AutoCloner

Multiple sequence alignment - TraesCS6B01G100200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G100200	chr6B	100.000	2312	0	0	1	2312	78152289	78149978	0.000000e+00	4270.0
1	TraesCS6B01G100200	chr6B	92.379	1299	69	15	353	1643	77958532	77957256	0.000000e+00	1823.0
2	TraesCS6B01G100200	chr6B	99.392	658	4	0	1655	2312	77923191	77922534	0.000000e+00	1194.0
3	TraesCS6B01G100200	chr6B	98.129	481	9	0	1	481	78157344	78156864	0.000000e+00	839.0
4	TraesCS6B01G100200	chr6B	82.997	794	96	25	732	1501	61490230	61491008	0.000000e+00	682.0
5	TraesCS6B01G100200	chr6B	84.713	628	71	19	748	1359	58319992	58319374	2.540000e-169	604.0
6	TraesCS6B01G100200	chr6B	83.115	687	80	21	794	1454	58807796	58807120	5.500000e-166	593.0
7	TraesCS6B01G100200	chr6B	93.558	326	21	0	1	326	77958855	77958530	9.600000e-134	486.0
8	TraesCS6B01G100200	chr6B	85.393	356	33	12	229	571	78238124	78237775	3.650000e-93	351.0
9	TraesCS6B01G100200	chr6B	79.276	304	38	5	1510	1806	58807099	58806814	3.030000e-44	189.0
10	TraesCS6B01G100200	chr6B	87.879	99	8	3	1807	1903	58806712	58806616	1.880000e-21	113.0
11	TraesCS6B01G100200	chr6B	80.870	115	22	0	1687	1801	79042272	79042158	8.800000e-15	91.6
12	TraesCS6B01G100200	chr6D	85.950	726	75	21	736	1448	29384560	29385271	0.000000e+00	750.0
13	TraesCS6B01G100200	chr6D	84.123	781	87	26	740	1505	28708335	28707577	0.000000e+00	721.0
14	TraesCS6B01G100200	chr6D	90.611	458	29	9	1001	1446	28992664	28992209	1.530000e-166	595.0
15	TraesCS6B01G100200	chr2B	86.733	603	58	17	727	1316	690677479	690676886	0.000000e+00	651.0
16	TraesCS6B01G100200	chr2B	83.333	180	26	4	1	178	289861911	289861734	1.840000e-36	163.0
17	TraesCS6B01G100200	chr6A	83.112	752	77	29	771	1505	33008826	33008108	6.970000e-180	640.0
18	TraesCS6B01G100200	chr2D	86.760	574	55	16	727	1290	574436391	574435829	9.070000e-174	619.0
19	TraesCS6B01G100200	chr2D	83.799	179	27	2	1	178	357245204	357245027	3.950000e-38	169.0
20	TraesCS6B01G100200	chrUn	87.429	525	55	10	794	1316	27335135	27335650	5.500000e-166	593.0
21	TraesCS6B01G100200	chrUn	93.578	109	7	0	229	337	112541857	112541965	1.840000e-36	163.0
22	TraesCS6B01G100200	chr4B	82.879	257	31	5	234	478	110413193	110413448	3.870000e-53	219.0
23	TraesCS6B01G100200	chr1D	88.000	175	21	0	1	175	403661740	403661914	8.370000e-50	207.0
24	TraesCS6B01G100200	chr1D	81.921	177	32	0	2	178	447378207	447378031	1.430000e-32	150.0
25	TraesCS6B01G100200	chr3D	85.000	180	23	4	1	178	580589685	580589508	1.830000e-41	180.0
26	TraesCS6B01G100200	chr5A	82.514	183	31	1	1	183	1797454	1797635	2.380000e-35	159.0
27	TraesCS6B01G100200	chr7D	81.818	176	29	3	1	175	638145011	638145184	6.660000e-31	145.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G100200	chr6B	78149978	78152289	2311	True	4270.000000	4270	100.000000	1	2312	1	chr6B.!!$R3	2311
1	TraesCS6B01G100200	chr6B	77922534	77923191	657	True	1194.000000	1194	99.392000	1655	2312	1	chr6B.!!$R2	657
2	TraesCS6B01G100200	chr6B	77957256	77958855	1599	True	1154.500000	1823	92.968500	1	1643	2	chr6B.!!$R8	1642
3	TraesCS6B01G100200	chr6B	61490230	61491008	778	False	682.000000	682	82.997000	732	1501	1	chr6B.!!$F1	769
4	TraesCS6B01G100200	chr6B	58319374	58319992	618	True	604.000000	604	84.713000	748	1359	1	chr6B.!!$R1	611
5	TraesCS6B01G100200	chr6B	58806616	58807796	1180	True	298.333333	593	83.423333	794	1903	3	chr6B.!!$R7	1109
6	TraesCS6B01G100200	chr6D	29384560	29385271	711	False	750.000000	750	85.950000	736	1448	1	chr6D.!!$F1	712
7	TraesCS6B01G100200	chr6D	28707577	28708335	758	True	721.000000	721	84.123000	740	1505	1	chr6D.!!$R1	765
8	TraesCS6B01G100200	chr2B	690676886	690677479	593	True	651.000000	651	86.733000	727	1316	1	chr2B.!!$R2	589
9	TraesCS6B01G100200	chr6A	33008108	33008826	718	True	640.000000	640	83.112000	771	1505	1	chr6A.!!$R1	734
10	TraesCS6B01G100200	chr2D	574435829	574436391	562	True	619.000000	619	86.760000	727	1290	1	chr2D.!!$R2	563
11	TraesCS6B01G100200	chrUn	27335135	27335650	515	False	593.000000	593	87.429000	794	1316	1	chrUn.!!$F1	522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
109	110	0.100682	TAGCTGTAGCGCAGTAGCAC	59.899	55.000	24.71	8.43	46.64	4.40	F
355	356	0.179161	ACTGTCTTAGCAGTAGCGCG	60.179	55.000	0.00	0.00	46.68	6.86	F
484	489	1.207593	GCTGGTTCATGTCACGCAC	59.792	57.895	0.00	0.00	0.00	5.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1065	1117	1.361668	CCTGGATGTTGTCGCGAAGG	61.362	60.000	12.06	7.74	0.00	3.46	R
1170	1222	1.556911	TCCAGGAAGATCTTGAGCACC	59.443	52.381	14.00	7.38	0.00	5.01	R
1599	1673	1.557443	GACGAGTCGTGGGCAACAAG	61.557	60.000	25.31	0.00	41.37	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	0.375106	GCAGTAGCGCATTCTCCAAC	59.625	55.000	11.47	0.00	0.00	3.77
75	76	1.227883	TAGCGCGGGAAAACCAACA	60.228	52.632	8.83	0.00	40.22	3.33
79	80	1.161843	CGCGGGAAAACCAACACTAT	58.838	50.000	0.00	0.00	40.22	2.12
109	110	0.100682	TAGCTGTAGCGCAGTAGCAC	59.899	55.000	24.71	8.43	46.64	4.40
145	146	2.749621	GCGCTAATGCTAGCCCAAATAT	59.250	45.455	13.29	0.00	46.80	1.28
150	151	3.513909	ATGCTAGCCCAAATATCAGCA	57.486	42.857	13.29	0.00	42.63	4.41
153	154	3.217626	GCTAGCCCAAATATCAGCACTT	58.782	45.455	2.29	0.00	0.00	3.16
187	188	4.883021	TCCCTAGTAATGAGTGGAGAGT	57.117	45.455	0.00	0.00	0.00	3.24
203	204	0.461693	GAGTGAGAGTGAGGCCATGC	60.462	60.000	5.01	0.00	0.00	4.06
220	221	1.153628	GCGCGCGGGATAGGATAAT	60.154	57.895	33.06	0.00	0.00	1.28
235	236	7.125811	GGATAGGATAATGTGGGATTAGCAGTA	59.874	40.741	0.00	0.00	0.00	2.74
308	309	1.356527	GGTTGGCCGTAGTAGCAACG	61.357	60.000	0.00	0.00	40.01	4.10
313	314	1.136147	CCGTAGTAGCAACGCTCGT	59.864	57.895	0.00	0.00	40.44	4.18
336	337	3.839654	CGATCCGCGCTACTTCTAA	57.160	52.632	5.56	0.00	0.00	2.10
337	338	1.396644	CGATCCGCGCTACTTCTAAC	58.603	55.000	5.56	0.00	0.00	2.34
338	339	1.002684	CGATCCGCGCTACTTCTAACT	60.003	52.381	5.56	0.00	0.00	2.24
339	340	2.386249	GATCCGCGCTACTTCTAACTG	58.614	52.381	5.56	0.00	0.00	3.16
340	341	1.171308	TCCGCGCTACTTCTAACTGT	58.829	50.000	5.56	0.00	0.00	3.55
341	342	1.131883	TCCGCGCTACTTCTAACTGTC	59.868	52.381	5.56	0.00	0.00	3.51
342	343	1.132643	CCGCGCTACTTCTAACTGTCT	59.867	52.381	5.56	0.00	0.00	3.41
343	344	2.415625	CCGCGCTACTTCTAACTGTCTT	60.416	50.000	5.56	0.00	0.00	3.01
344	345	3.181503	CCGCGCTACTTCTAACTGTCTTA	60.182	47.826	5.56	0.00	0.00	2.10
345	346	4.029704	CGCGCTACTTCTAACTGTCTTAG	58.970	47.826	5.56	0.00	0.00	2.18
346	347	3.792421	GCGCTACTTCTAACTGTCTTAGC	59.208	47.826	0.00	0.00	0.00	3.09
347	348	4.674623	GCGCTACTTCTAACTGTCTTAGCA	60.675	45.833	0.00	0.00	31.82	3.49
348	349	5.031578	CGCTACTTCTAACTGTCTTAGCAG	58.968	45.833	0.00	2.94	41.92	4.24
354	355	3.723554	ACTGTCTTAGCAGTAGCGC	57.276	52.632	0.00	0.00	46.68	5.92
355	356	0.179161	ACTGTCTTAGCAGTAGCGCG	60.179	55.000	0.00	0.00	46.68	6.86
365	366	1.670083	AGTAGCGCGGACCCAAAAC	60.670	57.895	8.83	0.00	0.00	2.43
459	464	4.406069	CGCGCTACTACTAAACACTTACA	58.594	43.478	5.56	0.00	0.00	2.41
466	471	7.165483	GCTACTACTAAACACTTACATGTAGCG	59.835	40.741	5.56	4.36	39.39	4.26
483	488	2.316867	CGCTGGTTCATGTCACGCA	61.317	57.895	0.00	0.00	0.00	5.24
484	489	1.207593	GCTGGTTCATGTCACGCAC	59.792	57.895	0.00	0.00	0.00	5.34
539	545	9.824216	TGCACTATTAAGATCCTACCTATAAGT	57.176	33.333	0.00	0.00	0.00	2.24
640	646	3.054434	TCAAATATGTCAGGGTGGTCCAG	60.054	47.826	0.00	0.00	38.24	3.86
656	662	5.473504	GTGGTCCAGACAACAAACTATTCAT	59.526	40.000	0.23	0.00	35.34	2.57
657	663	6.653320	GTGGTCCAGACAACAAACTATTCATA	59.347	38.462	0.23	0.00	35.34	2.15
752	758	3.222603	ACAAATGACTCACTTGGAACCC	58.777	45.455	5.29	0.00	0.00	4.11
907	929	2.684038	GCACCCTCCTTCCCTTGATAAC	60.684	54.545	0.00	0.00	0.00	1.89
911	933	2.493091	CTCCTTCCCTTGATAACCCCT	58.507	52.381	0.00	0.00	0.00	4.79
1086	1138	2.796483	TTCGCGACAACATCCAGGGG	62.796	60.000	9.15	0.00	0.00	4.79
1327	1385	0.689623	CTGACCTGACCTGCTCCTTT	59.310	55.000	0.00	0.00	0.00	3.11
1328	1386	0.687354	TGACCTGACCTGCTCCTTTC	59.313	55.000	0.00	0.00	0.00	2.62
1330	1388	1.078848	CCTGACCTGCTCCTTTCCG	60.079	63.158	0.00	0.00	0.00	4.30
1449	1523	6.246420	AGGCGATTAATCTGAATGCAATAC	57.754	37.500	13.45	0.00	0.00	1.89
1517	1591	2.364970	TGGAATTGTTGGTTCTTGGCTG	59.635	45.455	0.00	0.00	0.00	4.85
1599	1673	5.694674	TTTTCAGTTGTCGAATTTGTTGC	57.305	34.783	0.00	0.00	0.00	4.17
1636	1710	3.133362	TCGTCAAGTTTCACCCTGTAACT	59.867	43.478	0.00	0.00	39.21	2.24
1643	1717	4.347000	AGTTTCACCCTGTAACTAGAAGCA	59.653	41.667	0.00	0.00	36.44	3.91
1644	1718	4.967084	TTCACCCTGTAACTAGAAGCAA	57.033	40.909	0.00	0.00	0.00	3.91
1645	1719	4.267349	TCACCCTGTAACTAGAAGCAAC	57.733	45.455	0.00	0.00	0.00	4.17
1646	1720	3.644265	TCACCCTGTAACTAGAAGCAACA	59.356	43.478	0.00	0.00	0.00	3.33
1647	1721	4.286032	TCACCCTGTAACTAGAAGCAACAT	59.714	41.667	0.00	0.00	0.00	2.71
1648	1722	4.631813	CACCCTGTAACTAGAAGCAACATC	59.368	45.833	0.00	0.00	0.00	3.06
1649	1723	4.532521	ACCCTGTAACTAGAAGCAACATCT	59.467	41.667	0.00	0.00	0.00	2.90
1650	1724	5.720041	ACCCTGTAACTAGAAGCAACATCTA	59.280	40.000	0.00	0.00	0.00	1.98
1651	1725	6.043411	CCCTGTAACTAGAAGCAACATCTAC	58.957	44.000	0.00	0.00	0.00	2.59
1652	1726	6.127310	CCCTGTAACTAGAAGCAACATCTACT	60.127	42.308	0.00	0.00	0.00	2.57
1653	1727	7.068348	CCCTGTAACTAGAAGCAACATCTACTA	59.932	40.741	0.00	0.00	0.00	1.82
1955	2138	4.286297	TCTACACCCAAAATGGTCTCTG	57.714	45.455	0.00	0.00	36.12	3.35
1983	2166	5.300969	TCTCACAATATGCTGCAAGAAAC	57.699	39.130	6.36	0.00	34.07	2.78
2182	2365	1.079127	GGCGCTTTGCTCTAGTCCA	60.079	57.895	7.64	0.00	45.43	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	1.133790	ACTTAGTAGTAGCGCGGGTTG	59.866	52.381	8.83	0.00	31.21	3.77
28	29	2.965477	CTACTTAGTAGTAGCGCGGG	57.035	55.000	8.83	0.00	45.33	6.13
58	59	2.517402	TGTTGGTTTTCCCGCGCT	60.517	55.556	5.56	0.00	39.73	5.92
103	104	1.810030	GTGCCCGTGCTAGTGCTAC	60.810	63.158	0.00	0.00	40.48	3.58
150	151	1.988846	AGGGAAAAGCCTAGCAGAAGT	59.011	47.619	0.00	0.00	36.66	3.01
153	154	2.834113	ACTAGGGAAAAGCCTAGCAGA	58.166	47.619	0.00	0.00	39.48	4.26
175	176	3.355378	CTCACTCTCACTCTCCACTCAT	58.645	50.000	0.00	0.00	0.00	2.90
187	188	2.580815	CGCATGGCCTCACTCTCA	59.419	61.111	3.32	0.00	0.00	3.27
203	204	0.108804	ACATTATCCTATCCCGCGCG	60.109	55.000	25.67	25.67	0.00	6.86
220	221	0.179084	GCGCTACTGCTAATCCCACA	60.179	55.000	0.00	0.00	36.97	4.17
261	262	1.700600	GCTCAGCGGCTCAACTTAGC	61.701	60.000	0.00	0.00	41.99	3.09
298	299	1.509463	CCCACGAGCGTTGCTACTA	59.491	57.895	0.00	0.00	39.88	1.82
300	301	2.813908	CCCCACGAGCGTTGCTAC	60.814	66.667	0.00	0.00	39.88	3.58
321	322	1.131883	GACAGTTAGAAGTAGCGCGGA	59.868	52.381	8.83	0.00	0.00	5.54
337	338	0.867753	CCGCGCTACTGCTAAGACAG	60.868	60.000	5.56	0.00	43.59	3.51
338	339	1.138883	CCGCGCTACTGCTAAGACA	59.861	57.895	5.56	0.00	36.97	3.41
339	340	0.866483	GTCCGCGCTACTGCTAAGAC	60.866	60.000	5.56	0.00	36.97	3.01
340	341	1.432251	GTCCGCGCTACTGCTAAGA	59.568	57.895	5.56	0.00	36.97	2.10
341	342	1.589196	GGTCCGCGCTACTGCTAAG	60.589	63.158	5.56	0.00	36.97	2.18
342	343	2.493030	GGTCCGCGCTACTGCTAA	59.507	61.111	5.56	0.00	36.97	3.09
343	344	3.524606	GGGTCCGCGCTACTGCTA	61.525	66.667	5.56	0.00	36.97	3.49
345	346	4.752879	TTGGGTCCGCGCTACTGC	62.753	66.667	5.56	0.00	0.00	4.40
346	347	1.669760	TTTTGGGTCCGCGCTACTG	60.670	57.895	5.56	0.00	0.00	2.74
347	348	1.670083	GTTTTGGGTCCGCGCTACT	60.670	57.895	5.56	0.00	0.00	2.57
348	349	2.683859	GGTTTTGGGTCCGCGCTAC	61.684	63.158	5.56	3.13	0.00	3.58
349	350	2.358984	GGTTTTGGGTCCGCGCTA	60.359	61.111	5.56	0.00	0.00	4.26
350	351	4.572571	TGGTTTTGGGTCCGCGCT	62.573	61.111	5.56	0.00	0.00	5.92
351	352	3.597728	TTGGTTTTGGGTCCGCGC	61.598	61.111	0.00	0.00	0.00	6.86
352	353	2.333581	GTTGGTTTTGGGTCCGCG	59.666	61.111	0.00	0.00	0.00	6.46
353	354	1.066752	GTGTTGGTTTTGGGTCCGC	59.933	57.895	0.00	0.00	0.00	5.54
354	355	0.383949	CAGTGTTGGTTTTGGGTCCG	59.616	55.000	0.00	0.00	0.00	4.79
355	356	0.104120	GCAGTGTTGGTTTTGGGTCC	59.896	55.000	0.00	0.00	0.00	4.46
365	366	0.606604	ACCCGTAGTAGCAGTGTTGG	59.393	55.000	0.00	0.00	0.00	3.77
405	410	0.179108	CCCGCTACTGCTAAGTGGTC	60.179	60.000	10.76	0.00	42.07	4.02
430	435	1.386525	TAGTAGTAGCGCGGGGTTGG	61.387	60.000	10.18	0.00	0.00	3.77
459	464	1.066215	TGACATGAACCAGCGCTACAT	60.066	47.619	10.99	11.01	0.00	2.29
466	471	1.207593	GTGCGTGACATGAACCAGC	59.792	57.895	0.00	0.00	0.00	4.85
539	545	4.080526	GGAGCACCCACTATTAGGAGAAAA	60.081	45.833	0.00	0.00	34.14	2.29
571	577	0.179070	GAGAGAAGGGGGCATTCGAC	60.179	60.000	0.00	0.00	0.00	4.20
622	628	2.568546	TCTGGACCACCCTGACATAT	57.431	50.000	0.00	0.00	37.89	1.78
717	723	9.736023	GTGAGTCATTTGTTTCTTCAGTTTATT	57.264	29.630	0.00	0.00	0.00	1.40
718	724	9.125026	AGTGAGTCATTTGTTTCTTCAGTTTAT	57.875	29.630	0.00	0.00	0.00	1.40
719	725	8.506168	AGTGAGTCATTTGTTTCTTCAGTTTA	57.494	30.769	0.00	0.00	0.00	2.01
720	726	7.396540	AGTGAGTCATTTGTTTCTTCAGTTT	57.603	32.000	0.00	0.00	0.00	2.66
721	727	7.253422	CAAGTGAGTCATTTGTTTCTTCAGTT	58.747	34.615	17.72	0.00	0.00	3.16
752	758	2.472488	GCTCAACAAGGTTGATTTTGCG	59.528	45.455	11.76	1.72	0.00	4.85
907	929	3.241520	GGGGGAATCGAAGAGGGG	58.758	66.667	0.00	0.00	43.63	4.79
1065	1117	1.361668	CCTGGATGTTGTCGCGAAGG	61.362	60.000	12.06	7.74	0.00	3.46
1068	1120	2.264480	CCCTGGATGTTGTCGCGA	59.736	61.111	3.71	3.71	0.00	5.87
1170	1222	1.556911	TCCAGGAAGATCTTGAGCACC	59.443	52.381	14.00	7.38	0.00	5.01
1327	1385	3.006112	AGCAGAGTTGACTAGATCGGA	57.994	47.619	0.00	0.00	0.00	4.55
1328	1386	3.304391	GCTAGCAGAGTTGACTAGATCGG	60.304	52.174	10.63	0.00	35.16	4.18
1330	1388	4.792704	GCAGCTAGCAGAGTTGACTAGATC	60.793	50.000	18.83	0.00	44.79	2.75
1449	1523	9.729023	TGCAAGAACCAACGATTTATATATTTG	57.271	29.630	0.00	0.00	0.00	2.32
1460	1534	3.003689	CACTTCTTGCAAGAACCAACGAT	59.996	43.478	32.86	13.68	39.95	3.73
1462	1536	2.354510	TCACTTCTTGCAAGAACCAACG	59.645	45.455	32.86	25.11	39.95	4.10
1517	1591	9.046091	TTTCAACGGAAACATATCGAGAGATGC	62.046	40.741	7.53	0.00	43.57	3.91
1599	1673	1.557443	GACGAGTCGTGGGCAACAAG	61.557	60.000	25.31	0.00	41.37	3.16
1636	1710	8.577048	ACAAGTAGTAGTAGATGTTGCTTCTA	57.423	34.615	0.00	0.00	0.00	2.10
1646	1720	9.751542	GCATATCACAAACAAGTAGTAGTAGAT	57.248	33.333	0.00	0.00	0.00	1.98
1647	1721	8.967918	AGCATATCACAAACAAGTAGTAGTAGA	58.032	33.333	0.00	0.00	0.00	2.59
1648	1722	9.239002	GAGCATATCACAAACAAGTAGTAGTAG	57.761	37.037	0.00	0.00	0.00	2.57
1649	1723	8.967918	AGAGCATATCACAAACAAGTAGTAGTA	58.032	33.333	0.00	0.00	0.00	1.82
1650	1724	7.761704	CAGAGCATATCACAAACAAGTAGTAGT	59.238	37.037	0.00	0.00	0.00	2.73
1651	1725	7.976175	TCAGAGCATATCACAAACAAGTAGTAG	59.024	37.037	0.00	0.00	0.00	2.57
1652	1726	7.759886	GTCAGAGCATATCACAAACAAGTAGTA	59.240	37.037	0.00	0.00	0.00	1.82
1653	1727	6.591834	GTCAGAGCATATCACAAACAAGTAGT	59.408	38.462	0.00	0.00	0.00	2.73
1955	2138	3.376234	TGCAGCATATTGTGAGAAGAAGC	59.624	43.478	0.00	0.00	0.00	3.86
1983	2166	3.851458	TCACCCATCAATCATCCTCTG	57.149	47.619	0.00	0.00	0.00	3.35
2182	2365	4.040217	CCTTGTATGCATAGCTCTTCTCCT	59.960	45.833	6.67	0.00	0.00	3.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.