AutoCloner

Multiple sequence alignment - TraesCS6B01G096500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G096500	chr6B	100.000	2462	0	0	1	2462	72873762	72871301	0.000000e+00	4547.0
1	TraesCS6B01G096500	chr6B	93.243	1909	102	7	282	2167	72962291	72960387	0.000000e+00	2785.0
2	TraesCS6B01G096500	chr6B	87.902	1992	157	33	1	1922	72900723	72898746	0.000000e+00	2266.0
3	TraesCS6B01G096500	chr6B	87.620	1987	166	35	1	1922	72927925	72925954	0.000000e+00	2233.0
4	TraesCS6B01G096500	chr6B	88.273	1859	135	28	662	2462	72895634	72893801	0.000000e+00	2148.0
5	TraesCS6B01G096500	chr6B	90.838	1528	121	13	716	2234	72922276	72920759	0.000000e+00	2028.0
6	TraesCS6B01G096500	chr6B	96.335	191	6	1	2273	2462	72960124	72959934	1.840000e-81	313.0
7	TraesCS6B01G096500	chr6B	88.827	179	17	3	2286	2462	72924473	72924296	1.480000e-52	217.0
8	TraesCS6B01G096500	chr6B	97.143	35	1	0	683	717	72922326	72922292	2.640000e-05	60.2
9	TraesCS6B01G096500	chr6D	86.878	1547	150	28	716	2240	35396117	35394602	0.000000e+00	1683.0
10	TraesCS6B01G096500	chr6D	86.894	1526	154	22	716	2238	35320201	35318719	0.000000e+00	1668.0
11	TraesCS6B01G096500	chr6D	86.745	1524	158	22	716	2237	35348749	35347268	0.000000e+00	1655.0
12	TraesCS6B01G096500	chr6D	88.249	1319	121	16	899	2208	35232918	35231625	0.000000e+00	1546.0
13	TraesCS6B01G096500	chr6D	85.878	1487	149	29	995	2462	35312813	35311369	0.000000e+00	1526.0
14	TraesCS6B01G096500	chr6D	83.763	1398	141	42	1096	2462	35288814	35287472	0.000000e+00	1245.0
15	TraesCS6B01G096500	chr6D	85.000	840	93	20	1417	2253	35285484	35284675	0.000000e+00	822.0
16	TraesCS6B01G096500	chr6D	85.312	817	90	17	1417	2230	35229234	35228445	0.000000e+00	817.0
17	TraesCS6B01G096500	chr6D	87.702	309	25	4	716	1024	35391981	35391686	5.040000e-92	348.0
18	TraesCS6B01G096500	chr6D	83.425	362	50	9	39	394	37465908	37466265	6.560000e-86	327.0
19	TraesCS6B01G096500	chr6D	88.701	177	17	3	2281	2456	35322198	35322024	1.920000e-51	213.0
20	TraesCS6B01G096500	chr6D	90.370	135	12	1	2329	2462	35231347	35231213	2.520000e-40	176.0
21	TraesCS6B01G096500	chr6D	90.625	128	12	0	2335	2462	35376500	35376373	1.170000e-38	171.0
22	TraesCS6B01G096500	chr6D	88.889	135	13	2	2281	2415	35394241	35394109	5.450000e-37	165.0
23	TraesCS6B01G096500	chr6D	90.625	96	6	3	414	509	35324129	35324037	9.240000e-25	124.0
24	TraesCS6B01G096500	chr6D	100.000	38	0	0	1	38	35324309	35324272	1.220000e-08	71.3
25	TraesCS6B01G096500	chr6D	100.000	38	0	0	1	38	35352491	35352454	1.220000e-08	71.3
26	TraesCS6B01G096500	chr6A	87.329	876	97	10	716	1585	39267031	39266164	0.000000e+00	990.0
27	TraesCS6B01G096500	chr6A	87.006	785	65	19	716	1498	39262848	39262099	0.000000e+00	850.0
28	TraesCS6B01G096500	chr6A	90.409	636	56	2	1545	2180	39262087	39261457	0.000000e+00	832.0
29	TraesCS6B01G096500	chr6A	95.833	96	4	0	414	509	39267203	39267108	3.280000e-34	156.0
30	TraesCS6B01G096500	chrUn	85.215	372	39	8	38	394	437152368	437152738	3.870000e-98	368.0
31	TraesCS6B01G096500	chrUn	84.182	373	36	13	42	394	79381821	79381452	8.430000e-90	340.0
32	TraesCS6B01G096500	chrUn	84.182	373	36	13	42	394	79408098	79407729	8.430000e-90	340.0
33	TraesCS6B01G096500	chr4A	85.399	363	44	8	39	394	610269938	610270298	3.870000e-98	368.0
34	TraesCS6B01G096500	chr4A	94.000	150	9	0	511	660	631506645	631506794	6.850000e-56	228.0
35	TraesCS6B01G096500	chr3A	85.215	372	39	8	38	394	737854288	737854658	3.870000e-98	368.0
36	TraesCS6B01G096500	chr5A	87.417	302	34	4	96	394	672758051	672757751	6.520000e-91	344.0
37	TraesCS6B01G096500	chr7A	94.000	150	9	0	511	660	405063487	405063636	6.850000e-56	228.0
38	TraesCS6B01G096500	chr4B	94.000	150	9	0	511	660	24396678	24396529	6.850000e-56	228.0
39	TraesCS6B01G096500	chr2A	93.333	150	10	0	511	660	77335066	77334917	3.190000e-54	222.0
40	TraesCS6B01G096500	chr2D	91.946	149	12	0	511	659	16762429	16762577	2.480000e-50	209.0
41	TraesCS6B01G096500	chr4D	93.671	79	5	0	582	660	400894869	400894947	4.300000e-23	119.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G096500	chr6B	72871301	72873762	2461	True	4547.000000	4547	100.00000	1	2462	1	chr6B.!!$R1	2461
1	TraesCS6B01G096500	chr6B	72893801	72900723	6922	True	2207.000000	2266	88.08750	1	2462	2	chr6B.!!$R2	2461
2	TraesCS6B01G096500	chr6B	72959934	72962291	2357	True	1549.000000	2785	94.78900	282	2462	2	chr6B.!!$R4	2180
3	TraesCS6B01G096500	chr6B	72920759	72927925	7166	True	1134.550000	2233	91.10700	1	2462	4	chr6B.!!$R3	2461
4	TraesCS6B01G096500	chr6D	35311369	35312813	1444	True	1526.000000	1526	85.87800	995	2462	1	chr6D.!!$R1	1467
5	TraesCS6B01G096500	chr6D	35284675	35288814	4139	True	1033.500000	1245	84.38150	1096	2462	2	chr6D.!!$R4	1366
6	TraesCS6B01G096500	chr6D	35347268	35352491	5223	True	863.150000	1655	93.37250	1	2237	2	chr6D.!!$R6	2236
7	TraesCS6B01G096500	chr6D	35228445	35232918	4473	True	846.333333	1546	87.97700	899	2462	3	chr6D.!!$R3	1563
8	TraesCS6B01G096500	chr6D	35391686	35396117	4431	True	732.000000	1683	87.82300	716	2415	3	chr6D.!!$R7	1699
9	TraesCS6B01G096500	chr6D	35318719	35324309	5590	True	519.075000	1668	91.55500	1	2456	4	chr6D.!!$R5	2455
10	TraesCS6B01G096500	chr6A	39261457	39267203	5746	True	707.000000	990	90.14425	414	2180	4	chr6A.!!$R1	1766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
85	86	0.322098	TGCACCCATGGAGTAAACCG	60.322	55.0	15.22	0.0	0.00	4.44	F
87	88	0.393808	CACCCATGGAGTAAACCGGG	60.394	60.0	15.22	0.0	36.88	5.73	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1084	1228	0.457853	CTGCACATGAAGCACCATGC	60.458	55.0	15.46	3.94	45.79	4.06	R
1586	6957	0.867753	CGACTCTCAGTGCATACCGC	60.868	60.0	0.00	0.00	42.89	5.68	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
80	81	0.774276	TTTGGTGCACCCATGGAGTA	59.226	50.000	32.62	8.94	44.74	2.59
83	84	1.173913	GGTGCACCCATGGAGTAAAC	58.826	55.000	26.31	10.44	0.00	2.01
85	86	0.322098	TGCACCCATGGAGTAAACCG	60.322	55.000	15.22	0.00	0.00	4.44
87	88	0.393808	CACCCATGGAGTAAACCGGG	60.394	60.000	15.22	0.00	36.88	5.73
176	184	5.646467	CTTGCAAAGTTTGATCACCAAAG	57.354	39.130	19.82	6.59	44.64	2.77
204	212	8.729756	ACATCAAATGATCTTCATACAAAACGA	58.270	29.630	0.00	0.00	35.76	3.85
257	265	5.971895	ATTCACATGTTTTCAGCACAAAC	57.028	34.783	0.00	0.00	35.11	2.93
264	272	3.993081	TGTTTTCAGCACAAACTTGGTTG	59.007	39.130	0.00	0.00	35.50	3.77
268	276	4.264460	TCAGCACAAACTTGGTTGTTTT	57.736	36.364	0.78	0.00	39.73	2.43
273	281	5.992217	AGCACAAACTTGGTTGTTTTTACAA	59.008	32.000	0.78	0.00	39.73	2.41
280	288	6.999950	ACTTGGTTGTTTTTACAAAGTTCCT	58.000	32.000	0.00	0.00	36.59	3.36
316	324	2.286872	CACCAAATTTTGCAAGCACCA	58.713	42.857	0.00	0.00	0.00	4.17
451	572	5.582269	CAGTTACTAGTACTACCACGCTACA	59.418	44.000	0.91	0.00	0.00	2.74
485	606	1.153745	CAAGAGAGGGACGAAGCCG	60.154	63.158	0.00	0.00	42.50	5.52
509	630	5.466819	AGAGAGAGGAGGCATAAAGAGAAT	58.533	41.667	0.00	0.00	0.00	2.40
649	770	1.081906	CACAATGTGTCGGCTGTGC	60.082	57.895	5.00	0.00	33.41	4.57
687	808	0.759346	AACCTTCAAGACAGCCGAGT	59.241	50.000	0.00	0.00	0.00	4.18
785	923	2.035321	GGAGGAGGCATTAAGAGAGACG	59.965	54.545	0.00	0.00	0.00	4.18
859	997	1.070445	GCCAGCACTGTGACAGAGT	59.930	57.895	20.97	0.00	35.18	3.24
871	1009	3.704566	TGTGACAGAGTAGAAACACCACT	59.295	43.478	0.00	0.00	0.00	4.00
897	1035	7.867909	TCTCTCATGTATAAATAGGAGCAAACG	59.132	37.037	0.00	0.00	0.00	3.60
945	1083	4.043596	AGATATCTTCCTGCCTCCACTTT	58.956	43.478	0.00	0.00	0.00	2.66
1062	1206	4.661222	TGATCAAGCACCATTTCCTACAA	58.339	39.130	0.00	0.00	0.00	2.41
1092	1236	2.097304	TCGTGTCATATTTGCATGGTGC	59.903	45.455	0.00	0.00	45.29	5.01
1128	1274	8.803235	AGGGTATTCATGGTTTTCTTTTACTTC	58.197	33.333	0.00	0.00	0.00	3.01
1280	6644	3.963374	CAGATGAGGAGGGTATGAACTCA	59.037	47.826	0.00	0.00	41.79	3.41
1498	6865	0.744771	GGTTTGTGGATCGAGGGCTC	60.745	60.000	0.00	0.00	0.00	4.70
1514	6881	4.273318	AGGGCTCATCCATTGAAGTAAAC	58.727	43.478	0.00	0.00	36.21	2.01
1571	6942	0.519519	CCAAATAACGCGCCACAGAA	59.480	50.000	5.73	0.00	0.00	3.02
1572	6943	1.465689	CCAAATAACGCGCCACAGAAG	60.466	52.381	5.73	0.00	0.00	2.85
1580	6951	2.282040	GCCACAGAAGTGCCTGCT	60.282	61.111	0.00	0.00	44.53	4.24
1610	6981	1.261480	ATGCACTGAGAGTCGGTCTT	58.739	50.000	0.00	0.00	32.75	3.01
1637	7008	2.691522	CATGCTTGCGTCGAGTCG	59.308	61.111	6.09	6.09	0.00	4.18
1661	7032	3.636231	CAGGTTGGGGTCGCTCCA	61.636	66.667	0.00	0.00	38.11	3.86
1668	7039	1.376037	GGGGTCGCTCCAGTTTCTG	60.376	63.158	0.00	0.00	38.11	3.02
1674	7045	2.970974	GCTCCAGTTTCTGCCGTGC	61.971	63.158	0.00	0.00	0.00	5.34
1720	7091	2.202743	CCATCGGATCACACGCGT	60.203	61.111	5.58	5.58	0.00	6.01
1722	7093	0.526739	CCATCGGATCACACGCGTTA	60.527	55.000	10.22	0.00	0.00	3.18
1783	7154	0.035820	GGGGTGGCACGAGTCATTAA	60.036	55.000	12.17	0.00	0.00	1.40
1803	7174	3.255969	AGAACGTGGTGTGTGTTTAGT	57.744	42.857	0.00	0.00	0.00	2.24
1874	7247	5.887598	AGATGTAGCAAGTTTTCATGGCATA	59.112	36.000	0.00	0.00	0.00	3.14
1893	7266	5.413499	GCATAAAATTCCATGTGTGCTCTT	58.587	37.500	0.00	0.00	0.00	2.85
1961	7334	4.532126	TGAGTAATCTTGGGTCACTGACAT	59.468	41.667	11.34	0.00	33.68	3.06
2000	7374	0.607217	TGTGCTCTTGGCCATGTGAG	60.607	55.000	21.23	20.66	40.92	3.51
2142	15475	3.493350	GCTGATATGTTGACCCAGACGAT	60.493	47.826	0.00	0.00	0.00	3.73
2196	15529	1.872234	CTGTGTACGACGATGGCCG	60.872	63.158	0.00	0.00	45.44	6.13
2296	15652	4.081087	GGTATATATGGCTGGGACACGATT	60.081	45.833	0.00	0.00	0.00	3.34
2297	15653	5.128171	GGTATATATGGCTGGGACACGATTA	59.872	44.000	0.00	0.00	0.00	1.75
2299	15655	2.332063	ATGGCTGGGACACGATTAAG	57.668	50.000	0.00	0.00	0.00	1.85
2300	15656	0.981183	TGGCTGGGACACGATTAAGT	59.019	50.000	0.00	0.00	0.00	2.24
2301	15657	2.181125	TGGCTGGGACACGATTAAGTA	58.819	47.619	0.00	0.00	0.00	2.24
2302	15658	2.568062	TGGCTGGGACACGATTAAGTAA	59.432	45.455	0.00	0.00	0.00	2.24
2303	15659	3.199071	TGGCTGGGACACGATTAAGTAAT	59.801	43.478	0.00	0.00	0.00	1.89
2304	15660	3.560068	GGCTGGGACACGATTAAGTAATG	59.440	47.826	0.00	0.00	0.00	1.90
2305	15661	3.560068	GCTGGGACACGATTAAGTAATGG	59.440	47.826	0.00	0.00	0.00	3.16
2357	15722	8.511604	AGGTTTCTCAAAACATATGTCCTATG	57.488	34.615	9.23	6.34	45.44	2.23
2362	15727	8.681486	TCTCAAAACATATGTCCTATGGAATG	57.319	34.615	9.23	0.00	41.41	2.67
2363	15728	7.229306	TCTCAAAACATATGTCCTATGGAATGC	59.771	37.037	9.23	0.00	41.41	3.56
2377	15742	4.799564	TGGAATGCCAACAAATAGGTTC	57.200	40.909	0.00	0.00	42.49	3.62
2437	15802	9.561270	TTTATTTCGATTCGATAAATTTGTGCA	57.439	25.926	9.96	0.00	35.23	4.57
2457	15822	7.440198	TGTGCACTGAAATTATCCAATTGAAA	58.560	30.769	19.41	0.00	34.53	2.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
122	130	6.052840	ACATTTGCTCATAATCATGTCGAC	57.947	37.500	9.11	9.11	33.57	4.20
164	172	7.287512	TCATTTGATGTTCTTTGGTGATCAA	57.712	32.000	0.00	0.00	32.53	2.57
167	175	7.713734	AGATCATTTGATGTTCTTTGGTGAT	57.286	32.000	0.00	0.00	36.24	3.06
204	212	4.463539	TGGTGCAGAGCATCATTTGTATTT	59.536	37.500	0.00	0.00	45.28	1.40
257	265	6.252655	CGAGGAACTTTGTAAAAACAACCAAG	59.747	38.462	0.00	0.00	41.55	3.61
264	272	6.068473	ACATCCGAGGAACTTTGTAAAAAC	57.932	37.500	0.00	0.00	41.55	2.43
268	276	4.610605	TGACATCCGAGGAACTTTGTAA	57.389	40.909	0.00	0.00	41.55	2.41
273	281	4.003648	GTGAAATGACATCCGAGGAACTT	58.996	43.478	0.00	0.00	41.55	2.66
280	288	1.349357	TGGTGGTGAAATGACATCCGA	59.651	47.619	0.00	0.00	0.00	4.55
380	388	5.393027	GCACTTCAAATCACCCACGATAAAT	60.393	40.000	0.00	0.00	0.00	1.40
387	395	3.383761	CAAAGCACTTCAAATCACCCAC	58.616	45.455	0.00	0.00	0.00	4.61
472	593	1.720694	CTCTCTCGGCTTCGTCCCTC	61.721	65.000	0.00	0.00	35.06	4.30
485	606	4.469657	TCTCTTTATGCCTCCTCTCTCTC	58.530	47.826	0.00	0.00	0.00	3.20
509	630	2.037902	TGTCGTCCCTACAGCAATTTCA	59.962	45.455	0.00	0.00	0.00	2.69
537	658	1.736645	CGTCGTCCAATGTTCGGCT	60.737	57.895	0.00	0.00	0.00	5.52
545	666	1.305046	ACTCCTCCCGTCGTCCAAT	60.305	57.895	0.00	0.00	0.00	3.16
595	716	2.719979	CAGCGCATCAAGCCATCC	59.280	61.111	11.47	0.00	41.38	3.51
649	770	1.593196	TTCTCTTTCCAACGCTGGTG	58.407	50.000	4.46	0.00	43.97	4.17
687	808	3.729462	CGTTCGCTTTGACTTTTGACCAA	60.729	43.478	0.00	0.00	0.00	3.67
803	941	0.536006	GTGTGACCTCTGGCTTGCTT	60.536	55.000	0.00	0.00	0.00	3.91
859	997	8.589701	TTATACATGAGAGAGTGGTGTTTCTA	57.410	34.615	0.00	0.00	0.00	2.10
871	1009	7.867909	CGTTTGCTCCTATTTATACATGAGAGA	59.132	37.037	0.00	0.00	0.00	3.10
897	1035	1.520342	GGATGCTGCGTGACCTCTC	60.520	63.158	0.00	0.00	0.00	3.20
945	1083	0.633921	AGGCTGCCTAGAGGAAGAGA	59.366	55.000	21.98	0.00	44.07	3.10
1062	1206	7.609760	TGCAAATATGACACGAGAAATAAGT	57.390	32.000	0.00	0.00	0.00	2.24
1084	1228	0.457853	CTGCACATGAAGCACCATGC	60.458	55.000	15.46	3.94	45.79	4.06
1092	1236	3.317149	CCATGAATACCCTGCACATGAAG	59.683	47.826	11.57	0.00	40.13	3.02
1439	6804	2.796557	AGTGGATCTCGTCACTCTTCA	58.203	47.619	0.00	0.00	39.77	3.02
1441	6806	4.396790	GTCTTAGTGGATCTCGTCACTCTT	59.603	45.833	5.72	0.00	42.51	2.85
1498	6865	7.144722	TGCACTAAGTTTACTTCAATGGATG	57.855	36.000	0.00	0.00	37.40	3.51
1580	6951	1.518352	CAGTGCATACCGCGTGCTA	60.518	57.895	19.16	5.26	46.97	3.49
1586	6957	0.867753	CGACTCTCAGTGCATACCGC	60.868	60.000	0.00	0.00	42.89	5.68
1624	6995	2.990735	GCATCGACTCGACGCAAG	59.009	61.111	14.29	0.00	44.50	4.01
1637	7008	1.097547	CGACCCCAACCTGATGCATC	61.098	60.000	20.14	20.14	0.00	3.91
1641	7012	1.450312	GAGCGACCCCAACCTGATG	60.450	63.158	0.00	0.00	0.00	3.07
1674	7045	1.447838	CCCATGACTCGGTTCACGG	60.448	63.158	0.00	0.00	44.45	4.94
1720	7091	6.931281	GCATGATCTACAGCTCCACTATTTAA	59.069	38.462	0.00	0.00	0.00	1.52
1722	7093	5.163269	TGCATGATCTACAGCTCCACTATTT	60.163	40.000	0.00	0.00	0.00	1.40
1783	7154	3.255969	ACTAAACACACACCACGTTCT	57.744	42.857	0.00	0.00	0.00	3.01
1852	7225	6.528537	TTATGCCATGAAAACTTGCTACAT	57.471	33.333	0.00	0.00	0.00	2.29
1874	7247	5.280654	ACAAAGAGCACACATGGAATTTT	57.719	34.783	0.00	0.00	0.00	1.82
1893	7266	5.648526	TGAGGTTTTACACACTAGCAAACAA	59.351	36.000	0.00	0.00	0.00	2.83
1961	7334	6.015434	AGCACATGGATACGATACTGAATGTA	60.015	38.462	0.00	0.00	42.51	2.29
2142	15475	2.883574	CATAACCTGAGTCGCCGTAAA	58.116	47.619	0.00	0.00	0.00	2.01
2196	15529	2.202932	AGCGATGGTCATGCCGAC	60.203	61.111	0.00	0.00	44.57	4.79
2262	15595	7.616935	CCCAGCCATATATACCTCATCATTTTT	59.383	37.037	0.00	0.00	0.00	1.94
2263	15596	7.036644	TCCCAGCCATATATACCTCATCATTTT	60.037	37.037	0.00	0.00	0.00	1.82
2264	15597	6.448061	TCCCAGCCATATATACCTCATCATTT	59.552	38.462	0.00	0.00	0.00	2.32
2272	15605	2.832129	CGTGTCCCAGCCATATATACCT	59.168	50.000	0.00	0.00	0.00	3.08
2273	15606	2.829720	TCGTGTCCCAGCCATATATACC	59.170	50.000	0.00	0.00	0.00	2.73
2275	15608	6.439375	ACTTAATCGTGTCCCAGCCATATATA	59.561	38.462	0.00	0.00	0.00	0.86
2276	15609	5.248477	ACTTAATCGTGTCCCAGCCATATAT	59.752	40.000	0.00	0.00	0.00	0.86
2278	15611	3.391296	ACTTAATCGTGTCCCAGCCATAT	59.609	43.478	0.00	0.00	0.00	1.78
2303	15659	9.814899	CCAAATTAATATACAAAATGCTCACCA	57.185	29.630	0.00	0.00	0.00	4.17
2304	15660	9.816354	ACCAAATTAATATACAAAATGCTCACC	57.184	29.630	0.00	0.00	0.00	4.02
2357	15722	3.769300	AGGAACCTATTTGTTGGCATTCC	59.231	43.478	3.16	3.16	35.60	3.01
2362	15727	6.584185	TTTTCTAGGAACCTATTTGTTGGC	57.416	37.500	0.80	0.00	0.00	4.52
2363	15728	7.309805	CCCTTTTTCTAGGAACCTATTTGTTGG	60.310	40.741	0.80	1.86	37.50	3.77
2377	15742	4.042934	TCCTCTGGTTTCCCTTTTTCTAGG	59.957	45.833	0.00	0.00	34.92	3.02
2424	15789	9.585099	TGGATAATTTCAGTGCACAAATTTATC	57.415	29.630	27.24	27.24	34.68	1.75
2428	15793	8.723311	CAATTGGATAATTTCAGTGCACAAATT	58.277	29.630	23.45	23.45	34.34	1.82

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.