Multiple sequence alignment - TraesCS6B01G095600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G095600 chr6B 100.000 5003 0 0 1 5003 71709698 71704696 0.000000e+00 9239.0
1 TraesCS6B01G095600 chr6B 88.365 2441 148 51 1539 3925 71839713 71842071 0.000000e+00 2809.0
2 TraesCS6B01G095600 chr6B 85.868 559 47 21 945 1492 71590671 71591208 2.610000e-157 566.0
3 TraesCS6B01G095600 chr6B 86.731 520 25 14 2049 2553 71591288 71591778 5.700000e-149 538.0
4 TraesCS6B01G095600 chr6B 87.906 339 29 8 2680 3016 71591730 71592058 6.070000e-104 388.0
5 TraesCS6B01G095600 chr6B 82.822 326 43 7 340 661 71838576 71838892 3.810000e-71 279.0
6 TraesCS6B01G095600 chr6B 81.311 305 22 16 875 1164 71839143 71839427 1.090000e-51 215.0
7 TraesCS6B01G095600 chr6B 90.741 162 9 2 471 632 71585008 71585163 1.410000e-50 211.0
8 TraesCS6B01G095600 chr6B 94.737 133 7 0 211 343 436776905 436777037 1.830000e-49 207.0
9 TraesCS6B01G095600 chr6B 72.340 470 104 21 4093 4551 17724531 17724077 1.890000e-24 124.0
10 TraesCS6B01G095600 chr6B 76.136 264 25 20 666 903 71585231 71585482 2.460000e-18 104.0
11 TraesCS6B01G095600 chr6B 97.917 48 1 0 1443 1490 71839647 71839694 3.210000e-12 84.2
12 TraesCS6B01G095600 chr6D 93.116 3283 106 33 669 3908 34737304 34734099 0.000000e+00 4700.0
13 TraesCS6B01G095600 chr6D 91.542 1868 103 27 2083 3926 34927652 34929488 0.000000e+00 2523.0
14 TraesCS6B01G095600 chr6D 84.055 1016 68 50 794 1762 34593316 34594284 0.000000e+00 893.0
15 TraesCS6B01G095600 chr6D 90.419 334 22 5 338 662 34737695 34737363 9.950000e-117 431.0
16 TraesCS6B01G095600 chr6D 85.333 450 26 20 1549 1990 34927191 34927608 3.580000e-116 429.0
17 TraesCS6B01G095600 chr6D 89.254 335 17 7 2083 2400 34647730 34648062 7.800000e-108 401.0
18 TraesCS6B01G095600 chr6D 80.614 521 75 13 4090 4606 34733253 34732755 3.660000e-101 379.0
19 TraesCS6B01G095600 chr6D 76.406 640 48 49 876 1490 34926605 34927166 2.990000e-62 250.0
20 TraesCS6B01G095600 chr6D 87.437 199 16 4 464 661 34591572 34591762 2.340000e-53 220.0
21 TraesCS6B01G095600 chr6D 79.221 308 37 12 415 710 34926157 34926449 6.610000e-44 189.0
22 TraesCS6B01G095600 chr6D 84.848 132 6 4 81 212 34737811 34737694 2.450000e-23 121.0
23 TraesCS6B01G095600 chr6D 87.952 83 5 5 4003 4081 78359868 78359787 5.330000e-15 93.5
24 TraesCS6B01G095600 chr6D 87.500 80 9 1 4006 4084 34733453 34733374 1.920000e-14 91.6
25 TraesCS6B01G095600 chr6A 91.540 3475 157 48 666 4080 39050272 39046875 0.000000e+00 4662.0
26 TraesCS6B01G095600 chr6A 88.975 2313 138 38 1657 3926 39130199 39132437 0.000000e+00 2750.0
27 TraesCS6B01G095600 chr6A 83.363 553 63 12 945 1490 38869885 38870415 7.530000e-133 484.0
28 TraesCS6B01G095600 chr6A 88.855 332 21 9 338 662 39050644 39050322 1.310000e-105 394.0
29 TraesCS6B01G095600 chr6A 83.235 340 40 6 2823 3149 39002138 39002473 3.790000e-76 296.0
30 TraesCS6B01G095600 chr6A 90.000 200 17 1 3054 3253 39001946 39002142 6.430000e-64 255.0
31 TraesCS6B01G095600 chr6A 92.614 176 13 0 2110 2285 38893080 38893255 2.310000e-63 254.0
32 TraesCS6B01G095600 chr6A 82.069 290 30 17 1696 1976 38870883 38871159 1.400000e-55 228.0
33 TraesCS6B01G095600 chr6A 87.432 183 9 2 30 212 39050811 39050643 1.100000e-46 198.0
34 TraesCS6B01G095600 chr6A 76.642 274 26 18 666 913 38869622 38869883 3.160000e-22 117.0
35 TraesCS6B01G095600 chr6A 87.838 74 9 0 586 659 38869485 38869558 2.480000e-13 87.9
36 TraesCS6B01G095600 chr6A 87.342 79 7 3 4004 4079 94110928 94110850 2.480000e-13 87.9
37 TraesCS6B01G095600 chr6A 95.833 48 2 0 1441 1488 39130036 39130083 1.490000e-10 78.7
38 TraesCS6B01G095600 chr6A 85.897 78 5 5 1549 1625 39130113 39130185 1.490000e-10 78.7
39 TraesCS6B01G095600 chr1D 94.841 252 13 0 3138 3389 308198065 308197814 1.310000e-105 394.0
40 TraesCS6B01G095600 chr1D 86.420 81 8 3 4004 4081 59297996 59297916 8.920000e-13 86.1
41 TraesCS6B01G095600 chr1D 97.619 42 1 0 3629 3670 308197818 308197777 6.950000e-09 73.1
42 TraesCS6B01G095600 chr5D 92.481 266 17 1 3113 3378 455834383 455834645 1.310000e-100 377.0
43 TraesCS6B01G095600 chr5D 94.161 137 7 1 213 349 409446645 409446510 1.830000e-49 207.0
44 TraesCS6B01G095600 chr3A 81.463 410 67 5 4090 4498 171042715 171042314 1.340000e-85 327.0
45 TraesCS6B01G095600 chr3A 77.282 515 99 15 4095 4601 742042675 742043179 2.280000e-73 287.0
46 TraesCS6B01G095600 chr3A 96.923 130 4 0 3213 3342 49472908 49472779 8.430000e-53 219.0
47 TraesCS6B01G095600 chr1A 78.838 482 84 14 4095 4568 249430882 249430411 4.860000e-80 309.0
48 TraesCS6B01G095600 chr1B 77.756 517 97 15 4093 4601 17617656 17618162 8.140000e-78 302.0
49 TraesCS6B01G095600 chr1B 96.324 136 5 0 210 345 621622784 621622649 1.810000e-54 224.0
50 TraesCS6B01G095600 chr3B 77.606 518 96 17 4093 4601 697856895 697857401 3.790000e-76 296.0
51 TraesCS6B01G095600 chr3B 94.767 172 8 1 3162 3333 424780863 424781033 2.970000e-67 267.0
52 TraesCS6B01G095600 chr2A 77.563 517 94 18 4095 4601 110863941 110863437 4.900000e-75 292.0
53 TraesCS6B01G095600 chr2A 88.732 71 4 4 4015 4081 410858637 410858567 3.210000e-12 84.2
54 TraesCS6B01G095600 chr2A 90.323 62 4 2 4697 4758 736533618 736533559 4.150000e-11 80.5
55 TraesCS6B01G095600 chrUn 77.645 501 92 16 4092 4583 453241601 453241112 2.280000e-73 287.0
56 TraesCS6B01G095600 chrUn 92.517 147 9 2 193 339 48417775 48417631 5.080000e-50 209.0
57 TraesCS6B01G095600 chr7A 77.290 524 96 19 4093 4604 691471943 691471431 2.280000e-73 287.0
58 TraesCS6B01G095600 chr2B 77.115 520 101 15 4093 4604 616457703 616457194 8.200000e-73 285.0
59 TraesCS6B01G095600 chr2B 72.553 521 113 21 4096 4601 66027602 66027097 5.220000e-30 143.0
60 TraesCS6B01G095600 chr5B 77.433 483 91 15 4093 4568 619229 619700 6.380000e-69 272.0
61 TraesCS6B01G095600 chr5B 94.776 134 7 0 213 346 578088614 578088747 5.080000e-50 209.0
62 TraesCS6B01G095600 chr4A 77.113 485 96 12 4092 4569 700558604 700558128 2.970000e-67 267.0
63 TraesCS6B01G095600 chr5A 87.850 214 12 7 3502 3711 652055853 652055650 6.470000e-59 239.0
64 TraesCS6B01G095600 chr5A 97.674 43 1 0 4697 4739 458520160 458520202 1.930000e-09 75.0
65 TraesCS6B01G095600 chr3D 96.124 129 5 0 211 339 280387102 280386974 1.410000e-50 211.0
66 TraesCS6B01G095600 chr3D 86.585 82 8 3 4003 4081 157342090 157342171 2.480000e-13 87.9
67 TraesCS6B01G095600 chr3D 75.342 219 30 17 4634 4846 18789604 18789804 3.210000e-12 84.2
68 TraesCS6B01G095600 chr7B 93.056 144 8 2 213 356 461475566 461475707 5.080000e-50 209.0
69 TraesCS6B01G095600 chr7B 95.420 131 6 0 212 342 678632357 678632487 5.080000e-50 209.0
70 TraesCS6B01G095600 chr7B 75.845 207 32 16 4697 4891 40437110 40437310 6.900000e-14 89.8
71 TraesCS6B01G095600 chr7B 87.324 71 7 2 4013 4081 684106405 684106475 4.150000e-11 80.5
72 TraesCS6B01G095600 chr2D 95.385 130 6 0 213 342 552190018 552189889 1.830000e-49 207.0
73 TraesCS6B01G095600 chr4D 86.813 91 6 6 3994 4081 96497149 96497236 4.120000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G095600 chr6B 71704696 71709698 5002 True 9239.000000 9239 100.000000 1 5003 1 chr6B.!!$R2 5002
1 TraesCS6B01G095600 chr6B 71838576 71842071 3495 False 846.800000 2809 87.603750 340 3925 4 chr6B.!!$F4 3585
2 TraesCS6B01G095600 chr6B 71590671 71592058 1387 False 497.333333 566 86.835000 945 3016 3 chr6B.!!$F3 2071
3 TraesCS6B01G095600 chr6D 34732755 34737811 5056 True 1144.520000 4700 87.299400 81 4606 5 chr6D.!!$R2 4525
4 TraesCS6B01G095600 chr6D 34926157 34929488 3331 False 847.750000 2523 83.125500 415 3926 4 chr6D.!!$F3 3511
5 TraesCS6B01G095600 chr6D 34591572 34594284 2712 False 556.500000 893 85.746000 464 1762 2 chr6D.!!$F2 1298
6 TraesCS6B01G095600 chr6A 39046875 39050811 3936 True 1751.333333 4662 89.275667 30 4080 3 chr6A.!!$R2 4050
7 TraesCS6B01G095600 chr6A 39130036 39132437 2401 False 969.133333 2750 90.235000 1441 3926 3 chr6A.!!$F4 2485
8 TraesCS6B01G095600 chr6A 39001946 39002473 527 False 275.500000 296 86.617500 2823 3253 2 chr6A.!!$F3 430
9 TraesCS6B01G095600 chr6A 38869485 38871159 1674 False 229.225000 484 82.478000 586 1976 4 chr6A.!!$F2 1390
10 TraesCS6B01G095600 chr3A 742042675 742043179 504 False 287.000000 287 77.282000 4095 4601 1 chr3A.!!$F1 506
11 TraesCS6B01G095600 chr1B 17617656 17618162 506 False 302.000000 302 77.756000 4093 4601 1 chr1B.!!$F1 508
12 TraesCS6B01G095600 chr3B 697856895 697857401 506 False 296.000000 296 77.606000 4093 4601 1 chr3B.!!$F2 508
13 TraesCS6B01G095600 chr2A 110863437 110863941 504 True 292.000000 292 77.563000 4095 4601 1 chr2A.!!$R1 506
14 TraesCS6B01G095600 chr7A 691471431 691471943 512 True 287.000000 287 77.290000 4093 4604 1 chr7A.!!$R1 511
15 TraesCS6B01G095600 chr2B 616457194 616457703 509 True 285.000000 285 77.115000 4093 4604 1 chr2B.!!$R2 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.030235 GCGTGCGGGTTTTCTCTTTT 59.970 50.0 0.00 0.0 0.00 2.27 F
223 224 0.184451 TCGCCTTATACTCCCTCCGT 59.816 55.0 0.00 0.0 0.00 4.69 F
1861 3773 0.250424 ATGATGATTCATGGCGGCGA 60.250 50.0 12.98 0.0 41.12 5.54 F
1979 3891 1.040339 CCCTCTTGACTCCTCCTCCG 61.040 65.0 0.00 0.0 0.00 4.63 F
3109 5142 0.870393 GGGACGCGATCGACTACATA 59.130 55.0 21.57 0.0 39.41 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 3788 0.745845 CCGCCATCTCCAAGAACCTG 60.746 60.0 0.0 0.0 0.0 4.00 R
1948 3860 0.750911 CAAGAGGGATGGAGCAAGGC 60.751 60.0 0.0 0.0 0.0 4.35 R
2926 4922 0.164002 GGCGTTCGTTGAGCTTCTTC 59.836 55.0 0.0 0.0 0.0 2.87 R
3593 5632 0.609131 CCAAAGCCCACCGTGAATCT 60.609 55.0 0.0 0.0 0.0 2.40 R
4814 7543 0.107831 GGCGCATGGGAATGTACCTA 59.892 55.0 14.9 0.0 0.0 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.446994 AGCAGGAAAGCTAAATTCAAGC 57.553 40.909 4.91 4.91 44.50 4.01
27 28 4.072131 AGGAAAGCTAAATTCAAGCACGA 58.928 39.130 13.49 0.00 42.62 4.35
28 29 4.518970 AGGAAAGCTAAATTCAAGCACGAA 59.481 37.500 13.49 0.00 42.62 3.85
108 109 3.433615 CAGAAAGGTCGAGGTCATTTCAC 59.566 47.826 12.30 0.00 37.82 3.18
132 133 1.961277 CAGCGTGCGGGTTTTCTCT 60.961 57.895 0.00 0.00 0.00 3.10
133 134 1.227853 AGCGTGCGGGTTTTCTCTT 60.228 52.632 0.00 0.00 0.00 2.85
134 135 0.818040 AGCGTGCGGGTTTTCTCTTT 60.818 50.000 0.00 0.00 0.00 2.52
135 136 0.030235 GCGTGCGGGTTTTCTCTTTT 59.970 50.000 0.00 0.00 0.00 2.27
136 137 1.924629 GCGTGCGGGTTTTCTCTTTTC 60.925 52.381 0.00 0.00 0.00 2.29
137 138 1.602377 CGTGCGGGTTTTCTCTTTTCT 59.398 47.619 0.00 0.00 0.00 2.52
138 139 2.602217 CGTGCGGGTTTTCTCTTTTCTG 60.602 50.000 0.00 0.00 0.00 3.02
139 140 2.357952 GTGCGGGTTTTCTCTTTTCTGT 59.642 45.455 0.00 0.00 0.00 3.41
140 141 2.616842 TGCGGGTTTTCTCTTTTCTGTC 59.383 45.455 0.00 0.00 0.00 3.51
141 142 2.616842 GCGGGTTTTCTCTTTTCTGTCA 59.383 45.455 0.00 0.00 0.00 3.58
143 144 3.877508 CGGGTTTTCTCTTTTCTGTCACT 59.122 43.478 0.00 0.00 0.00 3.41
144 145 5.054477 CGGGTTTTCTCTTTTCTGTCACTA 58.946 41.667 0.00 0.00 0.00 2.74
163 164 5.873712 TCACTACTCACTACCTCTAAGAACG 59.126 44.000 0.00 0.00 0.00 3.95
192 193 5.102953 TCTCCAGATGATGAAAAATCGGT 57.897 39.130 0.00 0.00 0.00 4.69
193 194 5.118990 TCTCCAGATGATGAAAAATCGGTC 58.881 41.667 0.00 0.00 0.00 4.79
210 211 1.595929 TCCGCTTTCGTTTCGCCTT 60.596 52.632 0.00 0.00 0.00 4.35
211 212 0.319727 TCCGCTTTCGTTTCGCCTTA 60.320 50.000 0.00 0.00 0.00 2.69
212 213 0.725117 CCGCTTTCGTTTCGCCTTAT 59.275 50.000 0.00 0.00 0.00 1.73
213 214 1.928503 CCGCTTTCGTTTCGCCTTATA 59.071 47.619 0.00 0.00 0.00 0.98
214 215 2.285428 CCGCTTTCGTTTCGCCTTATAC 60.285 50.000 0.00 0.00 0.00 1.47
215 216 2.601763 CGCTTTCGTTTCGCCTTATACT 59.398 45.455 0.00 0.00 0.00 2.12
216 217 3.301643 CGCTTTCGTTTCGCCTTATACTC 60.302 47.826 0.00 0.00 0.00 2.59
217 218 3.001026 GCTTTCGTTTCGCCTTATACTCC 59.999 47.826 0.00 0.00 0.00 3.85
218 219 2.877043 TCGTTTCGCCTTATACTCCC 57.123 50.000 0.00 0.00 0.00 4.30
219 220 2.381911 TCGTTTCGCCTTATACTCCCT 58.618 47.619 0.00 0.00 0.00 4.20
220 221 2.360165 TCGTTTCGCCTTATACTCCCTC 59.640 50.000 0.00 0.00 0.00 4.30
221 222 2.545322 CGTTTCGCCTTATACTCCCTCC 60.545 54.545 0.00 0.00 0.00 4.30
222 223 1.325355 TTCGCCTTATACTCCCTCCG 58.675 55.000 0.00 0.00 0.00 4.63
223 224 0.184451 TCGCCTTATACTCCCTCCGT 59.816 55.000 0.00 0.00 0.00 4.69
224 225 0.597072 CGCCTTATACTCCCTCCGTC 59.403 60.000 0.00 0.00 0.00 4.79
225 226 0.967662 GCCTTATACTCCCTCCGTCC 59.032 60.000 0.00 0.00 0.00 4.79
226 227 1.630223 CCTTATACTCCCTCCGTCCC 58.370 60.000 0.00 0.00 0.00 4.46
227 228 1.133262 CCTTATACTCCCTCCGTCCCA 60.133 57.143 0.00 0.00 0.00 4.37
228 229 2.674420 CTTATACTCCCTCCGTCCCAA 58.326 52.381 0.00 0.00 0.00 4.12
229 230 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
230 231 2.191981 ATACTCCCTCCGTCCCAAAT 57.808 50.000 0.00 0.00 0.00 2.32
231 232 1.961133 TACTCCCTCCGTCCCAAATT 58.039 50.000 0.00 0.00 0.00 1.82
232 233 1.073098 ACTCCCTCCGTCCCAAATTT 58.927 50.000 0.00 0.00 0.00 1.82
233 234 1.004394 ACTCCCTCCGTCCCAAATTTC 59.996 52.381 0.00 0.00 0.00 2.17
234 235 1.282157 CTCCCTCCGTCCCAAATTTCT 59.718 52.381 0.00 0.00 0.00 2.52
235 236 1.708551 TCCCTCCGTCCCAAATTTCTT 59.291 47.619 0.00 0.00 0.00 2.52
236 237 1.818674 CCCTCCGTCCCAAATTTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
237 238 2.514803 CCTCCGTCCCAAATTTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
238 239 2.488153 CCTCCGTCCCAAATTTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
239 240 3.412386 CTCCGTCCCAAATTTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
240 241 3.821033 CTCCGTCCCAAATTTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
241 242 4.975631 TCCGTCCCAAATTTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
242 243 5.001232 TCCGTCCCAAATTTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
243 244 5.001232 CCGTCCCAAATTTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
244 245 5.648092 CCGTCCCAAATTTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
245 246 6.151144 CCGTCCCAAATTTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
246 247 7.309194 CCGTCCCAAATTTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
247 248 7.538678 CGTCCCAAATTTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
248 249 8.360390 GTCCCAAATTTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
249 250 8.576442 TCCCAAATTTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
250 251 8.579863 CCCAAATTTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
266 267 8.964533 AGATTTGTCTAGATATGGATGTACCT 57.035 34.615 0.00 0.00 39.86 3.08
282 283 9.826574 TGGATGTACCTAATACTAAAACATGAC 57.173 33.333 0.00 0.00 39.86 3.06
295 296 8.547967 ACTAAAACATGACTTGATACATTCGT 57.452 30.769 0.00 0.00 0.00 3.85
296 297 9.647797 ACTAAAACATGACTTGATACATTCGTA 57.352 29.630 0.00 0.00 0.00 3.43
300 301 9.773328 AAACATGACTTGATACATTCGTATTTG 57.227 29.630 0.00 0.00 38.48 2.32
301 302 7.919690 ACATGACTTGATACATTCGTATTTGG 58.080 34.615 0.00 0.00 38.48 3.28
302 303 7.768582 ACATGACTTGATACATTCGTATTTGGA 59.231 33.333 0.00 0.00 38.48 3.53
303 304 7.534085 TGACTTGATACATTCGTATTTGGAC 57.466 36.000 0.00 0.00 38.48 4.02
304 305 7.100409 TGACTTGATACATTCGTATTTGGACA 58.900 34.615 0.00 0.00 38.48 4.02
305 306 7.604545 TGACTTGATACATTCGTATTTGGACAA 59.395 33.333 0.00 0.00 38.48 3.18
306 307 8.330466 ACTTGATACATTCGTATTTGGACAAA 57.670 30.769 0.00 0.00 38.48 2.83
307 308 8.956426 ACTTGATACATTCGTATTTGGACAAAT 58.044 29.630 14.02 14.02 42.95 2.32
308 309 9.438291 CTTGATACATTCGTATTTGGACAAATC 57.562 33.333 13.07 5.63 40.99 2.17
309 310 8.731275 TGATACATTCGTATTTGGACAAATCT 57.269 30.769 13.07 0.00 40.99 2.40
310 311 9.825109 TGATACATTCGTATTTGGACAAATCTA 57.175 29.630 13.07 0.00 40.99 1.98
314 315 9.620660 ACATTCGTATTTGGACAAATCTAAAAC 57.379 29.630 13.07 5.74 38.62 2.43
315 316 9.619316 CATTCGTATTTGGACAAATCTAAAACA 57.381 29.630 13.07 0.00 38.62 2.83
317 318 9.672086 TTCGTATTTGGACAAATCTAAAACAAG 57.328 29.630 13.07 0.00 38.62 3.16
318 319 9.058174 TCGTATTTGGACAAATCTAAAACAAGA 57.942 29.630 13.07 0.97 38.62 3.02
319 320 9.672086 CGTATTTGGACAAATCTAAAACAAGAA 57.328 29.630 13.07 0.00 38.62 2.52
325 326 9.323985 TGGACAAATCTAAAACAAGAATTTTGG 57.676 29.630 0.00 0.00 33.04 3.28
326 327 8.773645 GGACAAATCTAAAACAAGAATTTTGGG 58.226 33.333 0.00 0.00 33.04 4.12
327 328 9.541143 GACAAATCTAAAACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.04 4.37
328 329 9.325198 ACAAATCTAAAACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.04 4.46
329 330 8.487176 CAAATCTAAAACAAGAATTTTGGGACG 58.513 33.333 5.68 0.00 33.80 4.79
330 331 6.079424 TCTAAAACAAGAATTTTGGGACGG 57.921 37.500 0.00 0.00 33.80 4.79
331 332 5.828859 TCTAAAACAAGAATTTTGGGACGGA 59.171 36.000 0.00 0.00 33.80 4.69
332 333 4.584327 AAACAAGAATTTTGGGACGGAG 57.416 40.909 0.00 0.00 0.00 4.63
333 334 2.514803 ACAAGAATTTTGGGACGGAGG 58.485 47.619 0.00 0.00 0.00 4.30
334 335 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
335 336 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
336 337 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
442 448 1.470098 CCGTCCATTGCTCCTTCTTTG 59.530 52.381 0.00 0.00 0.00 2.77
454 460 1.068434 CCTTCTTTGCTTTTTCGCCCA 59.932 47.619 0.00 0.00 0.00 5.36
482 488 6.414987 CGAAAATTTCTTTTGTGTCTGTCCTC 59.585 38.462 4.09 0.00 34.73 3.71
528 540 1.662629 GATGAACTGAGTGATGCGTGG 59.337 52.381 0.00 0.00 0.00 4.94
531 543 0.681733 AACTGAGTGATGCGTGGACT 59.318 50.000 0.00 0.00 0.00 3.85
555 567 3.728845 ACAGTAACACATTTCGTCAGCT 58.271 40.909 0.00 0.00 0.00 4.24
613 626 1.197721 GCAAACAACCTCCGATGTCAG 59.802 52.381 0.00 0.00 0.00 3.51
621 634 3.770040 CCGATGTCAGCCCGTCCA 61.770 66.667 0.00 0.00 0.00 4.02
632 651 1.760086 CCCGTCCAGCTCTCATCCT 60.760 63.158 0.00 0.00 0.00 3.24
638 657 1.605992 CAGCTCTCATCCTTGGGCA 59.394 57.895 0.00 0.00 0.00 5.36
644 663 3.094572 CTCTCATCCTTGGGCAAAATGT 58.905 45.455 0.00 0.00 0.00 2.71
662 691 3.790437 CATGCGTGCCCCTCCTCT 61.790 66.667 0.00 0.00 0.00 3.69
664 693 2.606587 ATGCGTGCCCCTCCTCTTT 61.607 57.895 0.00 0.00 0.00 2.52
668 750 1.075659 GTGCCCCTCCTCTTTGCTT 59.924 57.895 0.00 0.00 0.00 3.91
919 2404 1.598517 CACCCCACCTACCCGTAAC 59.401 63.158 0.00 0.00 0.00 2.50
920 2405 1.158227 ACCCCACCTACCCGTAACA 59.842 57.895 0.00 0.00 0.00 2.41
921 2406 0.906282 ACCCCACCTACCCGTAACAG 60.906 60.000 0.00 0.00 0.00 3.16
922 2407 1.619807 CCCCACCTACCCGTAACAGG 61.620 65.000 0.00 0.00 35.45 4.00
923 2408 1.219935 CCACCTACCCGTAACAGGC 59.780 63.158 0.00 0.00 32.31 4.85
985 2475 4.505922 CGATGGATAAAAGAGAGAGCACAC 59.494 45.833 0.00 0.00 0.00 3.82
1088 2597 2.026641 GCCCTATGCTTTGCTGATGAA 58.973 47.619 0.00 0.00 36.87 2.57
1296 2820 6.350445 CCAAGCAGTCTAGGTTTATGCAATTT 60.350 38.462 0.00 0.00 39.34 1.82
1311 2835 9.685828 TTTATGCAATTTTGTTACTAGTTCACC 57.314 29.630 0.00 0.00 0.00 4.02
1316 2840 7.683463 GCAATTTTGTTACTAGTTCACCCTTGT 60.683 37.037 0.00 0.00 0.00 3.16
1366 2903 7.039882 TCATGATGCATGCATGATAGTACTAG 58.960 38.462 36.73 19.22 45.11 2.57
1367 2904 5.173664 TGATGCATGCATGATAGTACTAGC 58.826 41.667 36.73 17.73 36.70 3.42
1368 2905 4.879197 TGCATGCATGATAGTACTAGCT 57.121 40.909 30.64 0.00 0.00 3.32
1369 2906 5.982890 TGCATGCATGATAGTACTAGCTA 57.017 39.130 30.64 6.28 0.00 3.32
1418 2963 2.023673 GCTGGCTGCAATGGTATGTAA 58.976 47.619 11.80 0.00 42.31 2.41
1419 2964 2.624838 GCTGGCTGCAATGGTATGTAAT 59.375 45.455 11.80 0.00 42.31 1.89
1420 2965 3.820467 GCTGGCTGCAATGGTATGTAATA 59.180 43.478 11.80 0.00 42.31 0.98
1421 2966 4.278170 GCTGGCTGCAATGGTATGTAATAA 59.722 41.667 11.80 0.00 42.31 1.40
1439 2984 8.044060 TGTAATAATCTGAAGTTTCTTGCTGG 57.956 34.615 0.00 0.00 0.00 4.85
1646 3493 1.571955 TATCACCAGCAGAGCCTCAA 58.428 50.000 0.00 0.00 0.00 3.02
1668 3518 3.443045 GGTGCGGCTGTTCATGGG 61.443 66.667 0.00 0.00 0.00 4.00
1680 3539 3.105248 CATGGGCATGGAGGGGGA 61.105 66.667 0.00 0.00 35.24 4.81
1681 3540 2.780040 ATGGGCATGGAGGGGGAG 60.780 66.667 0.00 0.00 0.00 4.30
1786 3665 0.324368 TGACCAGAGGTATGGACGCT 60.324 55.000 0.00 0.00 43.57 5.07
1861 3773 0.250424 ATGATGATTCATGGCGGCGA 60.250 50.000 12.98 0.00 41.12 5.54
1869 3781 4.891727 ATGGCGGCGATGACGGAC 62.892 66.667 12.98 0.00 40.15 4.79
1876 3788 2.300787 GCGATGACGGACATACGGC 61.301 63.158 11.46 0.00 43.68 5.68
1979 3891 1.040339 CCCTCTTGACTCCTCCTCCG 61.040 65.000 0.00 0.00 0.00 4.63
2047 3970 4.429212 CGGTCATGTCGGTCGCCA 62.429 66.667 0.00 0.00 0.00 5.69
2328 4273 5.883673 TGGGAAATATCGGTTAGTTTTGGAG 59.116 40.000 0.00 0.00 0.00 3.86
2424 4381 2.322081 CGCGTTTCCATGGTCCGTT 61.322 57.895 12.58 0.00 0.00 4.44
2443 4400 5.682049 CGTTTATATATACGGCTGACTGC 57.318 43.478 15.44 0.00 41.94 4.40
2444 4401 5.399858 CGTTTATATATACGGCTGACTGCT 58.600 41.667 15.44 0.00 42.39 4.24
2680 4658 3.474570 GCGGGAGTGCAGGAGGAT 61.475 66.667 0.00 0.00 34.15 3.24
2836 4823 3.058160 GGAGACCCCGACGACGAA 61.058 66.667 9.28 0.00 42.66 3.85
2941 4937 0.949105 GGCGGAAGAAGCTCAACGAA 60.949 55.000 0.00 0.00 34.52 3.85
2971 4967 4.753662 CTCCGGTCCCTCGTCCCA 62.754 72.222 0.00 0.00 0.00 4.37
3003 5004 6.617371 ACCAAGGTAATCACTATCATCCTTCT 59.383 38.462 0.00 0.00 32.48 2.85
3109 5142 0.870393 GGGACGCGATCGACTACATA 59.130 55.000 21.57 0.00 39.41 2.29
3160 5193 2.680352 GACGAGCTGGAGGACCCA 60.680 66.667 1.44 0.00 44.25 4.51
3165 5198 1.464198 AGCTGGAGGACCCAAACCT 60.464 57.895 0.00 0.00 46.07 3.50
3472 5505 3.483869 GCCCTCGGCCTCCAGATT 61.484 66.667 0.00 0.00 44.06 2.40
3479 5512 1.915228 GGCCTCCAGATTACCAGCA 59.085 57.895 0.00 0.00 0.00 4.41
3593 5632 1.153369 GTTGCAGCCTGCCGATAGA 60.153 57.895 15.29 0.00 44.23 1.98
3619 5662 1.745890 GGTGGGCTTTGGTTGGTTC 59.254 57.895 0.00 0.00 0.00 3.62
3699 5742 1.078823 AGGTGACCAGGGAGATGTACA 59.921 52.381 3.63 0.00 0.00 2.90
3879 5922 3.143728 CTCGCCATGGATTGATTCATCA 58.856 45.455 18.40 0.00 34.44 3.07
3880 5923 3.756963 CTCGCCATGGATTGATTCATCAT 59.243 43.478 18.40 0.00 36.56 2.45
3901 6037 7.924358 TCATCCCCTTTATTACTTGCTACTA 57.076 36.000 0.00 0.00 0.00 1.82
3902 6038 8.506196 TCATCCCCTTTATTACTTGCTACTAT 57.494 34.615 0.00 0.00 0.00 2.12
3903 6039 8.594550 TCATCCCCTTTATTACTTGCTACTATC 58.405 37.037 0.00 0.00 0.00 2.08
3904 6040 6.989659 TCCCCTTTATTACTTGCTACTATCG 58.010 40.000 0.00 0.00 0.00 2.92
3907 6043 7.760340 CCCCTTTATTACTTGCTACTATCGATC 59.240 40.741 0.00 0.00 0.00 3.69
3911 6047 5.762825 TTACTTGCTACTATCGATCGGTT 57.237 39.130 16.41 5.99 0.00 4.44
3926 6062 3.126001 TCGGTTCATGGATGGATTAGC 57.874 47.619 0.00 0.00 0.00 3.09
3930 6066 4.339247 CGGTTCATGGATGGATTAGCTTTT 59.661 41.667 0.00 0.00 0.00 2.27
3991 6130 9.541143 AATTTCATTAACGAAACCAAAGACAAT 57.459 25.926 0.00 0.00 37.69 2.71
3995 6134 8.356657 TCATTAACGAAACCAAAGACAATCATT 58.643 29.630 0.00 0.00 0.00 2.57
4007 6146 8.293867 CCAAAGACAATCATTACTACCGAAAAA 58.706 33.333 0.00 0.00 0.00 1.94
4010 6611 7.391620 AGACAATCATTACTACCGAAAAAGGA 58.608 34.615 0.00 0.00 34.73 3.36
4013 6614 9.020731 ACAATCATTACTACCGAAAAAGGATTT 57.979 29.630 0.00 0.00 42.41 2.17
4025 6626 5.623596 CGAAAAAGGATTTCCCCGCTTTATT 60.624 40.000 0.00 0.00 37.28 1.40
4054 6655 2.677836 CAACCAACACCGATCACATAGG 59.322 50.000 0.00 0.00 0.00 2.57
4062 6663 0.855349 CGATCACATAGGAACGCTGC 59.145 55.000 0.00 0.00 0.00 5.25
4081 6682 2.974148 CGAGCAGCACACCAAGCA 60.974 61.111 0.00 0.00 0.00 3.91
4084 6685 2.026590 GCAGCACACCAAGCACAC 59.973 61.111 0.00 0.00 0.00 3.82
4086 6687 2.035421 CAGCACACCAAGCACACAT 58.965 52.632 0.00 0.00 0.00 3.21
4087 6688 1.237533 CAGCACACCAAGCACACATA 58.762 50.000 0.00 0.00 0.00 2.29
4088 6689 1.198408 CAGCACACCAAGCACACATAG 59.802 52.381 0.00 0.00 0.00 2.23
4089 6690 0.109597 GCACACCAAGCACACATAGC 60.110 55.000 0.00 0.00 0.00 2.97
4091 6692 1.069022 CACACCAAGCACACATAGCAC 60.069 52.381 0.00 0.00 0.00 4.40
4113 6830 2.668212 GCGTACCAAGCAGCACCA 60.668 61.111 0.00 0.00 34.19 4.17
4122 6839 0.106708 AAGCAGCACCACGAAGAAGA 59.893 50.000 0.00 0.00 0.00 2.87
4127 6844 2.549754 CAGCACCACGAAGAAGAAATGT 59.450 45.455 0.00 0.00 0.00 2.71
4146 6867 3.751401 GATGCCGACGACGCTGCTA 62.751 63.158 0.64 0.00 38.29 3.49
4147 6868 3.350909 ATGCCGACGACGCTGCTAA 62.351 57.895 0.64 0.00 38.29 3.09
4180 6901 4.759205 GGTTTCCCCCGGCATGCT 62.759 66.667 18.92 0.00 0.00 3.79
4182 6903 4.757355 TTTCCCCCGGCATGCTGG 62.757 66.667 34.88 34.88 42.03 4.85
4216 6937 4.101448 GGGCTGAGCACCACCGAT 62.101 66.667 6.82 0.00 0.00 4.18
4321 7045 0.898320 CTCCACTGTCCAACCGATCT 59.102 55.000 0.00 0.00 0.00 2.75
4338 7062 1.002069 TCTGGAGCCAACCATCCAAT 58.998 50.000 0.00 0.00 44.82 3.16
4358 7082 0.325272 TTGCCGCCTACCAACATGTA 59.675 50.000 0.00 0.00 0.00 2.29
4378 7102 1.003355 CACCACGGTCTTGATGCCT 60.003 57.895 0.00 0.00 0.00 4.75
4382 7106 2.202932 CGGTCTTGATGCCTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
4389 7113 3.917760 GATGCCTCCCGCGCTACT 61.918 66.667 5.56 0.00 42.08 2.57
4395 7119 2.752640 TCCCGCGCTACTGCACTA 60.753 61.111 5.56 0.00 39.64 2.74
4439 7163 3.452786 CGGAGAGAGGAGCGCCAA 61.453 66.667 9.88 0.00 36.29 4.52
4517 7242 2.360191 GGAAGCCCATGCCTCCAA 59.640 61.111 0.00 0.00 45.84 3.53
4561 7288 0.177141 GCGGCAACAGGTATACCAGA 59.823 55.000 23.87 0.00 38.89 3.86
4569 7298 2.225805 ACAGGTATACCAGACCACCCTT 60.226 50.000 23.87 0.00 39.65 3.95
4601 7330 2.128507 AAAAACGGGCCCGCAAAGA 61.129 52.632 43.58 0.00 44.19 2.52
4612 7341 2.934277 CGCAAAGACGGCATCAATG 58.066 52.632 0.00 0.00 0.00 2.82
4622 7351 3.286407 CATCAATGCCGCCACCAA 58.714 55.556 0.00 0.00 0.00 3.67
4623 7352 1.153784 CATCAATGCCGCCACCAAC 60.154 57.895 0.00 0.00 0.00 3.77
4624 7353 2.350458 ATCAATGCCGCCACCAACC 61.350 57.895 0.00 0.00 0.00 3.77
4625 7354 4.067913 CAATGCCGCCACCAACCC 62.068 66.667 0.00 0.00 0.00 4.11
4626 7355 4.612279 AATGCCGCCACCAACCCA 62.612 61.111 0.00 0.00 0.00 4.51
4627 7356 4.612279 ATGCCGCCACCAACCCAA 62.612 61.111 0.00 0.00 0.00 4.12
4638 7367 4.699522 AACCCAACGCCGCTCCTC 62.700 66.667 0.00 0.00 0.00 3.71
4650 7379 3.474570 CTCCTCCGCCCCTGGAAG 61.475 72.222 0.00 0.00 37.64 3.46
4659 7388 4.113815 CCCTGGAAGCCATGCCGA 62.114 66.667 0.00 0.00 30.82 5.54
4660 7389 2.825836 CCTGGAAGCCATGCCGAC 60.826 66.667 0.00 0.00 30.82 4.79
4661 7390 2.046023 CTGGAAGCCATGCCGACA 60.046 61.111 0.00 0.00 30.82 4.35
4662 7391 1.675310 CTGGAAGCCATGCCGACAA 60.675 57.895 0.00 0.00 30.82 3.18
4663 7392 1.926511 CTGGAAGCCATGCCGACAAC 61.927 60.000 0.00 0.00 30.82 3.32
4664 7393 1.675641 GGAAGCCATGCCGACAACT 60.676 57.895 0.00 0.00 0.00 3.16
4665 7394 1.648467 GGAAGCCATGCCGACAACTC 61.648 60.000 0.00 0.00 0.00 3.01
4666 7395 0.955428 GAAGCCATGCCGACAACTCA 60.955 55.000 0.00 0.00 0.00 3.41
4667 7396 1.237285 AAGCCATGCCGACAACTCAC 61.237 55.000 0.00 0.00 0.00 3.51
4668 7397 2.690778 GCCATGCCGACAACTCACC 61.691 63.158 0.00 0.00 0.00 4.02
4669 7398 2.040544 CCATGCCGACAACTCACCC 61.041 63.158 0.00 0.00 0.00 4.61
4670 7399 2.040544 CATGCCGACAACTCACCCC 61.041 63.158 0.00 0.00 0.00 4.95
4671 7400 2.525124 ATGCCGACAACTCACCCCA 61.525 57.895 0.00 0.00 0.00 4.96
4672 7401 2.668550 GCCGACAACTCACCCCAC 60.669 66.667 0.00 0.00 0.00 4.61
4673 7402 2.032071 CCGACAACTCACCCCACC 59.968 66.667 0.00 0.00 0.00 4.61
4674 7403 2.357034 CGACAACTCACCCCACCG 60.357 66.667 0.00 0.00 0.00 4.94
4675 7404 2.668550 GACAACTCACCCCACCGC 60.669 66.667 0.00 0.00 0.00 5.68
4676 7405 4.265056 ACAACTCACCCCACCGCC 62.265 66.667 0.00 0.00 0.00 6.13
4696 7425 4.181010 CCCGCCCAGACCCAGATG 62.181 72.222 0.00 0.00 0.00 2.90
4697 7426 4.181010 CCGCCCAGACCCAGATGG 62.181 72.222 0.00 0.00 41.37 3.51
4698 7427 4.864334 CGCCCAGACCCAGATGGC 62.864 72.222 0.00 0.00 37.83 4.40
4699 7428 4.512914 GCCCAGACCCAGATGGCC 62.513 72.222 0.00 0.00 37.83 5.36
4700 7429 2.693864 CCCAGACCCAGATGGCCT 60.694 66.667 3.32 0.00 37.83 5.19
4701 7430 1.384502 CCCAGACCCAGATGGCCTA 60.385 63.158 3.32 0.00 37.83 3.93
4702 7431 1.414061 CCCAGACCCAGATGGCCTAG 61.414 65.000 3.32 0.00 37.83 3.02
4703 7432 0.399091 CCAGACCCAGATGGCCTAGA 60.399 60.000 3.32 0.00 37.83 2.43
4704 7433 1.727062 CAGACCCAGATGGCCTAGAT 58.273 55.000 3.32 0.00 37.83 1.98
4705 7434 1.622811 CAGACCCAGATGGCCTAGATC 59.377 57.143 3.32 0.00 37.83 2.75
4706 7435 1.507300 AGACCCAGATGGCCTAGATCT 59.493 52.381 3.32 0.00 37.83 2.75
4707 7436 1.622811 GACCCAGATGGCCTAGATCTG 59.377 57.143 19.92 19.92 44.43 2.90
4715 7444 3.055580 CCTAGATCTGGGCCGAGC 58.944 66.667 12.76 0.00 0.00 5.03
4716 7445 2.647875 CTAGATCTGGGCCGAGCG 59.352 66.667 10.42 0.00 0.00 5.03
4717 7446 2.912542 TAGATCTGGGCCGAGCGG 60.913 66.667 10.42 4.20 38.57 5.52
4819 7548 4.764771 ACCACCGCCGCCTAGGTA 62.765 66.667 11.31 0.00 43.70 3.08
4820 7549 4.217159 CCACCGCCGCCTAGGTAC 62.217 72.222 11.31 0.00 43.70 3.34
4821 7550 3.454573 CACCGCCGCCTAGGTACA 61.455 66.667 11.31 0.00 43.70 2.90
4822 7551 2.443390 ACCGCCGCCTAGGTACAT 60.443 61.111 11.31 0.00 43.70 2.29
4823 7552 2.062177 ACCGCCGCCTAGGTACATT 61.062 57.895 11.31 0.00 43.70 2.71
4824 7553 1.300697 CCGCCGCCTAGGTACATTC 60.301 63.158 11.31 0.00 43.70 2.67
4825 7554 1.300697 CGCCGCCTAGGTACATTCC 60.301 63.158 11.31 0.00 43.70 3.01
4826 7555 1.070957 GCCGCCTAGGTACATTCCC 59.929 63.158 11.31 0.00 43.70 3.97
4827 7556 1.692173 GCCGCCTAGGTACATTCCCA 61.692 60.000 11.31 0.00 43.70 4.37
4828 7557 1.056660 CCGCCTAGGTACATTCCCAT 58.943 55.000 11.31 0.00 34.51 4.00
4829 7558 1.270839 CCGCCTAGGTACATTCCCATG 60.271 57.143 11.31 0.00 33.99 3.66
4830 7559 1.878102 CGCCTAGGTACATTCCCATGC 60.878 57.143 11.31 0.00 33.05 4.06
4831 7560 1.878102 GCCTAGGTACATTCCCATGCG 60.878 57.143 11.31 0.00 33.05 4.73
4832 7561 1.512926 CTAGGTACATTCCCATGCGC 58.487 55.000 0.00 0.00 33.05 6.09
4833 7562 0.107831 TAGGTACATTCCCATGCGCC 59.892 55.000 4.18 0.00 33.05 6.53
4834 7563 2.542907 GGTACATTCCCATGCGCCG 61.543 63.158 4.18 0.00 33.05 6.46
4835 7564 2.899838 TACATTCCCATGCGCCGC 60.900 61.111 4.18 0.00 33.05 6.53
4862 7591 2.076582 GCATCAGCGTGACACTGAG 58.923 57.895 9.34 3.22 46.71 3.35
4863 7592 0.389037 GCATCAGCGTGACACTGAGA 60.389 55.000 9.34 0.00 46.71 3.27
4864 7593 1.936656 GCATCAGCGTGACACTGAGAA 60.937 52.381 9.34 0.00 46.71 2.87
4865 7594 1.991264 CATCAGCGTGACACTGAGAAG 59.009 52.381 9.34 0.00 46.71 2.85
4866 7595 1.318576 TCAGCGTGACACTGAGAAGA 58.681 50.000 0.00 0.00 39.21 2.87
4867 7596 1.268079 TCAGCGTGACACTGAGAAGAG 59.732 52.381 0.00 0.00 39.21 2.85
4868 7597 1.268079 CAGCGTGACACTGAGAAGAGA 59.732 52.381 3.68 0.00 37.32 3.10
4869 7598 1.957177 AGCGTGACACTGAGAAGAGAA 59.043 47.619 3.68 0.00 0.00 2.87
4870 7599 2.362397 AGCGTGACACTGAGAAGAGAAA 59.638 45.455 3.68 0.00 0.00 2.52
4871 7600 2.728839 GCGTGACACTGAGAAGAGAAAG 59.271 50.000 3.68 0.00 0.00 2.62
4872 7601 3.312828 CGTGACACTGAGAAGAGAAAGG 58.687 50.000 3.68 0.00 0.00 3.11
4873 7602 3.063485 GTGACACTGAGAAGAGAAAGGC 58.937 50.000 0.00 0.00 0.00 4.35
4874 7603 2.037772 TGACACTGAGAAGAGAAAGGCC 59.962 50.000 0.00 0.00 0.00 5.19
4875 7604 2.037772 GACACTGAGAAGAGAAAGGCCA 59.962 50.000 5.01 0.00 0.00 5.36
4876 7605 2.038295 ACACTGAGAAGAGAAAGGCCAG 59.962 50.000 5.01 0.00 0.00 4.85
4877 7606 1.627834 ACTGAGAAGAGAAAGGCCAGG 59.372 52.381 5.01 0.00 0.00 4.45
4878 7607 0.987294 TGAGAAGAGAAAGGCCAGGG 59.013 55.000 5.01 0.00 0.00 4.45
4879 7608 0.254462 GAGAAGAGAAAGGCCAGGGG 59.746 60.000 5.01 0.00 0.00 4.79
4929 7658 4.451150 GGATGCCACCGACAGCGA 62.451 66.667 0.00 0.00 40.82 4.93
4930 7659 2.202932 GATGCCACCGACAGCGAT 60.203 61.111 0.00 0.00 40.82 4.58
4931 7660 2.512286 ATGCCACCGACAGCGATG 60.512 61.111 0.00 0.00 40.82 3.84
4932 7661 4.758251 TGCCACCGACAGCGATGG 62.758 66.667 5.32 0.00 40.82 3.51
4934 7663 3.770040 CCACCGACAGCGATGGGA 61.770 66.667 5.32 0.00 40.82 4.37
4935 7664 2.264480 CACCGACAGCGATGGGAA 59.736 61.111 5.32 0.00 40.82 3.97
4936 7665 1.811266 CACCGACAGCGATGGGAAG 60.811 63.158 5.32 0.00 40.82 3.46
4937 7666 2.202932 CCGACAGCGATGGGAAGG 60.203 66.667 5.32 0.00 40.82 3.46
4938 7667 2.721167 CCGACAGCGATGGGAAGGA 61.721 63.158 5.32 0.00 40.82 3.36
4939 7668 1.218047 CGACAGCGATGGGAAGGAA 59.782 57.895 5.32 0.00 40.82 3.36
4940 7669 1.084370 CGACAGCGATGGGAAGGAAC 61.084 60.000 5.32 0.00 40.82 3.62
4941 7670 1.079127 ACAGCGATGGGAAGGAACG 60.079 57.895 5.32 0.00 0.00 3.95
4942 7671 1.218047 CAGCGATGGGAAGGAACGA 59.782 57.895 0.00 0.00 0.00 3.85
4943 7672 0.807667 CAGCGATGGGAAGGAACGAG 60.808 60.000 0.00 0.00 0.00 4.18
4944 7673 2.174319 GCGATGGGAAGGAACGAGC 61.174 63.158 0.00 0.00 0.00 5.03
4945 7674 1.517832 CGATGGGAAGGAACGAGCT 59.482 57.895 0.00 0.00 0.00 4.09
4946 7675 0.807667 CGATGGGAAGGAACGAGCTG 60.808 60.000 0.00 0.00 0.00 4.24
4947 7676 0.462759 GATGGGAAGGAACGAGCTGG 60.463 60.000 0.00 0.00 0.00 4.85
4948 7677 1.915078 ATGGGAAGGAACGAGCTGGG 61.915 60.000 0.00 0.00 0.00 4.45
4949 7678 2.269241 GGAAGGAACGAGCTGGGG 59.731 66.667 0.00 0.00 0.00 4.96
4950 7679 2.291043 GGAAGGAACGAGCTGGGGA 61.291 63.158 0.00 0.00 0.00 4.81
4951 7680 1.219393 GAAGGAACGAGCTGGGGAG 59.781 63.158 0.00 0.00 0.00 4.30
4952 7681 2.245438 GAAGGAACGAGCTGGGGAGG 62.245 65.000 0.00 0.00 0.00 4.30
4953 7682 2.683933 GGAACGAGCTGGGGAGGA 60.684 66.667 0.00 0.00 0.00 3.71
4954 7683 2.726351 GGAACGAGCTGGGGAGGAG 61.726 68.421 0.00 0.00 0.00 3.69
4955 7684 3.378399 GAACGAGCTGGGGAGGAGC 62.378 68.421 0.00 0.00 36.65 4.70
4989 7718 3.077556 CCACGAGTGGGGAGGAGG 61.078 72.222 14.19 0.00 46.81 4.30
4990 7719 3.077556 CACGAGTGGGGAGGAGGG 61.078 72.222 0.00 0.00 0.00 4.30
4991 7720 4.400251 ACGAGTGGGGAGGAGGGG 62.400 72.222 0.00 0.00 0.00 4.79
4992 7721 4.400251 CGAGTGGGGAGGAGGGGT 62.400 72.222 0.00 0.00 0.00 4.95
4993 7722 2.125225 GAGTGGGGAGGAGGGGTT 59.875 66.667 0.00 0.00 0.00 4.11
4994 7723 1.394963 GAGTGGGGAGGAGGGGTTA 59.605 63.158 0.00 0.00 0.00 2.85
4995 7724 0.253020 GAGTGGGGAGGAGGGGTTAA 60.253 60.000 0.00 0.00 0.00 2.01
4996 7725 0.197661 AGTGGGGAGGAGGGGTTAAA 59.802 55.000 0.00 0.00 0.00 1.52
4997 7726 0.624254 GTGGGGAGGAGGGGTTAAAG 59.376 60.000 0.00 0.00 0.00 1.85
4998 7727 0.499147 TGGGGAGGAGGGGTTAAAGA 59.501 55.000 0.00 0.00 0.00 2.52
4999 7728 0.917533 GGGGAGGAGGGGTTAAAGAC 59.082 60.000 0.00 0.00 0.00 3.01
5000 7729 1.665137 GGGAGGAGGGGTTAAAGACA 58.335 55.000 0.00 0.00 0.00 3.41
5001 7730 1.990327 GGGAGGAGGGGTTAAAGACAA 59.010 52.381 0.00 0.00 0.00 3.18
5002 7731 2.290768 GGGAGGAGGGGTTAAAGACAAC 60.291 54.545 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.624452 GCTTGAATTTAGCTTTCCTGCTTG 59.376 41.667 0.00 0.00 43.74 4.01
2 3 3.828451 TGCTTGAATTTAGCTTTCCTGCT 59.172 39.130 12.82 0.00 46.11 4.24
3 4 3.922850 GTGCTTGAATTTAGCTTTCCTGC 59.077 43.478 12.82 0.00 39.38 4.85
4 5 4.083324 TCGTGCTTGAATTTAGCTTTCCTG 60.083 41.667 12.82 0.00 39.38 3.86
6 7 4.419522 TCGTGCTTGAATTTAGCTTTCC 57.580 40.909 12.82 1.42 39.38 3.13
8 9 4.024387 TCGTTCGTGCTTGAATTTAGCTTT 60.024 37.500 12.82 0.00 39.38 3.51
9 10 3.496884 TCGTTCGTGCTTGAATTTAGCTT 59.503 39.130 12.82 0.00 39.38 3.74
10 11 3.064207 TCGTTCGTGCTTGAATTTAGCT 58.936 40.909 12.82 0.00 39.38 3.32
13 14 4.778904 CCTTTCGTTCGTGCTTGAATTTA 58.221 39.130 0.00 0.00 0.00 1.40
14 15 3.628017 CCTTTCGTTCGTGCTTGAATTT 58.372 40.909 0.00 0.00 0.00 1.82
16 17 1.069227 GCCTTTCGTTCGTGCTTGAAT 60.069 47.619 0.00 0.00 0.00 2.57
17 18 0.306533 GCCTTTCGTTCGTGCTTGAA 59.693 50.000 0.00 0.00 0.00 2.69
18 19 1.503818 GGCCTTTCGTTCGTGCTTGA 61.504 55.000 0.00 0.00 0.00 3.02
19 20 1.082104 GGCCTTTCGTTCGTGCTTG 60.082 57.895 0.00 0.00 0.00 4.01
20 21 1.098712 TTGGCCTTTCGTTCGTGCTT 61.099 50.000 3.32 0.00 0.00 3.91
21 22 1.507141 CTTGGCCTTTCGTTCGTGCT 61.507 55.000 3.32 0.00 0.00 4.40
22 23 1.082104 CTTGGCCTTTCGTTCGTGC 60.082 57.895 3.32 0.00 0.00 5.34
23 24 0.661020 AACTTGGCCTTTCGTTCGTG 59.339 50.000 3.32 0.00 0.00 4.35
27 28 3.072211 GCTAGTAACTTGGCCTTTCGTT 58.928 45.455 3.32 4.57 0.00 3.85
28 29 2.696506 GCTAGTAACTTGGCCTTTCGT 58.303 47.619 3.32 0.00 0.00 3.85
132 133 6.069331 AGAGGTAGTGAGTAGTGACAGAAAA 58.931 40.000 0.00 0.00 0.00 2.29
133 134 5.632118 AGAGGTAGTGAGTAGTGACAGAAA 58.368 41.667 0.00 0.00 0.00 2.52
134 135 5.244189 AGAGGTAGTGAGTAGTGACAGAA 57.756 43.478 0.00 0.00 0.00 3.02
135 136 4.912317 AGAGGTAGTGAGTAGTGACAGA 57.088 45.455 0.00 0.00 0.00 3.41
136 137 6.408035 TCTTAGAGGTAGTGAGTAGTGACAG 58.592 44.000 0.00 0.00 0.00 3.51
137 138 6.370186 TCTTAGAGGTAGTGAGTAGTGACA 57.630 41.667 0.00 0.00 0.00 3.58
138 139 6.183360 CGTTCTTAGAGGTAGTGAGTAGTGAC 60.183 46.154 0.00 0.00 0.00 3.67
139 140 5.873712 CGTTCTTAGAGGTAGTGAGTAGTGA 59.126 44.000 0.00 0.00 0.00 3.41
140 141 5.642919 ACGTTCTTAGAGGTAGTGAGTAGTG 59.357 44.000 0.00 0.00 0.00 2.74
141 142 5.803552 ACGTTCTTAGAGGTAGTGAGTAGT 58.196 41.667 0.00 0.00 0.00 2.73
143 144 6.699204 CGATACGTTCTTAGAGGTAGTGAGTA 59.301 42.308 0.00 0.00 0.00 2.59
144 145 5.523188 CGATACGTTCTTAGAGGTAGTGAGT 59.477 44.000 0.00 0.00 0.00 3.41
163 164 7.953158 TTTTTCATCATCTGGAGATCGATAC 57.047 36.000 0.00 0.00 31.21 2.24
192 193 0.319727 TAAGGCGAAACGAAAGCGGA 60.320 50.000 0.00 0.00 43.17 5.54
193 194 0.725117 ATAAGGCGAAACGAAAGCGG 59.275 50.000 0.00 0.00 43.17 5.52
210 211 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
211 212 2.191981 ATTTGGGACGGAGGGAGTAT 57.808 50.000 0.00 0.00 0.00 2.12
212 213 1.961133 AATTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
213 214 1.004394 GAAATTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
214 215 1.282157 AGAAATTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
215 216 1.368374 AGAAATTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
216 217 1.818674 CAAGAAATTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
217 218 2.488153 GACAAGAAATTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
218 219 3.412386 AGACAAGAAATTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
219 220 3.502123 AGACAAGAAATTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
220 221 5.001232 TCTAAGACAAGAAATTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
221 222 6.743575 ATCTAAGACAAGAAATTTGGGACG 57.256 37.500 0.00 0.00 0.00 4.79
222 223 8.360390 ACAAATCTAAGACAAGAAATTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
223 224 8.477419 ACAAATCTAAGACAAGAAATTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
224 225 8.579863 AGACAAATCTAAGACAAGAAATTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
241 242 8.964533 AGGTACATCCATATCTAGACAAATCT 57.035 34.615 0.00 0.00 39.02 2.40
256 257 9.826574 GTCATGTTTTAGTATTAGGTACATCCA 57.173 33.333 0.00 0.00 39.02 3.41
269 270 9.647797 ACGAATGTATCAAGTCATGTTTTAGTA 57.352 29.630 0.00 0.00 0.00 1.82
270 271 8.547967 ACGAATGTATCAAGTCATGTTTTAGT 57.452 30.769 0.00 0.00 0.00 2.24
274 275 9.773328 CAAATACGAATGTATCAAGTCATGTTT 57.227 29.630 0.00 0.00 40.42 2.83
275 276 8.397906 CCAAATACGAATGTATCAAGTCATGTT 58.602 33.333 0.00 0.00 40.42 2.71
276 277 7.768582 TCCAAATACGAATGTATCAAGTCATGT 59.231 33.333 0.00 0.00 40.42 3.21
277 278 8.064222 GTCCAAATACGAATGTATCAAGTCATG 58.936 37.037 0.00 0.00 40.42 3.07
278 279 7.768582 TGTCCAAATACGAATGTATCAAGTCAT 59.231 33.333 0.00 0.00 40.42 3.06
279 280 7.100409 TGTCCAAATACGAATGTATCAAGTCA 58.900 34.615 0.00 0.00 40.42 3.41
280 281 7.534085 TGTCCAAATACGAATGTATCAAGTC 57.466 36.000 0.00 0.00 40.42 3.01
281 282 7.915293 TTGTCCAAATACGAATGTATCAAGT 57.085 32.000 0.00 0.00 40.42 3.16
282 283 9.438291 GATTTGTCCAAATACGAATGTATCAAG 57.562 33.333 5.29 0.00 40.42 3.02
283 284 9.173021 AGATTTGTCCAAATACGAATGTATCAA 57.827 29.630 5.29 0.00 40.42 2.57
284 285 8.731275 AGATTTGTCCAAATACGAATGTATCA 57.269 30.769 5.29 0.00 40.42 2.15
288 289 9.620660 GTTTTAGATTTGTCCAAATACGAATGT 57.379 29.630 5.29 0.00 40.77 2.71
289 290 9.619316 TGTTTTAGATTTGTCCAAATACGAATG 57.381 29.630 5.29 0.00 40.77 2.67
291 292 9.672086 CTTGTTTTAGATTTGTCCAAATACGAA 57.328 29.630 5.29 0.00 40.77 3.85
292 293 9.058174 TCTTGTTTTAGATTTGTCCAAATACGA 57.942 29.630 5.29 0.30 40.77 3.43
293 294 9.672086 TTCTTGTTTTAGATTTGTCCAAATACG 57.328 29.630 5.29 0.00 40.77 3.06
299 300 9.323985 CCAAAATTCTTGTTTTAGATTTGTCCA 57.676 29.630 0.00 0.00 28.79 4.02
300 301 8.773645 CCCAAAATTCTTGTTTTAGATTTGTCC 58.226 33.333 0.00 0.00 28.79 4.02
301 302 9.541143 TCCCAAAATTCTTGTTTTAGATTTGTC 57.459 29.630 0.00 0.00 28.79 3.18
302 303 9.325198 GTCCCAAAATTCTTGTTTTAGATTTGT 57.675 29.630 0.00 0.00 28.79 2.83
303 304 8.487176 CGTCCCAAAATTCTTGTTTTAGATTTG 58.513 33.333 0.00 0.00 30.56 2.32
304 305 7.655732 CCGTCCCAAAATTCTTGTTTTAGATTT 59.344 33.333 0.00 0.00 30.56 2.17
305 306 7.014808 TCCGTCCCAAAATTCTTGTTTTAGATT 59.985 33.333 0.00 0.00 30.56 2.40
306 307 6.492087 TCCGTCCCAAAATTCTTGTTTTAGAT 59.508 34.615 0.00 0.00 30.56 1.98
307 308 5.828859 TCCGTCCCAAAATTCTTGTTTTAGA 59.171 36.000 0.00 0.00 30.56 2.10
308 309 6.079424 TCCGTCCCAAAATTCTTGTTTTAG 57.921 37.500 0.00 0.00 30.56 1.85
309 310 5.010213 CCTCCGTCCCAAAATTCTTGTTTTA 59.990 40.000 0.00 0.00 30.56 1.52
310 311 4.202212 CCTCCGTCCCAAAATTCTTGTTTT 60.202 41.667 0.00 0.00 0.00 2.43
311 312 3.320826 CCTCCGTCCCAAAATTCTTGTTT 59.679 43.478 0.00 0.00 0.00 2.83
312 313 2.890945 CCTCCGTCCCAAAATTCTTGTT 59.109 45.455 0.00 0.00 0.00 2.83
313 314 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
314 315 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
315 316 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
316 317 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
317 318 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
318 319 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
319 320 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
320 321 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
321 322 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
322 323 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
323 324 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
324 325 2.149973 TTTAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
325 326 5.859205 TTATTTTAGTACTCCCTCCGTCC 57.141 43.478 0.00 0.00 0.00 4.79
326 327 5.752472 GCTTTATTTTAGTACTCCCTCCGTC 59.248 44.000 0.00 0.00 0.00 4.79
327 328 5.188359 TGCTTTATTTTAGTACTCCCTCCGT 59.812 40.000 0.00 0.00 0.00 4.69
328 329 5.667466 TGCTTTATTTTAGTACTCCCTCCG 58.333 41.667 0.00 0.00 0.00 4.63
329 330 6.038382 GCTTGCTTTATTTTAGTACTCCCTCC 59.962 42.308 0.00 0.00 0.00 4.30
330 331 6.598064 TGCTTGCTTTATTTTAGTACTCCCTC 59.402 38.462 0.00 0.00 0.00 4.30
331 332 6.481643 TGCTTGCTTTATTTTAGTACTCCCT 58.518 36.000 0.00 0.00 0.00 4.20
332 333 6.753107 TGCTTGCTTTATTTTAGTACTCCC 57.247 37.500 0.00 0.00 0.00 4.30
454 460 7.860872 GGACAGACACAAAAGAAATTTTCGTAT 59.139 33.333 3.57 0.00 34.02 3.06
468 474 3.964688 TCACCTAAGAGGACAGACACAAA 59.035 43.478 0.00 0.00 37.67 2.83
482 488 6.218746 TCATCATGATCGTTCATCACCTAAG 58.781 40.000 4.86 0.00 44.70 2.18
528 540 5.688621 TGACGAAATGTGTTACTGTACAGTC 59.311 40.000 31.11 18.50 42.54 3.51
531 543 4.446385 GCTGACGAAATGTGTTACTGTACA 59.554 41.667 0.00 0.00 0.00 2.90
555 567 2.168313 TGCTTCGCTGGTGAAGATATCA 59.832 45.455 22.88 11.28 46.64 2.15
613 626 2.107953 GATGAGAGCTGGACGGGC 59.892 66.667 0.00 0.00 0.00 6.13
621 634 0.700564 TTTGCCCAAGGATGAGAGCT 59.299 50.000 0.00 0.00 0.00 4.09
632 651 0.678395 ACGCATGACATTTTGCCCAA 59.322 45.000 0.00 0.00 35.41 4.12
638 657 0.899717 AGGGGCACGCATGACATTTT 60.900 50.000 0.00 0.00 46.88 1.82
644 663 3.785859 GAGGAGGGGCACGCATGA 61.786 66.667 0.00 0.00 46.88 3.07
662 691 4.321452 GCCACTTTCTCATGATCAAGCAAA 60.321 41.667 0.00 0.00 0.00 3.68
664 693 2.751259 GCCACTTTCTCATGATCAAGCA 59.249 45.455 0.00 0.00 0.00 3.91
668 750 3.244665 ACACTGCCACTTTCTCATGATCA 60.245 43.478 0.00 0.00 0.00 2.92
854 2333 0.604511 CCACACCCCGGTACAACTTC 60.605 60.000 0.00 0.00 0.00 3.01
860 2339 1.170442 CAAAATCCACACCCCGGTAC 58.830 55.000 0.00 0.00 0.00 3.34
861 2340 1.065647 TCAAAATCCACACCCCGGTA 58.934 50.000 0.00 0.00 0.00 4.02
864 2343 3.230743 GATTTCAAAATCCACACCCCG 57.769 47.619 4.44 0.00 39.04 5.73
922 2407 0.318275 CTCGATCGGAGGCTGTTAGC 60.318 60.000 16.41 0.00 41.46 3.09
923 2408 0.318275 GCTCGATCGGAGGCTGTTAG 60.318 60.000 16.41 2.67 43.36 2.34
985 2475 6.459298 GGTGAAAACCTGATGATTAGCATGAG 60.459 42.308 0.00 0.00 37.89 2.90
1088 2597 1.771565 CAGGGGTGTTGCATCATCAT 58.228 50.000 10.12 0.00 0.00 2.45
1199 2715 4.925861 GAGGCTGCCTGGCGATCC 62.926 72.222 28.82 14.20 46.88 3.36
1207 2725 0.908198 CCTTTCAGTAGAGGCTGCCT 59.092 55.000 23.64 23.64 36.49 4.75
1296 2820 7.393796 TCAAAAACAAGGGTGAACTAGTAACAA 59.606 33.333 0.00 0.00 0.00 2.83
1311 2835 4.553323 CAAGCAGAGGATCAAAAACAAGG 58.447 43.478 0.00 0.00 37.82 3.61
1316 2840 3.489355 TCAGCAAGCAGAGGATCAAAAA 58.511 40.909 0.00 0.00 37.82 1.94
1410 2947 9.937175 GCAAGAAACTTCAGATTATTACATACC 57.063 33.333 0.00 0.00 0.00 2.73
1418 2963 4.400567 GGCCAGCAAGAAACTTCAGATTAT 59.599 41.667 0.00 0.00 0.00 1.28
1419 2964 3.758554 GGCCAGCAAGAAACTTCAGATTA 59.241 43.478 0.00 0.00 0.00 1.75
1420 2965 2.560105 GGCCAGCAAGAAACTTCAGATT 59.440 45.455 0.00 0.00 0.00 2.40
1421 2966 2.165998 GGCCAGCAAGAAACTTCAGAT 58.834 47.619 0.00 0.00 0.00 2.90
1437 2982 4.248842 CACCGGTGTCACAGGCCA 62.249 66.667 26.95 0.00 36.91 5.36
1439 2984 2.665185 GTCACCGGTGTCACAGGC 60.665 66.667 32.74 5.19 36.91 4.85
1504 3053 2.032894 CCATGCATACGTAAGGCTTTCG 60.033 50.000 22.20 22.20 46.39 3.46
1514 3063 5.334337 CGATCAATTCAATCCATGCATACGT 60.334 40.000 0.00 0.00 0.00 3.57
1786 3665 1.577468 AATCGAACACACACGCAGAA 58.423 45.000 0.00 0.00 0.00 3.02
1861 3773 1.327690 ACCTGCCGTATGTCCGTCAT 61.328 55.000 0.00 0.00 40.25 3.06
1869 3781 1.207089 TCTCCAAGAACCTGCCGTATG 59.793 52.381 0.00 0.00 0.00 2.39
1876 3788 0.745845 CCGCCATCTCCAAGAACCTG 60.746 60.000 0.00 0.00 0.00 4.00
1948 3860 0.750911 CAAGAGGGATGGAGCAAGGC 60.751 60.000 0.00 0.00 0.00 4.35
1979 3891 4.259356 AGAAGCCAGTTTAATTACCCGAC 58.741 43.478 0.00 0.00 0.00 4.79
2042 3965 1.745232 AACTTAATGGCGATTGGCGA 58.255 45.000 3.95 0.00 44.92 5.54
2043 3966 2.559998 AAACTTAATGGCGATTGGCG 57.440 45.000 3.95 0.00 44.92 5.69
2044 3967 2.929398 CCAAAACTTAATGGCGATTGGC 59.071 45.455 3.95 0.00 42.51 4.52
2045 3968 4.173256 GACCAAAACTTAATGGCGATTGG 58.827 43.478 3.95 0.00 40.51 3.16
2046 3969 3.851403 CGACCAAAACTTAATGGCGATTG 59.149 43.478 3.95 0.00 40.51 2.67
2047 3970 3.119637 CCGACCAAAACTTAATGGCGATT 60.120 43.478 0.00 0.00 40.51 3.34
2328 4273 1.143401 GGCGTGCTCCCTAACTACC 59.857 63.158 0.00 0.00 0.00 3.18
2441 4398 1.374631 GCACCGAGTCATGTCAGCA 60.375 57.895 0.00 0.00 0.00 4.41
2442 4399 2.447887 CGCACCGAGTCATGTCAGC 61.448 63.158 0.00 0.00 0.00 4.26
2443 4400 0.179127 ATCGCACCGAGTCATGTCAG 60.179 55.000 0.00 0.00 39.91 3.51
2444 4401 0.246360 AATCGCACCGAGTCATGTCA 59.754 50.000 0.00 0.00 39.91 3.58
2445 4402 2.203800 TAATCGCACCGAGTCATGTC 57.796 50.000 0.00 0.00 39.91 3.06
2446 4403 2.665649 TTAATCGCACCGAGTCATGT 57.334 45.000 0.00 0.00 39.91 3.21
2447 4404 2.348872 GCATTAATCGCACCGAGTCATG 60.349 50.000 5.27 5.27 39.91 3.07
2448 4405 1.867233 GCATTAATCGCACCGAGTCAT 59.133 47.619 5.38 0.00 39.91 3.06
2494 4457 3.963687 CTGCGCCATGACCAGCTCA 62.964 63.158 4.18 0.00 0.00 4.26
2821 4808 2.282040 ACTTCGTCGTCGGGGTCT 60.282 61.111 1.55 0.00 37.69 3.85
2926 4922 0.164002 GGCGTTCGTTGAGCTTCTTC 59.836 55.000 0.00 0.00 0.00 2.87
2941 4937 2.711922 CCGGAGCTTGTAGAGGCGT 61.712 63.158 0.00 0.00 0.00 5.68
2971 4967 9.920946 ATGATAGTGATTACCTTGGTAATGTTT 57.079 29.630 24.63 13.82 30.47 2.83
3160 5193 2.355115 GTGATCCCCGGCAGGTTT 59.645 61.111 1.11 0.00 35.12 3.27
3397 5430 3.170672 TGGGAGCACAGCACCTGT 61.171 61.111 5.49 0.00 46.51 4.00
3472 5505 0.973632 AGGTGACGTTGATGCTGGTA 59.026 50.000 0.00 0.00 0.00 3.25
3479 5512 2.631062 TGTTGTAGGAGGTGACGTTGAT 59.369 45.455 0.00 0.00 0.00 2.57
3593 5632 0.609131 CCAAAGCCCACCGTGAATCT 60.609 55.000 0.00 0.00 0.00 2.40
3619 5662 0.994995 CTCGTTGTCCTTCATCTGCG 59.005 55.000 0.00 0.00 0.00 5.18
3752 5795 1.091771 CGTCCATGCCATCGAGCTTT 61.092 55.000 0.00 0.00 0.00 3.51
3879 5922 7.453752 TCGATAGTAGCAAGTAATAAAGGGGAT 59.546 37.037 0.00 0.00 37.40 3.85
3880 5923 6.779049 TCGATAGTAGCAAGTAATAAAGGGGA 59.221 38.462 0.00 0.00 37.40 4.81
3901 6037 1.970640 TCCATCCATGAACCGATCGAT 59.029 47.619 18.66 4.66 0.00 3.59
3902 6038 1.408969 TCCATCCATGAACCGATCGA 58.591 50.000 18.66 0.00 0.00 3.59
3903 6039 2.462456 ATCCATCCATGAACCGATCG 57.538 50.000 8.51 8.51 0.00 3.69
3904 6040 3.686726 GCTAATCCATCCATGAACCGATC 59.313 47.826 0.00 0.00 0.00 3.69
3907 6043 3.131709 AGCTAATCCATCCATGAACCG 57.868 47.619 0.00 0.00 0.00 4.44
3956 6095 3.945285 TCGTTAATGAAATTGGAGAGGGC 59.055 43.478 0.00 0.00 36.99 5.19
3965 6104 8.934507 TTGTCTTTGGTTTCGTTAATGAAATT 57.065 26.923 22.33 0.00 39.80 1.82
3991 6130 6.600427 GGGAAATCCTTTTTCGGTAGTAATGA 59.400 38.462 0.00 0.00 35.95 2.57
3995 6134 4.623647 CGGGGAAATCCTTTTTCGGTAGTA 60.624 45.833 0.00 0.00 35.95 1.82
4007 6146 8.178313 CTTTATAAATAAAGCGGGGAAATCCT 57.822 34.615 9.01 0.00 41.69 3.24
4025 6626 5.004448 TGATCGGTGTTGGTTGCTTTATAA 58.996 37.500 0.00 0.00 0.00 0.98
4062 6663 4.081030 CTTGGTGTGCTGCTCGCG 62.081 66.667 0.00 0.00 43.27 5.87
4084 6685 3.327754 GTACGCGGCGGTGCTATG 61.328 66.667 27.37 0.00 0.00 2.23
4113 6830 2.416547 CGGCATCACATTTCTTCTTCGT 59.583 45.455 0.00 0.00 0.00 3.85
4122 6839 1.966493 GCGTCGTCGGCATCACATTT 61.966 55.000 3.90 0.00 37.56 2.32
4146 6867 1.305887 CCCTAGGACACCTCCGGTT 60.306 63.158 11.48 0.00 42.22 4.44
4147 6868 2.103079 AACCCTAGGACACCTCCGGT 62.103 60.000 11.48 0.00 42.22 5.28
4205 6926 0.907704 TGAAGGGTATCGGTGGTGCT 60.908 55.000 0.00 0.00 0.00 4.40
4262 6983 2.513395 TGCCGGTTCTTCCAGCAA 59.487 55.556 1.90 0.00 45.42 3.91
4266 6987 1.497309 AATCCCTGCCGGTTCTTCCA 61.497 55.000 1.90 0.00 35.57 3.53
4296 7020 1.409661 GGTTGGACAGTGGAGTTTGGT 60.410 52.381 0.00 0.00 0.00 3.67
4321 7045 1.901159 CAAATTGGATGGTTGGCTCCA 59.099 47.619 4.67 4.67 39.78 3.86
4338 7062 0.538516 ACATGTTGGTAGGCGGCAAA 60.539 50.000 13.08 0.00 0.00 3.68
4389 7113 1.337728 CGTGGTGGTGATCTTAGTGCA 60.338 52.381 0.00 0.00 0.00 4.57
4395 7119 1.296715 GCCTCGTGGTGGTGATCTT 59.703 57.895 5.26 0.00 35.27 2.40
4508 7233 1.750399 GCGATGGTGTTGGAGGCAT 60.750 57.895 0.00 0.00 0.00 4.40
4541 7266 0.107897 CTGGTATACCTGTTGCCGCA 60.108 55.000 22.41 0.00 36.82 5.69
4553 7279 1.209621 GGCAAGGGTGGTCTGGTATA 58.790 55.000 0.00 0.00 0.00 1.47
4583 7312 2.128507 TCTTTGCGGGCCCGTTTTT 61.129 52.632 42.53 0.00 42.09 1.94
4605 7334 1.153784 GTTGGTGGCGGCATTGATG 60.154 57.895 17.19 0.00 0.00 3.07
4606 7335 2.350458 GGTTGGTGGCGGCATTGAT 61.350 57.895 17.19 0.00 0.00 2.57
4607 7336 2.988684 GGTTGGTGGCGGCATTGA 60.989 61.111 17.19 0.31 0.00 2.57
4608 7337 4.067913 GGGTTGGTGGCGGCATTG 62.068 66.667 17.19 0.00 0.00 2.82
4609 7338 4.612279 TGGGTTGGTGGCGGCATT 62.612 61.111 17.19 0.00 0.00 3.56
4610 7339 4.612279 TTGGGTTGGTGGCGGCAT 62.612 61.111 17.19 0.00 0.00 4.40
4621 7350 4.699522 GAGGAGCGGCGTTGGGTT 62.700 66.667 9.37 0.00 0.00 4.11
4633 7362 3.474570 CTTCCAGGGGCGGAGGAG 61.475 72.222 0.00 0.00 36.12 3.69
4642 7371 4.113815 TCGGCATGGCTTCCAGGG 62.114 66.667 18.09 0.00 36.75 4.45
4643 7372 2.825836 GTCGGCATGGCTTCCAGG 60.826 66.667 18.09 0.14 36.75 4.45
4644 7373 1.675310 TTGTCGGCATGGCTTCCAG 60.675 57.895 18.09 0.93 36.75 3.86
4645 7374 1.971167 GTTGTCGGCATGGCTTCCA 60.971 57.895 18.09 7.91 38.19 3.53
4646 7375 1.648467 GAGTTGTCGGCATGGCTTCC 61.648 60.000 18.09 5.29 0.00 3.46
4647 7376 0.955428 TGAGTTGTCGGCATGGCTTC 60.955 55.000 18.09 10.30 0.00 3.86
4648 7377 1.073025 TGAGTTGTCGGCATGGCTT 59.927 52.632 18.09 0.00 0.00 4.35
4649 7378 1.672356 GTGAGTTGTCGGCATGGCT 60.672 57.895 18.09 0.00 0.00 4.75
4650 7379 2.690778 GGTGAGTTGTCGGCATGGC 61.691 63.158 9.69 9.69 0.00 4.40
4651 7380 2.040544 GGGTGAGTTGTCGGCATGG 61.041 63.158 0.00 0.00 0.00 3.66
4652 7381 2.040544 GGGGTGAGTTGTCGGCATG 61.041 63.158 0.00 0.00 0.00 4.06
4653 7382 2.351276 GGGGTGAGTTGTCGGCAT 59.649 61.111 0.00 0.00 0.00 4.40
4654 7383 3.164977 TGGGGTGAGTTGTCGGCA 61.165 61.111 0.00 0.00 0.00 5.69
4655 7384 2.668550 GTGGGGTGAGTTGTCGGC 60.669 66.667 0.00 0.00 0.00 5.54
4656 7385 2.032071 GGTGGGGTGAGTTGTCGG 59.968 66.667 0.00 0.00 0.00 4.79
4657 7386 2.357034 CGGTGGGGTGAGTTGTCG 60.357 66.667 0.00 0.00 0.00 4.35
4658 7387 2.668550 GCGGTGGGGTGAGTTGTC 60.669 66.667 0.00 0.00 0.00 3.18
4659 7388 4.265056 GGCGGTGGGGTGAGTTGT 62.265 66.667 0.00 0.00 0.00 3.32
4679 7408 4.181010 CATCTGGGTCTGGGCGGG 62.181 72.222 0.00 0.00 0.00 6.13
4680 7409 4.181010 CCATCTGGGTCTGGGCGG 62.181 72.222 0.00 0.00 0.00 6.13
4681 7410 4.864334 GCCATCTGGGTCTGGGCG 62.864 72.222 0.00 0.00 39.65 6.13
4687 7416 1.622811 CAGATCTAGGCCATCTGGGTC 59.377 57.143 19.35 1.77 42.49 4.46
4688 7417 1.727062 CAGATCTAGGCCATCTGGGT 58.273 55.000 19.35 0.00 42.49 4.51
4691 7420 0.324285 GCCCAGATCTAGGCCATCTG 59.676 60.000 20.41 19.92 44.81 2.90
4692 7421 2.770748 GCCCAGATCTAGGCCATCT 58.229 57.895 20.41 0.95 43.76 2.90
4698 7427 2.925262 CGCTCGGCCCAGATCTAGG 61.925 68.421 0.00 2.31 0.00 3.02
4699 7428 2.647875 CGCTCGGCCCAGATCTAG 59.352 66.667 0.00 0.00 0.00 2.43
4700 7429 2.912542 CCGCTCGGCCCAGATCTA 60.913 66.667 0.00 0.00 0.00 1.98
4802 7531 4.764771 TACCTAGGCGGCGGTGGT 62.765 66.667 21.96 21.96 34.76 4.16
4803 7532 4.217159 GTACCTAGGCGGCGGTGG 62.217 72.222 17.08 15.58 34.76 4.61
4804 7533 2.306255 AATGTACCTAGGCGGCGGTG 62.306 60.000 17.08 6.03 34.76 4.94
4805 7534 2.024590 GAATGTACCTAGGCGGCGGT 62.025 60.000 9.30 12.93 37.31 5.68
4806 7535 1.300697 GAATGTACCTAGGCGGCGG 60.301 63.158 9.30 1.63 35.61 6.13
4807 7536 1.300697 GGAATGTACCTAGGCGGCG 60.301 63.158 9.30 0.51 35.61 6.46
4808 7537 1.070957 GGGAATGTACCTAGGCGGC 59.929 63.158 9.30 0.00 35.61 6.53
4809 7538 1.056660 ATGGGAATGTACCTAGGCGG 58.943 55.000 9.30 0.00 39.35 6.13
4810 7539 1.878102 GCATGGGAATGTACCTAGGCG 60.878 57.143 9.30 0.00 38.27 5.52
4811 7540 1.878102 CGCATGGGAATGTACCTAGGC 60.878 57.143 9.30 0.00 42.92 3.93
4812 7541 1.878102 GCGCATGGGAATGTACCTAGG 60.878 57.143 14.90 7.41 0.00 3.02
4813 7542 1.512926 GCGCATGGGAATGTACCTAG 58.487 55.000 14.90 0.00 0.00 3.02
4814 7543 0.107831 GGCGCATGGGAATGTACCTA 59.892 55.000 14.90 0.00 0.00 3.08
4815 7544 1.152963 GGCGCATGGGAATGTACCT 60.153 57.895 14.90 0.00 0.00 3.08
4816 7545 2.542907 CGGCGCATGGGAATGTACC 61.543 63.158 14.90 2.86 0.00 3.34
4817 7546 3.022287 CGGCGCATGGGAATGTAC 58.978 61.111 14.90 0.00 0.00 2.90
4818 7547 2.899838 GCGGCGCATGGGAATGTA 60.900 61.111 29.21 0.00 0.00 2.29
4844 7573 4.266983 TCAGTGTCACGCTGATGC 57.733 55.556 17.36 0.00 44.56 3.91
4847 7576 1.268079 CTCTTCTCAGTGTCACGCTGA 59.732 52.381 19.92 19.92 46.76 4.26
4848 7577 1.268079 TCTCTTCTCAGTGTCACGCTG 59.732 52.381 12.49 12.49 42.60 5.18
4849 7578 1.610363 TCTCTTCTCAGTGTCACGCT 58.390 50.000 0.00 0.00 0.00 5.07
4850 7579 2.423926 TTCTCTTCTCAGTGTCACGC 57.576 50.000 0.00 0.00 0.00 5.34
4851 7580 3.312828 CCTTTCTCTTCTCAGTGTCACG 58.687 50.000 0.00 0.00 0.00 4.35
4852 7581 3.063485 GCCTTTCTCTTCTCAGTGTCAC 58.937 50.000 0.00 0.00 0.00 3.67
4853 7582 2.037772 GGCCTTTCTCTTCTCAGTGTCA 59.962 50.000 0.00 0.00 0.00 3.58
4854 7583 2.037772 TGGCCTTTCTCTTCTCAGTGTC 59.962 50.000 3.32 0.00 0.00 3.67
4855 7584 2.038295 CTGGCCTTTCTCTTCTCAGTGT 59.962 50.000 3.32 0.00 0.00 3.55
4856 7585 2.614987 CCTGGCCTTTCTCTTCTCAGTG 60.615 54.545 3.32 0.00 0.00 3.66
4857 7586 1.627834 CCTGGCCTTTCTCTTCTCAGT 59.372 52.381 3.32 0.00 0.00 3.41
4858 7587 1.065564 CCCTGGCCTTTCTCTTCTCAG 60.066 57.143 3.32 0.00 0.00 3.35
4859 7588 0.987294 CCCTGGCCTTTCTCTTCTCA 59.013 55.000 3.32 0.00 0.00 3.27
4860 7589 0.254462 CCCCTGGCCTTTCTCTTCTC 59.746 60.000 3.32 0.00 0.00 2.87
4861 7590 1.857638 GCCCCTGGCCTTTCTCTTCT 61.858 60.000 3.32 0.00 44.06 2.85
4862 7591 1.379176 GCCCCTGGCCTTTCTCTTC 60.379 63.158 3.32 0.00 44.06 2.87
4863 7592 2.766660 GCCCCTGGCCTTTCTCTT 59.233 61.111 3.32 0.00 44.06 2.85
4912 7641 3.740128 ATCGCTGTCGGTGGCATCC 62.740 63.158 0.00 0.00 36.13 3.51
4913 7642 2.202932 ATCGCTGTCGGTGGCATC 60.203 61.111 0.00 0.00 36.13 3.91
4914 7643 2.512286 CATCGCTGTCGGTGGCAT 60.512 61.111 0.00 0.00 42.79 4.40
4918 7647 1.811266 CTTCCCATCGCTGTCGGTG 60.811 63.158 0.00 0.00 45.88 4.94
4919 7648 2.579201 CTTCCCATCGCTGTCGGT 59.421 61.111 0.00 0.00 36.13 4.69
4920 7649 2.202932 CCTTCCCATCGCTGTCGG 60.203 66.667 0.00 0.00 36.13 4.79
4921 7650 1.084370 GTTCCTTCCCATCGCTGTCG 61.084 60.000 0.00 0.00 0.00 4.35
4922 7651 1.084370 CGTTCCTTCCCATCGCTGTC 61.084 60.000 0.00 0.00 0.00 3.51
4923 7652 1.079127 CGTTCCTTCCCATCGCTGT 60.079 57.895 0.00 0.00 0.00 4.40
4924 7653 0.807667 CTCGTTCCTTCCCATCGCTG 60.808 60.000 0.00 0.00 0.00 5.18
4925 7654 1.517832 CTCGTTCCTTCCCATCGCT 59.482 57.895 0.00 0.00 0.00 4.93
4926 7655 2.174319 GCTCGTTCCTTCCCATCGC 61.174 63.158 0.00 0.00 0.00 4.58
4927 7656 0.807667 CAGCTCGTTCCTTCCCATCG 60.808 60.000 0.00 0.00 0.00 3.84
4928 7657 0.462759 CCAGCTCGTTCCTTCCCATC 60.463 60.000 0.00 0.00 0.00 3.51
4929 7658 1.604378 CCAGCTCGTTCCTTCCCAT 59.396 57.895 0.00 0.00 0.00 4.00
4930 7659 2.592993 CCCAGCTCGTTCCTTCCCA 61.593 63.158 0.00 0.00 0.00 4.37
4931 7660 2.269241 CCCAGCTCGTTCCTTCCC 59.731 66.667 0.00 0.00 0.00 3.97
4932 7661 2.245438 CTCCCCAGCTCGTTCCTTCC 62.245 65.000 0.00 0.00 0.00 3.46
4933 7662 1.219393 CTCCCCAGCTCGTTCCTTC 59.781 63.158 0.00 0.00 0.00 3.46
4934 7663 2.294078 CCTCCCCAGCTCGTTCCTT 61.294 63.158 0.00 0.00 0.00 3.36
4935 7664 2.685380 CCTCCCCAGCTCGTTCCT 60.685 66.667 0.00 0.00 0.00 3.36
4936 7665 2.683933 TCCTCCCCAGCTCGTTCC 60.684 66.667 0.00 0.00 0.00 3.62
4937 7666 2.896443 CTCCTCCCCAGCTCGTTC 59.104 66.667 0.00 0.00 0.00 3.95
4938 7667 3.394836 GCTCCTCCCCAGCTCGTT 61.395 66.667 0.00 0.00 33.75 3.85
4973 7702 3.077556 CCCTCCTCCCCACTCGTG 61.078 72.222 0.00 0.00 0.00 4.35
4974 7703 4.400251 CCCCTCCTCCCCACTCGT 62.400 72.222 0.00 0.00 0.00 4.18
4975 7704 2.525284 TAACCCCTCCTCCCCACTCG 62.525 65.000 0.00 0.00 0.00 4.18
4976 7705 0.253020 TTAACCCCTCCTCCCCACTC 60.253 60.000 0.00 0.00 0.00 3.51
4977 7706 0.197661 TTTAACCCCTCCTCCCCACT 59.802 55.000 0.00 0.00 0.00 4.00
4978 7707 0.624254 CTTTAACCCCTCCTCCCCAC 59.376 60.000 0.00 0.00 0.00 4.61
4979 7708 0.499147 TCTTTAACCCCTCCTCCCCA 59.501 55.000 0.00 0.00 0.00 4.96
4980 7709 0.917533 GTCTTTAACCCCTCCTCCCC 59.082 60.000 0.00 0.00 0.00 4.81
4981 7710 1.665137 TGTCTTTAACCCCTCCTCCC 58.335 55.000 0.00 0.00 0.00 4.30
4982 7711 3.069079 GTTGTCTTTAACCCCTCCTCC 57.931 52.381 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.