Multiple sequence alignment - TraesCS6B01G098300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G098300 chr6B 100.000 5329 0 0 1 5329 75914293 75919621 0.000000e+00 9841.0
1 TraesCS6B01G098300 chr6B 73.952 668 149 18 3546 4205 573414369 573413719 4.120000e-61 246.0
2 TraesCS6B01G098300 chr6D 95.788 1757 53 12 2870 4618 36223689 36225432 0.000000e+00 2815.0
3 TraesCS6B01G098300 chr6D 94.295 1297 42 8 741 2005 36221789 36223085 0.000000e+00 1956.0
4 TraesCS6B01G098300 chr6D 92.541 429 24 5 4903 5329 36226047 36226469 4.560000e-170 608.0
5 TraesCS6B01G098300 chr6D 79.770 697 129 12 3530 4220 470382746 470382056 3.710000e-136 496.0
6 TraesCS6B01G098300 chr6D 92.879 323 22 1 1 322 36213707 36214029 8.080000e-128 468.0
7 TraesCS6B01G098300 chr6D 95.312 256 10 2 4613 4867 36225494 36225748 6.430000e-109 405.0
8 TraesCS6B01G098300 chr6D 87.385 325 15 9 403 703 36221470 36221792 3.050000e-92 350.0
9 TraesCS6B01G098300 chr6D 74.264 781 182 19 3532 4304 148483022 148483791 1.440000e-80 311.0
10 TraesCS6B01G098300 chr6D 89.024 246 21 5 2117 2358 95269854 95269611 3.120000e-77 300.0
11 TraesCS6B01G098300 chr6D 85.211 142 19 2 2373 2514 313838163 313838302 1.550000e-30 145.0
12 TraesCS6B01G098300 chr6A 91.005 1523 63 27 557 2068 40216943 40218402 0.000000e+00 1986.0
13 TraesCS6B01G098300 chr6A 96.496 999 33 2 3457 4454 40221061 40222058 0.000000e+00 1650.0
14 TraesCS6B01G098300 chr6A 87.402 635 56 17 4698 5329 600893995 600894608 0.000000e+00 708.0
15 TraesCS6B01G098300 chr6A 93.817 469 20 6 2914 3377 40219782 40220246 0.000000e+00 697.0
16 TraesCS6B01G098300 chr6A 92.035 452 17 7 4889 5329 40223033 40223476 7.580000e-173 617.0
17 TraesCS6B01G098300 chr6A 91.451 386 14 9 4617 4992 40222656 40223032 3.680000e-141 512.0
18 TraesCS6B01G098300 chr6A 87.711 415 36 10 2112 2514 40218683 40219094 2.250000e-128 470.0
19 TraesCS6B01G098300 chr6A 79.023 696 136 10 3530 4220 615131606 615132296 8.080000e-128 468.0
20 TraesCS6B01G098300 chr6A 92.746 193 13 1 3 195 39960686 39960877 1.460000e-70 278.0
21 TraesCS6B01G098300 chr6A 97.000 100 3 0 4519 4618 40222493 40222592 9.180000e-38 169.0
22 TraesCS6B01G098300 chr6A 85.915 142 18 2 2373 2514 375147615 375147754 3.320000e-32 150.0
23 TraesCS6B01G098300 chr6A 97.619 84 2 0 4438 4521 40222082 40222165 1.550000e-30 145.0
24 TraesCS6B01G098300 chr6A 90.909 99 8 1 225 322 40216515 40216613 1.200000e-26 132.0
25 TraesCS6B01G098300 chr6A 93.902 82 3 2 4530 4609 600887252 600887333 7.250000e-24 122.0
26 TraesCS6B01G098300 chr4D 89.914 1507 70 21 451 1893 147078930 147080418 0.000000e+00 1866.0
27 TraesCS6B01G098300 chr4D 94.869 1111 50 4 3417 4521 147081276 147082385 0.000000e+00 1729.0
28 TraesCS6B01G098300 chr4D 84.567 473 35 21 2877 3339 147080816 147081260 8.200000e-118 435.0
29 TraesCS6B01G098300 chr4D 86.905 252 24 8 2109 2357 198604251 198604496 1.890000e-69 274.0
30 TraesCS6B01G098300 chr4D 93.902 82 3 1 4729 4810 481460595 481460516 7.250000e-24 122.0
31 TraesCS6B01G098300 chr4A 91.414 1188 59 16 644 1814 379464314 379465475 0.000000e+00 1589.0
32 TraesCS6B01G098300 chr4A 94.398 964 52 2 3486 4449 379468375 379469336 0.000000e+00 1480.0
33 TraesCS6B01G098300 chr4A 96.532 346 12 0 2517 2862 691286250 691286595 1.660000e-159 573.0
34 TraesCS6B01G098300 chr4A 81.522 644 50 30 2877 3491 379466458 379467061 2.910000e-127 466.0
35 TraesCS6B01G098300 chr4A 88.136 118 12 1 1823 1940 379466092 379466207 7.200000e-29 139.0
36 TraesCS6B01G098300 chr4A 95.385 65 3 0 554 618 379464263 379464327 2.630000e-18 104.0
37 TraesCS6B01G098300 chrUn 90.731 1122 94 9 3417 4529 52693515 52694635 0.000000e+00 1487.0
38 TraesCS6B01G098300 chrUn 90.731 1122 94 9 3417 4529 306231248 306232368 0.000000e+00 1487.0
39 TraesCS6B01G098300 chrUn 88.667 450 33 5 1499 1940 52691415 52691854 2.830000e-147 532.0
40 TraesCS6B01G098300 chrUn 88.667 450 33 5 1499 1940 306229148 306229587 2.830000e-147 532.0
41 TraesCS6B01G098300 chrUn 82.110 654 67 21 428 1042 52690795 52691437 1.020000e-141 514.0
42 TraesCS6B01G098300 chrUn 82.110 654 67 21 428 1042 306228528 306229170 1.020000e-141 514.0
43 TraesCS6B01G098300 chrUn 86.869 297 23 9 1651 1940 52692560 52692847 8.610000e-83 318.0
44 TraesCS6B01G098300 chrUn 86.869 297 23 9 1651 1940 306230293 306230580 8.610000e-83 318.0
45 TraesCS6B01G098300 chrUn 86.577 298 25 8 1651 1941 52692122 52692411 1.110000e-81 315.0
46 TraesCS6B01G098300 chrUn 86.577 298 25 8 1651 1941 306229855 306230144 1.110000e-81 315.0
47 TraesCS6B01G098300 chrUn 82.019 317 26 17 3038 3338 52693197 52693498 1.920000e-59 241.0
48 TraesCS6B01G098300 chrUn 82.019 317 26 17 3038 3338 306230930 306231231 1.920000e-59 241.0
49 TraesCS6B01G098300 chr7B 96.307 352 12 1 2512 2863 426974412 426974762 1.290000e-160 577.0
50 TraesCS6B01G098300 chr7B 86.831 243 29 3 2117 2357 221992827 221992586 8.800000e-68 268.0
51 TraesCS6B01G098300 chr7B 86.122 245 29 4 2114 2357 596310884 596311124 5.290000e-65 259.0
52 TraesCS6B01G098300 chr4B 96.056 355 13 1 2510 2863 663723473 663723119 1.290000e-160 577.0
53 TraesCS6B01G098300 chr3B 96.286 350 13 0 2514 2863 800019030 800019379 4.630000e-160 575.0
54 TraesCS6B01G098300 chr3B 92.683 82 3 2 4729 4810 805329379 805329301 1.210000e-21 115.0
55 TraesCS6B01G098300 chr1B 96.532 346 12 0 2517 2862 563062531 563062876 1.660000e-159 573.0
56 TraesCS6B01G098300 chr1B 82.016 367 60 6 1385 1748 664777022 664777385 1.860000e-79 307.0
57 TraesCS6B01G098300 chr3A 96.264 348 12 1 2511 2858 468166217 468165871 2.150000e-158 569.0
58 TraesCS6B01G098300 chr3A 82.716 162 22 5 2356 2514 488313422 488313580 7.200000e-29 139.0
59 TraesCS6B01G098300 chr3A 86.607 112 9 4 4740 4848 741706924 741707032 9.380000e-23 119.0
60 TraesCS6B01G098300 chr3A 76.515 132 25 6 3747 3875 508534464 508534336 3.440000e-07 67.6
61 TraesCS6B01G098300 chr3A 100.000 29 0 0 2036 2064 568248955 568248927 3.000000e-03 54.7
62 TraesCS6B01G098300 chr2B 95.291 361 14 3 2499 2859 223728465 223728822 2.150000e-158 569.0
63 TraesCS6B01G098300 chr2B 94.780 364 16 3 2500 2863 650231632 650231272 1.000000e-156 564.0
64 TraesCS6B01G098300 chr2B 94.972 358 16 2 2507 2863 175453397 175453041 1.300000e-155 560.0
65 TraesCS6B01G098300 chr2B 90.709 409 21 8 4931 5329 22729149 22728748 3.650000e-146 529.0
66 TraesCS6B01G098300 chr2B 84.585 253 34 4 2108 2357 23623464 23623214 4.120000e-61 246.0
67 TraesCS6B01G098300 chr2B 83.077 260 11 2 4613 4865 22729662 22729429 7.000000e-49 206.0
68 TraesCS6B01G098300 chr2B 95.122 82 2 1 4729 4810 5162979 5163058 1.560000e-25 128.0
69 TraesCS6B01G098300 chr2B 100.000 51 0 0 4529 4579 22729999 22729949 1.580000e-15 95.3
70 TraesCS6B01G098300 chr2B 97.917 48 1 0 4570 4617 22729766 22729719 3.420000e-12 84.2
71 TraesCS6B01G098300 chr5A 92.090 354 15 4 4986 5329 487329034 487328684 2.230000e-133 486.0
72 TraesCS6B01G098300 chr5A 96.053 76 2 1 4523 4597 487329574 487329499 7.250000e-24 122.0
73 TraesCS6B01G098300 chr5A 82.963 135 19 4 5194 5325 635467417 635467284 9.380000e-23 119.0
74 TraesCS6B01G098300 chr5D 88.824 340 31 6 4991 5329 415724013 415723680 1.380000e-110 411.0
75 TraesCS6B01G098300 chr5D 84.009 444 39 17 1 412 404860118 404860561 1.080000e-106 398.0
76 TraesCS6B01G098300 chr5D 77.344 384 40 21 4665 5034 539865951 539865601 3.280000e-42 183.0
77 TraesCS6B01G098300 chr7A 79.707 478 81 16 1280 1749 545934593 545935062 1.110000e-86 331.0
78 TraesCS6B01G098300 chr7A 86.014 143 16 4 2376 2517 494032549 494032410 3.320000e-32 150.0
79 TraesCS6B01G098300 chr7A 82.317 164 25 4 2356 2517 18973331 18973170 7.200000e-29 139.0
80 TraesCS6B01G098300 chr1A 82.834 367 57 6 1385 1748 573242798 573243161 1.850000e-84 324.0
81 TraesCS6B01G098300 chr1A 82.000 150 16 6 4666 4810 517388225 517388368 3.370000e-22 117.0
82 TraesCS6B01G098300 chr7D 84.768 302 40 4 8 308 12915024 12914728 1.120000e-76 298.0
83 TraesCS6B01G098300 chr7D 87.190 242 28 2 2117 2357 245553063 245552824 6.800000e-69 272.0
84 TraesCS6B01G098300 chr2D 87.449 247 21 8 2116 2357 19617323 19617082 5.260000e-70 276.0
85 TraesCS6B01G098300 chr2D 82.963 135 15 8 5196 5325 483759851 483759720 1.210000e-21 115.0
86 TraesCS6B01G098300 chr2A 85.772 246 26 7 2117 2358 755535353 755535113 8.860000e-63 252.0
87 TraesCS6B01G098300 chr2A 85.915 142 18 2 2373 2514 349924600 349924739 3.320000e-32 150.0
88 TraesCS6B01G098300 chr2A 83.333 162 22 4 2356 2514 607192043 607192202 1.550000e-30 145.0
89 TraesCS6B01G098300 chr1D 85.915 142 18 2 2376 2517 103708755 103708616 3.320000e-32 150.0
90 TraesCS6B01G098300 chr1D 85.211 142 19 2 2373 2514 189188408 189188547 1.550000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G098300 chr6B 75914293 75919621 5328 False 9841.000000 9841 100.000000 1 5329 1 chr6B.!!$F1 5328
1 TraesCS6B01G098300 chr6B 573413719 573414369 650 True 246.000000 246 73.952000 3546 4205 1 chr6B.!!$R1 659
2 TraesCS6B01G098300 chr6D 36221470 36226469 4999 False 1226.800000 2815 93.064200 403 5329 5 chr6D.!!$F4 4926
3 TraesCS6B01G098300 chr6D 470382056 470382746 690 True 496.000000 496 79.770000 3530 4220 1 chr6D.!!$R2 690
4 TraesCS6B01G098300 chr6D 148483022 148483791 769 False 311.000000 311 74.264000 3532 4304 1 chr6D.!!$F2 772
5 TraesCS6B01G098300 chr6A 40216515 40223476 6961 False 708.666667 1986 93.115889 225 5329 9 chr6A.!!$F6 5104
6 TraesCS6B01G098300 chr6A 600893995 600894608 613 False 708.000000 708 87.402000 4698 5329 1 chr6A.!!$F4 631
7 TraesCS6B01G098300 chr6A 615131606 615132296 690 False 468.000000 468 79.023000 3530 4220 1 chr6A.!!$F5 690
8 TraesCS6B01G098300 chr4D 147078930 147082385 3455 False 1343.333333 1866 89.783333 451 4521 3 chr4D.!!$F2 4070
9 TraesCS6B01G098300 chr4A 379464263 379469336 5073 False 755.600000 1589 90.171000 554 4449 5 chr4A.!!$F2 3895
10 TraesCS6B01G098300 chrUn 52690795 52694635 3840 False 567.833333 1487 86.162167 428 4529 6 chrUn.!!$F1 4101
11 TraesCS6B01G098300 chrUn 306228528 306232368 3840 False 567.833333 1487 86.162167 428 4529 6 chrUn.!!$F2 4101
12 TraesCS6B01G098300 chr2B 22728748 22729999 1251 True 228.625000 529 92.925750 4529 5329 4 chr2B.!!$R4 800
13 TraesCS6B01G098300 chr5A 487328684 487329574 890 True 304.000000 486 94.071500 4523 5329 2 chr5A.!!$R2 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.036010 AGGGAGGCATCAAAGACACG 60.036 55.0 0.00 0.00 0.00 4.49 F
102 103 0.168788 CGACATGTGCGGCAATTTCT 59.831 50.0 1.15 0.00 0.00 2.52 F
1728 2524 0.316841 GGCTCATCTCCATCGACCTC 59.683 60.0 0.00 0.00 0.00 3.85 F
2680 5185 0.174389 ACTCGCATGTGCTACAGGAG 59.826 55.0 0.00 4.64 39.32 3.69 F
3434 6311 0.235665 CGAATACGGATGCACATGCC 59.764 55.0 0.49 0.00 36.65 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 4023 0.460284 CGGTGACAGCATGGGTCTAC 60.460 60.000 5.35 0.00 43.62 2.59 R
1971 4040 1.133253 CAGCAGCGAATGTTGACGG 59.867 57.895 0.00 0.00 42.36 4.79 R
2853 5358 0.108207 AGGCTGGTCATAGAGCATGC 59.892 55.000 10.51 10.51 39.36 4.06 R
4223 9150 4.338879 CTTCCTTTGATGGGTGAATGTCT 58.661 43.478 0.00 0.00 0.00 3.41 R
5115 11083 1.065551 GTGAAACCAACACAGGTGCTC 59.934 52.381 0.00 0.00 42.25 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.610174 TGACAGTGGATGAGGTGAGC 59.390 55.000 0.00 0.00 0.00 4.26
20 21 0.459237 GACAGTGGATGAGGTGAGCG 60.459 60.000 0.00 0.00 0.00 5.03
21 22 1.188219 ACAGTGGATGAGGTGAGCGT 61.188 55.000 0.00 0.00 0.00 5.07
22 23 0.738762 CAGTGGATGAGGTGAGCGTG 60.739 60.000 0.00 0.00 0.00 5.34
23 24 2.103042 GTGGATGAGGTGAGCGTGC 61.103 63.158 0.00 0.00 0.00 5.34
24 25 2.285773 TGGATGAGGTGAGCGTGCT 61.286 57.895 0.00 0.00 0.00 4.40
25 26 1.520342 GGATGAGGTGAGCGTGCTC 60.520 63.158 14.81 14.81 43.01 4.26
26 27 1.520342 GATGAGGTGAGCGTGCTCC 60.520 63.158 18.51 10.01 42.09 4.70
27 28 1.954362 GATGAGGTGAGCGTGCTCCT 61.954 60.000 18.51 10.39 42.09 3.69
28 29 1.954362 ATGAGGTGAGCGTGCTCCTC 61.954 60.000 18.51 18.28 44.74 3.71
29 30 2.283532 AGGTGAGCGTGCTCCTCT 60.284 61.111 18.51 12.61 42.09 3.69
30 31 2.183046 GGTGAGCGTGCTCCTCTC 59.817 66.667 18.51 7.05 42.09 3.20
31 32 2.202544 GTGAGCGTGCTCCTCTCG 60.203 66.667 18.51 0.00 42.09 4.04
32 33 2.673341 TGAGCGTGCTCCTCTCGT 60.673 61.111 18.51 0.00 42.09 4.18
33 34 1.376812 TGAGCGTGCTCCTCTCGTA 60.377 57.895 18.51 0.00 42.09 3.43
34 35 1.062845 GAGCGTGCTCCTCTCGTAC 59.937 63.158 10.77 0.00 37.11 3.67
35 36 1.370587 GAGCGTGCTCCTCTCGTACT 61.371 60.000 10.77 0.00 37.11 2.73
36 37 1.062845 GCGTGCTCCTCTCGTACTC 59.937 63.158 0.00 0.00 34.47 2.59
37 38 1.348938 CGTGCTCCTCTCGTACTCG 59.651 63.158 0.00 0.00 38.55 4.18
38 39 1.062845 GTGCTCCTCTCGTACTCGC 59.937 63.158 0.00 0.00 36.96 5.03
39 40 2.113433 TGCTCCTCTCGTACTCGCC 61.113 63.158 0.00 0.00 36.96 5.54
40 41 3.015677 CTCCTCTCGTACTCGCCG 58.984 66.667 0.00 0.00 36.96 6.46
41 42 3.170810 CTCCTCTCGTACTCGCCGC 62.171 68.421 0.00 0.00 36.96 6.53
42 43 3.506096 CCTCTCGTACTCGCCGCA 61.506 66.667 0.00 0.00 36.96 5.69
43 44 2.277373 CTCTCGTACTCGCCGCAC 60.277 66.667 0.00 0.00 36.96 5.34
44 45 2.745100 TCTCGTACTCGCCGCACT 60.745 61.111 0.00 0.00 36.96 4.40
45 46 2.577112 CTCGTACTCGCCGCACTG 60.577 66.667 0.00 0.00 36.96 3.66
46 47 3.324099 CTCGTACTCGCCGCACTGT 62.324 63.158 0.00 0.00 36.96 3.55
47 48 2.874780 CGTACTCGCCGCACTGTC 60.875 66.667 0.00 0.00 0.00 3.51
48 49 2.257371 GTACTCGCCGCACTGTCA 59.743 61.111 0.00 0.00 0.00 3.58
49 50 1.801913 GTACTCGCCGCACTGTCAG 60.802 63.158 0.00 0.00 0.00 3.51
50 51 1.969589 TACTCGCCGCACTGTCAGA 60.970 57.895 6.91 0.00 0.00 3.27
51 52 1.923227 TACTCGCCGCACTGTCAGAG 61.923 60.000 6.91 0.00 0.00 3.35
52 53 3.978723 CTCGCCGCACTGTCAGAGG 62.979 68.421 6.91 8.00 0.00 3.69
54 55 3.695606 GCCGCACTGTCAGAGGGA 61.696 66.667 14.59 0.00 0.00 4.20
55 56 2.575993 CCGCACTGTCAGAGGGAG 59.424 66.667 14.59 3.02 0.00 4.30
56 57 2.575993 CGCACTGTCAGAGGGAGG 59.424 66.667 6.91 0.00 0.00 4.30
57 58 2.267324 GCACTGTCAGAGGGAGGC 59.733 66.667 6.91 0.00 0.00 4.70
58 59 2.587247 GCACTGTCAGAGGGAGGCA 61.587 63.158 6.91 0.00 0.00 4.75
59 60 1.908340 GCACTGTCAGAGGGAGGCAT 61.908 60.000 6.91 0.00 0.00 4.40
60 61 0.177604 CACTGTCAGAGGGAGGCATC 59.822 60.000 6.91 0.00 0.00 3.91
61 62 0.252421 ACTGTCAGAGGGAGGCATCA 60.252 55.000 6.91 0.00 0.00 3.07
62 63 0.907486 CTGTCAGAGGGAGGCATCAA 59.093 55.000 0.00 0.00 0.00 2.57
63 64 1.280133 CTGTCAGAGGGAGGCATCAAA 59.720 52.381 0.00 0.00 0.00 2.69
64 65 1.280133 TGTCAGAGGGAGGCATCAAAG 59.720 52.381 0.00 0.00 0.00 2.77
65 66 1.556911 GTCAGAGGGAGGCATCAAAGA 59.443 52.381 0.00 0.00 0.00 2.52
66 67 1.556911 TCAGAGGGAGGCATCAAAGAC 59.443 52.381 0.00 0.00 0.00 3.01
67 68 1.280133 CAGAGGGAGGCATCAAAGACA 59.720 52.381 0.00 0.00 0.00 3.41
68 69 1.280421 AGAGGGAGGCATCAAAGACAC 59.720 52.381 0.00 0.00 0.00 3.67
69 70 0.036010 AGGGAGGCATCAAAGACACG 60.036 55.000 0.00 0.00 0.00 4.49
70 71 1.648467 GGGAGGCATCAAAGACACGC 61.648 60.000 0.00 0.00 0.00 5.34
71 72 1.648467 GGAGGCATCAAAGACACGCC 61.648 60.000 0.00 0.00 43.31 5.68
72 73 2.480555 GGCATCAAAGACACGCCG 59.519 61.111 0.00 0.00 32.14 6.46
73 74 2.202349 GCATCAAAGACACGCCGC 60.202 61.111 0.00 0.00 0.00 6.53
74 75 2.480555 CATCAAAGACACGCCGCC 59.519 61.111 0.00 0.00 0.00 6.13
75 76 3.118454 ATCAAAGACACGCCGCCG 61.118 61.111 0.00 0.00 41.14 6.46
99 100 2.876955 CCGACATGTGCGGCAATT 59.123 55.556 19.11 0.00 42.55 2.32
100 101 1.212490 CCGACATGTGCGGCAATTT 59.788 52.632 19.11 0.00 42.55 1.82
101 102 0.798009 CCGACATGTGCGGCAATTTC 60.798 55.000 19.11 3.08 42.55 2.17
102 103 0.168788 CGACATGTGCGGCAATTTCT 59.831 50.000 1.15 0.00 0.00 2.52
103 104 1.396648 CGACATGTGCGGCAATTTCTA 59.603 47.619 1.15 0.00 0.00 2.10
104 105 2.032054 CGACATGTGCGGCAATTTCTAT 59.968 45.455 1.15 0.00 0.00 1.98
105 106 3.487376 CGACATGTGCGGCAATTTCTATT 60.487 43.478 1.15 0.00 0.00 1.73
106 107 3.772932 ACATGTGCGGCAATTTCTATTG 58.227 40.909 3.23 0.00 43.28 1.90
107 108 3.193267 ACATGTGCGGCAATTTCTATTGT 59.807 39.130 3.23 0.00 42.56 2.71
108 109 4.397730 ACATGTGCGGCAATTTCTATTGTA 59.602 37.500 3.23 0.00 42.56 2.41
109 110 4.614555 TGTGCGGCAATTTCTATTGTAG 57.385 40.909 3.23 0.00 42.56 2.74
110 111 4.006989 TGTGCGGCAATTTCTATTGTAGT 58.993 39.130 3.23 0.00 42.56 2.73
111 112 5.179533 TGTGCGGCAATTTCTATTGTAGTA 58.820 37.500 3.23 0.00 42.56 1.82
112 113 5.820423 TGTGCGGCAATTTCTATTGTAGTAT 59.180 36.000 3.23 0.00 42.56 2.12
113 114 6.018262 TGTGCGGCAATTTCTATTGTAGTATC 60.018 38.462 3.23 0.00 42.56 2.24
114 115 6.202954 GTGCGGCAATTTCTATTGTAGTATCT 59.797 38.462 3.23 0.00 42.56 1.98
115 116 6.765989 TGCGGCAATTTCTATTGTAGTATCTT 59.234 34.615 0.00 0.00 42.56 2.40
116 117 7.929245 TGCGGCAATTTCTATTGTAGTATCTTA 59.071 33.333 0.00 0.00 42.56 2.10
117 118 8.936864 GCGGCAATTTCTATTGTAGTATCTTAT 58.063 33.333 0.00 0.00 42.56 1.73
127 128 9.307121 CTATTGTAGTATCTTATACTGCCATGC 57.693 37.037 9.35 0.00 30.62 4.06
128 129 6.664428 TGTAGTATCTTATACTGCCATGCA 57.336 37.500 9.35 0.00 36.92 3.96
137 138 2.889617 TGCCATGCAGCAAGATGC 59.110 55.556 0.00 2.92 46.68 3.91
148 149 0.368227 GCAAGATGCTTCTGTCGACG 59.632 55.000 11.62 6.07 40.96 5.12
149 150 0.994995 CAAGATGCTTCTGTCGACGG 59.005 55.000 18.66 18.66 30.72 4.79
150 151 0.603569 AAGATGCTTCTGTCGACGGT 59.396 50.000 23.27 4.10 30.72 4.83
151 152 1.460504 AGATGCTTCTGTCGACGGTA 58.539 50.000 23.27 13.70 0.00 4.02
152 153 2.025155 AGATGCTTCTGTCGACGGTAT 58.975 47.619 23.27 13.50 0.00 2.73
153 154 2.427453 AGATGCTTCTGTCGACGGTATT 59.573 45.455 23.27 6.09 0.00 1.89
154 155 3.630769 AGATGCTTCTGTCGACGGTATTA 59.369 43.478 23.27 9.91 0.00 0.98
155 156 4.278669 AGATGCTTCTGTCGACGGTATTAT 59.721 41.667 23.27 13.82 0.00 1.28
156 157 5.472478 AGATGCTTCTGTCGACGGTATTATA 59.528 40.000 23.27 7.60 0.00 0.98
157 158 5.700722 TGCTTCTGTCGACGGTATTATAT 57.299 39.130 23.27 0.00 0.00 0.86
158 159 6.080648 TGCTTCTGTCGACGGTATTATATT 57.919 37.500 23.27 0.00 0.00 1.28
159 160 5.918576 TGCTTCTGTCGACGGTATTATATTG 59.081 40.000 23.27 2.41 0.00 1.90
160 161 5.919141 GCTTCTGTCGACGGTATTATATTGT 59.081 40.000 23.27 0.00 0.00 2.71
161 162 6.420008 GCTTCTGTCGACGGTATTATATTGTT 59.580 38.462 23.27 0.00 0.00 2.83
162 163 7.567048 GCTTCTGTCGACGGTATTATATTGTTG 60.567 40.741 23.27 0.34 0.00 3.33
163 164 6.798482 TCTGTCGACGGTATTATATTGTTGT 58.202 36.000 23.27 0.00 0.00 3.32
164 165 6.693978 TCTGTCGACGGTATTATATTGTTGTG 59.306 38.462 23.27 0.00 0.00 3.33
165 166 6.331845 TGTCGACGGTATTATATTGTTGTGT 58.668 36.000 11.62 0.00 0.00 3.72
166 167 6.253942 TGTCGACGGTATTATATTGTTGTGTG 59.746 38.462 11.62 0.00 0.00 3.82
167 168 6.254157 GTCGACGGTATTATATTGTTGTGTGT 59.746 38.462 0.00 0.00 0.00 3.72
168 169 6.812656 TCGACGGTATTATATTGTTGTGTGTT 59.187 34.615 0.00 0.00 0.00 3.32
169 170 6.897663 CGACGGTATTATATTGTTGTGTGTTG 59.102 38.462 0.00 0.00 0.00 3.33
170 171 6.548171 ACGGTATTATATTGTTGTGTGTTGC 58.452 36.000 0.00 0.00 0.00 4.17
171 172 5.968848 CGGTATTATATTGTTGTGTGTTGCC 59.031 40.000 0.00 0.00 0.00 4.52
172 173 6.183360 CGGTATTATATTGTTGTGTGTTGCCT 60.183 38.462 0.00 0.00 0.00 4.75
173 174 6.972328 GGTATTATATTGTTGTGTGTTGCCTG 59.028 38.462 0.00 0.00 0.00 4.85
174 175 6.588719 ATTATATTGTTGTGTGTTGCCTGT 57.411 33.333 0.00 0.00 0.00 4.00
175 176 2.582728 ATTGTTGTGTGTTGCCTGTG 57.417 45.000 0.00 0.00 0.00 3.66
176 177 1.539157 TTGTTGTGTGTTGCCTGTGA 58.461 45.000 0.00 0.00 0.00 3.58
177 178 1.761449 TGTTGTGTGTTGCCTGTGAT 58.239 45.000 0.00 0.00 0.00 3.06
178 179 1.404748 TGTTGTGTGTTGCCTGTGATG 59.595 47.619 0.00 0.00 0.00 3.07
179 180 1.405105 GTTGTGTGTTGCCTGTGATGT 59.595 47.619 0.00 0.00 0.00 3.06
180 181 1.308047 TGTGTGTTGCCTGTGATGTC 58.692 50.000 0.00 0.00 0.00 3.06
181 182 1.308047 GTGTGTTGCCTGTGATGTCA 58.692 50.000 0.00 0.00 0.00 3.58
182 183 1.881973 GTGTGTTGCCTGTGATGTCAT 59.118 47.619 0.00 0.00 0.00 3.06
183 184 2.294233 GTGTGTTGCCTGTGATGTCATT 59.706 45.455 0.00 0.00 0.00 2.57
184 185 2.957680 TGTGTTGCCTGTGATGTCATTT 59.042 40.909 0.00 0.00 0.00 2.32
185 186 3.384146 TGTGTTGCCTGTGATGTCATTTT 59.616 39.130 0.00 0.00 0.00 1.82
186 187 4.582240 TGTGTTGCCTGTGATGTCATTTTA 59.418 37.500 0.00 0.00 0.00 1.52
187 188 5.156355 GTGTTGCCTGTGATGTCATTTTAG 58.844 41.667 0.00 0.00 0.00 1.85
188 189 4.826733 TGTTGCCTGTGATGTCATTTTAGT 59.173 37.500 0.00 0.00 0.00 2.24
189 190 5.301551 TGTTGCCTGTGATGTCATTTTAGTT 59.698 36.000 0.00 0.00 0.00 2.24
190 191 6.183360 TGTTGCCTGTGATGTCATTTTAGTTT 60.183 34.615 0.00 0.00 0.00 2.66
191 192 5.771469 TGCCTGTGATGTCATTTTAGTTTG 58.229 37.500 0.00 0.00 0.00 2.93
192 193 5.301551 TGCCTGTGATGTCATTTTAGTTTGT 59.698 36.000 0.00 0.00 0.00 2.83
193 194 6.183360 TGCCTGTGATGTCATTTTAGTTTGTT 60.183 34.615 0.00 0.00 0.00 2.83
194 195 6.701400 GCCTGTGATGTCATTTTAGTTTGTTT 59.299 34.615 0.00 0.00 0.00 2.83
195 196 7.096065 GCCTGTGATGTCATTTTAGTTTGTTTC 60.096 37.037 0.00 0.00 0.00 2.78
196 197 7.382218 CCTGTGATGTCATTTTAGTTTGTTTCC 59.618 37.037 0.00 0.00 0.00 3.13
197 198 7.206687 TGTGATGTCATTTTAGTTTGTTTCCC 58.793 34.615 0.00 0.00 0.00 3.97
198 199 7.147828 TGTGATGTCATTTTAGTTTGTTTCCCA 60.148 33.333 0.00 0.00 0.00 4.37
199 200 7.872483 GTGATGTCATTTTAGTTTGTTTCCCAT 59.128 33.333 0.00 0.00 0.00 4.00
200 201 7.871973 TGATGTCATTTTAGTTTGTTTCCCATG 59.128 33.333 0.00 0.00 0.00 3.66
201 202 7.118496 TGTCATTTTAGTTTGTTTCCCATGT 57.882 32.000 0.00 0.00 0.00 3.21
202 203 6.983307 TGTCATTTTAGTTTGTTTCCCATGTG 59.017 34.615 0.00 0.00 0.00 3.21
203 204 7.147828 TGTCATTTTAGTTTGTTTCCCATGTGA 60.148 33.333 0.00 0.00 0.00 3.58
204 205 7.872483 GTCATTTTAGTTTGTTTCCCATGTGAT 59.128 33.333 0.00 0.00 0.00 3.06
205 206 7.871973 TCATTTTAGTTTGTTTCCCATGTGATG 59.128 33.333 0.00 0.00 0.00 3.07
206 207 3.665745 AGTTTGTTTCCCATGTGATGC 57.334 42.857 0.00 0.00 0.00 3.91
207 208 2.964464 AGTTTGTTTCCCATGTGATGCA 59.036 40.909 0.00 0.00 0.00 3.96
208 209 3.579586 AGTTTGTTTCCCATGTGATGCAT 59.420 39.130 0.00 0.00 38.60 3.96
209 210 3.872511 TTGTTTCCCATGTGATGCATC 57.127 42.857 20.14 20.14 35.19 3.91
210 211 1.744522 TGTTTCCCATGTGATGCATCG 59.255 47.619 21.34 7.24 35.19 3.84
211 212 2.016318 GTTTCCCATGTGATGCATCGA 58.984 47.619 21.34 11.18 35.19 3.59
212 213 2.620115 GTTTCCCATGTGATGCATCGAT 59.380 45.455 21.34 12.97 35.19 3.59
213 214 3.767902 TTCCCATGTGATGCATCGATA 57.232 42.857 21.34 10.60 35.19 2.92
214 215 3.986996 TCCCATGTGATGCATCGATAT 57.013 42.857 21.34 12.34 35.19 1.63
215 216 5.419239 TTCCCATGTGATGCATCGATATA 57.581 39.130 21.34 3.38 35.19 0.86
216 217 5.619132 TCCCATGTGATGCATCGATATAT 57.381 39.130 21.34 5.64 35.19 0.86
217 218 5.993055 TCCCATGTGATGCATCGATATATT 58.007 37.500 21.34 0.00 35.19 1.28
218 219 7.123355 TCCCATGTGATGCATCGATATATTA 57.877 36.000 21.34 0.00 35.19 0.98
219 220 7.563906 TCCCATGTGATGCATCGATATATTAA 58.436 34.615 21.34 0.00 35.19 1.40
220 221 8.046107 TCCCATGTGATGCATCGATATATTAAA 58.954 33.333 21.34 0.00 35.19 1.52
221 222 8.843262 CCCATGTGATGCATCGATATATTAAAT 58.157 33.333 21.34 0.00 35.19 1.40
251 252 7.482474 CAAGAATTGCATGTATGTGTTATCCA 58.518 34.615 0.00 0.00 40.39 3.41
255 256 8.922931 AATTGCATGTATGTGTTATCCAGATA 57.077 30.769 0.00 0.00 0.00 1.98
302 304 4.786454 TCCTTTACCTGGCATTACCTAGTT 59.214 41.667 0.00 0.00 40.22 2.24
309 311 5.222048 ACCTGGCATTACCTAGTTCTTTCAA 60.222 40.000 0.00 0.00 40.22 2.69
310 312 5.123979 CCTGGCATTACCTAGTTCTTTCAAC 59.876 44.000 0.00 0.00 40.22 3.18
311 313 5.626142 TGGCATTACCTAGTTCTTTCAACA 58.374 37.500 0.00 0.00 40.22 3.33
324 351 7.869800 AGTTCTTTCAACACATTCTCTGATTC 58.130 34.615 0.00 0.00 0.00 2.52
342 369 9.814899 CTCTGATTCTGATTCAATAACACTACT 57.185 33.333 4.08 0.00 0.00 2.57
369 397 1.497286 AGGTAACAAGTGAAAGGGGCA 59.503 47.619 0.00 0.00 41.41 5.36
372 400 4.017499 AGGTAACAAGTGAAAGGGGCATAT 60.017 41.667 0.00 0.00 41.41 1.78
373 401 4.709886 GGTAACAAGTGAAAGGGGCATATT 59.290 41.667 0.00 0.00 0.00 1.28
377 405 5.025453 ACAAGTGAAAGGGGCATATTCAAT 58.975 37.500 0.57 0.00 35.07 2.57
378 406 5.127682 ACAAGTGAAAGGGGCATATTCAATC 59.872 40.000 0.57 0.00 35.07 2.67
379 407 5.134725 AGTGAAAGGGGCATATTCAATCT 57.865 39.130 0.57 0.00 35.07 2.40
380 408 4.891756 AGTGAAAGGGGCATATTCAATCTG 59.108 41.667 0.57 0.00 35.07 2.90
381 409 4.038402 GTGAAAGGGGCATATTCAATCTGG 59.962 45.833 0.57 0.00 35.07 3.86
382 410 2.299326 AGGGGCATATTCAATCTGGC 57.701 50.000 0.94 0.94 34.93 4.85
383 411 1.500303 AGGGGCATATTCAATCTGGCA 59.500 47.619 10.92 0.00 37.20 4.92
384 412 2.111255 AGGGGCATATTCAATCTGGCAT 59.889 45.455 10.92 0.00 37.20 4.40
385 413 2.494870 GGGGCATATTCAATCTGGCATC 59.505 50.000 10.92 0.25 37.20 3.91
386 414 2.163010 GGGCATATTCAATCTGGCATCG 59.837 50.000 10.92 0.00 37.20 3.84
387 415 2.415090 GGCATATTCAATCTGGCATCGC 60.415 50.000 4.60 0.00 35.68 4.58
398 426 4.496336 GCATCGCCCCAGCTTCCT 62.496 66.667 0.00 0.00 36.60 3.36
399 427 2.203126 CATCGCCCCAGCTTCCTC 60.203 66.667 0.00 0.00 36.60 3.71
400 428 2.366167 ATCGCCCCAGCTTCCTCT 60.366 61.111 0.00 0.00 36.60 3.69
401 429 2.439104 ATCGCCCCAGCTTCCTCTC 61.439 63.158 0.00 0.00 36.60 3.20
402 430 3.393970 CGCCCCAGCTTCCTCTCA 61.394 66.667 0.00 0.00 36.60 3.27
403 431 2.588989 GCCCCAGCTTCCTCTCAG 59.411 66.667 0.00 0.00 35.50 3.35
404 432 3.041469 GCCCCAGCTTCCTCTCAGG 62.041 68.421 0.00 0.00 34.19 3.86
405 433 1.306482 CCCCAGCTTCCTCTCAGGA 60.306 63.158 0.00 0.00 44.10 3.86
406 434 1.336632 CCCCAGCTTCCTCTCAGGAG 61.337 65.000 0.00 0.00 46.73 3.69
444 475 4.271049 CACTAGTATGCGATCAAAAGTGGG 59.729 45.833 0.00 0.00 31.64 4.61
461 492 1.505098 TGGGATCCCTGAGCTCAGATA 59.495 52.381 39.34 27.58 46.59 1.98
463 494 1.899142 GGATCCCTGAGCTCAGATACC 59.101 57.143 39.34 29.64 46.59 2.73
549 583 1.733399 GAACTCACACGCGGAGGTC 60.733 63.158 12.47 12.28 41.45 3.85
623 765 5.237048 CCAACCCAACCACATTTATTTCTG 58.763 41.667 0.00 0.00 0.00 3.02
821 1005 3.774528 CTGCCTGCGCTCCACCTA 61.775 66.667 9.73 0.00 35.36 3.08
866 1064 2.122056 ACCCACCTCCCGCTTACT 59.878 61.111 0.00 0.00 0.00 2.24
873 1075 3.315142 CTCCCGCTTACTGCAGCCA 62.315 63.158 15.27 0.00 43.06 4.75
905 1108 0.558220 TCCGATCTGATCCCACCTCT 59.442 55.000 11.84 0.00 0.00 3.69
948 1151 3.961414 AACCCCGACCAACCGCAT 61.961 61.111 0.00 0.00 0.00 4.73
978 1211 4.101448 CAAGCTAGCCGGCCCACT 62.101 66.667 26.15 15.40 0.00 4.00
1221 1462 2.266055 CTCCTCGCCAACCTCCAC 59.734 66.667 0.00 0.00 0.00 4.02
1728 2524 0.316841 GGCTCATCTCCATCGACCTC 59.683 60.000 0.00 0.00 0.00 3.85
1821 3671 3.793888 GCGGTGGGTTAGGGAGGG 61.794 72.222 0.00 0.00 0.00 4.30
1971 4040 1.406069 CCTGTAGACCCATGCTGTCAC 60.406 57.143 13.92 10.65 35.15 3.67
2005 4099 1.004277 GCTGCTGCTATACGCGTAGG 61.004 60.000 24.78 19.20 43.27 3.18
2033 4127 9.976511 TTATCCTCGAACATTAATAGTAGTTGG 57.023 33.333 0.00 0.00 0.00 3.77
2035 4129 7.844009 TCCTCGAACATTAATAGTAGTTGGTT 58.156 34.615 0.00 0.00 0.00 3.67
2054 4148 8.702819 AGTTGGTTTTAGGCTAGTTATAGTAGG 58.297 37.037 0.00 0.00 0.00 3.18
2077 4171 8.522542 AGGAGTAACTTAACTAGTACTCCATG 57.477 38.462 29.30 8.13 46.56 3.66
2078 4172 7.068470 AGGAGTAACTTAACTAGTACTCCATGC 59.932 40.741 29.30 12.27 46.56 4.06
2080 4174 8.130671 AGTAACTTAACTAGTACTCCATGCAA 57.869 34.615 0.00 0.00 35.54 4.08
2081 4175 8.033626 AGTAACTTAACTAGTACTCCATGCAAC 58.966 37.037 0.00 0.00 35.54 4.17
2082 4176 6.354794 ACTTAACTAGTACTCCATGCAACA 57.645 37.500 0.00 0.00 34.56 3.33
2087 4181 4.755123 ACTAGTACTCCATGCAACAACAAC 59.245 41.667 0.00 0.00 0.00 3.32
2088 4182 3.550820 AGTACTCCATGCAACAACAACA 58.449 40.909 0.00 0.00 0.00 3.33
2090 4184 3.883830 ACTCCATGCAACAACAACAAA 57.116 38.095 0.00 0.00 0.00 2.83
2129 4460 9.134055 AGTACTAGTAACATACTCCCATCTTTC 57.866 37.037 3.61 0.00 40.14 2.62
2323 4816 3.878699 GGTCAAGGTAACCTCGAAAAACA 59.121 43.478 0.00 0.00 33.78 2.83
2329 4822 7.662258 TCAAGGTAACCTCGAAAAACATATTGA 59.338 33.333 0.00 0.00 30.89 2.57
2350 4843 5.795079 TGAACCCTATATAGGTGGAAGGAA 58.205 41.667 24.31 2.50 42.03 3.36
2365 4858 3.431766 GGAAGGAAGGAGTAGCGCATTTA 60.432 47.826 11.47 0.00 0.00 1.40
2408 4903 5.060662 TGTCTTTAACGAGGAGAGATGTG 57.939 43.478 0.00 0.00 0.00 3.21
2415 4919 8.665643 TTTAACGAGGAGAGATGTGTTTAAAA 57.334 30.769 0.00 0.00 0.00 1.52
2514 5019 8.584063 TCTATGACACCACAACTATGTTACTA 57.416 34.615 0.00 0.00 37.82 1.82
2518 5023 7.320399 TGACACCACAACTATGTTACTATGAG 58.680 38.462 0.00 0.00 37.82 2.90
2519 5024 6.640518 ACACCACAACTATGTTACTATGAGG 58.359 40.000 0.00 0.00 37.82 3.86
2521 5026 5.724854 ACCACAACTATGTTACTATGAGGGT 59.275 40.000 0.00 0.00 37.82 4.34
2522 5027 6.049149 CCACAACTATGTTACTATGAGGGTG 58.951 44.000 0.00 0.00 37.82 4.61
2524 5029 5.425539 ACAACTATGTTACTATGAGGGTGCT 59.574 40.000 0.00 0.00 35.91 4.40
2525 5030 6.070194 ACAACTATGTTACTATGAGGGTGCTT 60.070 38.462 0.00 0.00 35.91 3.91
2529 5034 3.780294 TGTTACTATGAGGGTGCTTGGAT 59.220 43.478 0.00 0.00 0.00 3.41
2530 5035 4.966168 TGTTACTATGAGGGTGCTTGGATA 59.034 41.667 0.00 0.00 0.00 2.59
2531 5036 5.163343 TGTTACTATGAGGGTGCTTGGATAC 60.163 44.000 0.00 0.00 0.00 2.24
2533 5038 1.204146 ATGAGGGTGCTTGGATACGT 58.796 50.000 0.00 0.00 42.51 3.57
2536 5041 2.224670 TGAGGGTGCTTGGATACGTTTT 60.225 45.455 0.00 0.00 42.51 2.43
2538 5043 3.606687 AGGGTGCTTGGATACGTTTTAG 58.393 45.455 0.00 0.00 42.51 1.85
2539 5044 3.008704 AGGGTGCTTGGATACGTTTTAGT 59.991 43.478 0.00 0.00 42.51 2.24
2540 5045 3.373130 GGGTGCTTGGATACGTTTTAGTC 59.627 47.826 0.00 0.00 42.51 2.59
2541 5046 3.373130 GGTGCTTGGATACGTTTTAGTCC 59.627 47.826 0.00 0.00 42.51 3.85
2542 5047 3.373130 GTGCTTGGATACGTTTTAGTCCC 59.627 47.826 0.00 0.00 42.51 4.46
2544 5049 4.196971 GCTTGGATACGTTTTAGTCCCAT 58.803 43.478 0.00 0.00 42.51 4.00
2545 5050 4.035208 GCTTGGATACGTTTTAGTCCCATG 59.965 45.833 0.00 0.00 42.51 3.66
2547 5052 4.761975 TGGATACGTTTTAGTCCCATGAC 58.238 43.478 0.00 0.00 40.25 3.06
2561 5066 5.751586 GTCCCATGACTAAAAATAGTGGGA 58.248 41.667 6.15 6.15 37.44 4.37
2562 5067 5.589050 GTCCCATGACTAAAAATAGTGGGAC 59.411 44.000 20.89 20.89 45.42 4.46
2563 5068 5.491078 TCCCATGACTAAAAATAGTGGGACT 59.509 40.000 6.15 0.00 35.88 3.85
2564 5069 6.674861 TCCCATGACTAAAAATAGTGGGACTA 59.325 38.462 6.15 0.00 35.88 2.59
2565 5070 7.183112 TCCCATGACTAAAAATAGTGGGACTAA 59.817 37.037 6.15 0.00 35.88 2.24
2567 5072 9.238368 CCATGACTAAAAATAGTGGGACTAAAA 57.762 33.333 0.00 0.00 33.89 1.52
2572 5077 8.573885 ACTAAAAATAGTGGGACTAAAACTTGC 58.426 33.333 0.00 0.00 33.89 4.01
2573 5078 7.597288 AAAAATAGTGGGACTAAAACTTGCT 57.403 32.000 0.00 0.00 33.89 3.91
2574 5079 8.700439 AAAAATAGTGGGACTAAAACTTGCTA 57.300 30.769 0.00 0.00 33.89 3.49
2575 5080 7.923414 AAATAGTGGGACTAAAACTTGCTAG 57.077 36.000 0.00 0.00 33.89 3.42
2576 5081 3.676093 AGTGGGACTAAAACTTGCTAGC 58.324 45.455 8.10 8.10 0.00 3.42
2579 5084 3.271729 GGGACTAAAACTTGCTAGCCTC 58.728 50.000 13.29 0.00 0.00 4.70
2580 5085 3.307480 GGGACTAAAACTTGCTAGCCTCA 60.307 47.826 13.29 0.00 0.00 3.86
2582 5087 3.676093 ACTAAAACTTGCTAGCCTCACC 58.324 45.455 13.29 0.00 0.00 4.02
2584 5089 0.771127 AAACTTGCTAGCCTCACCCA 59.229 50.000 13.29 0.00 0.00 4.51
2585 5090 0.995024 AACTTGCTAGCCTCACCCAT 59.005 50.000 13.29 0.00 0.00 4.00
2586 5091 0.254178 ACTTGCTAGCCTCACCCATG 59.746 55.000 13.29 0.00 0.00 3.66
2587 5092 1.077501 TTGCTAGCCTCACCCATGC 60.078 57.895 13.29 0.00 0.00 4.06
2588 5093 1.565390 TTGCTAGCCTCACCCATGCT 61.565 55.000 13.29 0.00 39.10 3.79
2595 5100 1.972872 CCTCACCCATGCTTGGATAC 58.027 55.000 19.85 0.00 46.92 2.24
2596 5101 1.212688 CCTCACCCATGCTTGGATACA 59.787 52.381 19.85 0.49 46.92 2.29
2629 5134 7.964604 ATAGACTAAAATCGAGTTAATGGGC 57.035 36.000 0.00 0.00 0.00 5.36
2632 5137 6.828785 AGACTAAAATCGAGTTAATGGGCATT 59.171 34.615 0.00 0.00 34.93 3.56
2633 5138 7.339466 AGACTAAAATCGAGTTAATGGGCATTT 59.661 33.333 0.00 0.00 32.50 2.32
2634 5139 8.514330 ACTAAAATCGAGTTAATGGGCATTTA 57.486 30.769 0.00 0.00 32.50 1.40
2636 5141 9.965824 CTAAAATCGAGTTAATGGGCATTTATT 57.034 29.630 0.00 0.00 32.50 1.40
2640 5145 7.681939 TCGAGTTAATGGGCATTTATTATCC 57.318 36.000 0.00 0.00 32.50 2.59
2641 5146 7.458397 TCGAGTTAATGGGCATTTATTATCCT 58.542 34.615 0.00 0.00 32.50 3.24
2642 5147 7.942341 TCGAGTTAATGGGCATTTATTATCCTT 59.058 33.333 0.00 0.00 32.50 3.36
2643 5148 8.237267 CGAGTTAATGGGCATTTATTATCCTTC 58.763 37.037 0.00 0.00 32.50 3.46
2645 5150 9.432982 AGTTAATGGGCATTTATTATCCTTCAA 57.567 29.630 0.00 0.00 32.50 2.69
2648 5153 6.478512 TGGGCATTTATTATCCTTCAAACC 57.521 37.500 0.00 0.00 0.00 3.27
2649 5154 5.365314 TGGGCATTTATTATCCTTCAAACCC 59.635 40.000 0.00 0.00 0.00 4.11
2651 5156 6.239317 GGGCATTTATTATCCTTCAAACCCTC 60.239 42.308 0.00 0.00 0.00 4.30
2652 5157 6.239317 GGCATTTATTATCCTTCAAACCCTCC 60.239 42.308 0.00 0.00 0.00 4.30
2653 5158 6.323739 GCATTTATTATCCTTCAAACCCTCCA 59.676 38.462 0.00 0.00 0.00 3.86
2654 5159 7.147742 GCATTTATTATCCTTCAAACCCTCCAA 60.148 37.037 0.00 0.00 0.00 3.53
2657 5162 2.899303 TCCTTCAAACCCTCCAATCC 57.101 50.000 0.00 0.00 0.00 3.01
2658 5163 2.069775 TCCTTCAAACCCTCCAATCCA 58.930 47.619 0.00 0.00 0.00 3.41
2659 5164 2.041620 TCCTTCAAACCCTCCAATCCAG 59.958 50.000 0.00 0.00 0.00 3.86
2660 5165 2.041620 CCTTCAAACCCTCCAATCCAGA 59.958 50.000 0.00 0.00 0.00 3.86
2664 5169 3.084786 CAAACCCTCCAATCCAGAACTC 58.915 50.000 0.00 0.00 0.00 3.01
2666 5171 0.462759 CCCTCCAATCCAGAACTCGC 60.463 60.000 0.00 0.00 0.00 5.03
2667 5172 0.250234 CCTCCAATCCAGAACTCGCA 59.750 55.000 0.00 0.00 0.00 5.10
2669 5174 1.938577 CTCCAATCCAGAACTCGCATG 59.061 52.381 0.00 0.00 0.00 4.06
2670 5175 1.278985 TCCAATCCAGAACTCGCATGT 59.721 47.619 0.00 0.00 0.00 3.21
2671 5176 1.399440 CCAATCCAGAACTCGCATGTG 59.601 52.381 0.00 0.00 0.00 3.21
2672 5177 1.089920 AATCCAGAACTCGCATGTGC 58.910 50.000 0.00 0.00 37.78 4.57
2673 5178 0.251354 ATCCAGAACTCGCATGTGCT 59.749 50.000 0.00 0.00 39.32 4.40
2674 5179 0.894835 TCCAGAACTCGCATGTGCTA 59.105 50.000 0.00 0.00 39.32 3.49
2675 5180 1.002366 CCAGAACTCGCATGTGCTAC 58.998 55.000 0.00 0.00 39.32 3.58
2676 5181 1.672737 CCAGAACTCGCATGTGCTACA 60.673 52.381 0.00 0.00 39.32 2.74
2677 5182 1.657594 CAGAACTCGCATGTGCTACAG 59.342 52.381 0.00 0.00 39.32 2.74
2679 5184 0.608130 AACTCGCATGTGCTACAGGA 59.392 50.000 0.00 0.00 39.32 3.86
2680 5185 0.174389 ACTCGCATGTGCTACAGGAG 59.826 55.000 0.00 4.64 39.32 3.69
2682 5187 0.457443 TCGCATGTGCTACAGGAGAG 59.543 55.000 0.00 0.00 34.07 3.20
2683 5188 0.529337 CGCATGTGCTACAGGAGAGG 60.529 60.000 3.25 0.00 31.49 3.69
2684 5189 0.826715 GCATGTGCTACAGGAGAGGA 59.173 55.000 5.35 0.00 38.21 3.71
2685 5190 1.202510 GCATGTGCTACAGGAGAGGAG 60.203 57.143 5.35 0.00 38.21 3.69
2688 5193 1.895798 TGTGCTACAGGAGAGGAGTTG 59.104 52.381 0.00 0.00 0.00 3.16
2690 5195 2.563179 GTGCTACAGGAGAGGAGTTGAA 59.437 50.000 0.00 0.00 0.00 2.69
2691 5196 3.196685 GTGCTACAGGAGAGGAGTTGAAT 59.803 47.826 0.00 0.00 0.00 2.57
2693 5198 3.449018 GCTACAGGAGAGGAGTTGAATGA 59.551 47.826 0.00 0.00 0.00 2.57
2694 5199 4.441356 GCTACAGGAGAGGAGTTGAATGAG 60.441 50.000 0.00 0.00 0.00 2.90
2695 5200 2.836981 ACAGGAGAGGAGTTGAATGAGG 59.163 50.000 0.00 0.00 0.00 3.86
2696 5201 3.102972 CAGGAGAGGAGTTGAATGAGGA 58.897 50.000 0.00 0.00 0.00 3.71
2697 5202 3.132646 CAGGAGAGGAGTTGAATGAGGAG 59.867 52.174 0.00 0.00 0.00 3.69
2698 5203 3.012274 AGGAGAGGAGTTGAATGAGGAGA 59.988 47.826 0.00 0.00 0.00 3.71
2701 5206 4.280819 AGAGGAGTTGAATGAGGAGAGAG 58.719 47.826 0.00 0.00 0.00 3.20
2704 5209 3.384467 GGAGTTGAATGAGGAGAGAGAGG 59.616 52.174 0.00 0.00 0.00 3.69
2705 5210 4.277476 GAGTTGAATGAGGAGAGAGAGGA 58.723 47.826 0.00 0.00 0.00 3.71
2706 5211 4.023291 AGTTGAATGAGGAGAGAGAGGAC 58.977 47.826 0.00 0.00 0.00 3.85
2708 5213 5.044476 AGTTGAATGAGGAGAGAGAGGACTA 60.044 44.000 0.00 0.00 0.00 2.59
2711 5216 6.068010 TGAATGAGGAGAGAGAGGACTAATC 58.932 44.000 0.00 0.00 0.00 1.75
2712 5217 4.447138 TGAGGAGAGAGAGGACTAATCC 57.553 50.000 0.00 0.00 46.69 3.01
2728 5233 7.344134 GGACTAATCCACATTTTAGTAGGGTT 58.656 38.462 0.00 0.00 45.47 4.11
2729 5234 7.498239 GGACTAATCCACATTTTAGTAGGGTTC 59.502 40.741 0.00 0.00 45.47 3.62
2730 5235 7.344134 ACTAATCCACATTTTAGTAGGGTTCC 58.656 38.462 0.00 0.00 36.99 3.62
2731 5236 4.579647 TCCACATTTTAGTAGGGTTCCC 57.420 45.455 0.00 0.00 0.00 3.97
2732 5237 4.180723 TCCACATTTTAGTAGGGTTCCCT 58.819 43.478 15.19 15.19 40.06 4.20
2735 5240 5.515886 CCACATTTTAGTAGGGTTCCCTTGA 60.516 44.000 16.05 0.00 37.64 3.02
2738 5243 6.502863 ACATTTTAGTAGGGTTCCCTTGACTA 59.497 38.462 16.05 14.56 37.64 2.59
2739 5244 7.017850 ACATTTTAGTAGGGTTCCCTTGACTAA 59.982 37.037 20.63 20.63 36.37 2.24
2741 5246 7.578458 TTTAGTAGGGTTCCCTTGACTAAAT 57.422 36.000 26.19 10.07 39.64 1.40
2742 5247 7.578458 TTAGTAGGGTTCCCTTGACTAAATT 57.422 36.000 21.55 3.82 35.77 1.82
2744 5249 6.860034 AGTAGGGTTCCCTTGACTAAATTTT 58.140 36.000 16.05 0.00 37.64 1.82
2772 5277 5.190677 GTCTCAAGACTAGTTCTAGCCTCT 58.809 45.833 0.00 1.52 41.65 3.69
2773 5278 5.296035 GTCTCAAGACTAGTTCTAGCCTCTC 59.704 48.000 0.00 0.00 41.65 3.20
2774 5279 5.190925 TCTCAAGACTAGTTCTAGCCTCTCT 59.809 44.000 0.00 0.60 32.51 3.10
2775 5280 5.822204 TCAAGACTAGTTCTAGCCTCTCTT 58.178 41.667 0.00 5.91 32.51 2.85
2776 5281 6.249951 TCAAGACTAGTTCTAGCCTCTCTTT 58.750 40.000 0.00 0.00 32.51 2.52
2777 5282 7.403671 TCAAGACTAGTTCTAGCCTCTCTTTA 58.596 38.462 0.00 0.00 32.51 1.85
2778 5283 7.554835 TCAAGACTAGTTCTAGCCTCTCTTTAG 59.445 40.741 0.00 0.34 32.51 1.85
2779 5284 6.965607 AGACTAGTTCTAGCCTCTCTTTAGT 58.034 40.000 0.00 0.00 30.17 2.24
2780 5285 7.052248 AGACTAGTTCTAGCCTCTCTTTAGTC 58.948 42.308 0.00 0.00 36.42 2.59
2781 5286 6.723339 ACTAGTTCTAGCCTCTCTTTAGTCA 58.277 40.000 6.75 0.00 0.00 3.41
2782 5287 6.826741 ACTAGTTCTAGCCTCTCTTTAGTCAG 59.173 42.308 6.75 0.00 0.00 3.51
2783 5288 4.953579 AGTTCTAGCCTCTCTTTAGTCAGG 59.046 45.833 0.00 0.00 0.00 3.86
2786 5291 1.079658 AGCCTCTCTTTAGTCAGGGGT 59.920 52.381 0.00 0.00 0.00 4.95
2787 5292 1.208293 GCCTCTCTTTAGTCAGGGGTG 59.792 57.143 0.00 0.00 0.00 4.61
2788 5293 2.821437 CCTCTCTTTAGTCAGGGGTGA 58.179 52.381 0.00 0.00 0.00 4.02
2790 5295 3.777522 CCTCTCTTTAGTCAGGGGTGATT 59.222 47.826 0.00 0.00 0.00 2.57
2791 5296 4.383552 CCTCTCTTTAGTCAGGGGTGATTG 60.384 50.000 0.00 0.00 0.00 2.67
2792 5297 3.519510 TCTCTTTAGTCAGGGGTGATTGG 59.480 47.826 0.00 0.00 0.00 3.16
2794 5299 3.913799 TCTTTAGTCAGGGGTGATTGGAA 59.086 43.478 0.00 0.00 0.00 3.53
2795 5300 3.713826 TTAGTCAGGGGTGATTGGAAC 57.286 47.619 0.00 0.00 0.00 3.62
2799 5304 3.655777 AGTCAGGGGTGATTGGAACTTTA 59.344 43.478 0.00 0.00 0.00 1.85
2800 5305 4.010349 GTCAGGGGTGATTGGAACTTTAG 58.990 47.826 0.00 0.00 0.00 1.85
2801 5306 2.755103 CAGGGGTGATTGGAACTTTAGC 59.245 50.000 0.00 0.00 0.00 3.09
2802 5307 2.100197 GGGGTGATTGGAACTTTAGCC 58.900 52.381 0.00 0.00 0.00 3.93
2803 5308 2.291605 GGGGTGATTGGAACTTTAGCCT 60.292 50.000 0.00 0.00 0.00 4.58
2805 5310 3.308473 GGGTGATTGGAACTTTAGCCTCT 60.308 47.826 0.00 0.00 0.00 3.69
2808 5313 5.944007 GGTGATTGGAACTTTAGCCTCTAAA 59.056 40.000 0.00 0.00 0.00 1.85
2809 5314 6.433093 GGTGATTGGAACTTTAGCCTCTAAAA 59.567 38.462 1.38 0.00 0.00 1.52
2810 5315 7.039993 GGTGATTGGAACTTTAGCCTCTAAAAA 60.040 37.037 1.38 0.00 0.00 1.94
2845 5350 9.720769 TTTAGTCAGACTAAAAATAGTCCCTTG 57.279 33.333 26.93 5.29 44.84 3.61
2846 5351 6.712276 AGTCAGACTAAAAATAGTCCCTTGG 58.288 40.000 0.00 0.00 45.66 3.61
2847 5352 6.500751 AGTCAGACTAAAAATAGTCCCTTGGA 59.499 38.462 0.00 1.82 45.66 3.53
2848 5353 7.182930 AGTCAGACTAAAAATAGTCCCTTGGAT 59.817 37.037 0.00 0.00 45.66 3.41
2850 5355 8.047310 TCAGACTAAAAATAGTCCCTTGGATTC 58.953 37.037 11.35 0.00 45.66 2.52
2853 5358 8.678199 GACTAAAAATAGTCCCTTGGATTCAAG 58.322 37.037 6.78 6.78 41.63 3.02
2854 5359 5.921962 AAAATAGTCCCTTGGATTCAAGC 57.078 39.130 8.38 0.00 46.69 4.01
2855 5360 4.591321 AATAGTCCCTTGGATTCAAGCA 57.409 40.909 8.38 0.00 46.69 3.91
2857 5362 2.731572 AGTCCCTTGGATTCAAGCATG 58.268 47.619 8.38 0.00 46.69 4.06
2858 5363 1.135721 GTCCCTTGGATTCAAGCATGC 59.864 52.381 10.51 10.51 46.69 4.06
2862 5367 3.548770 CCTTGGATTCAAGCATGCTCTA 58.451 45.455 22.93 9.43 46.69 2.43
2863 5368 4.142790 CCTTGGATTCAAGCATGCTCTAT 58.857 43.478 22.93 14.33 46.69 1.98
2864 5369 4.023107 CCTTGGATTCAAGCATGCTCTATG 60.023 45.833 22.93 16.17 46.69 2.23
2867 5372 3.501445 GGATTCAAGCATGCTCTATGACC 59.499 47.826 22.93 15.01 39.21 4.02
2868 5373 3.632643 TTCAAGCATGCTCTATGACCA 57.367 42.857 22.93 4.41 39.21 4.02
2987 5786 4.673968 TGACTACACACCTGAGGAACTAT 58.326 43.478 4.99 0.00 41.55 2.12
2989 5788 6.250711 TGACTACACACCTGAGGAACTATAA 58.749 40.000 4.99 0.00 41.55 0.98
2990 5789 6.895756 TGACTACACACCTGAGGAACTATAAT 59.104 38.462 4.99 0.00 41.55 1.28
2991 5790 7.068348 TGACTACACACCTGAGGAACTATAATC 59.932 40.741 4.99 0.00 41.55 1.75
2992 5791 7.126733 ACTACACACCTGAGGAACTATAATCT 58.873 38.462 4.99 0.00 41.55 2.40
3116 5952 2.358939 ACGTGTACTGATCGAAACCC 57.641 50.000 0.00 0.00 0.00 4.11
3153 6001 1.446272 CTCGGGAGCGAGTGTTTCC 60.446 63.158 0.00 0.00 0.00 3.13
3204 6057 1.832167 GGCAGCCAGTGTTTCCCAA 60.832 57.895 6.55 0.00 0.00 4.12
3205 6058 1.187567 GGCAGCCAGTGTTTCCCAAT 61.188 55.000 6.55 0.00 0.00 3.16
3206 6059 1.544724 GCAGCCAGTGTTTCCCAATA 58.455 50.000 0.00 0.00 0.00 1.90
3247 6102 8.035984 GCACCTAAATTAAGGCTATAGGTAGAG 58.964 40.741 12.55 5.72 43.37 2.43
3380 6252 6.878923 TCCAATAAATCTCGTGTTGATGAGTT 59.121 34.615 0.00 0.00 36.68 3.01
3384 6261 1.691976 TCTCGTGTTGATGAGTTGGGT 59.308 47.619 0.00 0.00 36.68 4.51
3434 6311 0.235665 CGAATACGGATGCACATGCC 59.764 55.000 0.49 0.00 36.65 4.40
3472 7075 7.477945 AGTAGTAGTAGTAGGCATGTGTTTT 57.522 36.000 0.00 0.00 0.00 2.43
4458 9427 6.317391 AGTTAATTGATGGTTTGAGCTAGCTC 59.683 38.462 33.47 33.47 43.01 4.09
4521 9490 2.795329 CTGGGTGCCTCAGTTTGTTAT 58.205 47.619 0.00 0.00 0.00 1.89
4696 10262 2.732597 CGTTGGTACAGACTGCTCTAGC 60.733 54.545 1.25 0.00 42.39 3.42
4724 10290 4.150980 TGTTCAAAGCGTTTATAGGTGACG 59.849 41.667 0.00 0.00 39.61 4.35
4981 10949 4.868450 TTTCGATAAATTACACAGGCCG 57.132 40.909 0.00 0.00 0.00 6.13
5043 11011 4.325204 CGAATTGAGGATTGCACAAACATG 59.675 41.667 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.610174 GCTCACCTCATCCACTGTCA 59.390 55.000 0.00 0.00 0.00 3.58
3 4 0.738762 CACGCTCACCTCATCCACTG 60.739 60.000 0.00 0.00 0.00 3.66
5 6 2.103042 GCACGCTCACCTCATCCAC 61.103 63.158 0.00 0.00 0.00 4.02
8 9 1.520342 GGAGCACGCTCACCTCATC 60.520 63.158 20.02 0.00 44.40 2.92
9 10 1.954362 GAGGAGCACGCTCACCTCAT 61.954 60.000 20.02 0.00 45.53 2.90
10 11 2.601666 AGGAGCACGCTCACCTCA 60.602 61.111 20.02 0.00 44.40 3.86
11 12 2.183046 GAGGAGCACGCTCACCTC 59.817 66.667 20.02 14.76 44.40 3.85
12 13 2.283532 AGAGGAGCACGCTCACCT 60.284 61.111 20.02 9.99 44.40 4.00
13 14 2.183046 GAGAGGAGCACGCTCACC 59.817 66.667 20.02 10.83 44.40 4.02
14 15 1.645704 TACGAGAGGAGCACGCTCAC 61.646 60.000 20.02 13.00 45.16 3.51
15 16 1.376812 TACGAGAGGAGCACGCTCA 60.377 57.895 20.02 0.00 45.16 4.26
16 17 1.062845 GTACGAGAGGAGCACGCTC 59.937 63.158 10.65 10.65 41.94 5.03
17 18 1.370587 GAGTACGAGAGGAGCACGCT 61.371 60.000 0.00 0.00 33.70 5.07
18 19 1.062845 GAGTACGAGAGGAGCACGC 59.937 63.158 0.00 0.00 33.70 5.34
19 20 1.348938 CGAGTACGAGAGGAGCACG 59.651 63.158 0.00 0.00 42.66 5.34
20 21 1.062845 GCGAGTACGAGAGGAGCAC 59.937 63.158 0.00 0.00 42.66 4.40
21 22 2.113433 GGCGAGTACGAGAGGAGCA 61.113 63.158 0.00 0.00 42.66 4.26
22 23 2.716864 GGCGAGTACGAGAGGAGC 59.283 66.667 0.00 0.00 42.66 4.70
23 24 3.015677 CGGCGAGTACGAGAGGAG 58.984 66.667 0.00 0.00 42.66 3.69
24 25 3.200593 GCGGCGAGTACGAGAGGA 61.201 66.667 12.98 0.00 42.66 3.71
25 26 3.506096 TGCGGCGAGTACGAGAGG 61.506 66.667 12.98 0.00 42.66 3.69
26 27 2.277373 GTGCGGCGAGTACGAGAG 60.277 66.667 12.98 0.00 42.66 3.20
27 28 2.745100 AGTGCGGCGAGTACGAGA 60.745 61.111 12.98 0.00 40.57 4.04
28 29 2.577112 CAGTGCGGCGAGTACGAG 60.577 66.667 12.98 0.99 40.57 4.18
29 30 3.318539 GACAGTGCGGCGAGTACGA 62.319 63.158 12.98 0.00 40.57 3.43
30 31 2.874780 GACAGTGCGGCGAGTACG 60.875 66.667 12.98 5.51 40.57 3.67
31 32 1.801913 CTGACAGTGCGGCGAGTAC 60.802 63.158 12.98 6.13 35.57 2.73
32 33 1.923227 CTCTGACAGTGCGGCGAGTA 61.923 60.000 12.98 0.00 0.00 2.59
33 34 3.274455 CTCTGACAGTGCGGCGAGT 62.274 63.158 12.98 2.14 0.00 4.18
34 35 2.505777 CTCTGACAGTGCGGCGAG 60.506 66.667 12.98 0.00 0.00 5.03
35 36 4.056125 CCTCTGACAGTGCGGCGA 62.056 66.667 12.98 0.00 0.00 5.54
37 38 3.655810 CTCCCTCTGACAGTGCGGC 62.656 68.421 1.59 0.00 0.00 6.53
38 39 2.575993 CTCCCTCTGACAGTGCGG 59.424 66.667 1.59 4.32 0.00 5.69
39 40 2.575993 CCTCCCTCTGACAGTGCG 59.424 66.667 1.59 0.00 0.00 5.34
40 41 1.908340 ATGCCTCCCTCTGACAGTGC 61.908 60.000 1.59 0.00 0.00 4.40
41 42 0.177604 GATGCCTCCCTCTGACAGTG 59.822 60.000 1.59 0.00 0.00 3.66
42 43 0.252421 TGATGCCTCCCTCTGACAGT 60.252 55.000 1.59 0.00 0.00 3.55
43 44 0.907486 TTGATGCCTCCCTCTGACAG 59.093 55.000 0.00 0.00 0.00 3.51
44 45 1.280133 CTTTGATGCCTCCCTCTGACA 59.720 52.381 0.00 0.00 0.00 3.58
45 46 1.556911 TCTTTGATGCCTCCCTCTGAC 59.443 52.381 0.00 0.00 0.00 3.51
46 47 1.556911 GTCTTTGATGCCTCCCTCTGA 59.443 52.381 0.00 0.00 0.00 3.27
47 48 1.280133 TGTCTTTGATGCCTCCCTCTG 59.720 52.381 0.00 0.00 0.00 3.35
48 49 1.280421 GTGTCTTTGATGCCTCCCTCT 59.720 52.381 0.00 0.00 0.00 3.69
49 50 1.743996 GTGTCTTTGATGCCTCCCTC 58.256 55.000 0.00 0.00 0.00 4.30
50 51 0.036010 CGTGTCTTTGATGCCTCCCT 60.036 55.000 0.00 0.00 0.00 4.20
51 52 1.648467 GCGTGTCTTTGATGCCTCCC 61.648 60.000 0.00 0.00 0.00 4.30
52 53 1.648467 GGCGTGTCTTTGATGCCTCC 61.648 60.000 0.00 0.00 42.44 4.30
53 54 1.796796 GGCGTGTCTTTGATGCCTC 59.203 57.895 0.00 0.00 42.44 4.70
54 55 2.034879 CGGCGTGTCTTTGATGCCT 61.035 57.895 0.00 0.00 43.54 4.75
55 56 2.480555 CGGCGTGTCTTTGATGCC 59.519 61.111 0.00 0.00 42.29 4.40
56 57 2.202349 GCGGCGTGTCTTTGATGC 60.202 61.111 9.37 0.00 0.00 3.91
57 58 2.480555 GGCGGCGTGTCTTTGATG 59.519 61.111 9.37 0.00 0.00 3.07
58 59 3.118454 CGGCGGCGTGTCTTTGAT 61.118 61.111 24.74 0.00 0.00 2.57
83 84 0.168788 AGAAATTGCCGCACATGTCG 59.831 50.000 0.00 2.90 0.00 4.35
84 85 3.698029 ATAGAAATTGCCGCACATGTC 57.302 42.857 0.00 0.00 0.00 3.06
85 86 3.193267 ACAATAGAAATTGCCGCACATGT 59.807 39.130 0.00 0.00 45.41 3.21
86 87 3.772932 ACAATAGAAATTGCCGCACATG 58.227 40.909 0.00 0.00 45.41 3.21
87 88 4.640201 ACTACAATAGAAATTGCCGCACAT 59.360 37.500 0.00 0.00 45.41 3.21
88 89 4.006989 ACTACAATAGAAATTGCCGCACA 58.993 39.130 0.00 0.00 45.41 4.57
89 90 4.616181 ACTACAATAGAAATTGCCGCAC 57.384 40.909 0.00 0.00 45.41 5.34
90 91 6.288294 AGATACTACAATAGAAATTGCCGCA 58.712 36.000 0.00 0.00 45.41 5.69
91 92 6.787085 AGATACTACAATAGAAATTGCCGC 57.213 37.500 0.00 0.00 45.41 6.53
101 102 9.307121 GCATGGCAGTATAAGATACTACAATAG 57.693 37.037 0.00 0.00 0.00 1.73
102 103 8.811994 TGCATGGCAGTATAAGATACTACAATA 58.188 33.333 0.00 0.00 33.32 1.90
103 104 7.679783 TGCATGGCAGTATAAGATACTACAAT 58.320 34.615 0.00 0.00 33.32 2.71
104 105 7.061566 TGCATGGCAGTATAAGATACTACAA 57.938 36.000 0.00 0.00 33.32 2.41
105 106 6.664428 TGCATGGCAGTATAAGATACTACA 57.336 37.500 0.00 3.10 33.32 2.74
120 121 2.889617 GCATCTTGCTGCATGGCA 59.110 55.556 14.55 0.00 40.96 4.92
129 130 0.368227 CGTCGACAGAAGCATCTTGC 59.632 55.000 17.16 0.00 45.46 4.01
130 131 0.994995 CCGTCGACAGAAGCATCTTG 59.005 55.000 17.16 0.00 32.03 3.02
131 132 0.603569 ACCGTCGACAGAAGCATCTT 59.396 50.000 17.16 0.00 32.03 2.40
132 133 1.460504 TACCGTCGACAGAAGCATCT 58.539 50.000 17.16 0.00 35.88 2.90
133 134 2.493713 ATACCGTCGACAGAAGCATC 57.506 50.000 17.16 0.00 0.00 3.91
134 135 2.961526 AATACCGTCGACAGAAGCAT 57.038 45.000 17.16 0.00 0.00 3.79
135 136 5.700722 ATATAATACCGTCGACAGAAGCA 57.299 39.130 17.16 0.00 0.00 3.91
136 137 5.919141 ACAATATAATACCGTCGACAGAAGC 59.081 40.000 17.16 0.00 0.00 3.86
137 138 7.434307 ACAACAATATAATACCGTCGACAGAAG 59.566 37.037 17.16 3.34 0.00 2.85
138 139 7.221259 CACAACAATATAATACCGTCGACAGAA 59.779 37.037 17.16 0.00 0.00 3.02
139 140 6.693978 CACAACAATATAATACCGTCGACAGA 59.306 38.462 17.16 0.00 0.00 3.41
140 141 6.474427 ACACAACAATATAATACCGTCGACAG 59.526 38.462 17.16 6.83 0.00 3.51
141 142 6.253942 CACACAACAATATAATACCGTCGACA 59.746 38.462 17.16 0.00 0.00 4.35
142 143 6.254157 ACACACAACAATATAATACCGTCGAC 59.746 38.462 5.18 5.18 0.00 4.20
143 144 6.331845 ACACACAACAATATAATACCGTCGA 58.668 36.000 0.00 0.00 0.00 4.20
144 145 6.578020 ACACACAACAATATAATACCGTCG 57.422 37.500 0.00 0.00 0.00 5.12
145 146 6.685403 GCAACACACAACAATATAATACCGTC 59.315 38.462 0.00 0.00 0.00 4.79
146 147 6.403855 GGCAACACACAACAATATAATACCGT 60.404 38.462 0.00 0.00 0.00 4.83
147 148 5.968848 GGCAACACACAACAATATAATACCG 59.031 40.000 0.00 0.00 0.00 4.02
148 149 6.972328 CAGGCAACACACAACAATATAATACC 59.028 38.462 0.00 0.00 41.41 2.73
149 150 7.484641 CACAGGCAACACACAACAATATAATAC 59.515 37.037 0.00 0.00 41.41 1.89
150 151 7.391833 TCACAGGCAACACACAACAATATAATA 59.608 33.333 0.00 0.00 41.41 0.98
151 152 6.208402 TCACAGGCAACACACAACAATATAAT 59.792 34.615 0.00 0.00 41.41 1.28
152 153 5.532779 TCACAGGCAACACACAACAATATAA 59.467 36.000 0.00 0.00 41.41 0.98
153 154 5.066593 TCACAGGCAACACACAACAATATA 58.933 37.500 0.00 0.00 41.41 0.86
154 155 3.888323 TCACAGGCAACACACAACAATAT 59.112 39.130 0.00 0.00 41.41 1.28
155 156 3.282885 TCACAGGCAACACACAACAATA 58.717 40.909 0.00 0.00 41.41 1.90
156 157 2.098614 TCACAGGCAACACACAACAAT 58.901 42.857 0.00 0.00 41.41 2.71
157 158 1.539157 TCACAGGCAACACACAACAA 58.461 45.000 0.00 0.00 41.41 2.83
158 159 1.404748 CATCACAGGCAACACACAACA 59.595 47.619 0.00 0.00 41.41 3.33
159 160 1.405105 ACATCACAGGCAACACACAAC 59.595 47.619 0.00 0.00 41.41 3.32
160 161 1.675483 GACATCACAGGCAACACACAA 59.325 47.619 0.00 0.00 41.41 3.33
161 162 1.308047 GACATCACAGGCAACACACA 58.692 50.000 0.00 0.00 41.41 3.72
162 163 1.308047 TGACATCACAGGCAACACAC 58.692 50.000 0.00 0.00 41.41 3.82
163 164 2.275134 ATGACATCACAGGCAACACA 57.725 45.000 0.00 0.00 41.41 3.72
164 165 3.648339 AAATGACATCACAGGCAACAC 57.352 42.857 0.00 0.00 41.41 3.32
165 166 4.826733 ACTAAAATGACATCACAGGCAACA 59.173 37.500 0.00 0.00 41.41 3.33
166 167 5.376854 ACTAAAATGACATCACAGGCAAC 57.623 39.130 0.00 0.00 0.00 4.17
167 168 6.183360 ACAAACTAAAATGACATCACAGGCAA 60.183 34.615 0.00 0.00 0.00 4.52
168 169 5.301551 ACAAACTAAAATGACATCACAGGCA 59.698 36.000 0.00 0.00 0.00 4.75
169 170 5.772521 ACAAACTAAAATGACATCACAGGC 58.227 37.500 0.00 0.00 0.00 4.85
170 171 7.382218 GGAAACAAACTAAAATGACATCACAGG 59.618 37.037 0.00 0.00 0.00 4.00
171 172 7.382218 GGGAAACAAACTAAAATGACATCACAG 59.618 37.037 0.00 0.00 0.00 3.66
172 173 7.147828 TGGGAAACAAACTAAAATGACATCACA 60.148 33.333 0.00 0.00 0.00 3.58
173 174 7.206687 TGGGAAACAAACTAAAATGACATCAC 58.793 34.615 0.00 0.00 0.00 3.06
174 175 7.353414 TGGGAAACAAACTAAAATGACATCA 57.647 32.000 0.00 0.00 0.00 3.07
175 176 7.872483 ACATGGGAAACAAACTAAAATGACATC 59.128 33.333 0.00 0.00 0.00 3.06
176 177 7.656948 CACATGGGAAACAAACTAAAATGACAT 59.343 33.333 0.00 0.00 0.00 3.06
177 178 6.983307 CACATGGGAAACAAACTAAAATGACA 59.017 34.615 0.00 0.00 0.00 3.58
178 179 7.206687 TCACATGGGAAACAAACTAAAATGAC 58.793 34.615 0.00 0.00 0.00 3.06
179 180 7.353414 TCACATGGGAAACAAACTAAAATGA 57.647 32.000 0.00 0.00 0.00 2.57
180 181 7.360269 GCATCACATGGGAAACAAACTAAAATG 60.360 37.037 0.00 0.00 0.00 2.32
181 182 6.650390 GCATCACATGGGAAACAAACTAAAAT 59.350 34.615 0.00 0.00 0.00 1.82
182 183 5.988561 GCATCACATGGGAAACAAACTAAAA 59.011 36.000 0.00 0.00 0.00 1.52
183 184 5.069648 TGCATCACATGGGAAACAAACTAAA 59.930 36.000 0.00 0.00 0.00 1.85
184 185 4.586421 TGCATCACATGGGAAACAAACTAA 59.414 37.500 0.00 0.00 0.00 2.24
185 186 4.148079 TGCATCACATGGGAAACAAACTA 58.852 39.130 0.00 0.00 0.00 2.24
186 187 2.964464 TGCATCACATGGGAAACAAACT 59.036 40.909 0.00 0.00 0.00 2.66
187 188 3.383620 TGCATCACATGGGAAACAAAC 57.616 42.857 0.00 0.00 0.00 2.93
188 189 3.367190 CGATGCATCACATGGGAAACAAA 60.367 43.478 25.70 0.00 39.84 2.83
189 190 2.164017 CGATGCATCACATGGGAAACAA 59.836 45.455 25.70 0.00 39.84 2.83
190 191 1.744522 CGATGCATCACATGGGAAACA 59.255 47.619 25.70 3.35 39.84 2.83
191 192 2.016318 TCGATGCATCACATGGGAAAC 58.984 47.619 25.70 0.00 39.84 2.78
192 193 2.416680 TCGATGCATCACATGGGAAA 57.583 45.000 25.70 0.00 39.84 3.13
193 194 2.643995 ATCGATGCATCACATGGGAA 57.356 45.000 25.70 1.64 39.84 3.97
194 195 3.986996 ATATCGATGCATCACATGGGA 57.013 42.857 25.70 13.93 39.84 4.37
195 196 7.790823 TTAATATATCGATGCATCACATGGG 57.209 36.000 25.70 8.93 39.84 4.00
302 304 7.219322 TCAGAATCAGAGAATGTGTTGAAAGA 58.781 34.615 0.00 0.00 0.00 2.52
309 311 9.676861 TTATTGAATCAGAATCAGAGAATGTGT 57.323 29.630 0.00 0.00 0.00 3.72
310 312 9.932699 GTTATTGAATCAGAATCAGAGAATGTG 57.067 33.333 0.00 0.00 0.00 3.21
311 313 9.676861 TGTTATTGAATCAGAATCAGAGAATGT 57.323 29.630 0.00 0.00 0.00 2.71
342 369 7.776500 GCCCCTTTCACTTGTTACCTATATTAA 59.224 37.037 0.00 0.00 0.00 1.40
343 370 7.092354 TGCCCCTTTCACTTGTTACCTATATTA 60.092 37.037 0.00 0.00 0.00 0.98
355 382 5.361857 AGATTGAATATGCCCCTTTCACTTG 59.638 40.000 0.00 0.00 0.00 3.16
381 409 4.496336 AGGAAGCTGGGGCGATGC 62.496 66.667 0.00 0.00 44.37 3.91
382 410 2.203126 GAGGAAGCTGGGGCGATG 60.203 66.667 0.00 0.00 44.37 3.84
383 411 2.366167 AGAGGAAGCTGGGGCGAT 60.366 61.111 0.00 0.00 44.37 4.58
384 412 3.077556 GAGAGGAAGCTGGGGCGA 61.078 66.667 0.00 0.00 44.37 5.54
385 413 3.382803 CTGAGAGGAAGCTGGGGCG 62.383 68.421 0.00 0.00 44.37 6.13
386 414 2.588989 CTGAGAGGAAGCTGGGGC 59.411 66.667 0.00 0.00 39.06 5.80
387 415 1.306482 TCCTGAGAGGAAGCTGGGG 60.306 63.158 0.00 0.00 42.51 4.96
388 416 2.210424 CTCCTGAGAGGAAGCTGGG 58.790 63.158 0.00 0.00 45.28 4.45
408 436 4.690719 TAGTGGTTGGGGCGTGCG 62.691 66.667 0.00 0.00 0.00 5.34
411 439 0.539986 CATACTAGTGGTTGGGGCGT 59.460 55.000 5.39 0.00 0.00 5.68
444 475 2.562298 CTGGTATCTGAGCTCAGGGATC 59.438 54.545 36.92 26.48 43.91 3.36
461 492 1.003355 CCTGCATCGTTGACCTGGT 60.003 57.895 0.00 0.00 0.00 4.00
463 494 0.742281 CTCCCTGCATCGTTGACCTG 60.742 60.000 0.00 0.00 0.00 4.00
486 517 9.907576 CTCTTTTCTTCATTATTATGACACGAC 57.092 33.333 0.00 0.00 40.42 4.34
539 573 0.254178 TCCTACTAAGACCTCCGCGT 59.746 55.000 4.92 0.00 0.00 6.01
549 583 2.097142 ACGCGTACTGCTTCCTACTAAG 59.903 50.000 11.67 0.00 43.27 2.18
640 782 7.519927 GGGGTTGTGTAAATATGGTTAGGATA 58.480 38.462 0.00 0.00 0.00 2.59
645 814 4.525024 CCGGGGTTGTGTAAATATGGTTA 58.475 43.478 0.00 0.00 0.00 2.85
821 1005 1.407979 CCGGAGCTACCATTAAGACGT 59.592 52.381 0.00 0.00 38.90 4.34
866 1064 4.191544 GGAAGCGATATATATTGGCTGCA 58.808 43.478 20.74 0.00 33.58 4.41
873 1075 7.309499 GGGATCAGATCGGAAGCGATATATATT 60.309 40.741 0.00 0.00 0.00 1.28
893 1095 2.707791 GGATGAATGAGAGGTGGGATCA 59.292 50.000 0.00 0.00 0.00 2.92
905 1108 2.039746 AGTGTTTGTCCGGGATGAATGA 59.960 45.455 0.00 0.00 0.00 2.57
1040 1281 3.869272 CCTGACGCTTGCCATCGC 61.869 66.667 0.00 0.00 0.00 4.58
1041 1282 3.197790 CCCTGACGCTTGCCATCG 61.198 66.667 0.00 0.00 0.00 3.84
1042 1283 2.109126 GTCCCTGACGCTTGCCATC 61.109 63.158 0.00 0.00 0.00 3.51
1221 1462 2.752238 ACGAGGGAGACAGCGAGG 60.752 66.667 0.00 0.00 33.42 4.63
1821 3671 4.664677 ACACCTGCGGTCGCTCAC 62.665 66.667 16.36 0.00 42.51 3.51
1947 4016 1.278985 CAGCATGGGTCTACAGGACAA 59.721 52.381 0.00 0.00 46.16 3.18
1954 4023 0.460284 CGGTGACAGCATGGGTCTAC 60.460 60.000 5.35 0.00 43.62 2.59
1957 4026 1.741770 GACGGTGACAGCATGGGTC 60.742 63.158 5.35 0.32 43.62 4.46
1971 4040 1.133253 CAGCAGCGAATGTTGACGG 59.867 57.895 0.00 0.00 42.36 4.79
2028 4122 8.702819 CCTACTATAACTAGCCTAAAACCAACT 58.297 37.037 0.00 0.00 0.00 3.16
2052 4146 7.068470 GCATGGAGTACTAGTTAAGTTACTCCT 59.932 40.741 28.28 17.41 46.31 3.69
2053 4147 7.147949 TGCATGGAGTACTAGTTAAGTTACTCC 60.148 40.741 24.44 24.44 46.33 3.85
2054 4148 7.769220 TGCATGGAGTACTAGTTAAGTTACTC 58.231 38.462 0.00 6.69 39.80 2.59
2059 4153 6.354794 TGTTGCATGGAGTACTAGTTAAGT 57.645 37.500 0.00 0.00 42.62 2.24
2068 4162 3.980646 TGTTGTTGTTGCATGGAGTAC 57.019 42.857 0.00 0.00 0.00 2.73
2101 4195 9.796180 AAGATGGGAGTATGTTACTAGTACTAG 57.204 37.037 25.30 25.30 39.59 2.57
2104 4198 8.910944 TGAAAGATGGGAGTATGTTACTAGTAC 58.089 37.037 0.91 0.00 39.59 2.73
2105 4199 9.656323 ATGAAAGATGGGAGTATGTTACTAGTA 57.344 33.333 0.00 0.00 39.59 1.82
2135 4466 8.768397 CCTCAAATACATATTAGGCCCTGTATA 58.232 37.037 0.00 0.00 34.56 1.47
2154 4485 3.806949 TGGTCAAAGGCTACCTCAAAT 57.193 42.857 6.50 0.00 36.67 2.32
2243 4575 6.343716 ACACAAAGCATACCATTGAATTCA 57.656 33.333 3.38 3.38 0.00 2.57
2249 4581 5.289193 GCATGTTACACAAAGCATACCATTG 59.711 40.000 0.00 0.00 34.62 2.82
2340 4833 0.175989 CGCTACTCCTTCCTTCCACC 59.824 60.000 0.00 0.00 0.00 4.61
2381 4876 2.832129 TCTCCTCGTTAAAGACATGCCT 59.168 45.455 0.00 0.00 0.00 4.75
2389 4884 7.884816 TTAAACACATCTCTCCTCGTTAAAG 57.115 36.000 0.00 0.00 0.00 1.85
2432 4936 7.682261 TTCTTTTGAAAAGCGCTATTGGTACAA 60.682 33.333 12.05 8.07 38.60 2.41
2437 4941 4.981674 TGTTCTTTTGAAAAGCGCTATTGG 59.018 37.500 12.05 0.00 40.53 3.16
2439 4943 5.587289 TGTGTTCTTTTGAAAAGCGCTATT 58.413 33.333 12.05 4.48 40.53 1.73
2514 5019 1.204146 ACGTATCCAAGCACCCTCAT 58.796 50.000 0.00 0.00 0.00 2.90
2518 5023 3.340928 ACTAAAACGTATCCAAGCACCC 58.659 45.455 0.00 0.00 0.00 4.61
2519 5024 3.373130 GGACTAAAACGTATCCAAGCACC 59.627 47.826 0.00 0.00 0.00 5.01
2521 5026 3.008157 TGGGACTAAAACGTATCCAAGCA 59.992 43.478 0.00 0.00 32.45 3.91
2522 5027 3.602483 TGGGACTAAAACGTATCCAAGC 58.398 45.455 0.00 0.00 32.45 4.01
2524 5029 5.180271 GTCATGGGACTAAAACGTATCCAA 58.820 41.667 0.00 0.00 40.99 3.53
2525 5030 4.761975 GTCATGGGACTAAAACGTATCCA 58.238 43.478 0.00 0.00 40.99 3.41
2538 5043 5.589050 GTCCCACTATTTTTAGTCATGGGAC 59.411 44.000 20.52 20.52 45.42 4.46
2539 5044 5.491078 AGTCCCACTATTTTTAGTCATGGGA 59.509 40.000 4.97 4.97 37.44 4.37
2540 5045 5.755849 AGTCCCACTATTTTTAGTCATGGG 58.244 41.667 0.00 0.00 34.08 4.00
2541 5046 8.801882 TTTAGTCCCACTATTTTTAGTCATGG 57.198 34.615 0.00 0.00 29.64 3.66
2544 5049 9.856162 AAGTTTTAGTCCCACTATTTTTAGTCA 57.144 29.630 0.00 0.00 29.64 3.41
2547 5052 8.793592 AGCAAGTTTTAGTCCCACTATTTTTAG 58.206 33.333 0.00 0.00 29.64 1.85
2551 5056 6.374613 GCTAGCAAGTTTTAGTCCCACTATTT 59.625 38.462 10.63 0.00 29.64 1.40
2552 5057 5.880887 GCTAGCAAGTTTTAGTCCCACTATT 59.119 40.000 10.63 0.00 29.64 1.73
2553 5058 5.429130 GCTAGCAAGTTTTAGTCCCACTAT 58.571 41.667 10.63 0.00 29.64 2.12
2554 5059 4.323257 GGCTAGCAAGTTTTAGTCCCACTA 60.323 45.833 18.24 0.00 0.00 2.74
2555 5060 3.559384 GGCTAGCAAGTTTTAGTCCCACT 60.559 47.826 18.24 0.00 0.00 4.00
2556 5061 2.747989 GGCTAGCAAGTTTTAGTCCCAC 59.252 50.000 18.24 0.00 0.00 4.61
2557 5062 2.642807 AGGCTAGCAAGTTTTAGTCCCA 59.357 45.455 18.24 0.00 0.00 4.37
2558 5063 3.271729 GAGGCTAGCAAGTTTTAGTCCC 58.728 50.000 18.24 0.00 0.00 4.46
2559 5064 3.685272 GTGAGGCTAGCAAGTTTTAGTCC 59.315 47.826 18.24 0.00 0.00 3.85
2561 5066 3.559384 GGGTGAGGCTAGCAAGTTTTAGT 60.559 47.826 18.24 0.00 0.00 2.24
2562 5067 3.010420 GGGTGAGGCTAGCAAGTTTTAG 58.990 50.000 18.24 0.00 0.00 1.85
2563 5068 2.373836 TGGGTGAGGCTAGCAAGTTTTA 59.626 45.455 18.24 0.00 0.00 1.52
2564 5069 1.144913 TGGGTGAGGCTAGCAAGTTTT 59.855 47.619 18.24 0.00 0.00 2.43
2565 5070 0.771127 TGGGTGAGGCTAGCAAGTTT 59.229 50.000 18.24 0.00 0.00 2.66
2567 5072 0.254178 CATGGGTGAGGCTAGCAAGT 59.746 55.000 18.24 0.00 0.00 3.16
2568 5073 1.099879 GCATGGGTGAGGCTAGCAAG 61.100 60.000 18.24 0.00 0.00 4.01
2569 5074 1.077501 GCATGGGTGAGGCTAGCAA 60.078 57.895 18.24 0.00 0.00 3.91
2571 5076 1.099879 CAAGCATGGGTGAGGCTAGC 61.100 60.000 6.04 6.04 42.15 3.42
2572 5077 0.465097 CCAAGCATGGGTGAGGCTAG 60.465 60.000 0.00 0.00 42.15 3.42
2573 5078 0.913934 TCCAAGCATGGGTGAGGCTA 60.914 55.000 8.36 0.00 42.15 3.93
2574 5079 1.578215 ATCCAAGCATGGGTGAGGCT 61.578 55.000 8.36 0.00 45.93 4.58
2603 5108 8.837389 GCCCATTAACTCGATTTTAGTCTATTT 58.163 33.333 0.00 0.00 0.00 1.40
2604 5109 7.990886 TGCCCATTAACTCGATTTTAGTCTATT 59.009 33.333 0.00 0.00 0.00 1.73
2605 5110 7.506114 TGCCCATTAACTCGATTTTAGTCTAT 58.494 34.615 0.00 0.00 0.00 1.98
2606 5111 6.880484 TGCCCATTAACTCGATTTTAGTCTA 58.120 36.000 0.00 0.00 0.00 2.59
2607 5112 5.741011 TGCCCATTAACTCGATTTTAGTCT 58.259 37.500 0.00 0.00 0.00 3.24
2608 5113 6.619801 ATGCCCATTAACTCGATTTTAGTC 57.380 37.500 0.00 0.00 0.00 2.59
2610 5115 9.965824 AATAAATGCCCATTAACTCGATTTTAG 57.034 29.630 0.00 0.00 0.00 1.85
2615 5120 8.109634 AGGATAATAAATGCCCATTAACTCGAT 58.890 33.333 0.00 0.00 0.00 3.59
2616 5121 7.458397 AGGATAATAAATGCCCATTAACTCGA 58.542 34.615 0.00 0.00 0.00 4.04
2617 5122 7.687941 AGGATAATAAATGCCCATTAACTCG 57.312 36.000 0.00 0.00 0.00 4.18
2618 5123 9.077885 TGAAGGATAATAAATGCCCATTAACTC 57.922 33.333 0.00 0.00 0.00 3.01
2622 5127 8.646900 GGTTTGAAGGATAATAAATGCCCATTA 58.353 33.333 0.00 0.00 0.00 1.90
2623 5128 7.420097 GGGTTTGAAGGATAATAAATGCCCATT 60.420 37.037 0.00 0.00 0.00 3.16
2624 5129 6.043127 GGGTTTGAAGGATAATAAATGCCCAT 59.957 38.462 0.00 0.00 0.00 4.00
2626 5131 5.602561 AGGGTTTGAAGGATAATAAATGCCC 59.397 40.000 0.00 0.00 0.00 5.36
2627 5132 6.239317 GGAGGGTTTGAAGGATAATAAATGCC 60.239 42.308 0.00 0.00 0.00 4.40
2628 5133 6.323739 TGGAGGGTTTGAAGGATAATAAATGC 59.676 38.462 0.00 0.00 0.00 3.56
2629 5134 7.896383 TGGAGGGTTTGAAGGATAATAAATG 57.104 36.000 0.00 0.00 0.00 2.32
2632 5137 7.066781 GGATTGGAGGGTTTGAAGGATAATAA 58.933 38.462 0.00 0.00 0.00 1.40
2633 5138 6.161348 TGGATTGGAGGGTTTGAAGGATAATA 59.839 38.462 0.00 0.00 0.00 0.98
2634 5139 5.043432 TGGATTGGAGGGTTTGAAGGATAAT 60.043 40.000 0.00 0.00 0.00 1.28
2636 5141 3.855599 TGGATTGGAGGGTTTGAAGGATA 59.144 43.478 0.00 0.00 0.00 2.59
2638 5143 2.041620 CTGGATTGGAGGGTTTGAAGGA 59.958 50.000 0.00 0.00 0.00 3.36
2639 5144 2.041620 TCTGGATTGGAGGGTTTGAAGG 59.958 50.000 0.00 0.00 0.00 3.46
2640 5145 3.439857 TCTGGATTGGAGGGTTTGAAG 57.560 47.619 0.00 0.00 0.00 3.02
2641 5146 3.140144 AGTTCTGGATTGGAGGGTTTGAA 59.860 43.478 0.00 0.00 0.00 2.69
2642 5147 2.716424 AGTTCTGGATTGGAGGGTTTGA 59.284 45.455 0.00 0.00 0.00 2.69
2643 5148 3.084786 GAGTTCTGGATTGGAGGGTTTG 58.915 50.000 0.00 0.00 0.00 2.93
2645 5150 1.279271 CGAGTTCTGGATTGGAGGGTT 59.721 52.381 0.00 0.00 0.00 4.11
2646 5151 0.905357 CGAGTTCTGGATTGGAGGGT 59.095 55.000 0.00 0.00 0.00 4.34
2648 5153 0.250234 TGCGAGTTCTGGATTGGAGG 59.750 55.000 0.00 0.00 0.00 4.30
2649 5154 1.938577 CATGCGAGTTCTGGATTGGAG 59.061 52.381 0.00 0.00 0.00 3.86
2651 5156 1.399440 CACATGCGAGTTCTGGATTGG 59.601 52.381 0.00 0.00 0.00 3.16
2652 5157 1.202110 GCACATGCGAGTTCTGGATTG 60.202 52.381 0.00 0.00 0.00 2.67
2653 5158 1.089920 GCACATGCGAGTTCTGGATT 58.910 50.000 0.00 0.00 0.00 3.01
2654 5159 2.772739 GCACATGCGAGTTCTGGAT 58.227 52.632 0.00 0.00 0.00 3.41
2666 5171 2.106566 ACTCCTCTCCTGTAGCACATG 58.893 52.381 0.00 0.00 0.00 3.21
2667 5172 2.499289 CAACTCCTCTCCTGTAGCACAT 59.501 50.000 0.00 0.00 0.00 3.21
2669 5174 2.171840 TCAACTCCTCTCCTGTAGCAC 58.828 52.381 0.00 0.00 0.00 4.40
2670 5175 2.604912 TCAACTCCTCTCCTGTAGCA 57.395 50.000 0.00 0.00 0.00 3.49
2671 5176 3.449018 TCATTCAACTCCTCTCCTGTAGC 59.551 47.826 0.00 0.00 0.00 3.58
2672 5177 4.099266 CCTCATTCAACTCCTCTCCTGTAG 59.901 50.000 0.00 0.00 0.00 2.74
2673 5178 4.026744 CCTCATTCAACTCCTCTCCTGTA 58.973 47.826 0.00 0.00 0.00 2.74
2674 5179 2.836981 CCTCATTCAACTCCTCTCCTGT 59.163 50.000 0.00 0.00 0.00 4.00
2675 5180 3.102972 TCCTCATTCAACTCCTCTCCTG 58.897 50.000 0.00 0.00 0.00 3.86
2676 5181 3.012274 TCTCCTCATTCAACTCCTCTCCT 59.988 47.826 0.00 0.00 0.00 3.69
2677 5182 3.370104 TCTCCTCATTCAACTCCTCTCC 58.630 50.000 0.00 0.00 0.00 3.71
2679 5184 4.017591 TCTCTCTCCTCATTCAACTCCTCT 60.018 45.833 0.00 0.00 0.00 3.69
2680 5185 4.277476 TCTCTCTCCTCATTCAACTCCTC 58.723 47.826 0.00 0.00 0.00 3.71
2682 5187 3.384467 CCTCTCTCTCCTCATTCAACTCC 59.616 52.174 0.00 0.00 0.00 3.85
2683 5188 4.097892 GTCCTCTCTCTCCTCATTCAACTC 59.902 50.000 0.00 0.00 0.00 3.01
2684 5189 4.023291 GTCCTCTCTCTCCTCATTCAACT 58.977 47.826 0.00 0.00 0.00 3.16
2685 5190 4.023291 AGTCCTCTCTCTCCTCATTCAAC 58.977 47.826 0.00 0.00 0.00 3.18
2688 5193 5.476945 GGATTAGTCCTCTCTCTCCTCATTC 59.523 48.000 0.00 0.00 41.60 2.67
2690 5195 4.418526 TGGATTAGTCCTCTCTCTCCTCAT 59.581 45.833 5.79 0.00 45.32 2.90
2691 5196 3.788708 TGGATTAGTCCTCTCTCTCCTCA 59.211 47.826 5.79 0.00 45.32 3.86
2693 5198 3.529734 TGTGGATTAGTCCTCTCTCTCCT 59.470 47.826 5.79 0.00 45.32 3.69
2694 5199 3.904717 TGTGGATTAGTCCTCTCTCTCC 58.095 50.000 5.79 0.00 45.32 3.71
2695 5200 6.478512 AAATGTGGATTAGTCCTCTCTCTC 57.521 41.667 5.79 0.00 45.32 3.20
2696 5201 6.882768 AAAATGTGGATTAGTCCTCTCTCT 57.117 37.500 5.79 0.00 45.32 3.10
2697 5202 7.787028 ACTAAAATGTGGATTAGTCCTCTCTC 58.213 38.462 5.79 0.00 45.32 3.20
2698 5203 7.741554 ACTAAAATGTGGATTAGTCCTCTCT 57.258 36.000 5.79 0.00 45.32 3.10
2701 5206 7.147532 ACCCTACTAAAATGTGGATTAGTCCTC 60.148 40.741 5.79 2.58 45.32 3.71
2704 5209 7.498239 GGAACCCTACTAAAATGTGGATTAGTC 59.502 40.741 1.78 0.00 40.53 2.59
2705 5210 7.344134 GGAACCCTACTAAAATGTGGATTAGT 58.656 38.462 3.93 3.93 43.05 2.24
2706 5211 7.803279 GGAACCCTACTAAAATGTGGATTAG 57.197 40.000 0.00 0.00 35.67 1.73
2756 5261 6.824704 TGACTAAAGAGAGGCTAGAACTAGTC 59.175 42.308 14.17 14.17 38.03 2.59
2757 5262 6.723339 TGACTAAAGAGAGGCTAGAACTAGT 58.277 40.000 10.03 0.00 35.65 2.57
2758 5263 6.262273 CCTGACTAAAGAGAGGCTAGAACTAG 59.738 46.154 0.00 4.67 36.29 2.57
2759 5264 6.123651 CCTGACTAAAGAGAGGCTAGAACTA 58.876 44.000 0.00 0.00 0.00 2.24
2761 5266 4.098807 CCCTGACTAAAGAGAGGCTAGAAC 59.901 50.000 0.00 0.00 0.00 3.01
2763 5268 3.373220 CCCCTGACTAAAGAGAGGCTAGA 60.373 52.174 0.00 0.00 0.00 2.43
2764 5269 2.962421 CCCCTGACTAAAGAGAGGCTAG 59.038 54.545 0.00 0.00 0.00 3.42
2766 5271 1.079658 ACCCCTGACTAAAGAGAGGCT 59.920 52.381 0.00 0.00 0.00 4.58
2767 5272 1.208293 CACCCCTGACTAAAGAGAGGC 59.792 57.143 0.00 0.00 0.00 4.70
2768 5273 2.821437 TCACCCCTGACTAAAGAGAGG 58.179 52.381 0.00 0.00 0.00 3.69
2769 5274 4.383552 CCAATCACCCCTGACTAAAGAGAG 60.384 50.000 0.00 0.00 0.00 3.20
2772 5277 3.526899 TCCAATCACCCCTGACTAAAGA 58.473 45.455 0.00 0.00 0.00 2.52
2773 5278 4.010349 GTTCCAATCACCCCTGACTAAAG 58.990 47.826 0.00 0.00 0.00 1.85
2774 5279 3.655777 AGTTCCAATCACCCCTGACTAAA 59.344 43.478 0.00 0.00 0.00 1.85
2775 5280 3.256704 AGTTCCAATCACCCCTGACTAA 58.743 45.455 0.00 0.00 0.00 2.24
2776 5281 2.915869 AGTTCCAATCACCCCTGACTA 58.084 47.619 0.00 0.00 0.00 2.59
2777 5282 1.747444 AGTTCCAATCACCCCTGACT 58.253 50.000 0.00 0.00 0.00 3.41
2778 5283 2.586648 AAGTTCCAATCACCCCTGAC 57.413 50.000 0.00 0.00 0.00 3.51
2779 5284 3.561313 GCTAAAGTTCCAATCACCCCTGA 60.561 47.826 0.00 0.00 0.00 3.86
2780 5285 2.755103 GCTAAAGTTCCAATCACCCCTG 59.245 50.000 0.00 0.00 0.00 4.45
2781 5286 2.291605 GGCTAAAGTTCCAATCACCCCT 60.292 50.000 0.00 0.00 0.00 4.79
2782 5287 2.100197 GGCTAAAGTTCCAATCACCCC 58.900 52.381 0.00 0.00 0.00 4.95
2783 5288 3.017442 GAGGCTAAAGTTCCAATCACCC 58.983 50.000 0.00 0.00 0.00 4.61
2819 5324 9.720769 CAAGGGACTATTTTTAGTCTGACTAAA 57.279 33.333 29.65 29.65 42.90 1.85
2821 5326 7.676893 TCCAAGGGACTATTTTTAGTCTGACTA 59.323 37.037 13.34 13.34 44.35 2.59
2823 5328 6.708285 TCCAAGGGACTATTTTTAGTCTGAC 58.292 40.000 11.69 0.00 44.35 3.51
2825 5330 7.829211 TGAATCCAAGGGACTATTTTTAGTCTG 59.171 37.037 11.69 4.29 44.35 3.51
2827 5332 8.575649 TTGAATCCAAGGGACTATTTTTAGTC 57.424 34.615 4.87 4.87 44.23 2.59
2828 5333 8.581253 CTTGAATCCAAGGGACTATTTTTAGT 57.419 34.615 0.00 0.00 44.58 2.24
2845 5350 3.501445 GGTCATAGAGCATGCTTGAATCC 59.499 47.826 23.61 15.35 34.35 3.01
2846 5351 4.132336 TGGTCATAGAGCATGCTTGAATC 58.868 43.478 23.61 16.19 35.04 2.52
2847 5352 4.135306 CTGGTCATAGAGCATGCTTGAAT 58.865 43.478 23.61 12.72 39.36 2.57
2848 5353 3.538591 CTGGTCATAGAGCATGCTTGAA 58.461 45.455 23.61 10.83 39.36 2.69
2850 5355 1.602851 GCTGGTCATAGAGCATGCTTG 59.397 52.381 23.61 16.55 39.36 4.01
2853 5358 0.108207 AGGCTGGTCATAGAGCATGC 59.892 55.000 10.51 10.51 39.36 4.06
2854 5359 2.634815 AAGGCTGGTCATAGAGCATG 57.365 50.000 0.00 0.00 39.36 4.06
2855 5360 2.636893 CCTAAGGCTGGTCATAGAGCAT 59.363 50.000 0.00 0.00 39.36 3.79
2857 5362 2.043227 ACCTAAGGCTGGTCATAGAGC 58.957 52.381 0.00 0.00 31.03 4.09
2858 5363 7.726033 ATAATACCTAAGGCTGGTCATAGAG 57.274 40.000 0.00 0.00 38.88 2.43
2862 5367 6.911308 ACAAATAATACCTAAGGCTGGTCAT 58.089 36.000 0.00 0.00 38.88 3.06
2863 5368 6.321821 ACAAATAATACCTAAGGCTGGTCA 57.678 37.500 0.00 0.00 38.88 4.02
2864 5369 8.919777 ATTACAAATAATACCTAAGGCTGGTC 57.080 34.615 0.00 0.00 38.88 4.02
2894 5690 4.994852 TGATTGCCACTCACTTACTACAAC 59.005 41.667 0.00 0.00 0.00 3.32
2906 5702 6.073873 CGAGATTAAGATTCTGATTGCCACTC 60.074 42.308 0.00 0.00 0.00 3.51
2952 5751 8.514594 CAGGTGTGTAGTCAACAAATTAATCAT 58.485 33.333 0.00 0.00 40.63 2.45
3019 5818 3.294493 AACGCCCAAAGCACGCAT 61.294 55.556 0.00 0.00 44.04 4.73
3116 5952 2.234613 CTGGTGCACCAACAGTACG 58.765 57.895 36.71 20.86 46.97 3.67
3153 6001 1.128692 GGAGGACAAGCGAATGAAACG 59.871 52.381 0.00 0.00 0.00 3.60
3204 6057 8.644374 TTTAGGTGCTTAAACCACTCAAATAT 57.356 30.769 0.00 0.00 43.20 1.28
3205 6058 8.644374 ATTTAGGTGCTTAAACCACTCAAATA 57.356 30.769 0.00 0.00 43.20 1.40
3206 6059 6.969993 TTTAGGTGCTTAAACCACTCAAAT 57.030 33.333 0.00 0.00 43.20 2.32
3247 6102 2.781595 ATCCCTGGACACGTCAACGC 62.782 60.000 1.81 0.00 44.43 4.84
3380 6252 2.164017 TCGTCGACGAATAATTGACCCA 59.836 45.455 36.25 10.62 46.30 4.51
3434 6311 7.857569 ACTACTACTACTACTACTAGACGTCG 58.142 42.308 10.46 0.00 0.00 5.12
3472 7075 5.848406 AGCAAATTAATCGGTCAACCAAAA 58.152 33.333 0.00 0.00 35.14 2.44
4223 9150 4.338879 CTTCCTTTGATGGGTGAATGTCT 58.661 43.478 0.00 0.00 0.00 3.41
4381 9310 8.463930 AATTCAACAGATACCTTTCAACTTGA 57.536 30.769 0.00 0.00 0.00 3.02
4521 9490 5.829391 TGCACGTAGTCACTCCCTTATATTA 59.171 40.000 0.00 0.00 41.61 0.98
4696 10262 7.064134 TCACCTATAAACGCTTTGAACACTATG 59.936 37.037 0.00 0.00 0.00 2.23
4724 10290 4.193826 TGTGTGAGAGTGCTATTCTTCC 57.806 45.455 0.00 0.00 0.00 3.46
4875 10475 5.498393 TCAAATATGGGTTTAAGTACCGCA 58.502 37.500 0.00 0.00 39.18 5.69
4876 10476 6.628919 ATCAAATATGGGTTTAAGTACCGC 57.371 37.500 0.00 0.00 39.18 5.68
4925 10790 7.987268 TTAAGTTGTCTAGTGCGATGATTAG 57.013 36.000 0.00 0.00 0.00 1.73
4927 10792 9.547753 AATATTAAGTTGTCTAGTGCGATGATT 57.452 29.630 0.00 0.00 0.00 2.57
4981 10949 7.764443 TGTGGCTTCTATAAGAACATTCAGTAC 59.236 37.037 0.00 0.00 34.37 2.73
5043 11011 4.273480 TCAATAGCCGCTTAAAGATGAAGC 59.727 41.667 0.00 0.00 44.80 3.86
5114 11082 1.340502 TGAAACCAACACAGGTGCTCA 60.341 47.619 0.00 0.00 42.25 4.26
5115 11083 1.065551 GTGAAACCAACACAGGTGCTC 59.934 52.381 0.00 0.00 42.25 4.26
5117 11085 3.641031 GTGAAACCAACACAGGTGC 57.359 52.632 0.00 0.00 42.25 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.