020 46296918 4898 True 953.000000 3952 89.710667 241 5025 6 chr6A.!!$R4 4784
5 TraesCS6B01G100500 chr6A 33221586 33224600 3014 True 951.000000 1299 87.258500 826 3565 2 chr6A.!!$R3 2739
6 TraesCS6B01G100500 chr6A 45666845 45671147 4302 False 634.137500 1951 91.111875 21 4470 8 chr6A.!!$F2 4449
7 TraesCS6B01G100500 chrUn 112302209 112305285 3076 True 1152.250000 2351 93.269500 13 3301 4 chrUn.!!$R2 3288
8 TraesCS6B01G100500 chrUn 27742822 27748228 5406 False 621.000000 2180 92.496600 21 5017 10 chrUn.!!$F2 4996
9 TraesCS6B01G100500 chrUn 112294089 112296002 1913 True 300.942857 750 92.560714 3293 4913 7 chrUn.!!$R1 1620
10 TraesCS6B01G100500 chr6D 29194611 29197357 2746 False 1077.000000 1550 86.545000 823 3565 2 chr6D.!!$F1 2742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.326264 CCAGTCCTCCAACCCAAGAG 59.674 60.000 0.00 0.00 0.00 2.85 F
303 361 0.806884 TCACGTCCGGACAACACAAC 60.807 55.000 32.80 5.45 0.00 3.32 F
397 457 1.032114 GTGCATAAGGTGGTCTGCCC 61.032 60.000 0.00 0.00 33.70 5.36 F
398 458 1.302949 GCATAAGGTGGTCTGCCCA 59.697 57.895 0.00 0.00 42.51 5.36 F
2382 2880 1.065854 GTATGTTCTCTGCAGCCAGGT 60.066 52.381 9.47 0.00 39.61 4.00 F
2667 3171 2.629617 CCTGTTGCCTTCCTGTTCAATT 59.370 45.455 0.00 0.00 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1537 1.432514 TCGTTGTCTTCTCTGCATGC 58.567 50.000 11.82 11.82 0.00 4.06 R
1477 1625 1.455587 CCACTGCCAACACCACCTT 60.456 57.895 0.00 0.00 0.00 3.50 R
2382 2880 0.040058 AGACCAATTGCAGGCCATCA 59.960 50.000 5.01 0.00 0.00 3.07 R
2422 2920 6.532657 AGCTCTGACTTGAACAACAAAAATTG 59.467 34.615 0.00 0.00 38.08 2.32 R
3700 4659 0.032130 TCCGGCGCTAAGATGCTTAG 59.968 55.000 7.64 9.30 0.00 2.18 R
4122 5278 0.036875 AGCACAGAGGGCCAAGTTAC 59.963 55.000 6.18 0.00 0.00 2.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 0.326264 CCAGTCCTCCAACCCAAGAG 59.674 60.000 0.00 0.00 0.00 2.85
69 70 0.944386 CCCAAGAGACAACAACCACG 59.056 55.000 0.00 0.00 0.00 4.94
129 144 8.774546 ATTAATCCAGAGATCAAGTACAGAGA 57.225 34.615 0.00 0.00 0.00 3.10
130 145 8.774546 TTAATCCAGAGATCAAGTACAGAGAT 57.225 34.615 0.00 0.00 0.00 2.75
131 146 9.868160 TTAATCCAGAGATCAAGTACAGAGATA 57.132 33.333 0.00 0.00 0.00 1.98
132 147 8.954834 AATCCAGAGATCAAGTACAGAGATAT 57.045 34.615 0.00 0.00 0.00 1.63
133 148 7.994425 TCCAGAGATCAAGTACAGAGATATC 57.006 40.000 0.00 0.00 31.88 1.63
134 149 7.521669 TCCAGAGATCAAGTACAGAGATATCA 58.478 38.462 5.32 0.00 33.63 2.15
135 150 8.001292 TCCAGAGATCAAGTACAGAGATATCAA 58.999 37.037 5.32 3.08 33.63 2.57
136 151 8.298854 CCAGAGATCAAGTACAGAGATATCAAG 58.701 40.741 5.32 9.23 33.63 3.02
137 152 8.849168 CAGAGATCAAGTACAGAGATATCAAGT 58.151 37.037 5.32 2.94 33.63 3.16
142 157 9.647918 ATCAAGTACAGAGATATCAAGTCCTTA 57.352 33.333 5.32 0.00 0.00 2.69
303 361 0.806884 TCACGTCCGGACAACACAAC 60.807 55.000 32.80 5.45 0.00 3.32
314 372 2.476619 GACAACACAACAGGATCGTCAG 59.523 50.000 0.00 0.00 0.00 3.51
349 407 7.912719 AGGCTAGAGAGAAAATTATGGGATAC 58.087 38.462 0.00 0.00 0.00 2.24
382 442 5.577164 GCTAATTAAAGACGAAGAGAGTGCA 59.423 40.000 0.00 0.00 0.00 4.57
397 457 1.032114 GTGCATAAGGTGGTCTGCCC 61.032 60.000 0.00 0.00 33.70 5.36
398 458 1.302949 GCATAAGGTGGTCTGCCCA 59.697 57.895 0.00 0.00 42.51 5.36
459 529 7.592533 CGGATGTGATTTAATTGGATTGATCAC 59.407 37.037 16.56 16.56 41.87 3.06
465 535 9.192642 TGATTTAATTGGATTGATCACATGTCT 57.807 29.630 0.00 0.00 0.00 3.41
553 624 8.902540 AATAGTATGGATATTCACTCGCAAAA 57.097 30.769 0.00 0.00 0.00 2.44
554 625 8.902540 ATAGTATGGATATTCACTCGCAAAAA 57.097 30.769 0.00 0.00 0.00 1.94
607 678 9.796120 GATAGTGTAGATACAAAGATATGGAGC 57.204 37.037 0.00 0.00 38.04 4.70
608 679 7.603180 AGTGTAGATACAAAGATATGGAGCA 57.397 36.000 0.00 0.00 38.04 4.26
609 680 8.200024 AGTGTAGATACAAAGATATGGAGCAT 57.800 34.615 0.00 0.00 38.04 3.79
610 681 9.314133 AGTGTAGATACAAAGATATGGAGCATA 57.686 33.333 0.00 0.00 38.04 3.14
611 682 9.929180 GTGTAGATACAAAGATATGGAGCATAA 57.071 33.333 0.00 0.00 38.04 1.90
615 686 9.458727 AGATACAAAGATATGGAGCATAATTGG 57.541 33.333 0.00 0.00 30.29 3.16
616 687 9.236006 GATACAAAGATATGGAGCATAATTGGT 57.764 33.333 0.00 0.00 35.95 3.67
617 688 7.902920 ACAAAGATATGGAGCATAATTGGTT 57.097 32.000 0.00 0.00 32.62 3.67
618 689 8.310122 ACAAAGATATGGAGCATAATTGGTTT 57.690 30.769 0.00 0.00 32.62 3.27
619 690 8.199449 ACAAAGATATGGAGCATAATTGGTTTG 58.801 33.333 0.00 0.00 32.62 2.93
620 691 8.415553 CAAAGATATGGAGCATAATTGGTTTGA 58.584 33.333 0.00 0.00 32.62 2.69
621 692 8.716674 AAGATATGGAGCATAATTGGTTTGAT 57.283 30.769 0.00 0.00 32.62 2.57
622 693 8.118976 AGATATGGAGCATAATTGGTTTGATG 57.881 34.615 0.00 0.00 32.62 3.07
623 694 4.389890 TGGAGCATAATTGGTTTGATGC 57.610 40.909 1.15 1.15 44.05 3.91
630 701 7.775397 GCATAATTGGTTTGATGCTAACATT 57.225 32.000 2.09 0.00 41.19 2.71
631 702 8.200364 GCATAATTGGTTTGATGCTAACATTT 57.800 30.769 2.09 0.00 41.19 2.32
632 703 8.117988 GCATAATTGGTTTGATGCTAACATTTG 58.882 33.333 2.09 0.00 41.19 2.32
633 704 8.605746 CATAATTGGTTTGATGCTAACATTTGG 58.394 33.333 0.00 0.00 36.35 3.28
634 705 3.924144 TGGTTTGATGCTAACATTTGGC 58.076 40.909 0.00 0.00 36.35 4.52
678 749 7.437793 CCAACAATTGGCAATATCAAAAGTT 57.562 32.000 14.05 7.18 45.17 2.66
679 750 7.299586 CCAACAATTGGCAATATCAAAAGTTG 58.700 34.615 14.05 16.55 45.17 3.16
680 751 6.484818 ACAATTGGCAATATCAAAAGTTGC 57.515 33.333 14.05 0.97 45.54 4.17
688 759 7.832503 GCAATATCAAAAGTTGCCAATAGTT 57.167 32.000 0.00 0.00 41.67 2.24
689 760 7.678226 GCAATATCAAAAGTTGCCAATAGTTG 58.322 34.615 0.00 0.00 41.67 3.16
702 773 5.655893 CCAATAGTTGGCAACTTTTTGTG 57.344 39.130 35.13 24.29 45.17 3.33
703 774 5.355596 CCAATAGTTGGCAACTTTTTGTGA 58.644 37.500 35.13 17.67 45.17 3.58
704 775 5.463061 CCAATAGTTGGCAACTTTTTGTGAG 59.537 40.000 35.13 20.18 45.17 3.51
705 776 3.525268 AGTTGGCAACTTTTTGTGAGG 57.475 42.857 26.54 0.00 39.04 3.86
706 777 2.831526 AGTTGGCAACTTTTTGTGAGGT 59.168 40.909 26.54 0.60 39.04 3.85
707 778 3.260632 AGTTGGCAACTTTTTGTGAGGTT 59.739 39.130 26.54 0.39 39.04 3.50
708 779 3.244033 TGGCAACTTTTTGTGAGGTTG 57.756 42.857 0.00 0.00 41.07 3.77
709 780 2.093764 TGGCAACTTTTTGTGAGGTTGG 60.094 45.455 0.00 0.00 39.28 3.77
710 781 1.933181 GCAACTTTTTGTGAGGTTGGC 59.067 47.619 0.00 0.00 39.28 4.52
711 782 2.676463 GCAACTTTTTGTGAGGTTGGCA 60.676 45.455 0.00 0.00 39.28 4.92
712 783 3.594134 CAACTTTTTGTGAGGTTGGCAA 58.406 40.909 0.00 0.00 36.43 4.52
713 784 3.525268 ACTTTTTGTGAGGTTGGCAAG 57.475 42.857 0.00 0.00 0.00 4.01
714 785 2.831526 ACTTTTTGTGAGGTTGGCAAGT 59.168 40.909 0.00 0.00 0.00 3.16
715 786 4.020543 ACTTTTTGTGAGGTTGGCAAGTA 58.979 39.130 0.00 0.00 0.00 2.24
716 787 4.464597 ACTTTTTGTGAGGTTGGCAAGTAA 59.535 37.500 0.00 0.00 0.00 2.24
717 788 5.046950 ACTTTTTGTGAGGTTGGCAAGTAAA 60.047 36.000 0.00 0.00 0.00 2.01
718 789 4.379339 TTTGTGAGGTTGGCAAGTAAAC 57.621 40.909 0.00 0.00 0.00 2.01
719 790 3.006112 TGTGAGGTTGGCAAGTAAACA 57.994 42.857 0.00 0.64 0.00 2.83
720 791 3.561143 TGTGAGGTTGGCAAGTAAACAT 58.439 40.909 0.00 0.00 0.00 2.71
721 792 3.317711 TGTGAGGTTGGCAAGTAAACATG 59.682 43.478 0.00 0.00 0.00 3.21
722 793 2.890311 TGAGGTTGGCAAGTAAACATGG 59.110 45.455 0.00 0.00 0.00 3.66
723 794 2.890945 GAGGTTGGCAAGTAAACATGGT 59.109 45.455 0.00 0.00 0.00 3.55
724 795 4.076394 GAGGTTGGCAAGTAAACATGGTA 58.924 43.478 0.00 0.00 0.00 3.25
725 796 4.079253 AGGTTGGCAAGTAAACATGGTAG 58.921 43.478 0.00 0.00 0.00 3.18
726 797 3.366985 GGTTGGCAAGTAAACATGGTAGC 60.367 47.826 0.00 0.00 0.00 3.58
727 798 2.442413 TGGCAAGTAAACATGGTAGCC 58.558 47.619 0.00 0.82 41.15 3.93
728 799 2.442413 GGCAAGTAAACATGGTAGCCA 58.558 47.619 0.00 0.00 40.50 4.75
729 800 2.823154 GGCAAGTAAACATGGTAGCCAA 59.177 45.455 0.00 0.00 40.50 4.52
730 801 3.366985 GGCAAGTAAACATGGTAGCCAAC 60.367 47.826 0.00 0.00 40.50 3.77
752 823 2.531522 AGCACTGGACAAAATTTGGC 57.468 45.000 10.71 6.87 38.21 4.52
753 824 1.761784 AGCACTGGACAAAATTTGGCA 59.238 42.857 14.12 0.00 41.76 4.92
754 825 2.369532 AGCACTGGACAAAATTTGGCAT 59.630 40.909 14.12 0.00 41.76 4.40
755 826 3.140623 GCACTGGACAAAATTTGGCATT 58.859 40.909 14.12 0.00 41.76 3.56
756 827 3.565063 GCACTGGACAAAATTTGGCATTT 59.435 39.130 14.12 0.00 41.76 2.32
757 828 4.555116 GCACTGGACAAAATTTGGCATTTG 60.555 41.667 14.12 9.81 41.76 2.32
758 829 3.565063 ACTGGACAAAATTTGGCATTTGC 59.435 39.130 14.12 0.00 41.76 3.68
778 849 3.389925 CCAACTGTTGGCATGTCAATT 57.610 42.857 25.21 3.61 45.17 2.32
779 850 3.731089 CCAACTGTTGGCATGTCAATTT 58.269 40.909 25.21 7.31 45.17 1.82
780 851 4.128643 CCAACTGTTGGCATGTCAATTTT 58.871 39.130 25.21 6.95 45.17 1.82
781 852 4.575645 CCAACTGTTGGCATGTCAATTTTT 59.424 37.500 25.21 6.59 45.17 1.94
782 853 5.503498 CAACTGTTGGCATGTCAATTTTTG 58.497 37.500 17.07 14.51 0.00 2.44
783 854 4.128643 ACTGTTGGCATGTCAATTTTTGG 58.871 39.130 17.07 5.80 0.00 3.28
784 855 2.877168 TGTTGGCATGTCAATTTTTGGC 59.123 40.909 17.07 1.67 35.37 4.52
793 864 4.774124 TGTCAATTTTTGGCATCAAACCA 58.226 34.783 0.00 0.00 40.96 3.67
794 865 5.188434 TGTCAATTTTTGGCATCAAACCAA 58.812 33.333 0.00 0.00 45.37 3.67
795 866 5.826737 TGTCAATTTTTGGCATCAAACCAAT 59.173 32.000 0.00 0.00 46.25 3.16
796 867 6.320672 TGTCAATTTTTGGCATCAAACCAATT 59.679 30.769 0.00 0.00 46.25 2.32
797 868 7.500227 TGTCAATTTTTGGCATCAAACCAATTA 59.500 29.630 0.00 0.00 46.25 1.40
798 869 8.513774 GTCAATTTTTGGCATCAAACCAATTAT 58.486 29.630 0.00 0.00 46.25 1.28
799 870 8.512956 TCAATTTTTGGCATCAAACCAATTATG 58.487 29.630 0.00 0.00 46.25 1.90
800 871 5.876612 TTTTGGCATCAAACCAATTATGC 57.123 34.783 0.00 0.00 46.25 3.14
801 872 4.822685 TTGGCATCAAACCAATTATGCT 57.177 36.364 8.17 0.00 42.23 3.79
802 873 4.389890 TGGCATCAAACCAATTATGCTC 57.610 40.909 8.17 1.21 43.33 4.26
1241 1368 2.186903 CCCGGATTGTGTCTCCCG 59.813 66.667 0.73 0.00 41.47 5.14
1477 1625 1.375908 GACGATGCCCAGCACTTCA 60.376 57.895 0.00 0.00 43.04 3.02
1533 1681 4.214383 CACCATCGAGCGCTTGCG 62.214 66.667 20.39 15.97 45.69 4.85
1663 1811 1.384191 GTGCTGGTTGGGGATTCCT 59.616 57.895 2.01 0.00 36.20 3.36
1770 1918 2.423373 GCATATCCTTGAAGAGGGCCAA 60.423 50.000 6.18 0.00 46.31 4.52
2183 2594 4.516323 TCATGGCATATATGGTTCATCCG 58.484 43.478 14.51 0.00 39.52 4.18
2194 2605 2.158740 TGGTTCATCCGTTCCTGTTGAA 60.159 45.455 0.00 0.00 39.52 2.69
2382 2880 1.065854 GTATGTTCTCTGCAGCCAGGT 60.066 52.381 9.47 0.00 39.61 4.00
2422 2920 7.041372 TGGTCTATTGTTTAGTTTCACTTCTGC 60.041 37.037 0.00 0.00 0.00 4.26
2456 2959 5.221441 TGTTCAAGTCAGAGCTAGCAAACTA 60.221 40.000 18.83 0.00 0.00 2.24
2648 3152 6.436027 TCTCTACTGGATGTGAATACTTCCT 58.564 40.000 11.93 0.00 46.23 3.36
2667 3171 2.629617 CCTGTTGCCTTCCTGTTCAATT 59.370 45.455 0.00 0.00 0.00 2.32
2736 3240 6.494835 AGTTCCTTCTGATAATGCAGGTTTTT 59.505 34.615 0.00 0.00 36.55 1.94
2756 3261 4.816048 TTTCTCCCTCTAGCTCCAGATA 57.184 45.455 0.00 0.00 0.00 1.98
2777 3282 7.337942 CAGATAGCTCAAAACTCATTACCCTTT 59.662 37.037 0.00 0.00 0.00 3.11
2901 3592 7.209471 ACATGCCTTTGATTAGTTTTTCGTA 57.791 32.000 0.00 0.00 0.00 3.43
3174 4069 4.183865 CGGATGATTGTTCTAGTGCAAGA 58.816 43.478 0.00 0.00 0.00 3.02
3575 4534 7.680730 AGGCTTCTACTACATTTCTGAAAAGA 58.319 34.615 11.85 4.44 0.00 2.52
3589 4548 8.627208 TTTCTGAAAAGAATGTCTATGAGCTT 57.373 30.769 0.00 0.00 0.00 3.74
3593 4552 9.985318 CTGAAAAGAATGTCTATGAGCTTTAAG 57.015 33.333 0.00 0.00 0.00 1.85
3595 4554 6.934048 AAGAATGTCTATGAGCTTTAAGCC 57.066 37.500 13.84 5.95 43.77 4.35
3601 4560 5.104776 TGTCTATGAGCTTTAAGCCAGATGT 60.105 40.000 13.84 0.00 43.77 3.06
3604 4563 5.573337 ATGAGCTTTAAGCCAGATGTTTC 57.427 39.130 13.84 2.63 43.77 2.78
3681 4640 8.484641 TCAAATGATTCGATAATCTAGGATGC 57.515 34.615 0.00 0.00 41.83 3.91
3682 4641 8.096414 TCAAATGATTCGATAATCTAGGATGCA 58.904 33.333 0.00 0.00 41.83 3.96
3683 4642 8.724229 CAAATGATTCGATAATCTAGGATGCAA 58.276 33.333 0.00 0.00 41.83 4.08
3687 4646 7.933577 TGATTCGATAATCTAGGATGCAAAGTT 59.066 33.333 0.00 0.00 41.83 2.66
3688 4647 8.682936 ATTCGATAATCTAGGATGCAAAGTTT 57.317 30.769 0.00 0.00 0.00 2.66
3689 4648 8.506168 TTCGATAATCTAGGATGCAAAGTTTT 57.494 30.769 0.00 0.00 0.00 2.43
3690 4649 9.607988 TTCGATAATCTAGGATGCAAAGTTTTA 57.392 29.630 0.00 0.00 0.00 1.52
3691 4650 9.607988 TCGATAATCTAGGATGCAAAGTTTTAA 57.392 29.630 0.00 0.00 0.00 1.52
3697 4656 7.693952 TCTAGGATGCAAAGTTTTAAATAGCG 58.306 34.615 0.00 0.00 0.00 4.26
3698 4657 5.102313 AGGATGCAAAGTTTTAAATAGCGC 58.898 37.500 0.00 0.00 0.00 5.92
3699 4658 4.027702 GGATGCAAAGTTTTAAATAGCGCG 60.028 41.667 0.00 0.00 0.00 6.86
3700 4659 2.659279 TGCAAAGTTTTAAATAGCGCGC 59.341 40.909 26.66 26.66 0.00 6.86
3701 4660 2.914838 GCAAAGTTTTAAATAGCGCGCT 59.085 40.909 38.01 38.01 0.00 5.92
3702 4661 4.092816 GCAAAGTTTTAAATAGCGCGCTA 58.907 39.130 39.72 39.72 0.00 4.26
3703 4662 4.555747 GCAAAGTTTTAAATAGCGCGCTAA 59.444 37.500 40.90 26.03 31.73 3.09
3704 4663 5.275280 GCAAAGTTTTAAATAGCGCGCTAAG 60.275 40.000 40.90 16.80 31.73 2.18
3705 4664 3.936661 AGTTTTAAATAGCGCGCTAAGC 58.063 40.909 40.90 27.92 43.95 3.09
3717 4676 1.856012 GCTAAGCATCTTAGCGCCG 59.144 57.895 18.95 0.00 38.12 6.46
3718 4677 1.560860 GCTAAGCATCTTAGCGCCGG 61.561 60.000 18.95 0.00 38.12 6.13
3719 4678 0.032130 CTAAGCATCTTAGCGCCGGA 59.968 55.000 5.05 0.00 40.15 5.14
3720 4679 0.249322 TAAGCATCTTAGCGCCGGAC 60.249 55.000 5.05 0.00 40.15 4.79
3721 4680 2.925162 AAGCATCTTAGCGCCGGACC 62.925 60.000 5.05 0.00 40.15 4.46
3722 4681 2.815308 CATCTTAGCGCCGGACCT 59.185 61.111 5.05 1.80 0.00 3.85
3723 4682 1.300233 CATCTTAGCGCCGGACCTC 60.300 63.158 5.05 0.00 0.00 3.85
3724 4683 1.455959 ATCTTAGCGCCGGACCTCT 60.456 57.895 5.05 0.00 0.00 3.69
3725 4684 1.043673 ATCTTAGCGCCGGACCTCTT 61.044 55.000 5.05 0.00 0.00 2.85
3726 4685 1.218316 CTTAGCGCCGGACCTCTTT 59.782 57.895 5.05 0.00 0.00 2.52
3727 4686 0.806492 CTTAGCGCCGGACCTCTTTC 60.806 60.000 5.05 0.00 0.00 2.62
3728 4687 1.255667 TTAGCGCCGGACCTCTTTCT 61.256 55.000 5.05 0.00 0.00 2.52
3729 4688 0.394762 TAGCGCCGGACCTCTTTCTA 60.395 55.000 5.05 0.00 0.00 2.10
3730 4689 1.227002 GCGCCGGACCTCTTTCTAG 60.227 63.158 5.05 0.00 0.00 2.43
3731 4690 1.437986 CGCCGGACCTCTTTCTAGG 59.562 63.158 5.05 0.00 42.82 3.02
3732 4691 1.035932 CGCCGGACCTCTTTCTAGGA 61.036 60.000 5.05 0.00 39.15 2.94
3733 4692 1.415200 GCCGGACCTCTTTCTAGGAT 58.585 55.000 5.05 0.00 39.15 3.24
3734 4693 1.069358 GCCGGACCTCTTTCTAGGATG 59.931 57.143 5.05 0.00 39.15 3.51
3735 4694 2.389715 CCGGACCTCTTTCTAGGATGT 58.610 52.381 0.00 0.00 39.15 3.06
3736 4695 2.766828 CCGGACCTCTTTCTAGGATGTT 59.233 50.000 0.00 0.00 39.15 2.71
3737 4696 3.181474 CCGGACCTCTTTCTAGGATGTTC 60.181 52.174 0.00 0.00 39.15 3.18
3738 4697 3.447586 CGGACCTCTTTCTAGGATGTTCA 59.552 47.826 0.00 0.00 39.15 3.18
3739 4698 4.440802 CGGACCTCTTTCTAGGATGTTCAG 60.441 50.000 0.00 0.00 39.15 3.02
3740 4699 4.468153 GGACCTCTTTCTAGGATGTTCAGT 59.532 45.833 0.00 0.00 39.15 3.41
3741 4700 5.657302 GGACCTCTTTCTAGGATGTTCAGTA 59.343 44.000 0.00 0.00 39.15 2.74
3742 4701 6.325286 GGACCTCTTTCTAGGATGTTCAGTAT 59.675 42.308 0.00 0.00 39.15 2.12
3855 4827 8.682936 ATATGCTAACAATAAGAGTTGAAGGG 57.317 34.615 0.00 0.00 33.37 3.95
4122 5278 3.554337 GGGTCTGTTATGTGCTATACCCG 60.554 52.174 0.00 0.00 36.27 5.28
4126 5282 5.689068 GTCTGTTATGTGCTATACCCGTAAC 59.311 44.000 0.00 0.00 0.00 2.50
4191 5347 5.854010 TCTATGTTCTGTATGAGGACACC 57.146 43.478 0.00 0.00 43.48 4.16
4265 5422 0.678950 TGGTGCCTTTTAAGCAAGCC 59.321 50.000 0.00 0.00 43.02 4.35
4295 5452 0.396811 AGCCCACCTGTCAGTTGTAC 59.603 55.000 0.00 0.00 0.00 2.90
4408 5883 8.755696 TGACAATGTAAAAGGAAAATGTATGC 57.244 30.769 0.00 0.00 0.00 3.14
4428 5903 1.304962 TGAGGCGCTCTGTTAGGGA 60.305 57.895 7.64 0.00 40.56 4.20
4450 5925 0.827507 GGCAACCAGATTGTGTGGGT 60.828 55.000 0.00 0.00 40.77 4.51
4528 6003 3.009723 CAGTTTAATGGAGTGCATCGGT 58.990 45.455 0.00 0.00 0.00 4.69
4569 6047 1.375551 AAAGCGAACGGACAAACACT 58.624 45.000 0.00 0.00 0.00 3.55
4580 6058 0.820891 ACAAACACTGGCAGCTCCTG 60.821 55.000 15.89 7.91 39.46 3.86
4741 6219 7.254795 GCTAGAAGAGCCAAATTAAAATAGCGA 60.255 37.037 0.00 0.00 46.41 4.93
4792 6272 1.674359 TCGGCGCACATAATTTCCAT 58.326 45.000 10.83 0.00 0.00 3.41
4830 6311 1.133915 GTTGTCACTCTCCCCCAACAA 60.134 52.381 0.00 0.00 36.35 2.83
4832 6313 1.780309 TGTCACTCTCCCCCAACAATT 59.220 47.619 0.00 0.00 0.00 2.32
4916 6579 5.247862 TGCATATGATGGTATAACCTGCAG 58.752 41.667 6.78 6.78 37.14 4.41
4919 6582 3.931907 TGATGGTATAACCTGCAGCTT 57.068 42.857 8.66 3.38 39.58 3.74
4939 6602 7.303998 CAGCTTACTTGAGAAGGATTTCTTTG 58.696 38.462 0.00 0.00 43.63 2.77
4973 6636 2.978156 TTGCCTCTCTTTCCAACCAT 57.022 45.000 0.00 0.00 0.00 3.55
4975 6638 2.795329 TGCCTCTCTTTCCAACCATTC 58.205 47.619 0.00 0.00 0.00 2.67
4976 6639 2.108075 TGCCTCTCTTTCCAACCATTCA 59.892 45.455 0.00 0.00 0.00 2.57
4977 6640 2.489722 GCCTCTCTTTCCAACCATTCAC 59.510 50.000 0.00 0.00 0.00 3.18
4978 6641 3.084786 CCTCTCTTTCCAACCATTCACC 58.915 50.000 0.00 0.00 0.00 4.02
4989 6652 1.567649 ACCATTCACCCTCTGCATGAT 59.432 47.619 0.00 0.00 0.00 2.45
5000 6663 3.931468 CCTCTGCATGATACGATCAATCC 59.069 47.826 0.00 0.00 43.50 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.133253 CTCCATGTTTCGTGCGCAG 59.867 57.895 12.22 5.26 0.00 5.18
11 12 2.324330 CCTCCATGTTTCGTGCGCA 61.324 57.895 5.66 5.66 0.00 6.09
12 13 1.970917 CTCCTCCATGTTTCGTGCGC 61.971 60.000 0.00 0.00 0.00 6.09
13 14 0.670546 ACTCCTCCATGTTTCGTGCG 60.671 55.000 0.00 0.00 0.00 5.34
14 15 1.197721 CAACTCCTCCATGTTTCGTGC 59.802 52.381 0.00 0.00 0.00 5.34
15 16 1.197721 GCAACTCCTCCATGTTTCGTG 59.802 52.381 0.00 0.00 0.00 4.35
16 17 1.072331 AGCAACTCCTCCATGTTTCGT 59.928 47.619 0.00 0.00 0.00 3.85
17 18 1.734465 GAGCAACTCCTCCATGTTTCG 59.266 52.381 0.00 0.00 0.00 3.46
40 41 1.353091 GTCTCTTGGGTTGGAGGACT 58.647 55.000 0.00 0.00 0.00 3.85
57 58 1.000884 TTGTCGTCGTGGTTGTTGTC 58.999 50.000 0.00 0.00 0.00 3.18
69 70 2.248431 GCAGGCGTTGTTGTCGTC 59.752 61.111 0.00 0.00 0.00 4.20
123 138 8.356657 CGAAGATTAAGGACTTGATATCTCTGT 58.643 37.037 3.98 0.19 0.00 3.41
124 139 8.356657 ACGAAGATTAAGGACTTGATATCTCTG 58.643 37.037 3.98 0.00 0.00 3.35
125 140 8.356657 CACGAAGATTAAGGACTTGATATCTCT 58.643 37.037 3.98 0.00 0.00 3.10
126 141 8.353684 TCACGAAGATTAAGGACTTGATATCTC 58.646 37.037 3.98 0.00 0.00 2.75
127 142 8.239038 TCACGAAGATTAAGGACTTGATATCT 57.761 34.615 3.98 0.00 0.00 1.98
128 143 9.482627 AATCACGAAGATTAAGGACTTGATATC 57.517 33.333 6.16 0.00 45.00 1.63
129 144 9.265901 CAATCACGAAGATTAAGGACTTGATAT 57.734 33.333 7.36 0.00 45.06 1.63
130 145 8.258007 ACAATCACGAAGATTAAGGACTTGATA 58.742 33.333 7.36 0.00 45.06 2.15
131 146 7.065085 CACAATCACGAAGATTAAGGACTTGAT 59.935 37.037 7.36 0.00 45.06 2.57
132 147 6.368791 CACAATCACGAAGATTAAGGACTTGA 59.631 38.462 7.36 0.00 45.06 3.02
133 148 6.368791 TCACAATCACGAAGATTAAGGACTTG 59.631 38.462 7.36 0.00 45.06 3.16
134 149 6.464222 TCACAATCACGAAGATTAAGGACTT 58.536 36.000 7.36 0.00 45.06 3.01
135 150 6.037786 TCACAATCACGAAGATTAAGGACT 57.962 37.500 7.36 0.00 45.06 3.85
136 151 6.721571 TTCACAATCACGAAGATTAAGGAC 57.278 37.500 7.36 0.00 45.06 3.85
137 152 6.934645 ACTTTCACAATCACGAAGATTAAGGA 59.065 34.615 7.36 4.17 45.06 3.36
142 157 7.173907 AGAATCACTTTCACAATCACGAAGATT 59.826 33.333 0.00 0.00 41.02 2.40
230 245 2.118403 TTGTTGTCCTCTCCTTCCCT 57.882 50.000 0.00 0.00 0.00 4.20
266 324 0.741221 GAGTGTGGATTCTGGCCGTC 60.741 60.000 0.00 0.00 0.00 4.79
303 361 0.039074 GCGATACCCTGACGATCCTG 60.039 60.000 0.00 0.00 0.00 3.86
314 372 0.605860 TCTCTAGCCTCGCGATACCC 60.606 60.000 10.36 0.00 0.00 3.69
349 407 7.437267 TCTTCGTCTTTAATTAGCGGGAATTAG 59.563 37.037 0.00 0.00 33.82 1.73
354 412 4.400251 TCTCTTCGTCTTTAATTAGCGGGA 59.600 41.667 0.00 0.00 0.00 5.14
367 427 3.093057 ACCTTATGCACTCTCTTCGTCT 58.907 45.455 0.00 0.00 0.00 4.18
397 457 5.850557 TGCCCCAGATTAATTGTTATGTG 57.149 39.130 0.00 0.00 0.00 3.21
398 458 7.784550 ACTAATGCCCCAGATTAATTGTTATGT 59.215 33.333 0.00 0.00 0.00 2.29
406 466 5.957774 ACACAAACTAATGCCCCAGATTAAT 59.042 36.000 0.00 0.00 0.00 1.40
594 665 8.415553 TCAAACCAATTATGCTCCATATCTTTG 58.584 33.333 0.00 0.00 0.00 2.77
595 666 8.537728 TCAAACCAATTATGCTCCATATCTTT 57.462 30.769 0.00 0.00 0.00 2.52
598 669 6.810182 GCATCAAACCAATTATGCTCCATATC 59.190 38.462 0.00 0.00 41.16 1.63
599 670 6.694447 GCATCAAACCAATTATGCTCCATAT 58.306 36.000 0.00 0.00 41.16 1.78
600 671 6.088016 GCATCAAACCAATTATGCTCCATA 57.912 37.500 0.00 0.00 41.16 2.74
601 672 4.952460 GCATCAAACCAATTATGCTCCAT 58.048 39.130 0.00 0.00 41.16 3.41
602 673 4.389890 GCATCAAACCAATTATGCTCCA 57.610 40.909 0.00 0.00 41.16 3.86
606 677 7.775397 AATGTTAGCATCAAACCAATTATGC 57.225 32.000 0.00 0.00 43.97 3.14
607 678 8.605746 CCAAATGTTAGCATCAAACCAATTATG 58.394 33.333 0.00 0.00 33.50 1.90
608 679 7.280652 GCCAAATGTTAGCATCAAACCAATTAT 59.719 33.333 0.00 0.00 33.50 1.28
609 680 6.593382 GCCAAATGTTAGCATCAAACCAATTA 59.407 34.615 0.00 0.00 33.50 1.40
610 681 5.412286 GCCAAATGTTAGCATCAAACCAATT 59.588 36.000 0.00 0.00 33.50 2.32
611 682 4.937015 GCCAAATGTTAGCATCAAACCAAT 59.063 37.500 0.00 0.00 33.50 3.16
612 683 4.202295 TGCCAAATGTTAGCATCAAACCAA 60.202 37.500 0.00 0.00 33.50 3.67
613 684 3.323115 TGCCAAATGTTAGCATCAAACCA 59.677 39.130 0.00 0.00 33.50 3.67
614 685 3.924144 TGCCAAATGTTAGCATCAAACC 58.076 40.909 0.00 0.00 33.50 3.27
615 686 5.671825 GCAATGCCAAATGTTAGCATCAAAC 60.672 40.000 0.00 0.00 46.17 2.93
616 687 4.392445 GCAATGCCAAATGTTAGCATCAAA 59.608 37.500 0.00 0.00 46.17 2.69
617 688 3.933955 GCAATGCCAAATGTTAGCATCAA 59.066 39.130 0.00 0.00 46.17 2.57
618 689 3.523547 GCAATGCCAAATGTTAGCATCA 58.476 40.909 0.00 0.00 46.17 3.07
655 726 6.797995 GCAACTTTTGATATTGCCAATTGTTG 59.202 34.615 4.43 0.16 42.32 3.33
656 727 6.901265 GCAACTTTTGATATTGCCAATTGTT 58.099 32.000 4.43 0.00 42.32 2.83
657 728 6.484818 GCAACTTTTGATATTGCCAATTGT 57.515 33.333 4.43 0.00 42.32 2.71
664 735 7.201548 CCAACTATTGGCAACTTTTGATATTGC 60.202 37.037 0.00 0.00 45.17 3.56
665 736 8.188531 CCAACTATTGGCAACTTTTGATATTG 57.811 34.615 0.00 0.00 45.17 1.90
681 752 5.463061 CCTCACAAAAAGTTGCCAACTATTG 59.537 40.000 23.68 23.68 41.91 1.90
682 753 5.128663 ACCTCACAAAAAGTTGCCAACTATT 59.871 36.000 11.10 6.62 41.91 1.73
683 754 4.649218 ACCTCACAAAAAGTTGCCAACTAT 59.351 37.500 11.10 0.00 41.91 2.12
684 755 4.020543 ACCTCACAAAAAGTTGCCAACTA 58.979 39.130 11.10 0.00 41.91 2.24
685 756 2.831526 ACCTCACAAAAAGTTGCCAACT 59.168 40.909 3.74 3.74 45.46 3.16
686 757 3.245518 ACCTCACAAAAAGTTGCCAAC 57.754 42.857 0.00 0.00 38.39 3.77
687 758 3.594134 CAACCTCACAAAAAGTTGCCAA 58.406 40.909 0.00 0.00 38.39 4.52
688 759 2.093764 CCAACCTCACAAAAAGTTGCCA 60.094 45.455 0.00 0.00 38.58 4.92
689 760 2.549926 CCAACCTCACAAAAAGTTGCC 58.450 47.619 0.00 0.00 38.58 4.52
690 761 1.933181 GCCAACCTCACAAAAAGTTGC 59.067 47.619 0.00 0.00 38.58 4.17
691 762 3.244033 TGCCAACCTCACAAAAAGTTG 57.756 42.857 0.00 0.00 39.41 3.16
692 763 3.260632 ACTTGCCAACCTCACAAAAAGTT 59.739 39.130 0.00 0.00 0.00 2.66
693 764 2.831526 ACTTGCCAACCTCACAAAAAGT 59.168 40.909 0.00 0.00 0.00 2.66
694 765 3.525268 ACTTGCCAACCTCACAAAAAG 57.475 42.857 0.00 0.00 0.00 2.27
695 766 5.172205 GTTTACTTGCCAACCTCACAAAAA 58.828 37.500 0.00 0.00 0.00 1.94
696 767 4.220821 TGTTTACTTGCCAACCTCACAAAA 59.779 37.500 0.00 0.00 0.00 2.44
697 768 3.764434 TGTTTACTTGCCAACCTCACAAA 59.236 39.130 0.00 0.00 0.00 2.83
698 769 3.357203 TGTTTACTTGCCAACCTCACAA 58.643 40.909 0.00 0.00 0.00 3.33
699 770 3.006112 TGTTTACTTGCCAACCTCACA 57.994 42.857 0.00 0.00 0.00 3.58
700 771 3.305335 CCATGTTTACTTGCCAACCTCAC 60.305 47.826 0.00 0.00 0.00 3.51
701 772 2.890311 CCATGTTTACTTGCCAACCTCA 59.110 45.455 0.00 0.00 0.00 3.86
702 773 2.890945 ACCATGTTTACTTGCCAACCTC 59.109 45.455 0.00 0.00 0.00 3.85
703 774 2.957474 ACCATGTTTACTTGCCAACCT 58.043 42.857 0.00 0.00 0.00 3.50
704 775 3.366985 GCTACCATGTTTACTTGCCAACC 60.367 47.826 0.00 0.00 0.00 3.77
705 776 3.366985 GGCTACCATGTTTACTTGCCAAC 60.367 47.826 0.00 0.00 38.99 3.77
706 777 2.823154 GGCTACCATGTTTACTTGCCAA 59.177 45.455 0.00 0.00 38.99 4.52
707 778 2.224892 TGGCTACCATGTTTACTTGCCA 60.225 45.455 0.00 0.00 45.51 4.92
708 779 2.442413 TGGCTACCATGTTTACTTGCC 58.558 47.619 0.00 0.00 39.53 4.52
709 780 3.366985 GGTTGGCTACCATGTTTACTTGC 60.367 47.826 13.41 0.00 46.92 4.01
710 781 4.434713 GGTTGGCTACCATGTTTACTTG 57.565 45.455 13.41 0.00 46.92 3.16
722 793 2.257353 CCAGTGCTTGGTTGGCTAC 58.743 57.895 0.21 0.00 42.41 3.58
723 794 4.819783 CCAGTGCTTGGTTGGCTA 57.180 55.556 0.21 0.00 42.41 3.93
731 802 2.545106 GCCAAATTTTGTCCAGTGCTTG 59.455 45.455 8.26 0.00 0.00 4.01
732 803 2.170187 TGCCAAATTTTGTCCAGTGCTT 59.830 40.909 8.26 0.00 0.00 3.91
733 804 1.761784 TGCCAAATTTTGTCCAGTGCT 59.238 42.857 8.26 0.00 0.00 4.40
734 805 2.237393 TGCCAAATTTTGTCCAGTGC 57.763 45.000 8.26 4.08 0.00 4.40
735 806 4.555116 GCAAATGCCAAATTTTGTCCAGTG 60.555 41.667 8.26 8.10 35.69 3.66
736 807 3.565063 GCAAATGCCAAATTTTGTCCAGT 59.435 39.130 8.26 2.11 35.69 4.00
737 808 4.149910 GCAAATGCCAAATTTTGTCCAG 57.850 40.909 8.26 0.00 35.69 3.86
759 830 5.503498 CAAAAATTGACATGCCAACAGTTG 58.497 37.500 6.28 6.28 0.00 3.16
760 831 4.575645 CCAAAAATTGACATGCCAACAGTT 59.424 37.500 0.00 0.00 0.00 3.16
761 832 4.128643 CCAAAAATTGACATGCCAACAGT 58.871 39.130 0.00 0.00 0.00 3.55
762 833 3.058777 GCCAAAAATTGACATGCCAACAG 60.059 43.478 0.00 0.00 0.00 3.16
763 834 2.877168 GCCAAAAATTGACATGCCAACA 59.123 40.909 0.00 0.00 0.00 3.33
764 835 2.877168 TGCCAAAAATTGACATGCCAAC 59.123 40.909 0.00 0.00 0.00 3.77
765 836 3.204306 TGCCAAAAATTGACATGCCAA 57.796 38.095 0.00 0.00 0.00 4.52
766 837 2.924757 TGCCAAAAATTGACATGCCA 57.075 40.000 0.00 0.00 0.00 4.92
767 838 3.336468 TGATGCCAAAAATTGACATGCC 58.664 40.909 0.00 0.00 33.73 4.40
768 839 5.148568 GTTTGATGCCAAAAATTGACATGC 58.851 37.500 0.00 0.00 43.18 4.06
769 840 5.238868 TGGTTTGATGCCAAAAATTGACATG 59.761 36.000 0.00 0.00 43.18 3.21
770 841 5.374921 TGGTTTGATGCCAAAAATTGACAT 58.625 33.333 0.00 0.00 43.18 3.06
771 842 4.774124 TGGTTTGATGCCAAAAATTGACA 58.226 34.783 0.00 0.00 43.18 3.58
772 843 5.747951 TTGGTTTGATGCCAAAAATTGAC 57.252 34.783 0.00 0.00 43.18 3.18
781 852 3.768215 TGAGCATAATTGGTTTGATGCCA 59.232 39.130 5.24 1.86 44.65 4.92
782 853 4.389890 TGAGCATAATTGGTTTGATGCC 57.610 40.909 5.24 0.00 44.65 4.40
783 854 5.593968 TCATGAGCATAATTGGTTTGATGC 58.406 37.500 0.00 1.15 44.05 3.91
784 855 8.354426 TGTATCATGAGCATAATTGGTTTGATG 58.646 33.333 0.09 0.00 32.62 3.07
785 856 8.355169 GTGTATCATGAGCATAATTGGTTTGAT 58.645 33.333 0.09 8.55 32.62 2.57
786 857 7.338957 TGTGTATCATGAGCATAATTGGTTTGA 59.661 33.333 0.09 0.00 32.62 2.69
787 858 7.433131 GTGTGTATCATGAGCATAATTGGTTTG 59.567 37.037 0.09 0.00 32.62 2.93
788 859 7.416664 GGTGTGTATCATGAGCATAATTGGTTT 60.417 37.037 0.09 0.00 32.62 3.27
789 860 6.039717 GGTGTGTATCATGAGCATAATTGGTT 59.960 38.462 0.09 0.00 32.62 3.67
790 861 5.532406 GGTGTGTATCATGAGCATAATTGGT 59.468 40.000 0.09 0.00 35.95 3.67
791 862 5.048504 GGGTGTGTATCATGAGCATAATTGG 60.049 44.000 0.09 0.00 0.00 3.16
792 863 5.766670 AGGGTGTGTATCATGAGCATAATTG 59.233 40.000 0.09 0.00 0.00 2.32
793 864 5.945310 AGGGTGTGTATCATGAGCATAATT 58.055 37.500 0.09 0.00 0.00 1.40
794 865 5.573380 AGGGTGTGTATCATGAGCATAAT 57.427 39.130 0.09 0.00 0.00 1.28
795 866 5.125356 CAAGGGTGTGTATCATGAGCATAA 58.875 41.667 0.09 0.00 0.00 1.90
796 867 4.164030 ACAAGGGTGTGTATCATGAGCATA 59.836 41.667 0.09 0.00 36.31 3.14
797 868 3.054139 ACAAGGGTGTGTATCATGAGCAT 60.054 43.478 0.09 0.00 36.31 3.79
798 869 2.305635 ACAAGGGTGTGTATCATGAGCA 59.694 45.455 0.09 0.00 36.31 4.26
799 870 2.991250 ACAAGGGTGTGTATCATGAGC 58.009 47.619 0.09 0.00 36.31 4.26
1241 1368 1.901650 CTGCAAGGAGAAACGACCGC 61.902 60.000 0.00 0.00 0.00 5.68
1309 1442 2.213499 AGGTTTGTTGAAGACGAGCAG 58.787 47.619 0.00 0.00 0.00 4.24
1404 1537 1.432514 TCGTTGTCTTCTCTGCATGC 58.567 50.000 11.82 11.82 0.00 4.06
1477 1625 1.455587 CCACTGCCAACACCACCTT 60.456 57.895 0.00 0.00 0.00 3.50
1533 1681 1.977412 GTCTCTGACGAGTAAACGCAC 59.023 52.381 0.00 0.00 38.45 5.34
1663 1811 2.158534 TCCCAGCAAGCTTCCAGTAAAA 60.159 45.455 0.00 0.00 0.00 1.52
1770 1918 4.216257 GCCCGCATAATCAAGAACATGTAT 59.784 41.667 0.00 0.00 0.00 2.29
2151 2560 8.070034 ACCATATATGCCATGAACCAATTATG 57.930 34.615 7.24 1.63 0.00 1.90
2382 2880 0.040058 AGACCAATTGCAGGCCATCA 59.960 50.000 5.01 0.00 0.00 3.07
2422 2920 6.532657 AGCTCTGACTTGAACAACAAAAATTG 59.467 34.615 0.00 0.00 38.08 2.32
2472 2975 5.769662 TGTAAGCAAAGAGTTGTGGATGATT 59.230 36.000 0.00 0.00 37.06 2.57
2648 3152 3.295093 TCAATTGAACAGGAAGGCAACA 58.705 40.909 5.45 0.00 41.41 3.33
2667 3171 1.985473 ACTGAAAGCATGGCAGTTCA 58.015 45.000 0.00 0.00 39.69 3.18
2736 3240 3.499563 GCTATCTGGAGCTAGAGGGAGAA 60.500 52.174 0.00 0.00 39.50 2.87
2756 3261 4.767409 GGAAAGGGTAATGAGTTTTGAGCT 59.233 41.667 0.00 0.00 0.00 4.09
2777 3282 6.884295 CCACTTAACATATTCACAAAGAGGGA 59.116 38.462 0.00 0.00 0.00 4.20
2926 3617 8.358148 ACGTAGAGGTAACACCATATAAATCAG 58.642 37.037 0.00 0.00 41.95 2.90
3125 4011 4.168760 ACTGCAATAAATCGAGCAAAAGC 58.831 39.130 0.00 0.00 36.44 3.51
3135 4021 8.745837 CAATCATCCGTAAAACTGCAATAAATC 58.254 33.333 0.00 0.00 0.00 2.17
3575 4534 5.994250 TCTGGCTTAAAGCTCATAGACATT 58.006 37.500 0.00 0.00 41.99 2.71
3589 4548 2.871096 ACCCGAAACATCTGGCTTAA 57.129 45.000 0.00 0.00 0.00 1.85
3593 4552 0.958822 ACAAACCCGAAACATCTGGC 59.041 50.000 0.00 0.00 0.00 4.85
3595 4554 2.393764 GCAACAAACCCGAAACATCTG 58.606 47.619 0.00 0.00 0.00 2.90
3672 4631 7.678690 GCGCTATTTAAAACTTTGCATCCTAGA 60.679 37.037 0.00 0.00 0.00 2.43
3681 4640 5.275280 GCTTAGCGCGCTATTTAAAACTTTG 60.275 40.000 38.51 15.49 0.00 2.77
3682 4641 4.791676 GCTTAGCGCGCTATTTAAAACTTT 59.208 37.500 38.51 13.72 0.00 2.66
3683 4642 4.142773 TGCTTAGCGCGCTATTTAAAACTT 60.143 37.500 38.51 13.94 43.27 2.66
3687 4646 3.807622 AGATGCTTAGCGCGCTATTTAAA 59.192 39.130 38.51 25.16 43.27 1.52
3688 4647 3.390135 AGATGCTTAGCGCGCTATTTAA 58.610 40.909 38.51 25.53 43.27 1.52
3689 4648 3.026630 AGATGCTTAGCGCGCTATTTA 57.973 42.857 38.51 26.65 43.27 1.40
3690 4649 1.871080 AGATGCTTAGCGCGCTATTT 58.129 45.000 38.51 23.54 43.27 1.40
3691 4650 1.871080 AAGATGCTTAGCGCGCTATT 58.129 45.000 38.51 26.01 43.27 1.73
3692 4651 2.600731 CTAAGATGCTTAGCGCGCTAT 58.399 47.619 38.51 26.50 43.27 2.97
3693 4652 1.930817 GCTAAGATGCTTAGCGCGCTA 60.931 52.381 35.48 35.48 43.27 4.26
3694 4653 1.218230 GCTAAGATGCTTAGCGCGCT 61.218 55.000 38.01 38.01 43.27 5.92
3695 4654 1.202816 GCTAAGATGCTTAGCGCGC 59.797 57.895 26.66 26.66 43.27 6.86
3699 4658 1.560860 CCGGCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
3700 4659 0.032130 TCCGGCGCTAAGATGCTTAG 59.968 55.000 7.64 9.30 0.00 2.18
3701 4660 0.249322 GTCCGGCGCTAAGATGCTTA 60.249 55.000 7.64 0.00 0.00 3.09
3702 4661 1.521681 GTCCGGCGCTAAGATGCTT 60.522 57.895 7.64 0.00 0.00 3.91
3703 4662 2.107141 GTCCGGCGCTAAGATGCT 59.893 61.111 7.64 0.00 0.00 3.79
3704 4663 2.967615 GGTCCGGCGCTAAGATGC 60.968 66.667 7.64 0.00 0.00 3.91
3705 4664 1.300233 GAGGTCCGGCGCTAAGATG 60.300 63.158 7.64 0.00 0.00 2.90
3706 4665 1.043673 AAGAGGTCCGGCGCTAAGAT 61.044 55.000 7.64 0.00 0.00 2.40
3707 4666 1.255667 AAAGAGGTCCGGCGCTAAGA 61.256 55.000 7.64 0.00 0.00 2.10
3708 4667 0.806492 GAAAGAGGTCCGGCGCTAAG 60.806 60.000 7.64 0.00 0.00 2.18
3709 4668 1.217244 GAAAGAGGTCCGGCGCTAA 59.783 57.895 7.64 0.00 0.00 3.09
3710 4669 0.394762 TAGAAAGAGGTCCGGCGCTA 60.395 55.000 7.64 0.00 0.00 4.26
3711 4670 1.668101 CTAGAAAGAGGTCCGGCGCT 61.668 60.000 7.64 0.00 0.00 5.92
3712 4671 1.227002 CTAGAAAGAGGTCCGGCGC 60.227 63.158 0.00 0.00 0.00 6.53
3713 4672 1.035932 TCCTAGAAAGAGGTCCGGCG 61.036 60.000 0.00 0.00 37.88 6.46
3714 4673 1.069358 CATCCTAGAAAGAGGTCCGGC 59.931 57.143 0.00 0.00 37.88 6.13
3715 4674 2.389715 ACATCCTAGAAAGAGGTCCGG 58.610 52.381 0.00 0.00 37.88 5.14
3716 4675 3.447586 TGAACATCCTAGAAAGAGGTCCG 59.552 47.826 0.00 0.00 37.88 4.79
3717 4676 4.468153 ACTGAACATCCTAGAAAGAGGTCC 59.532 45.833 0.00 0.00 37.88 4.46
3718 4677 5.669164 ACTGAACATCCTAGAAAGAGGTC 57.331 43.478 0.00 0.00 37.88 3.85
3719 4678 7.741554 AATACTGAACATCCTAGAAAGAGGT 57.258 36.000 0.00 0.00 37.88 3.85
3720 4679 7.713073 GGAAATACTGAACATCCTAGAAAGAGG 59.287 40.741 0.00 0.00 38.03 3.69
3721 4680 7.713073 GGGAAATACTGAACATCCTAGAAAGAG 59.287 40.741 0.00 0.00 0.00 2.85
3722 4681 7.403231 AGGGAAATACTGAACATCCTAGAAAGA 59.597 37.037 0.00 0.00 0.00 2.52
3723 4682 7.497249 CAGGGAAATACTGAACATCCTAGAAAG 59.503 40.741 0.00 0.00 38.20 2.62
3724 4683 7.037586 ACAGGGAAATACTGAACATCCTAGAAA 60.038 37.037 0.00 0.00 39.24 2.52
3725 4684 6.443849 ACAGGGAAATACTGAACATCCTAGAA 59.556 38.462 0.00 0.00 39.24 2.10
3726 4685 5.964477 ACAGGGAAATACTGAACATCCTAGA 59.036 40.000 0.00 0.00 39.24 2.43
3727 4686 6.240549 ACAGGGAAATACTGAACATCCTAG 57.759 41.667 0.00 0.00 39.24 3.02
3728 4687 7.743116 TTACAGGGAAATACTGAACATCCTA 57.257 36.000 0.00 0.00 39.24 2.94
3729 4688 6.636454 TTACAGGGAAATACTGAACATCCT 57.364 37.500 0.00 0.00 39.24 3.24
3730 4689 6.263168 CCATTACAGGGAAATACTGAACATCC 59.737 42.308 0.00 0.00 39.24 3.51
3731 4690 7.054124 TCCATTACAGGGAAATACTGAACATC 58.946 38.462 0.00 0.00 39.24 3.06
3732 4691 6.969043 TCCATTACAGGGAAATACTGAACAT 58.031 36.000 0.00 0.00 39.24 2.71
3733 4692 6.012858 ACTCCATTACAGGGAAATACTGAACA 60.013 38.462 0.00 0.00 39.24 3.18
3734 4693 6.415573 ACTCCATTACAGGGAAATACTGAAC 58.584 40.000 0.00 0.00 39.24 3.18
3735 4694 6.636454 ACTCCATTACAGGGAAATACTGAA 57.364 37.500 0.00 0.00 39.24 3.02
3736 4695 6.636454 AACTCCATTACAGGGAAATACTGA 57.364 37.500 0.00 0.00 39.24 3.41
3737 4696 8.980481 AATAACTCCATTACAGGGAAATACTG 57.020 34.615 0.00 0.00 41.64 2.74
3738 4697 9.408648 CAAATAACTCCATTACAGGGAAATACT 57.591 33.333 0.00 0.00 33.11 2.12
3739 4698 8.630037 CCAAATAACTCCATTACAGGGAAATAC 58.370 37.037 0.00 0.00 33.11 1.89
3740 4699 8.561769 TCCAAATAACTCCATTACAGGGAAATA 58.438 33.333 0.00 0.00 33.11 1.40
3741 4700 7.342026 GTCCAAATAACTCCATTACAGGGAAAT 59.658 37.037 0.00 0.00 33.11 2.17
3742 4701 6.661805 GTCCAAATAACTCCATTACAGGGAAA 59.338 38.462 0.00 0.00 33.11 3.13
3784 4753 0.110486 TTCTGTTCCCAGTGAAGGCC 59.890 55.000 0.00 0.00 39.82 5.19
3795 4765 6.509418 TGGCTACATTTGTTATTCTGTTCC 57.491 37.500 0.00 0.00 0.00 3.62
3809 4779 7.761249 GCATATTCTCAAGTTTTTGGCTACATT 59.239 33.333 0.00 0.00 34.97 2.71
3855 4827 4.776795 ACGGTTCATTTTTATCACCACC 57.223 40.909 0.00 0.00 0.00 4.61
4050 5206 4.097892 CCTACAGCACCATAACCATTTTCC 59.902 45.833 0.00 0.00 0.00 3.13
4122 5278 0.036875 AGCACAGAGGGCCAAGTTAC 59.963 55.000 6.18 0.00 0.00 2.50
4126 5282 2.360852 CCAGCACAGAGGGCCAAG 60.361 66.667 6.18 0.00 0.00 3.61
4191 5347 4.481930 TTGTTAATCCAAGCAAGTCACG 57.518 40.909 0.00 0.00 0.00 4.35
4223 5380 3.568007 AGCAAATGAACCGCAAGAGTAAA 59.432 39.130 0.00 0.00 43.02 2.01
4295 5452 1.603802 ACATGAGACACAAGCAAACGG 59.396 47.619 0.00 0.00 0.00 4.44
4367 5842 1.086696 GTCATATGCAACACACGGCT 58.913 50.000 0.00 0.00 0.00 5.52
4428 5903 1.619827 CCACACAATCTGGTTGCCATT 59.380 47.619 0.00 0.00 41.69 3.16
4450 5925 2.375174 ACAAACTGAGGTAGATGGCCAA 59.625 45.455 10.96 0.00 0.00 4.52
4569 6047 1.065636 CAAGATCTTCAGGAGCTGCCA 60.066 52.381 4.57 0.00 40.09 4.92
4580 6058 5.128663 AGCTTCCTTCCTAGACAAGATCTTC 59.871 44.000 4.57 0.00 39.04 2.87
4739 6217 6.102897 AGGTATGGGATTTAGAGACATTCG 57.897 41.667 0.00 0.00 0.00 3.34
4741 6219 6.153924 AGGAGGTATGGGATTTAGAGACATT 58.846 40.000 0.00 0.00 0.00 2.71
4753 6233 1.668826 AGTGCAAAGGAGGTATGGGA 58.331 50.000 0.00 0.00 0.00 4.37
4792 6272 5.068855 TGACAACCAAAAGAGAATGCATTGA 59.931 36.000 18.59 0.00 0.00 2.57
4830 6311 3.044235 TCTGACTCGATGTTGCACAAT 57.956 42.857 0.00 0.00 0.00 2.71
4832 6313 2.749280 ATCTGACTCGATGTTGCACA 57.251 45.000 0.00 0.00 0.00 4.57
4916 6579 7.208225 ACAAAGAAATCCTTCTCAAGTAAGC 57.792 36.000 0.00 0.00 41.23 3.09
4919 6582 5.408604 GCGACAAAGAAATCCTTCTCAAGTA 59.591 40.000 0.00 0.00 41.23 2.24
4939 6602 0.031178 GGCAATCATCATTGGGCGAC 59.969 55.000 0.00 0.00 40.03 5.19
4973 6636 2.107366 TCGTATCATGCAGAGGGTGAA 58.893 47.619 0.00 0.00 0.00 3.18
4975 6638 2.036346 TGATCGTATCATGCAGAGGGTG 59.964 50.000 0.00 0.00 33.59 4.61
4976 6639 2.319844 TGATCGTATCATGCAGAGGGT 58.680 47.619 0.00 0.00 33.59 4.34
4977 6640 3.391506 TTGATCGTATCATGCAGAGGG 57.608 47.619 0.00 0.00 39.39 4.30
4978 6641 3.931468 GGATTGATCGTATCATGCAGAGG 59.069 47.826 9.16 0.00 39.39 3.69
4989 6652 4.987408 TTTCGGTACTGGATTGATCGTA 57.013 40.909 0.85 0.00 0.00 3.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.