Multiple sequence alignment - TraesCS6B01G100000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G100000 chr6B 100.000 6777 0 0 1 6777 77779789 77773013 0.000000e+00 12515.0
1 TraesCS6B01G100000 chr6B 93.878 98 5 1 6379 6476 28914352 28914256 5.480000e-31 147.0
2 TraesCS6B01G100000 chr6B 91.011 89 8 0 5492 5580 695054258 695054170 3.320000e-23 121.0
3 TraesCS6B01G100000 chr6B 100.000 28 0 0 5410 5437 77774176 77774149 1.200000e-02 52.8
4 TraesCS6B01G100000 chr6B 100.000 28 0 0 5614 5641 77774380 77774353 1.200000e-02 52.8
5 TraesCS6B01G100000 chrUn 95.080 5346 218 19 186 5496 112612473 112617808 0.000000e+00 8373.0
6 TraesCS6B01G100000 chrUn 93.929 593 32 2 5577 6165 112617806 112618398 0.000000e+00 893.0
7 TraesCS6B01G100000 chrUn 91.979 187 12 3 6585 6768 112618583 112618769 6.740000e-65 259.0
8 TraesCS6B01G100000 chrUn 94.268 157 9 0 1 157 112612013 112612169 2.440000e-59 241.0
9 TraesCS6B01G100000 chrUn 97.872 94 2 0 6388 6481 332242545 332242452 5.440000e-36 163.0
10 TraesCS6B01G100000 chrUn 89.655 58 2 2 6518 6571 112618529 112618586 3.390000e-08 71.3
11 TraesCS6B01G100000 chrUn 100.000 28 0 0 5614 5641 112617722 112617749 1.200000e-02 52.8
12 TraesCS6B01G100000 chrUn 100.000 28 0 0 5410 5437 112617843 112617870 1.200000e-02 52.8
13 TraesCS6B01G100000 chr7A 89.276 2499 258 6 2566 5060 13219226 13216734 0.000000e+00 3121.0
14 TraesCS6B01G100000 chr7A 78.561 2043 377 37 2662 4675 2715964 2717974 0.000000e+00 1290.0
15 TraesCS6B01G100000 chr7A 78.243 1480 224 50 1058 2500 13229221 13227803 0.000000e+00 859.0
16 TraesCS6B01G100000 chr7A 89.931 437 35 3 5059 5493 3020443 3020872 7.680000e-154 555.0
17 TraesCS6B01G100000 chr7A 81.190 622 89 15 4009 4616 9011899 9012506 6.150000e-130 475.0
18 TraesCS6B01G100000 chr7A 72.874 1611 342 61 3044 4608 2828704 2830265 3.700000e-127 466.0
19 TraesCS6B01G100000 chr7A 85.520 442 58 5 4353 4791 3019782 3020220 2.230000e-124 457.0
20 TraesCS6B01G100000 chr7A 79.039 687 125 14 3901 4578 3261495 3260819 2.880000e-123 453.0
21 TraesCS6B01G100000 chr7A 83.085 402 43 10 5653 6030 13216013 13215613 6.510000e-90 342.0
22 TraesCS6B01G100000 chr7A 87.500 272 32 2 4361 4632 2738557 2738826 5.100000e-81 313.0
23 TraesCS6B01G100000 chr7A 88.945 199 22 0 4864 5062 3020218 3020416 5.250000e-61 246.0
24 TraesCS6B01G100000 chr7A 75.504 347 70 6 5651 5983 3297733 3297388 9.100000e-34 156.0
25 TraesCS6B01G100000 chr7A 95.000 100 3 2 6378 6477 126943136 126943039 9.100000e-34 156.0
26 TraesCS6B01G100000 chr7A 75.216 347 71 6 5651 5983 3271837 3271492 4.230000e-32 150.0
27 TraesCS6B01G100000 chr1D 82.184 1987 325 18 2637 4610 456653457 456655427 0.000000e+00 1681.0
28 TraesCS6B01G100000 chr1D 82.207 444 63 5 5663 6090 456659645 456660088 1.070000e-97 368.0
29 TraesCS6B01G100000 chr1D 89.247 93 10 0 5491 5583 450147850 450147758 4.290000e-22 117.0
30 TraesCS6B01G100000 chr4A 82.977 1404 220 13 2661 4053 723517155 723515760 0.000000e+00 1251.0
31 TraesCS6B01G100000 chr4A 90.596 436 37 2 5059 5493 741503525 741503093 5.890000e-160 575.0
32 TraesCS6B01G100000 chr4A 87.385 436 43 6 5058 5493 739889860 739890283 2.200000e-134 490.0
33 TraesCS6B01G100000 chr4A 82.989 435 35 16 5059 5493 741433951 741434346 2.320000e-94 357.0
34 TraesCS6B01G100000 chr4A 86.833 281 27 3 5748 6027 739892906 739893177 8.540000e-79 305.0
35 TraesCS6B01G100000 chr4A 90.351 228 22 0 5266 5493 741449196 741449423 3.970000e-77 300.0
36 TraesCS6B01G100000 chr4A 79.670 364 48 7 5819 6156 741602663 741602300 8.780000e-59 239.0
37 TraesCS6B01G100000 chr4A 78.827 392 54 16 1496 1874 734474144 734473769 3.160000e-58 237.0
38 TraesCS6B01G100000 chr4A 88.679 106 11 1 6164 6268 739893260 739893365 1.980000e-25 128.0
39 TraesCS6B01G100000 chr4A 74.163 209 43 9 1084 1282 728503732 728503525 7.290000e-10 76.8
40 TraesCS6B01G100000 chr4A 96.875 32 1 0 5999 6030 741186141 741186110 3.000000e-03 54.7
41 TraesCS6B01G100000 chr5D 81.194 1558 264 17 3136 4676 29563569 29562024 0.000000e+00 1227.0
42 TraesCS6B01G100000 chr5D 84.493 1006 138 14 968 1957 29570311 29569308 0.000000e+00 977.0
43 TraesCS6B01G100000 chr5B 81.298 1032 115 38 771 1743 21697779 21696767 0.000000e+00 765.0
44 TraesCS6B01G100000 chr5B 83.816 414 54 6 4289 4697 21691436 21691031 1.380000e-101 381.0
45 TraesCS6B01G100000 chr5B 93.103 87 6 0 5493 5579 52308848 52308762 1.980000e-25 128.0
46 TraesCS6B01G100000 chr6A 92.938 439 27 4 237 671 45330205 45329767 2.670000e-178 636.0
47 TraesCS6B01G100000 chr2D 74.319 1359 273 49 2661 3978 603209354 603210677 2.180000e-139 507.0
48 TraesCS6B01G100000 chr2D 78.261 621 107 15 4009 4615 603210738 603211344 2.310000e-99 374.0
49 TraesCS6B01G100000 chr2D 91.860 86 7 0 5494 5579 81298282 81298197 3.320000e-23 121.0
50 TraesCS6B01G100000 chr7D 73.051 1321 281 61 3061 4348 2652114 2653392 1.370000e-106 398.0
51 TraesCS6B01G100000 chr7D 80.400 250 44 3 5781 6030 3209156 3208912 1.160000e-42 185.0
52 TraesCS6B01G100000 chr7D 97.849 93 2 0 6382 6474 594802409 594802501 1.960000e-35 161.0
53 TraesCS6B01G100000 chr7D 79.000 200 33 6 4138 4337 2625028 2624838 1.980000e-25 128.0
54 TraesCS6B01G100000 chr7D 75.714 210 38 11 1084 1282 10501149 10500942 7.240000e-15 93.5
55 TraesCS6B01G100000 chr7D 90.625 64 6 0 5712 5775 3827932 3827869 1.210000e-12 86.1
56 TraesCS6B01G100000 chr7B 81.773 406 59 10 5709 6099 674061590 674061185 6.550000e-85 326.0
57 TraesCS6B01G100000 chr7B 94.186 86 5 0 5493 5578 107127398 107127483 1.530000e-26 132.0
58 TraesCS6B01G100000 chr2A 98.901 91 1 0 6388 6478 44762170 44762260 5.440000e-36 163.0
59 TraesCS6B01G100000 chr2A 91.743 109 7 2 6379 6485 695512920 695512812 4.230000e-32 150.0
60 TraesCS6B01G100000 chr2B 96.842 95 3 0 6385 6479 127159441 127159535 7.030000e-35 159.0
61 TraesCS6B01G100000 chr2B 92.941 85 6 0 5497 5581 209085904 209085820 2.570000e-24 124.0
62 TraesCS6B01G100000 chr4B 93.396 106 5 2 6375 6478 14035345 14035240 9.100000e-34 156.0
63 TraesCS6B01G100000 chr3B 91.743 109 7 2 6378 6485 222196981 222197088 4.230000e-32 150.0
64 TraesCS6B01G100000 chr5A 92.222 90 4 2 5492 5579 313877744 313877656 2.570000e-24 124.0
65 TraesCS6B01G100000 chr3D 91.111 90 6 1 5494 5581 612886428 612886339 3.320000e-23 121.0
66 TraesCS6B01G100000 chr3A 91.860 86 7 0 5493 5578 127966325 127966240 3.320000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G100000 chr6B 77773013 77779789 6776 True 12515.000000 12515 100.000000 1 6777 1 chr6B.!!$R2 6776
1 TraesCS6B01G100000 chrUn 112612013 112618769 6756 False 1420.414286 8373 94.987286 1 6768 7 chrUn.!!$F1 6767
2 TraesCS6B01G100000 chr7A 13215613 13219226 3613 True 1731.500000 3121 86.180500 2566 6030 2 chr7A.!!$R6 3464
3 TraesCS6B01G100000 chr7A 2715964 2717974 2010 False 1290.000000 1290 78.561000 2662 4675 1 chr7A.!!$F1 2013
4 TraesCS6B01G100000 chr7A 13227803 13229221 1418 True 859.000000 859 78.243000 1058 2500 1 chr7A.!!$R4 1442
5 TraesCS6B01G100000 chr7A 9011899 9012506 607 False 475.000000 475 81.190000 4009 4616 1 chr7A.!!$F4 607
6 TraesCS6B01G100000 chr7A 2828704 2830265 1561 False 466.000000 466 72.874000 3044 4608 1 chr7A.!!$F3 1564
7 TraesCS6B01G100000 chr7A 3260819 3261495 676 True 453.000000 453 79.039000 3901 4578 1 chr7A.!!$R1 677
8 TraesCS6B01G100000 chr7A 3019782 3020872 1090 False 419.333333 555 88.132000 4353 5493 3 chr7A.!!$F5 1140
9 TraesCS6B01G100000 chr1D 456653457 456655427 1970 False 1681.000000 1681 82.184000 2637 4610 1 chr1D.!!$F1 1973
10 TraesCS6B01G100000 chr4A 723515760 723517155 1395 True 1251.000000 1251 82.977000 2661 4053 1 chr4A.!!$R1 1392
11 TraesCS6B01G100000 chr4A 739889860 739893365 3505 False 307.666667 490 87.632333 5058 6268 3 chr4A.!!$F3 1210
12 TraesCS6B01G100000 chr5D 29562024 29563569 1545 True 1227.000000 1227 81.194000 3136 4676 1 chr5D.!!$R1 1540
13 TraesCS6B01G100000 chr5D 29569308 29570311 1003 True 977.000000 977 84.493000 968 1957 1 chr5D.!!$R2 989
14 TraesCS6B01G100000 chr5B 21696767 21697779 1012 True 765.000000 765 81.298000 771 1743 1 chr5B.!!$R2 972
15 TraesCS6B01G100000 chr2D 603209354 603211344 1990 False 440.500000 507 76.290000 2661 4615 2 chr2D.!!$F1 1954
16 TraesCS6B01G100000 chr7D 2652114 2653392 1278 False 398.000000 398 73.051000 3061 4348 1 chr7D.!!$F1 1287

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 1244 0.032515 TGTATCCAGGCGAGGGAGAA 60.033 55.0 0.0 0.0 37.96 2.87 F
935 1245 0.389757 GTATCCAGGCGAGGGAGAAC 59.610 60.0 0.0 0.3 37.96 3.01 F
1465 1789 0.902048 CAGCACCCTGGAGTCAGAGA 60.902 60.0 0.0 0.0 43.49 3.10 F
2272 2672 2.103537 ACACAAGCCGGTGGTATAAC 57.896 50.0 1.9 0.0 43.08 1.89 F
2569 2972 0.329596 AGTGTCAGAATCCCTTGGGC 59.670 55.0 0.0 0.0 0.00 5.36 F
4342 4853 0.034059 ACTCAACTGGACAAGCTCGG 59.966 55.0 0.0 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 2172 0.768221 TGGTCCCAAGGCACTCTCTT 60.768 55.000 0.00 0.0 38.49 2.85 R
1941 2300 0.830648 GCTATGTAGTGTGGAGGCCA 59.169 55.000 5.01 0.0 0.00 5.36 R
2289 2689 0.884704 AGCCGTGCATCAAGTCGTTT 60.885 50.000 0.00 0.0 0.00 3.60 R
4181 4682 1.694150 ACAAACAGAGGCAGCTGACTA 59.306 47.619 25.52 0.0 39.20 2.59 R
4393 4904 1.373497 AGCTCGGTTGCGACTTCTG 60.373 57.895 3.59 0.0 38.13 3.02 R
6302 9591 0.371645 GCTCGCTACACAATCAGCAC 59.628 55.000 0.00 0.0 37.66 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.840651 CACTGGTAGGAGGAGTTGGATT 59.159 50.000 0.00 0.00 0.00 3.01
32 33 3.369997 GGAGGAGTTGGATTTGAGAGGAC 60.370 52.174 0.00 0.00 0.00 3.85
33 34 3.251484 AGGAGTTGGATTTGAGAGGACA 58.749 45.455 0.00 0.00 0.00 4.02
46 47 0.232303 GAGGACAACGTTCTTGTGCG 59.768 55.000 0.00 0.00 44.02 5.34
94 95 0.906756 CTCCACCTCCTCCTTGAGCA 60.907 60.000 0.00 0.00 0.00 4.26
125 126 5.591877 GGTGCTCCATCAATTAATCAGAACT 59.408 40.000 0.00 0.00 0.00 3.01
128 129 6.994496 TGCTCCATCAATTAATCAGAACTAGG 59.006 38.462 0.00 0.00 0.00 3.02
131 132 9.703892 CTCCATCAATTAATCAGAACTAGGTAG 57.296 37.037 0.00 0.00 0.00 3.18
152 153 3.707102 AGCCCTCTACTCAATTACCACTC 59.293 47.826 0.00 0.00 0.00 3.51
157 158 7.662897 CCCTCTACTCAATTACCACTCTAATC 58.337 42.308 0.00 0.00 0.00 1.75
158 159 7.256012 CCCTCTACTCAATTACCACTCTAATCC 60.256 44.444 0.00 0.00 0.00 3.01
160 161 5.632034 ACTCAATTACCACTCTAATCCCC 57.368 43.478 0.00 0.00 0.00 4.81
161 162 4.412528 ACTCAATTACCACTCTAATCCCCC 59.587 45.833 0.00 0.00 0.00 5.40
246 522 1.132500 CCGGCCTTAATCCCTCTTCT 58.868 55.000 0.00 0.00 0.00 2.85
344 621 2.044793 TGGGACCCTCAAACATCTCT 57.955 50.000 13.00 0.00 0.00 3.10
345 622 1.909302 TGGGACCCTCAAACATCTCTC 59.091 52.381 13.00 0.00 0.00 3.20
363 640 1.664659 CTCAGCTTCTGCCTTTGATCG 59.335 52.381 0.00 0.00 40.80 3.69
369 646 0.530744 TCTGCCTTTGATCGTAGCGT 59.469 50.000 0.00 0.00 0.00 5.07
487 764 5.010012 GGATAAACAATCTAATGCCACAGGG 59.990 44.000 0.00 0.00 34.75 4.45
521 798 2.683968 GGTTGCGACTTGACTCATGTA 58.316 47.619 3.59 0.00 0.00 2.29
576 853 1.581447 CAGGCGCCTTGTTTCTTCC 59.419 57.895 30.60 0.00 0.00 3.46
590 867 9.927668 CCTTGTTTCTTCCATTAATTTATGTGT 57.072 29.630 3.92 0.00 0.00 3.72
609 886 3.681897 GTGTCTGTGATGTCTTGCCTAAG 59.318 47.826 0.00 0.00 35.16 2.18
615 892 6.716628 TCTGTGATGTCTTGCCTAAGAAAATT 59.283 34.615 0.00 0.00 44.12 1.82
616 893 6.913170 TGTGATGTCTTGCCTAAGAAAATTC 58.087 36.000 0.00 0.00 44.12 2.17
617 894 6.716628 TGTGATGTCTTGCCTAAGAAAATTCT 59.283 34.615 0.00 0.00 44.12 2.40
618 895 7.025963 GTGATGTCTTGCCTAAGAAAATTCTG 58.974 38.462 0.00 0.00 44.12 3.02
619 896 6.716628 TGATGTCTTGCCTAAGAAAATTCTGT 59.283 34.615 0.00 0.00 44.12 3.41
620 897 6.317789 TGTCTTGCCTAAGAAAATTCTGTG 57.682 37.500 0.00 0.00 44.12 3.66
622 899 4.826733 TCTTGCCTAAGAAAATTCTGTGCA 59.173 37.500 9.22 9.22 39.89 4.57
623 900 4.503741 TGCCTAAGAAAATTCTGTGCAC 57.496 40.909 10.75 10.75 37.65 4.57
625 902 4.523943 TGCCTAAGAAAATTCTGTGCACAT 59.476 37.500 22.00 3.56 37.65 3.21
661 938 1.032014 ATTCTGTGCGGCTGTTGTTT 58.968 45.000 0.00 0.00 0.00 2.83
662 939 0.380378 TTCTGTGCGGCTGTTGTTTC 59.620 50.000 0.00 0.00 0.00 2.78
665 942 2.124109 TGCGGCTGTTGTTTCCCA 60.124 55.556 0.00 0.00 0.00 4.37
666 943 1.754621 TGCGGCTGTTGTTTCCCAA 60.755 52.632 0.00 0.00 0.00 4.12
667 944 1.323271 TGCGGCTGTTGTTTCCCAAA 61.323 50.000 0.00 0.00 34.07 3.28
701 978 6.212589 TCTGTGTGTCTGATATCTTACCCAAA 59.787 38.462 3.98 0.00 0.00 3.28
728 1005 1.071385 CTATGTGGCTGATGTCCTCCC 59.929 57.143 0.00 0.00 0.00 4.30
827 1111 2.809696 TCTGATAGAACGTGACGTGACA 59.190 45.455 12.85 7.05 39.99 3.58
933 1243 0.468214 CTGTATCCAGGCGAGGGAGA 60.468 60.000 0.00 0.00 37.96 3.71
934 1244 0.032515 TGTATCCAGGCGAGGGAGAA 60.033 55.000 0.00 0.00 37.96 2.87
935 1245 0.389757 GTATCCAGGCGAGGGAGAAC 59.610 60.000 0.00 0.30 37.96 3.01
938 1248 2.286523 CCAGGCGAGGGAGAACAGT 61.287 63.158 0.00 0.00 0.00 3.55
1310 1634 1.473965 GCCTGATGTGTCATGGATCGT 60.474 52.381 0.00 0.00 32.98 3.73
1465 1789 0.902048 CAGCACCCTGGAGTCAGAGA 60.902 60.000 0.00 0.00 43.49 3.10
1627 1968 2.672098 GCATAGGGAAGACTCTCCTCA 58.328 52.381 0.37 0.00 35.63 3.86
1663 2017 3.660501 ACACAACTGAGAGCGAATACA 57.339 42.857 0.00 0.00 0.00 2.29
1726 2080 6.672593 AGAGATGTTCTCAAGGAGATACTCT 58.327 40.000 7.24 6.51 45.73 3.24
1876 2230 6.961360 ATTTCCTACCCTAGCTTTTTATGC 57.039 37.500 0.00 0.00 0.00 3.14
1910 2266 9.803315 GTTGGTTTTTCTACTCATTTTTCTCTT 57.197 29.630 0.00 0.00 0.00 2.85
1940 2299 7.663905 GTCCACAACATATATACAGCCCATTAA 59.336 37.037 0.00 0.00 0.00 1.40
1941 2300 8.390143 TCCACAACATATATACAGCCCATTAAT 58.610 33.333 0.00 0.00 0.00 1.40
1957 2316 4.464008 CATTAATGGCCTCCACACTACAT 58.536 43.478 3.32 0.00 35.80 2.29
1958 2317 5.456042 CCATTAATGGCCTCCACACTACATA 60.456 44.000 21.32 0.00 41.75 2.29
1995 2368 7.594758 TGCATCTTTTACTTTAGCACATTCAAC 59.405 33.333 0.00 0.00 0.00 3.18
2023 2396 2.497273 CTCCCAGCCATTAAGGTTTTGG 59.503 50.000 0.00 0.00 40.61 3.28
2067 2440 4.584325 TGCATGGTTAAAGATTCCTATGCC 59.416 41.667 0.00 0.00 36.23 4.40
2166 2556 6.395629 TGTAAATGAGACAGTACTAAGCCAC 58.604 40.000 0.00 0.00 0.00 5.01
2251 2651 9.936759 GTATTCCCTTCATAATGGAAAACAAAA 57.063 29.630 0.00 0.00 41.24 2.44
2264 2664 4.364860 GAAAACAAAATACACAAGCCGGT 58.635 39.130 1.90 0.00 0.00 5.28
2272 2672 2.103537 ACACAAGCCGGTGGTATAAC 57.896 50.000 1.90 0.00 43.08 1.89
2274 2674 2.224572 ACACAAGCCGGTGGTATAACAA 60.225 45.455 1.90 0.00 43.08 2.83
2289 2689 9.595823 GTGGTATAACAAGCAGATTAGTAGAAA 57.404 33.333 0.00 0.00 0.00 2.52
2298 2698 7.352719 AGCAGATTAGTAGAAAAACGACTTG 57.647 36.000 0.00 0.00 36.06 3.16
2334 2736 6.485313 ACAAAACTCACGACATAATTCCTGAA 59.515 34.615 0.00 0.00 0.00 3.02
2376 2778 3.057734 GACTTCAAACACGGTGACTAGG 58.942 50.000 16.29 3.08 0.00 3.02
2454 2857 5.420104 AGGAATCCAATCAAAAGCAAGGTAG 59.580 40.000 0.61 0.00 0.00 3.18
2461 2864 7.178983 TCCAATCAAAAGCAAGGTAGAATCATT 59.821 33.333 0.00 0.00 0.00 2.57
2488 2891 6.284459 AGGAATAGAAAGTAATGCTTCTCCG 58.716 40.000 0.00 0.00 36.17 4.63
2506 2909 2.100197 CCGACTCTAGGTTCATGTGGA 58.900 52.381 0.00 0.00 0.00 4.02
2569 2972 0.329596 AGTGTCAGAATCCCTTGGGC 59.670 55.000 0.00 0.00 0.00 5.36
2624 3027 6.016860 TCTGAAACATGATTTGTGTGAAGAGG 60.017 38.462 0.00 0.00 38.99 3.69
3091 3517 0.806868 CTCGTCCGTAGCTACACCAA 59.193 55.000 23.21 2.79 0.00 3.67
3330 3762 2.351157 GCAGAGGTGAAGACATGCAAAC 60.351 50.000 0.00 0.00 33.92 2.93
3336 3768 2.618241 GTGAAGACATGCAAACCTCACA 59.382 45.455 11.98 3.03 0.00 3.58
3347 3779 5.009631 TGCAAACCTCACAGTATAATGCTT 58.990 37.500 0.00 0.00 32.74 3.91
3669 4110 1.007238 ACCTAAGCCTCAGAGGTGCTA 59.993 52.381 18.37 6.28 42.13 3.49
3885 4332 7.993183 TGTCAGAGAGAAGTAAATTGGAAACTT 59.007 33.333 0.00 0.00 36.20 2.66
4010 4493 1.262683 GACAGCAGCAACTCAAGACAC 59.737 52.381 0.00 0.00 0.00 3.67
4084 4567 3.431572 GCTCATTCACTCTCACTGAACAC 59.568 47.826 0.00 0.00 30.46 3.32
4174 4675 2.808543 CACTCAAGCTACAAGGGAACAC 59.191 50.000 0.00 0.00 0.00 3.32
4181 4682 3.523564 AGCTACAAGGGAACACCATATGT 59.476 43.478 1.24 0.00 46.42 2.29
4342 4853 0.034059 ACTCAACTGGACAAGCTCGG 59.966 55.000 0.00 0.00 0.00 4.63
4402 4917 2.355837 TGTCGTGGCAGAAGTCGC 60.356 61.111 0.00 0.00 0.00 5.19
4528 5055 2.105766 TCTTAAAGAGGTCGCCCTACC 58.894 52.381 0.00 0.00 42.86 3.18
4573 5100 1.494721 ACAGGAGTGGAAAGGAGCAAA 59.505 47.619 0.00 0.00 0.00 3.68
4635 5165 1.482593 CTAAGCCGATGGGAAGTGAGT 59.517 52.381 0.00 0.00 34.06 3.41
4679 5209 6.052360 TGCAGAAACAACTACTGATACAACA 58.948 36.000 0.00 0.00 34.07 3.33
4795 5335 5.044846 AGACTGGTAATTAAGTGATGGCCTT 60.045 40.000 3.32 0.00 0.00 4.35
4798 5338 4.704540 TGGTAATTAAGTGATGGCCTTGTG 59.295 41.667 3.32 0.00 0.00 3.33
4811 5351 3.181480 TGGCCTTGTGTTTTGCTTACTTC 60.181 43.478 3.32 0.00 0.00 3.01
4858 5398 9.190317 TGAGTTGTATATACTCTCTGTTCATGT 57.810 33.333 24.52 0.00 41.99 3.21
4875 5415 1.023502 TGTATGCATGTGCCATTCCG 58.976 50.000 10.16 0.00 41.18 4.30
5009 5549 1.080093 GCCGACGAGGTTGATGTCA 60.080 57.895 0.00 0.00 43.70 3.58
5016 5556 2.290641 ACGAGGTTGATGTCAAAAGTGC 59.709 45.455 0.00 0.00 37.63 4.40
5017 5557 2.290367 CGAGGTTGATGTCAAAAGTGCA 59.710 45.455 0.00 0.00 37.63 4.57
5056 5626 1.915078 GCCCTGTGCCATCACCTACT 61.915 60.000 0.00 0.00 42.46 2.57
5111 5683 8.599055 TTCAGTGATATGCATCTTCTTATGTC 57.401 34.615 0.19 0.00 31.93 3.06
5126 5698 6.828502 TCTTATGTCGCTTAATTGCTAGTG 57.171 37.500 0.00 0.00 0.00 2.74
5264 5844 7.480760 AATATTTTGCTAACACCAAGGATGT 57.519 32.000 0.00 0.00 0.00 3.06
5463 6043 3.006003 GGATGTAGCTAGTAGAACTGGGC 59.994 52.174 0.00 0.00 0.00 5.36
5473 6053 0.252103 AGAACTGGGCCGGAGTTAGA 60.252 55.000 21.81 0.00 33.71 2.10
5499 6079 9.474313 AGAGTGATATTCTTGAGATATACTCCC 57.526 37.037 0.00 0.00 44.34 4.30
5500 6080 9.474313 GAGTGATATTCTTGAGATATACTCCCT 57.526 37.037 0.00 0.00 44.34 4.20
5501 6081 9.474313 AGTGATATTCTTGAGATATACTCCCTC 57.526 37.037 0.00 0.00 44.34 4.30
5502 6082 9.474313 GTGATATTCTTGAGATATACTCCCTCT 57.526 37.037 0.00 0.00 44.34 3.69
5503 6083 9.473007 TGATATTCTTGAGATATACTCCCTCTG 57.527 37.037 0.00 0.00 44.34 3.35
5504 6084 9.474313 GATATTCTTGAGATATACTCCCTCTGT 57.526 37.037 0.00 0.00 44.34 3.41
5507 6087 9.661954 ATTCTTGAGATATACTCCCTCTGTAAA 57.338 33.333 0.00 0.00 44.34 2.01
5508 6088 8.698973 TCTTGAGATATACTCCCTCTGTAAAG 57.301 38.462 0.00 0.00 44.34 1.85
5509 6089 8.503573 TCTTGAGATATACTCCCTCTGTAAAGA 58.496 37.037 0.00 0.00 44.34 2.52
5510 6090 9.137459 CTTGAGATATACTCCCTCTGTAAAGAA 57.863 37.037 0.00 0.00 44.34 2.52
5511 6091 9.488762 TTGAGATATACTCCCTCTGTAAAGAAA 57.511 33.333 0.00 0.00 44.34 2.52
5512 6092 9.661954 TGAGATATACTCCCTCTGTAAAGAAAT 57.338 33.333 0.00 0.00 44.34 2.17
5520 6100 9.047947 ACTCCCTCTGTAAAGAAATATAACAGT 57.952 33.333 0.00 0.00 38.88 3.55
5521 6101 9.319143 CTCCCTCTGTAAAGAAATATAACAGTG 57.681 37.037 0.00 0.00 38.88 3.66
5522 6102 8.822805 TCCCTCTGTAAAGAAATATAACAGTGT 58.177 33.333 0.00 0.00 38.88 3.55
5523 6103 9.449719 CCCTCTGTAAAGAAATATAACAGTGTT 57.550 33.333 14.05 14.05 38.88 3.32
5551 6131 7.972832 AGATCACTAAAGTAGTAACCTAAACGC 59.027 37.037 0.00 0.00 37.23 4.84
5552 6132 7.219484 TCACTAAAGTAGTAACCTAAACGCT 57.781 36.000 0.00 0.00 37.23 5.07
5553 6133 7.308435 TCACTAAAGTAGTAACCTAAACGCTC 58.692 38.462 0.00 0.00 37.23 5.03
5554 6134 7.175641 TCACTAAAGTAGTAACCTAAACGCTCT 59.824 37.037 0.00 0.00 37.23 4.09
5555 6135 7.811713 CACTAAAGTAGTAACCTAAACGCTCTT 59.188 37.037 0.00 0.00 37.23 2.85
5556 6136 9.014297 ACTAAAGTAGTAACCTAAACGCTCTTA 57.986 33.333 0.00 0.00 37.23 2.10
5568 6148 9.028185 ACCTAAACGCTCTTATATTTCTTTACG 57.972 33.333 0.00 0.00 0.00 3.18
5569 6149 8.485591 CCTAAACGCTCTTATATTTCTTTACGG 58.514 37.037 0.00 0.00 0.00 4.02
5570 6150 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
5571 6151 8.658499 AAACGCTCTTATATTTCTTTACGGAT 57.342 30.769 0.00 0.00 0.00 4.18
5572 6152 7.639162 ACGCTCTTATATTTCTTTACGGATG 57.361 36.000 0.00 0.00 0.00 3.51
5573 6153 6.645415 ACGCTCTTATATTTCTTTACGGATGG 59.355 38.462 0.00 0.00 0.00 3.51
5574 6154 6.866770 CGCTCTTATATTTCTTTACGGATGGA 59.133 38.462 0.00 0.00 0.00 3.41
5575 6155 7.062371 CGCTCTTATATTTCTTTACGGATGGAG 59.938 40.741 0.00 0.00 0.00 3.86
5576 6156 7.873505 GCTCTTATATTTCTTTACGGATGGAGT 59.126 37.037 0.00 0.00 0.00 3.85
5585 6290 4.978083 TTACGGATGGAGTACAAGTCTC 57.022 45.455 0.00 0.00 0.00 3.36
5649 6407 3.282021 TCCAATGCTTCTCTAACATGGC 58.718 45.455 0.00 0.00 0.00 4.40
5651 6409 4.164030 TCCAATGCTTCTCTAACATGGCTA 59.836 41.667 0.00 0.00 0.00 3.93
5661 6419 8.484214 TTCTCTAACATGGCTATCTTCTGTAT 57.516 34.615 0.00 0.00 0.00 2.29
5664 6422 8.250143 TCTAACATGGCTATCTTCTGTATTGA 57.750 34.615 0.00 0.00 0.00 2.57
5757 9003 1.864711 CTTTCGCCAAAGAAGTCGACA 59.135 47.619 19.50 0.00 41.60 4.35
5858 9108 8.726870 TTTTAACTAGTTGTAGCTTCTGTTGT 57.273 30.769 18.56 0.00 0.00 3.32
5860 9110 6.846325 AACTAGTTGTAGCTTCTGTTGTTC 57.154 37.500 7.48 0.00 0.00 3.18
5862 9112 4.150897 AGTTGTAGCTTCTGTTGTTCCA 57.849 40.909 0.00 0.00 0.00 3.53
5874 9124 0.884704 TTGTTCCAACAGCTCGGCTC 60.885 55.000 0.00 0.00 40.50 4.70
5904 9154 4.832266 TGAGCCTTTGGACATTGTGTTATT 59.168 37.500 0.00 0.00 0.00 1.40
5967 9241 3.028130 TGCCAGACAAGTACGGATATGA 58.972 45.455 0.00 0.00 0.00 2.15
6001 9275 4.453819 CCTGAAGTTGATGAAGTGGTTCTC 59.546 45.833 0.00 0.00 33.38 2.87
6082 9370 5.918608 ACAGAGTCCACCATGTATGTTATC 58.081 41.667 0.00 0.00 0.00 1.75
6093 9381 9.249457 CACCATGTATGTTATCGGACATATATC 57.751 37.037 11.05 2.55 42.59 1.63
6118 9406 6.494842 TCGTCCAAATGCATAAATAGAAAGC 58.505 36.000 0.00 0.00 0.00 3.51
6121 9409 5.660417 TCCAAATGCATAAATAGAAAGCCCA 59.340 36.000 0.00 0.00 0.00 5.36
6128 9416 7.066142 TGCATAAATAGAAAGCCCATAAGGAA 58.934 34.615 0.00 0.00 38.24 3.36
6162 9450 4.635699 AACCTAAGTTCATTTCGGACCT 57.364 40.909 0.00 0.00 0.00 3.85
6163 9451 3.939066 ACCTAAGTTCATTTCGGACCTG 58.061 45.455 0.00 0.00 0.00 4.00
6164 9452 3.581332 ACCTAAGTTCATTTCGGACCTGA 59.419 43.478 0.00 0.00 0.00 3.86
6165 9453 4.041198 ACCTAAGTTCATTTCGGACCTGAA 59.959 41.667 0.00 0.00 0.00 3.02
6166 9454 4.392138 CCTAAGTTCATTTCGGACCTGAAC 59.608 45.833 17.74 17.74 45.75 3.18
6167 9455 2.779506 AGTTCATTTCGGACCTGAACC 58.220 47.619 20.10 9.14 46.28 3.62
6168 9456 2.372172 AGTTCATTTCGGACCTGAACCT 59.628 45.455 20.10 10.56 46.28 3.50
6169 9457 2.472695 TCATTTCGGACCTGAACCTG 57.527 50.000 0.00 0.00 0.00 4.00
6170 9458 1.974957 TCATTTCGGACCTGAACCTGA 59.025 47.619 0.00 0.00 0.00 3.86
6171 9459 2.370519 TCATTTCGGACCTGAACCTGAA 59.629 45.455 0.00 0.00 0.00 3.02
6172 9460 2.249844 TTTCGGACCTGAACCTGAAC 57.750 50.000 0.00 0.00 0.00 3.18
6173 9461 0.395312 TTCGGACCTGAACCTGAACC 59.605 55.000 0.00 0.00 0.00 3.62
6174 9462 0.471211 TCGGACCTGAACCTGAACCT 60.471 55.000 0.00 0.00 0.00 3.50
6175 9463 1.203087 TCGGACCTGAACCTGAACCTA 60.203 52.381 0.00 0.00 0.00 3.08
6176 9464 1.204941 CGGACCTGAACCTGAACCTAG 59.795 57.143 0.00 0.00 0.00 3.02
6212 9500 6.493115 TGGCTTTCTGATAAGTTCATTTGGAA 59.507 34.615 0.00 0.00 32.72 3.53
6224 9512 6.161911 GTTCATTTGGAACGAGTAACTACC 57.838 41.667 0.00 0.00 45.82 3.18
6225 9513 5.471556 TCATTTGGAACGAGTAACTACCA 57.528 39.130 0.00 0.00 0.00 3.25
6229 9517 3.489355 TGGAACGAGTAACTACCACAGA 58.511 45.455 0.00 0.00 0.00 3.41
6235 9523 4.705507 ACGAGTAACTACCACAGATCACAT 59.294 41.667 0.00 0.00 0.00 3.21
6244 9532 3.118261 ACCACAGATCACATGTATGTCCC 60.118 47.826 0.00 0.00 39.39 4.46
6259 9548 4.963276 ATGTCCCGTTTGATTGTACATG 57.037 40.909 0.00 0.00 0.00 3.21
6268 9557 6.359617 CCGTTTGATTGTACATGAAAACTGTC 59.640 38.462 18.12 0.00 0.00 3.51
6269 9558 6.909895 CGTTTGATTGTACATGAAAACTGTCA 59.090 34.615 18.12 1.41 0.00 3.58
6270 9559 7.591057 CGTTTGATTGTACATGAAAACTGTCAT 59.409 33.333 18.12 0.00 38.84 3.06
6271 9560 9.891828 GTTTGATTGTACATGAAAACTGTCATA 57.108 29.630 15.30 0.00 36.04 2.15
6274 9563 9.283768 TGATTGTACATGAAAACTGTCATAAGT 57.716 29.630 0.00 0.00 36.04 2.24
6278 9567 9.549078 TGTACATGAAAACTGTCATAAGTTACA 57.451 29.630 0.00 0.00 39.48 2.41
6281 9570 8.023128 ACATGAAAACTGTCATAAGTTACATGC 58.977 33.333 22.33 0.35 45.78 4.06
6282 9571 7.744087 TGAAAACTGTCATAAGTTACATGCT 57.256 32.000 0.00 0.00 39.48 3.79
6283 9572 8.165239 TGAAAACTGTCATAAGTTACATGCTT 57.835 30.769 0.00 0.00 39.48 3.91
6284 9573 9.278978 TGAAAACTGTCATAAGTTACATGCTTA 57.721 29.630 0.00 0.00 39.48 3.09
6287 9576 9.448438 AAACTGTCATAAGTTACATGCTTATCA 57.552 29.630 0.00 0.00 39.48 2.15
6288 9577 9.618890 AACTGTCATAAGTTACATGCTTATCAT 57.381 29.630 0.00 0.00 38.62 2.45
6289 9578 9.265901 ACTGTCATAAGTTACATGCTTATCATC 57.734 33.333 0.00 0.00 37.12 2.92
6290 9579 8.607441 TGTCATAAGTTACATGCTTATCATCC 57.393 34.615 0.00 0.00 37.12 3.51
6291 9580 8.432013 TGTCATAAGTTACATGCTTATCATCCT 58.568 33.333 0.00 0.00 37.12 3.24
6292 9581 9.277783 GTCATAAGTTACATGCTTATCATCCTT 57.722 33.333 0.00 0.00 37.12 3.36
6302 9591 9.590451 ACATGCTTATCATCCTTATTTTTGTTG 57.410 29.630 0.00 0.00 31.79 3.33
6303 9592 9.590451 CATGCTTATCATCCTTATTTTTGTTGT 57.410 29.630 0.00 0.00 31.79 3.32
6304 9593 8.984891 TGCTTATCATCCTTATTTTTGTTGTG 57.015 30.769 0.00 0.00 0.00 3.33
6321 9610 0.371645 GTGCTGATTGTGTAGCGAGC 59.628 55.000 0.00 0.00 42.74 5.03
6322 9611 0.740868 TGCTGATTGTGTAGCGAGCC 60.741 55.000 0.00 0.00 42.74 4.70
6323 9612 0.740868 GCTGATTGTGTAGCGAGCCA 60.741 55.000 0.00 0.00 0.00 4.75
6324 9613 1.945387 CTGATTGTGTAGCGAGCCAT 58.055 50.000 0.00 0.00 0.00 4.40
6325 9614 2.283298 CTGATTGTGTAGCGAGCCATT 58.717 47.619 0.00 0.00 0.00 3.16
6326 9615 2.009051 TGATTGTGTAGCGAGCCATTG 58.991 47.619 0.00 0.00 0.00 2.82
6327 9616 1.331756 GATTGTGTAGCGAGCCATTGG 59.668 52.381 0.00 0.00 0.00 3.16
6334 9623 1.212751 GCGAGCCATTGGTTTCCAC 59.787 57.895 4.26 0.00 30.78 4.02
6337 9626 0.804989 GAGCCATTGGTTTCCACGAG 59.195 55.000 4.26 0.00 30.78 4.18
6338 9627 0.110486 AGCCATTGGTTTCCACGAGT 59.890 50.000 4.26 0.00 30.78 4.18
6396 9686 4.762289 AACTTGATGATGTACTCCCTCC 57.238 45.455 0.00 0.00 0.00 4.30
6397 9687 2.695666 ACTTGATGATGTACTCCCTCCG 59.304 50.000 0.00 0.00 0.00 4.63
6398 9688 2.454336 TGATGATGTACTCCCTCCGT 57.546 50.000 0.00 0.00 0.00 4.69
6399 9689 2.747177 TGATGATGTACTCCCTCCGTT 58.253 47.619 0.00 0.00 0.00 4.44
6400 9690 2.693591 TGATGATGTACTCCCTCCGTTC 59.306 50.000 0.00 0.00 0.00 3.95
6401 9691 1.481871 TGATGTACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
6402 9692 0.384669 GATGTACTCCCTCCGTTCCG 59.615 60.000 0.00 0.00 0.00 4.30
6403 9693 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
6404 9694 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
6405 9695 0.890683 GTACTCCCTCCGTTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
6406 9696 1.479730 GTACTCCCTCCGTTCCGAAAT 59.520 52.381 0.00 0.00 0.00 2.17
6407 9697 1.856629 ACTCCCTCCGTTCCGAAATA 58.143 50.000 0.00 0.00 0.00 1.40
6408 9698 1.755380 ACTCCCTCCGTTCCGAAATAG 59.245 52.381 0.00 0.00 0.00 1.73
6409 9699 2.029623 CTCCCTCCGTTCCGAAATAGA 58.970 52.381 0.00 0.00 0.00 1.98
6410 9700 2.628657 CTCCCTCCGTTCCGAAATAGAT 59.371 50.000 0.00 0.00 0.00 1.98
6411 9701 2.364324 TCCCTCCGTTCCGAAATAGATG 59.636 50.000 0.00 0.00 0.00 2.90
6412 9702 2.364324 CCCTCCGTTCCGAAATAGATGA 59.636 50.000 0.00 0.00 0.00 2.92
6413 9703 3.381949 CCTCCGTTCCGAAATAGATGAC 58.618 50.000 0.00 0.00 0.00 3.06
6414 9704 3.068307 CCTCCGTTCCGAAATAGATGACT 59.932 47.826 0.00 0.00 0.00 3.41
6415 9705 4.291783 CTCCGTTCCGAAATAGATGACTC 58.708 47.826 0.00 0.00 0.00 3.36
6416 9706 3.697542 TCCGTTCCGAAATAGATGACTCA 59.302 43.478 0.00 0.00 0.00 3.41
6417 9707 4.158949 TCCGTTCCGAAATAGATGACTCAA 59.841 41.667 0.00 0.00 0.00 3.02
6418 9708 4.267928 CCGTTCCGAAATAGATGACTCAAC 59.732 45.833 0.00 0.00 0.00 3.18
6419 9709 5.103000 CGTTCCGAAATAGATGACTCAACT 58.897 41.667 0.00 0.00 0.00 3.16
6420 9710 5.577164 CGTTCCGAAATAGATGACTCAACTT 59.423 40.000 0.00 0.00 0.00 2.66
6421 9711 6.090898 CGTTCCGAAATAGATGACTCAACTTT 59.909 38.462 0.00 0.00 0.00 2.66
6422 9712 6.968131 TCCGAAATAGATGACTCAACTTTG 57.032 37.500 0.00 0.00 0.00 2.77
6423 9713 6.464222 TCCGAAATAGATGACTCAACTTTGT 58.536 36.000 0.00 0.00 0.00 2.83
6424 9714 7.608153 TCCGAAATAGATGACTCAACTTTGTA 58.392 34.615 0.00 0.00 0.00 2.41
6425 9715 7.544566 TCCGAAATAGATGACTCAACTTTGTAC 59.455 37.037 0.00 0.00 0.00 2.90
6426 9716 7.545965 CCGAAATAGATGACTCAACTTTGTACT 59.454 37.037 0.00 0.00 0.00 2.73
6427 9717 9.569167 CGAAATAGATGACTCAACTTTGTACTA 57.431 33.333 0.00 0.00 0.00 1.82
6459 9749 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
6460 9750 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
6461 9751 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
6462 9752 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
6463 9753 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
6464 9754 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
6465 9755 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
6466 9756 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
6467 9757 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
6468 9758 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
6469 9759 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
6485 9775 5.901276 ACGGAGGGAGTATGTCCTAAATTAA 59.099 40.000 0.00 0.00 46.06 1.40
6498 9788 4.941263 TCCTAAATTAAGCGTGCTGATTGT 59.059 37.500 0.00 0.00 0.00 2.71
6502 9792 0.516877 TAAGCGTGCTGATTGTGTGC 59.483 50.000 0.00 0.00 0.00 4.57
6503 9793 1.446516 AAGCGTGCTGATTGTGTGCA 61.447 50.000 0.00 0.00 0.00 4.57
6511 9801 4.074259 TGCTGATTGTGTGCACTAATCTT 58.926 39.130 29.87 11.50 33.78 2.40
6513 9803 5.122239 TGCTGATTGTGTGCACTAATCTTAC 59.878 40.000 29.87 23.19 33.78 2.34
6520 9822 5.411361 TGTGTGCACTAATCTTACCATGAAC 59.589 40.000 19.41 2.10 0.00 3.18
6524 9826 4.026804 GCACTAATCTTACCATGAACGTCG 60.027 45.833 0.00 0.00 0.00 5.12
6539 9841 4.214545 TGAACGTCGCATTTTACTCCAAAT 59.785 37.500 0.00 0.00 0.00 2.32
6572 9878 9.868160 TTTGGTTAAAACAAATAAATGGGGATT 57.132 25.926 0.00 0.00 33.26 3.01
6574 9880 9.945904 TGGTTAAAACAAATAAATGGGGATTAC 57.054 29.630 0.00 0.00 0.00 1.89
6575 9881 9.945904 GGTTAAAACAAATAAATGGGGATTACA 57.054 29.630 0.00 0.00 0.00 2.41
6580 9886 7.562454 ACAAATAAATGGGGATTACAGTACG 57.438 36.000 0.00 0.00 0.00 3.67
6581 9887 6.038936 ACAAATAAATGGGGATTACAGTACGC 59.961 38.462 0.00 0.00 0.00 4.42
6582 9888 3.637911 AAATGGGGATTACAGTACGCA 57.362 42.857 0.00 0.00 0.00 5.24
6583 9889 3.857157 AATGGGGATTACAGTACGCAT 57.143 42.857 0.00 0.00 38.00 4.73
6584 9890 2.613026 TGGGGATTACAGTACGCATG 57.387 50.000 0.00 0.00 0.00 4.06
6585 9891 1.140052 TGGGGATTACAGTACGCATGG 59.860 52.381 0.00 0.00 0.00 3.66
6586 9892 1.542547 GGGGATTACAGTACGCATGGG 60.543 57.143 8.44 8.44 0.00 4.00
6587 9893 1.414919 GGGATTACAGTACGCATGGGA 59.585 52.381 17.76 0.00 0.00 4.37
6592 9898 5.277828 GGATTACAGTACGCATGGGAATTTC 60.278 44.000 17.76 2.12 0.00 2.17
6624 9930 3.133901 GGTTTGTTCCCCTGTTTGACAAT 59.866 43.478 0.00 0.00 31.15 2.71
6640 9946 2.236893 GACAATGGGGCATGGTTTGATT 59.763 45.455 0.00 0.00 26.66 2.57
6651 9957 7.938490 GGGGCATGGTTTGATTGATTTAATTAT 59.062 33.333 0.00 0.00 0.00 1.28
6727 10034 2.903135 CCTCCATTCTCCTCCCATCTAC 59.097 54.545 0.00 0.00 0.00 2.59
6728 10035 2.560542 CTCCATTCTCCTCCCATCTACG 59.439 54.545 0.00 0.00 0.00 3.51
6730 10037 3.139584 TCCATTCTCCTCCCATCTACGTA 59.860 47.826 0.00 0.00 0.00 3.57
6731 10038 4.090090 CCATTCTCCTCCCATCTACGTAT 58.910 47.826 0.00 0.00 0.00 3.06
6734 10041 5.531122 TTCTCCTCCCATCTACGTATTTG 57.469 43.478 0.00 0.00 0.00 2.32
6735 10042 3.321111 TCTCCTCCCATCTACGTATTTGC 59.679 47.826 0.00 0.00 0.00 3.68
6736 10043 3.305720 TCCTCCCATCTACGTATTTGCT 58.694 45.455 0.00 0.00 0.00 3.91
6739 10048 4.273480 CCTCCCATCTACGTATTTGCTTTG 59.727 45.833 0.00 0.00 0.00 2.77
6752 10061 1.970114 GCTTTGCTGCTCCTGCTCA 60.970 57.895 0.00 0.00 40.48 4.26
6768 10077 2.172082 TGCTCAGGAATCAGGAATCAGG 59.828 50.000 0.00 0.00 0.00 3.86
6769 10078 2.437281 GCTCAGGAATCAGGAATCAGGA 59.563 50.000 0.00 0.00 0.00 3.86
6770 10079 3.494749 GCTCAGGAATCAGGAATCAGGAG 60.495 52.174 0.00 0.00 0.00 3.69
6771 10080 3.966006 CTCAGGAATCAGGAATCAGGAGA 59.034 47.826 0.00 0.00 0.00 3.71
6772 10081 3.708631 TCAGGAATCAGGAATCAGGAGAC 59.291 47.826 0.00 0.00 0.00 3.36
6773 10082 2.697751 AGGAATCAGGAATCAGGAGACG 59.302 50.000 0.00 0.00 0.00 4.18
6774 10083 2.695666 GGAATCAGGAATCAGGAGACGA 59.304 50.000 0.00 0.00 0.00 4.20
6775 10084 3.133003 GGAATCAGGAATCAGGAGACGAA 59.867 47.826 0.00 0.00 0.00 3.85
6776 10085 3.810310 ATCAGGAATCAGGAGACGAAC 57.190 47.619 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.194861 CACAAGAACGTTGTCCTCTCAA 58.805 45.455 5.00 0.00 0.00 3.02
32 33 1.082756 GAGGCGCACAAGAACGTTG 60.083 57.895 10.83 0.00 0.00 4.10
33 34 1.498865 CTGAGGCGCACAAGAACGTT 61.499 55.000 10.83 0.00 0.00 3.99
128 129 4.650131 AGTGGTAATTGAGTAGAGGGCTAC 59.350 45.833 0.00 0.00 45.92 3.58
131 132 3.707102 AGAGTGGTAATTGAGTAGAGGGC 59.293 47.826 0.00 0.00 0.00 5.19
172 173 2.118404 GTGTGTGTGTGTGTGGGGG 61.118 63.158 0.00 0.00 0.00 5.40
173 174 2.118404 GGTGTGTGTGTGTGTGGGG 61.118 63.158 0.00 0.00 0.00 4.96
174 175 0.962855 TTGGTGTGTGTGTGTGTGGG 60.963 55.000 0.00 0.00 0.00 4.61
175 176 0.884514 TTTGGTGTGTGTGTGTGTGG 59.115 50.000 0.00 0.00 0.00 4.17
176 177 1.809547 TCTTTGGTGTGTGTGTGTGTG 59.190 47.619 0.00 0.00 0.00 3.82
177 178 2.192664 TCTTTGGTGTGTGTGTGTGT 57.807 45.000 0.00 0.00 0.00 3.72
178 179 3.567576 TTTCTTTGGTGTGTGTGTGTG 57.432 42.857 0.00 0.00 0.00 3.82
179 180 3.319405 TGTTTTCTTTGGTGTGTGTGTGT 59.681 39.130 0.00 0.00 0.00 3.72
180 181 3.906998 TGTTTTCTTTGGTGTGTGTGTG 58.093 40.909 0.00 0.00 0.00 3.82
181 182 3.572255 ACTGTTTTCTTTGGTGTGTGTGT 59.428 39.130 0.00 0.00 0.00 3.72
182 183 3.919804 CACTGTTTTCTTTGGTGTGTGTG 59.080 43.478 0.00 0.00 0.00 3.82
183 184 3.572255 ACACTGTTTTCTTTGGTGTGTGT 59.428 39.130 0.00 0.00 39.27 3.72
184 185 4.173036 ACACTGTTTTCTTTGGTGTGTG 57.827 40.909 0.00 0.00 39.27 3.82
246 522 1.203237 TCTGTTGCAGGCTGCCTATA 58.797 50.000 34.58 19.95 44.23 1.31
261 537 1.681166 GCTCAACATGGCCTCATCTGT 60.681 52.381 3.32 0.00 0.00 3.41
316 592 4.200092 GTTTGAGGGTCCCAATAGTCATC 58.800 47.826 11.55 0.00 0.00 2.92
344 621 1.002430 ACGATCAAAGGCAGAAGCTGA 59.998 47.619 0.00 0.00 41.70 4.26
345 622 1.446907 ACGATCAAAGGCAGAAGCTG 58.553 50.000 0.00 0.00 41.70 4.24
369 646 2.166459 CCTCAGCATCTGTCCGTTTAGA 59.834 50.000 0.00 0.00 32.61 2.10
422 699 5.912892 TCTCTGCATATTTTCGACCACATA 58.087 37.500 0.00 0.00 0.00 2.29
487 764 1.288752 CAACCGTGGCCATCCAAAC 59.711 57.895 9.72 0.00 45.53 2.93
562 839 7.759433 ACATAAATTAATGGAAGAAACAAGGCG 59.241 33.333 0.00 0.00 0.00 5.52
590 867 4.890158 TTCTTAGGCAAGACATCACAGA 57.110 40.909 0.00 0.00 40.54 3.41
593 870 7.025963 CAGAATTTTCTTAGGCAAGACATCAC 58.974 38.462 0.00 0.00 40.54 3.06
594 871 6.716628 ACAGAATTTTCTTAGGCAAGACATCA 59.283 34.615 0.00 0.00 40.54 3.07
609 886 6.753744 GGGAAGATAATGTGCACAGAATTTTC 59.246 38.462 25.84 25.13 0.00 2.29
615 892 5.425217 TCTTAGGGAAGATAATGTGCACAGA 59.575 40.000 25.84 15.89 36.75 3.41
616 893 5.674525 TCTTAGGGAAGATAATGTGCACAG 58.325 41.667 25.84 6.16 36.75 3.66
617 894 5.692115 TCTTAGGGAAGATAATGTGCACA 57.308 39.130 24.08 24.08 36.75 4.57
618 895 7.391148 TTTTCTTAGGGAAGATAATGTGCAC 57.609 36.000 10.75 10.75 41.40 4.57
619 896 8.593945 AATTTTCTTAGGGAAGATAATGTGCA 57.406 30.769 4.75 0.00 40.41 4.57
620 897 8.907885 AGAATTTTCTTAGGGAAGATAATGTGC 58.092 33.333 4.75 0.00 40.41 4.57
622 899 9.981460 ACAGAATTTTCTTAGGGAAGATAATGT 57.019 29.630 4.75 0.00 40.41 2.71
625 902 7.065803 CGCACAGAATTTTCTTAGGGAAGATAA 59.934 37.037 0.00 0.00 41.40 1.75
666 943 9.683069 GATATCAGACACACAGATTTTGTTTTT 57.317 29.630 0.00 0.00 38.16 1.94
667 944 9.071276 AGATATCAGACACACAGATTTTGTTTT 57.929 29.630 5.32 0.00 38.16 2.43
671 948 8.607459 GGTAAGATATCAGACACACAGATTTTG 58.393 37.037 5.32 0.00 0.00 2.44
676 953 5.269189 TGGGTAAGATATCAGACACACAGA 58.731 41.667 5.32 0.00 0.00 3.41
677 954 5.598416 TGGGTAAGATATCAGACACACAG 57.402 43.478 5.32 0.00 0.00 3.66
679 956 7.681939 TTTTTGGGTAAGATATCAGACACAC 57.318 36.000 10.57 2.37 0.00 3.82
701 978 5.954150 AGGACATCAGCCACATAGAATTTTT 59.046 36.000 0.00 0.00 0.00 1.94
721 998 6.372937 CACAGATTCTTTTTCTTAGGGAGGAC 59.627 42.308 0.00 0.00 0.00 3.85
728 1005 8.997323 ACATCAGACACAGATTCTTTTTCTTAG 58.003 33.333 0.00 0.00 0.00 2.18
812 1096 0.458669 AACCTGTCACGTCACGTTCT 59.541 50.000 0.00 0.00 38.32 3.01
813 1097 2.124011 TAACCTGTCACGTCACGTTC 57.876 50.000 0.00 0.00 38.32 3.95
816 1100 1.842720 TGTTAACCTGTCACGTCACG 58.157 50.000 2.48 0.00 0.00 4.35
862 1155 0.465460 TGGCCGCATAAATCCAGGAC 60.465 55.000 0.00 0.00 0.00 3.85
933 1243 6.265196 TGATACTGAATTTTGCCTTCACTGTT 59.735 34.615 0.00 0.00 0.00 3.16
934 1244 5.769662 TGATACTGAATTTTGCCTTCACTGT 59.230 36.000 0.00 0.00 0.00 3.55
935 1245 6.072286 ACTGATACTGAATTTTGCCTTCACTG 60.072 38.462 0.00 0.00 0.00 3.66
938 1248 7.994425 TTACTGATACTGAATTTTGCCTTCA 57.006 32.000 0.00 0.00 0.00 3.02
1101 1423 2.236644 ACTGATGTCATGCTTCAGCTCT 59.763 45.455 21.76 9.19 47.00 4.09
1192 1516 1.378514 CCTTATGCACGGGGTTGCT 60.379 57.895 0.00 0.00 43.41 3.91
1310 1634 6.128391 CGTCTTCATCCGGTGAAATTTCTTAA 60.128 38.462 18.64 0.00 45.74 1.85
1365 1689 1.835494 TCTTCCTGAGACGACGGATT 58.165 50.000 0.00 0.00 0.00 3.01
1465 1789 1.066858 GTCCGTGTCATCAGATGGTGT 60.067 52.381 10.67 0.00 0.00 4.16
1726 2080 2.747396 GAATGCATTCCAAGTTGCCA 57.253 45.000 26.03 0.00 38.08 4.92
1818 2172 0.768221 TGGTCCCAAGGCACTCTCTT 60.768 55.000 0.00 0.00 38.49 2.85
1857 2211 3.139077 CGGCATAAAAAGCTAGGGTAGG 58.861 50.000 0.00 0.00 0.00 3.18
1876 2230 5.065474 TGAGTAGAAAAACCAACAGAAACGG 59.935 40.000 0.00 0.00 0.00 4.44
1910 2266 5.221641 GGCTGTATATATGTTGTGGACTCCA 60.222 44.000 0.00 0.00 0.00 3.86
1940 2299 1.417890 GCTATGTAGTGTGGAGGCCAT 59.582 52.381 5.01 0.00 35.28 4.40
1941 2300 0.830648 GCTATGTAGTGTGGAGGCCA 59.169 55.000 5.01 0.00 0.00 5.36
1995 2368 3.887716 CCTTAATGGCTGGGAGAATCAAG 59.112 47.826 0.00 0.00 36.25 3.02
2251 2651 3.198200 TGTTATACCACCGGCTTGTGTAT 59.802 43.478 0.00 6.42 34.35 2.29
2272 2672 7.352719 AGTCGTTTTTCTACTAATCTGCTTG 57.647 36.000 0.00 0.00 0.00 4.01
2274 2674 7.152645 TCAAGTCGTTTTTCTACTAATCTGCT 58.847 34.615 0.00 0.00 0.00 4.24
2289 2689 0.884704 AGCCGTGCATCAAGTCGTTT 60.885 50.000 0.00 0.00 0.00 3.60
2298 2698 1.804151 TGAGTTTTGTAGCCGTGCATC 59.196 47.619 0.00 0.00 0.00 3.91
2334 2736 5.479375 AGTCCTTGATTTGCAATTGATCTGT 59.521 36.000 10.34 0.00 35.59 3.41
2422 2825 6.127842 GCTTTTGATTGGATTCCTACGGTAAA 60.128 38.462 3.95 0.00 0.00 2.01
2423 2826 5.355910 GCTTTTGATTGGATTCCTACGGTAA 59.644 40.000 3.95 0.00 0.00 2.85
2461 2864 9.614792 GGAGAAGCATTACTTTCTATTCCTTTA 57.385 33.333 0.00 0.00 39.29 1.85
2488 2891 4.020543 AGTCTCCACATGAACCTAGAGTC 58.979 47.826 0.00 0.00 0.00 3.36
2506 2909 2.022934 GGATCCTCGAACCGTTAGTCT 58.977 52.381 3.84 0.00 0.00 3.24
2569 2972 4.726416 CATTCAGACAAGGAAATTGGTCG 58.274 43.478 0.00 0.00 43.68 4.79
2574 2977 4.222145 AGCATGCATTCAGACAAGGAAATT 59.778 37.500 21.98 0.00 0.00 1.82
2585 2988 5.494632 TGTTTCAGATAGCATGCATTCAG 57.505 39.130 21.98 12.63 0.00 3.02
2624 3027 7.913674 AAGAAGTCAGAATAGAACACATTCC 57.086 36.000 0.00 0.00 35.18 3.01
2669 3072 5.589855 TCTCCGCATGTCATCAATTACAATT 59.410 36.000 0.00 0.00 0.00 2.32
3091 3517 5.994250 TCTTGATATCTTGCTTGCTTAGGT 58.006 37.500 3.98 0.00 0.00 3.08
3330 3762 6.108687 TGAACTCAAGCATTATACTGTGAGG 58.891 40.000 12.45 0.52 37.42 3.86
3336 3768 6.825213 TGCAGAATGAACTCAAGCATTATACT 59.175 34.615 0.00 0.00 39.69 2.12
3669 4110 9.490379 CTGTTTTGGAATAACTGTAACTCTAGT 57.510 33.333 0.00 0.00 0.00 2.57
3885 4332 2.156098 GTCCACAACAAATCCGGCTAA 58.844 47.619 0.00 0.00 0.00 3.09
4010 4493 3.245052 ACCCCTTGATTGACTTTGAGAGG 60.245 47.826 0.00 0.00 0.00 3.69
4084 4567 3.379372 GTCTGGACACCATTCATCATTGG 59.621 47.826 0.00 0.00 39.02 3.16
4174 4675 2.632028 AGAGGCAGCTGACTACATATGG 59.368 50.000 25.52 0.00 30.09 2.74
4181 4682 1.694150 ACAAACAGAGGCAGCTGACTA 59.306 47.619 25.52 0.00 39.20 2.59
4393 4904 1.373497 AGCTCGGTTGCGACTTCTG 60.373 57.895 3.59 0.00 38.13 3.02
4402 4917 3.334691 TCTTGTATTTCCAGCTCGGTTG 58.665 45.455 2.68 0.00 35.57 3.77
4528 5055 3.749609 TGTTTCATCACTCACTGCATCAG 59.250 43.478 0.00 0.00 37.52 2.90
4573 5100 0.549469 ACGTCTGGGGTGGTTCTTTT 59.451 50.000 0.00 0.00 0.00 2.27
4635 5165 1.490490 AGGGATAATTTCCGCAGCAGA 59.510 47.619 0.00 0.00 46.52 4.26
4679 5209 2.232452 CTCCACATCAACCTCTTCGACT 59.768 50.000 0.00 0.00 0.00 4.18
4795 5335 5.814764 TTAACCGAAGTAAGCAAAACACA 57.185 34.783 0.00 0.00 0.00 3.72
4798 5338 7.114388 CCAAGAATTAACCGAAGTAAGCAAAAC 59.886 37.037 0.00 0.00 0.00 2.43
4811 5351 2.510613 ACACACCCCAAGAATTAACCG 58.489 47.619 0.00 0.00 0.00 4.44
5056 5626 3.264193 ACTCACCAGTAGAAATGGCATCA 59.736 43.478 0.00 0.00 41.87 3.07
5111 5683 4.340894 TCAAAGCACTAGCAATTAAGCG 57.659 40.909 0.00 0.00 45.49 4.68
5153 5725 7.652727 TGTGTGCATGAAGAGAGAGTATATAC 58.347 38.462 4.60 4.60 0.00 1.47
5463 6043 6.263392 TCAAGAATATCACTCTCTAACTCCGG 59.737 42.308 0.00 0.00 0.00 5.14
5473 6053 9.474313 GGGAGTATATCTCAAGAATATCACTCT 57.526 37.037 0.00 0.00 44.40 3.24
5494 6074 9.047947 ACTGTTATATTTCTTTACAGAGGGAGT 57.952 33.333 0.00 0.00 38.74 3.85
5495 6075 9.319143 CACTGTTATATTTCTTTACAGAGGGAG 57.681 37.037 0.00 0.00 38.74 4.30
5496 6076 8.822805 ACACTGTTATATTTCTTTACAGAGGGA 58.177 33.333 0.00 0.00 38.74 4.20
5497 6077 9.449719 AACACTGTTATATTTCTTTACAGAGGG 57.550 33.333 0.00 0.00 38.74 4.30
5525 6105 7.972832 GCGTTTAGGTTACTACTTTAGTGATCT 59.027 37.037 0.00 0.00 38.94 2.75
5526 6106 7.972832 AGCGTTTAGGTTACTACTTTAGTGATC 59.027 37.037 0.00 0.00 39.81 2.92
5527 6107 7.834803 AGCGTTTAGGTTACTACTTTAGTGAT 58.165 34.615 0.00 0.00 39.81 3.06
5528 6108 7.175641 AGAGCGTTTAGGTTACTACTTTAGTGA 59.824 37.037 0.00 0.00 39.81 3.41
5529 6109 7.311408 AGAGCGTTTAGGTTACTACTTTAGTG 58.689 38.462 0.00 0.00 39.81 2.74
5530 6110 7.459795 AGAGCGTTTAGGTTACTACTTTAGT 57.540 36.000 0.00 0.00 42.68 2.24
5542 6122 9.028185 CGTAAAGAAATATAAGAGCGTTTAGGT 57.972 33.333 0.00 0.00 0.00 3.08
5543 6123 8.485591 CCGTAAAGAAATATAAGAGCGTTTAGG 58.514 37.037 0.00 0.00 0.00 2.69
5544 6124 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
5545 6125 9.754382 ATCCGTAAAGAAATATAAGAGCGTTTA 57.246 29.630 0.00 0.00 0.00 2.01
5546 6126 8.548721 CATCCGTAAAGAAATATAAGAGCGTTT 58.451 33.333 0.00 0.00 0.00 3.60
5547 6127 7.170998 CCATCCGTAAAGAAATATAAGAGCGTT 59.829 37.037 0.00 0.00 0.00 4.84
5548 6128 6.645415 CCATCCGTAAAGAAATATAAGAGCGT 59.355 38.462 0.00 0.00 0.00 5.07
5549 6129 6.866770 TCCATCCGTAAAGAAATATAAGAGCG 59.133 38.462 0.00 0.00 0.00 5.03
5550 6130 7.873505 ACTCCATCCGTAAAGAAATATAAGAGC 59.126 37.037 0.00 0.00 0.00 4.09
5553 6133 9.976511 TGTACTCCATCCGTAAAGAAATATAAG 57.023 33.333 0.00 0.00 0.00 1.73
5555 6135 9.976511 CTTGTACTCCATCCGTAAAGAAATATA 57.023 33.333 0.00 0.00 0.00 0.86
5556 6136 8.483758 ACTTGTACTCCATCCGTAAAGAAATAT 58.516 33.333 0.00 0.00 0.00 1.28
5557 6137 7.844009 ACTTGTACTCCATCCGTAAAGAAATA 58.156 34.615 0.00 0.00 0.00 1.40
5558 6138 6.708285 ACTTGTACTCCATCCGTAAAGAAAT 58.292 36.000 0.00 0.00 0.00 2.17
5559 6139 6.014840 AGACTTGTACTCCATCCGTAAAGAAA 60.015 38.462 0.00 0.00 0.00 2.52
5560 6140 5.479375 AGACTTGTACTCCATCCGTAAAGAA 59.521 40.000 0.00 0.00 0.00 2.52
5561 6141 5.014858 AGACTTGTACTCCATCCGTAAAGA 58.985 41.667 0.00 0.00 0.00 2.52
5562 6142 5.326200 AGACTTGTACTCCATCCGTAAAG 57.674 43.478 0.00 0.00 0.00 1.85
5563 6143 4.142534 CGAGACTTGTACTCCATCCGTAAA 60.143 45.833 0.00 0.00 0.00 2.01
5564 6144 3.376234 CGAGACTTGTACTCCATCCGTAA 59.624 47.826 0.00 0.00 0.00 3.18
5565 6145 2.941064 CGAGACTTGTACTCCATCCGTA 59.059 50.000 0.00 0.00 0.00 4.02
5566 6146 1.743958 CGAGACTTGTACTCCATCCGT 59.256 52.381 0.00 0.00 0.00 4.69
5567 6147 1.743958 ACGAGACTTGTACTCCATCCG 59.256 52.381 0.00 0.00 0.00 4.18
5568 6148 4.261656 CCATACGAGACTTGTACTCCATCC 60.262 50.000 4.61 0.00 0.00 3.51
5569 6149 4.338682 ACCATACGAGACTTGTACTCCATC 59.661 45.833 4.61 0.00 0.00 3.51
5570 6150 4.279145 ACCATACGAGACTTGTACTCCAT 58.721 43.478 4.61 0.00 0.00 3.41
5571 6151 3.693807 ACCATACGAGACTTGTACTCCA 58.306 45.455 4.61 0.00 0.00 3.86
5572 6152 4.715527 AACCATACGAGACTTGTACTCC 57.284 45.455 4.61 0.00 0.00 3.85
5573 6153 6.643770 TGAAAAACCATACGAGACTTGTACTC 59.356 38.462 4.61 0.00 0.00 2.59
5574 6154 6.518493 TGAAAAACCATACGAGACTTGTACT 58.482 36.000 4.61 0.00 0.00 2.73
5575 6155 6.774354 TGAAAAACCATACGAGACTTGTAC 57.226 37.500 4.61 0.00 0.00 2.90
5576 6156 6.987992 AGTTGAAAAACCATACGAGACTTGTA 59.012 34.615 4.99 4.99 0.00 2.41
5585 6290 6.295039 ACAGTACAGTTGAAAAACCATACG 57.705 37.500 0.00 0.00 0.00 3.06
5651 6409 8.868522 TGGTTCTGAAAATCAATACAGAAGAT 57.131 30.769 0.00 0.00 45.60 2.40
5661 6419 3.575805 AGGCCTTGGTTCTGAAAATCAA 58.424 40.909 0.00 0.00 0.00 2.57
5664 6422 3.081804 CGTAGGCCTTGGTTCTGAAAAT 58.918 45.455 12.58 0.00 0.00 1.82
5704 6462 1.078759 CCAGCGATGACAACCTCGTC 61.079 60.000 0.06 0.00 36.74 4.20
5757 9003 1.077265 CAAGGCACCAACATCCCCT 59.923 57.895 0.00 0.00 0.00 4.79
5829 9076 7.661847 ACAGAAGCTACAACTAGTTAAAATGCT 59.338 33.333 8.04 10.64 0.00 3.79
5832 9082 9.338622 ACAACAGAAGCTACAACTAGTTAAAAT 57.661 29.630 8.04 0.00 0.00 1.82
5858 9108 1.188219 AGAGAGCCGAGCTGTTGGAA 61.188 55.000 2.98 0.00 39.88 3.53
5860 9110 1.018226 CAAGAGAGCCGAGCTGTTGG 61.018 60.000 2.98 0.00 39.88 3.77
5862 9112 0.394565 AACAAGAGAGCCGAGCTGTT 59.605 50.000 2.98 0.00 39.88 3.16
5904 9154 3.249799 CACCATTAGCGCATCCGAAATTA 59.750 43.478 11.47 0.00 36.29 1.40
6001 9275 5.375417 TGTGCATTCAGGACAAACTTATG 57.625 39.130 0.00 0.00 46.21 1.90
6093 9381 6.634436 GCTTTCTATTTATGCATTTGGACGAG 59.366 38.462 3.54 1.07 0.00 4.18
6118 9406 5.076873 TCAGGTTCTTTTGTTCCTTATGGG 58.923 41.667 0.00 0.00 0.00 4.00
6121 9409 6.373759 AGGTTCAGGTTCTTTTGTTCCTTAT 58.626 36.000 0.00 0.00 0.00 1.73
6156 9444 1.204941 CTAGGTTCAGGTTCAGGTCCG 59.795 57.143 0.00 0.00 0.00 4.79
6170 9458 2.110011 AGCCACCAAATGAACCTAGGTT 59.890 45.455 27.43 27.43 41.54 3.50
6171 9459 1.710809 AGCCACCAAATGAACCTAGGT 59.289 47.619 9.21 9.21 0.00 3.08
6172 9460 2.514458 AGCCACCAAATGAACCTAGG 57.486 50.000 7.41 7.41 0.00 3.02
6173 9461 4.082125 AGAAAGCCACCAAATGAACCTAG 58.918 43.478 0.00 0.00 0.00 3.02
6174 9462 3.826157 CAGAAAGCCACCAAATGAACCTA 59.174 43.478 0.00 0.00 0.00 3.08
6175 9463 2.629617 CAGAAAGCCACCAAATGAACCT 59.370 45.455 0.00 0.00 0.00 3.50
6176 9464 2.627699 TCAGAAAGCCACCAAATGAACC 59.372 45.455 0.00 0.00 0.00 3.62
6212 9500 4.077108 TGTGATCTGTGGTAGTTACTCGT 58.923 43.478 0.00 0.00 0.00 4.18
6213 9501 4.696899 TGTGATCTGTGGTAGTTACTCG 57.303 45.455 0.00 0.00 0.00 4.18
6220 9508 5.292765 GGACATACATGTGATCTGTGGTAG 58.707 45.833 9.11 0.00 41.95 3.18
6224 9512 3.126073 CGGGACATACATGTGATCTGTG 58.874 50.000 9.11 0.56 41.95 3.66
6225 9513 2.766263 ACGGGACATACATGTGATCTGT 59.234 45.455 9.11 6.74 41.95 3.41
6229 9517 4.214986 TCAAACGGGACATACATGTGAT 57.785 40.909 9.11 0.00 41.95 3.06
6235 9523 4.895961 TGTACAATCAAACGGGACATACA 58.104 39.130 0.00 0.00 0.00 2.29
6244 9532 6.909895 TGACAGTTTTCATGTACAATCAAACG 59.090 34.615 15.79 13.83 30.93 3.60
6276 9565 9.590451 CAACAAAAATAAGGATGATAAGCATGT 57.410 29.630 0.00 0.00 37.34 3.21
6277 9566 9.590451 ACAACAAAAATAAGGATGATAAGCATG 57.410 29.630 0.00 0.00 37.34 4.06
6278 9567 9.590451 CACAACAAAAATAAGGATGATAAGCAT 57.410 29.630 0.00 0.00 40.77 3.79
6279 9568 7.545265 GCACAACAAAAATAAGGATGATAAGCA 59.455 33.333 0.00 0.00 0.00 3.91
6280 9569 7.761249 AGCACAACAAAAATAAGGATGATAAGC 59.239 33.333 0.00 0.00 0.00 3.09
6281 9570 9.079833 CAGCACAACAAAAATAAGGATGATAAG 57.920 33.333 0.00 0.00 0.00 1.73
6282 9571 8.801299 TCAGCACAACAAAAATAAGGATGATAA 58.199 29.630 0.00 0.00 0.00 1.75
6283 9572 8.347004 TCAGCACAACAAAAATAAGGATGATA 57.653 30.769 0.00 0.00 0.00 2.15
6284 9573 7.230849 TCAGCACAACAAAAATAAGGATGAT 57.769 32.000 0.00 0.00 0.00 2.45
6285 9574 6.647334 TCAGCACAACAAAAATAAGGATGA 57.353 33.333 0.00 0.00 0.00 2.92
6286 9575 7.385752 ACAATCAGCACAACAAAAATAAGGATG 59.614 33.333 0.00 0.00 0.00 3.51
6287 9576 7.385752 CACAATCAGCACAACAAAAATAAGGAT 59.614 33.333 0.00 0.00 0.00 3.24
6288 9577 6.700960 CACAATCAGCACAACAAAAATAAGGA 59.299 34.615 0.00 0.00 0.00 3.36
6289 9578 6.479660 ACACAATCAGCACAACAAAAATAAGG 59.520 34.615 0.00 0.00 0.00 2.69
6290 9579 7.467557 ACACAATCAGCACAACAAAAATAAG 57.532 32.000 0.00 0.00 0.00 1.73
6291 9580 7.168972 GCTACACAATCAGCACAACAAAAATAA 59.831 33.333 0.00 0.00 37.73 1.40
6292 9581 6.640499 GCTACACAATCAGCACAACAAAAATA 59.360 34.615 0.00 0.00 37.73 1.40
6293 9582 5.463061 GCTACACAATCAGCACAACAAAAAT 59.537 36.000 0.00 0.00 37.73 1.82
6294 9583 4.803088 GCTACACAATCAGCACAACAAAAA 59.197 37.500 0.00 0.00 37.73 1.94
6295 9584 4.358851 GCTACACAATCAGCACAACAAAA 58.641 39.130 0.00 0.00 37.73 2.44
6296 9585 3.547813 CGCTACACAATCAGCACAACAAA 60.548 43.478 0.00 0.00 37.66 2.83
6297 9586 2.032117 CGCTACACAATCAGCACAACAA 60.032 45.455 0.00 0.00 37.66 2.83
6298 9587 1.530720 CGCTACACAATCAGCACAACA 59.469 47.619 0.00 0.00 37.66 3.33
6299 9588 1.798223 TCGCTACACAATCAGCACAAC 59.202 47.619 0.00 0.00 37.66 3.32
6300 9589 2.068519 CTCGCTACACAATCAGCACAA 58.931 47.619 0.00 0.00 37.66 3.33
6301 9590 1.713597 CTCGCTACACAATCAGCACA 58.286 50.000 0.00 0.00 37.66 4.57
6302 9591 0.371645 GCTCGCTACACAATCAGCAC 59.628 55.000 0.00 0.00 37.66 4.40
6303 9592 0.740868 GGCTCGCTACACAATCAGCA 60.741 55.000 0.00 0.00 37.66 4.41
6304 9593 0.740868 TGGCTCGCTACACAATCAGC 60.741 55.000 0.00 0.00 0.00 4.26
6321 9610 1.266718 CACACTCGTGGAAACCAATGG 59.733 52.381 0.00 0.00 39.64 3.16
6322 9611 2.217750 TCACACTCGTGGAAACCAATG 58.782 47.619 1.77 0.00 43.79 2.82
6323 9612 2.631160 TCACACTCGTGGAAACCAAT 57.369 45.000 1.77 0.00 43.79 3.16
6324 9613 2.158885 TGATCACACTCGTGGAAACCAA 60.159 45.455 0.00 0.00 43.79 3.67
6325 9614 1.414550 TGATCACACTCGTGGAAACCA 59.585 47.619 0.00 0.00 43.79 3.67
6326 9615 2.163818 TGATCACACTCGTGGAAACC 57.836 50.000 0.00 0.00 43.79 3.27
6327 9616 3.390135 TCTTGATCACACTCGTGGAAAC 58.610 45.455 0.00 0.00 43.79 2.78
6379 9669 2.454336 ACGGAGGGAGTACATCATCA 57.546 50.000 0.00 0.00 0.00 3.07
6397 9687 6.969828 AAGTTGAGTCATCTATTTCGGAAC 57.030 37.500 4.14 0.00 0.00 3.62
6398 9688 6.934645 ACAAAGTTGAGTCATCTATTTCGGAA 59.065 34.615 4.14 0.00 0.00 4.30
6399 9689 6.464222 ACAAAGTTGAGTCATCTATTTCGGA 58.536 36.000 4.14 0.00 0.00 4.55
6400 9690 6.727824 ACAAAGTTGAGTCATCTATTTCGG 57.272 37.500 4.14 0.00 0.00 4.30
6401 9691 8.467402 AGTACAAAGTTGAGTCATCTATTTCG 57.533 34.615 4.14 0.00 0.00 3.46
6433 9723 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
6434 9724 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
6435 9725 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
6436 9726 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
6437 9727 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
6438 9728 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
6439 9729 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
6440 9730 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
6441 9731 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
6442 9732 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
6443 9733 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
6444 9734 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
6445 9735 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
6446 9736 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
6447 9737 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
6448 9738 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
6449 9739 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
6450 9740 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
6451 9741 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
6452 9742 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
6453 9743 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
6454 9744 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
6455 9745 2.235402 GACATACTCCCTCCGTTCCAAA 59.765 50.000 0.00 0.00 0.00 3.28
6456 9746 1.829222 GACATACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
6457 9747 1.481871 GACATACTCCCTCCGTTCCA 58.518 55.000 0.00 0.00 0.00 3.53
6458 9748 0.751452 GGACATACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 31.83 3.62
6459 9749 1.777941 AGGACATACTCCCTCCGTTC 58.222 55.000 0.00 0.00 40.53 3.95
6460 9750 3.393426 TTAGGACATACTCCCTCCGTT 57.607 47.619 0.00 0.00 40.53 4.44
6461 9751 3.393426 TTTAGGACATACTCCCTCCGT 57.607 47.619 0.00 0.00 40.53 4.69
6462 9752 4.957684 AATTTAGGACATACTCCCTCCG 57.042 45.455 0.00 0.00 40.53 4.63
6463 9753 6.231951 GCTTAATTTAGGACATACTCCCTCC 58.768 44.000 0.00 0.00 40.53 4.30
6464 9754 5.927115 CGCTTAATTTAGGACATACTCCCTC 59.073 44.000 0.00 0.00 40.53 4.30
6465 9755 5.365895 ACGCTTAATTTAGGACATACTCCCT 59.634 40.000 0.00 0.00 40.53 4.20
6466 9756 5.465724 CACGCTTAATTTAGGACATACTCCC 59.534 44.000 0.00 0.00 40.53 4.30
6467 9757 5.050295 GCACGCTTAATTTAGGACATACTCC 60.050 44.000 0.00 0.00 39.81 3.85
6468 9758 5.753921 AGCACGCTTAATTTAGGACATACTC 59.246 40.000 0.00 0.00 0.00 2.59
6469 9759 5.523916 CAGCACGCTTAATTTAGGACATACT 59.476 40.000 0.00 0.00 0.00 2.12
6485 9775 1.893335 TGCACACAATCAGCACGCT 60.893 52.632 0.00 0.00 32.55 5.07
6498 9788 4.629634 CGTTCATGGTAAGATTAGTGCACA 59.370 41.667 21.04 0.00 0.00 4.57
6502 9792 4.026804 GCGACGTTCATGGTAAGATTAGTG 60.027 45.833 0.00 0.00 0.00 2.74
6503 9793 4.110482 GCGACGTTCATGGTAAGATTAGT 58.890 43.478 0.00 0.00 0.00 2.24
6504 9794 4.109766 TGCGACGTTCATGGTAAGATTAG 58.890 43.478 0.00 0.00 0.00 1.73
6511 9801 4.247258 AGTAAAATGCGACGTTCATGGTA 58.753 39.130 5.23 0.00 0.00 3.25
6513 9803 3.485216 GGAGTAAAATGCGACGTTCATGG 60.485 47.826 5.23 0.00 0.00 3.66
6571 9877 4.634004 CAGAAATTCCCATGCGTACTGTAA 59.366 41.667 0.00 0.00 0.00 2.41
6572 9878 4.188462 CAGAAATTCCCATGCGTACTGTA 58.812 43.478 0.00 0.00 0.00 2.74
6573 9879 3.009723 CAGAAATTCCCATGCGTACTGT 58.990 45.455 0.00 0.00 0.00 3.55
6574 9880 2.355756 CCAGAAATTCCCATGCGTACTG 59.644 50.000 0.00 0.00 0.00 2.74
6575 9881 2.643551 CCAGAAATTCCCATGCGTACT 58.356 47.619 0.00 0.00 0.00 2.73
6576 9882 1.676006 CCCAGAAATTCCCATGCGTAC 59.324 52.381 0.00 0.00 0.00 3.67
6577 9883 1.562008 TCCCAGAAATTCCCATGCGTA 59.438 47.619 0.00 0.00 0.00 4.42
6578 9884 0.331278 TCCCAGAAATTCCCATGCGT 59.669 50.000 0.00 0.00 0.00 5.24
6579 9885 1.338973 CATCCCAGAAATTCCCATGCG 59.661 52.381 0.00 0.00 0.00 4.73
6580 9886 1.690352 CCATCCCAGAAATTCCCATGC 59.310 52.381 0.00 0.00 0.00 4.06
6581 9887 3.228453 CTCCATCCCAGAAATTCCCATG 58.772 50.000 0.00 0.00 0.00 3.66
6582 9888 2.178544 CCTCCATCCCAGAAATTCCCAT 59.821 50.000 0.00 0.00 0.00 4.00
6583 9889 1.570501 CCTCCATCCCAGAAATTCCCA 59.429 52.381 0.00 0.00 0.00 4.37
6584 9890 1.570979 ACCTCCATCCCAGAAATTCCC 59.429 52.381 0.00 0.00 0.00 3.97
6585 9891 3.388552 AACCTCCATCCCAGAAATTCC 57.611 47.619 0.00 0.00 0.00 3.01
6586 9892 4.089361 ACAAACCTCCATCCCAGAAATTC 58.911 43.478 0.00 0.00 0.00 2.17
6587 9893 4.132122 ACAAACCTCCATCCCAGAAATT 57.868 40.909 0.00 0.00 0.00 1.82
6592 9898 1.839424 GGAACAAACCTCCATCCCAG 58.161 55.000 0.00 0.00 32.77 4.45
6624 9930 2.250921 ATCAATCAAACCATGCCCCA 57.749 45.000 0.00 0.00 0.00 4.96
6651 9957 7.524532 GCATCCTGTAGCTTGTATCTTCATCTA 60.525 40.741 0.00 0.00 0.00 1.98
6708 10015 2.091278 ACGTAGATGGGAGGAGAATGGA 60.091 50.000 0.00 0.00 0.00 3.41
6727 10034 1.470098 AGGAGCAGCAAAGCAAATACG 59.530 47.619 0.00 0.00 36.85 3.06
6728 10035 2.872370 CAGGAGCAGCAAAGCAAATAC 58.128 47.619 0.00 0.00 36.85 1.89
6730 10037 0.037605 GCAGGAGCAGCAAAGCAAAT 60.038 50.000 0.00 0.00 41.58 2.32
6731 10038 1.111116 AGCAGGAGCAGCAAAGCAAA 61.111 50.000 0.00 0.00 45.49 3.68
6734 10041 1.924320 CTGAGCAGGAGCAGCAAAGC 61.924 60.000 0.00 0.00 45.49 3.51
6735 10042 2.172534 CTGAGCAGGAGCAGCAAAG 58.827 57.895 0.00 0.00 45.49 2.77
6736 10043 4.391869 CTGAGCAGGAGCAGCAAA 57.608 55.556 0.00 0.00 45.49 3.68
6752 10061 2.697751 CGTCTCCTGATTCCTGATTCCT 59.302 50.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.