Multiple sequence alignment - TraesCS6B01G095300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G095300 chr6B 100.000 4689 0 0 1 4689 71346130 71350818 0.000000e+00 8660.0
1 TraesCS6B01G095300 chr6B 98.125 960 16 2 1328 2286 71487257 71488215 0.000000e+00 1672.0
2 TraesCS6B01G095300 chr6B 90.232 604 21 6 3467 4045 71488992 71489582 0.000000e+00 754.0
3 TraesCS6B01G095300 chr6B 83.676 680 76 15 2155 2803 71488228 71488903 4.010000e-170 608.0
4 TraesCS6B01G095300 chr6B 76.773 973 185 25 1561 2503 29263947 29262986 1.510000e-139 507.0
5 TraesCS6B01G095300 chr6B 76.056 710 152 14 1571 2269 33590137 33589435 2.080000e-93 353.0
6 TraesCS6B01G095300 chr6B 73.426 937 199 32 1001 1924 36137725 36138624 5.890000e-79 305.0
7 TraesCS6B01G095300 chr6B 81.232 357 29 8 2913 3241 71348441 71348787 2.170000e-63 254.0
8 TraesCS6B01G095300 chr6B 81.232 357 29 8 2312 2658 71349042 71349370 2.170000e-63 254.0
9 TraesCS6B01G095300 chr6B 87.719 228 15 8 3027 3241 71488531 71488758 2.170000e-63 254.0
10 TraesCS6B01G095300 chr6B 99.237 131 1 0 4559 4689 71490160 71490290 2.180000e-58 237.0
11 TraesCS6B01G095300 chr6B 78.056 319 54 14 3632 3943 35014403 35014712 2.230000e-43 187.0
12 TraesCS6B01G095300 chr6B 83.186 226 17 5 4350 4560 71489892 71490111 2.230000e-43 187.0
13 TraesCS6B01G095300 chr6B 77.824 239 33 12 3752 3975 33631787 33631554 3.810000e-26 130.0
14 TraesCS6B01G095300 chr6B 88.750 80 8 1 4559 4638 71494717 71494795 3.860000e-16 97.1
15 TraesCS6B01G095300 chr6D 93.781 1399 65 4 811 2200 34577456 34578841 0.000000e+00 2082.0
16 TraesCS6B01G095300 chr6D 93.590 1170 22 12 2906 4045 34580299 34581445 0.000000e+00 1696.0
17 TraesCS6B01G095300 chr6D 91.291 666 40 7 2256 2914 34579060 34579714 0.000000e+00 893.0
18 TraesCS6B01G095300 chr6D 90.533 338 24 4 4083 4418 34581573 34581904 1.550000e-119 440.0
19 TraesCS6B01G095300 chr6D 82.732 388 38 7 2263 2648 34580257 34580617 7.570000e-83 318.0
20 TraesCS6B01G095300 chr6D 75.659 493 106 8 1561 2045 21889597 21890083 2.820000e-57 233.0
21 TraesCS6B01G095300 chr6D 87.097 217 13 4 2380 2588 34578840 34579049 1.010000e-56 231.0
22 TraesCS6B01G095300 chr6D 90.286 175 15 2 3310 3482 48458134 48457960 1.310000e-55 228.0
23 TraesCS6B01G095300 chr6D 75.091 550 104 27 1008 1544 21050467 21050996 4.720000e-55 226.0
24 TraesCS6B01G095300 chr6D 76.485 421 91 5 999 1415 20142413 20141997 6.110000e-54 222.0
25 TraesCS6B01G095300 chr6D 85.787 197 15 1 4366 4562 34581904 34582087 3.700000e-46 196.0
26 TraesCS6B01G095300 chr6D 92.308 130 10 0 4559 4688 34582112 34582241 8.010000e-43 185.0
27 TraesCS6B01G095300 chr6D 90.071 141 13 1 3482 3621 34579641 34579781 1.040000e-41 182.0
28 TraesCS6B01G095300 chr6D 80.531 226 33 8 3026 3241 20476894 20477118 3.750000e-36 163.0
29 TraesCS6B01G095300 chr6D 85.161 155 10 5 3026 3171 34578899 34579049 3.780000e-31 147.0
30 TraesCS6B01G095300 chr6D 76.071 280 61 6 1001 1277 20648760 20649036 1.760000e-29 141.0
31 TraesCS6B01G095300 chr6D 86.667 75 9 1 4559 4633 34586512 34586585 1.080000e-11 82.4
32 TraesCS6B01G095300 chr6D 95.000 40 2 0 4109 4148 34580223 34580262 3.920000e-06 63.9
33 TraesCS6B01G095300 chr6A 89.527 888 72 9 1576 2445 38865557 38866441 0.000000e+00 1105.0
34 TraesCS6B01G095300 chr6A 90.633 790 28 9 3467 4219 38868648 38869428 0.000000e+00 1007.0
35 TraesCS6B01G095300 chr6A 92.007 563 39 2 831 1387 38850216 38850778 0.000000e+00 785.0
36 TraesCS6B01G095300 chr6A 75.227 1542 288 55 1000 2503 17380878 17379393 0.000000e+00 645.0
37 TraesCS6B01G095300 chr6A 86.422 464 40 8 2451 2908 38866483 38866929 1.960000e-133 486.0
38 TraesCS6B01G095300 chr6A 83.971 418 51 13 2391 2803 38868153 38868559 2.050000e-103 387.0
39 TraesCS6B01G095300 chr6A 89.130 276 17 6 414 676 38849579 38849854 9.730000e-87 331.0
40 TraesCS6B01G095300 chr6A 93.182 220 10 3 3027 3241 38868202 38868421 7.570000e-83 318.0
41 TraesCS6B01G095300 chr6A 86.909 275 25 6 3744 4017 38867122 38867386 9.860000e-77 298.0
42 TraesCS6B01G095300 chr6A 78.487 423 77 9 1858 2272 19948613 19948197 1.000000e-66 265.0
43 TraesCS6B01G095300 chr6A 77.427 412 78 12 1008 1413 21306426 21306828 1.010000e-56 231.0
44 TraesCS6B01G095300 chr6A 77.129 411 84 7 999 1404 20204128 20203723 3.650000e-56 230.0
45 TraesCS6B01G095300 chr6A 76.577 444 86 15 1001 1435 21321051 21321485 1.310000e-55 228.0
46 TraesCS6B01G095300 chr6A 86.667 210 20 4 3038 3240 38866483 38866691 4.720000e-55 226.0
47 TraesCS6B01G095300 chr6A 85.714 147 14 5 3482 3621 38866863 38867009 1.050000e-31 148.0
48 TraesCS6B01G095300 chr6A 79.295 227 32 9 3026 3238 20501382 20501607 1.360000e-30 145.0
49 TraesCS6B01G095300 chr6A 78.818 203 33 9 1238 1435 21315893 21316090 1.370000e-25 128.0
50 TraesCS6B01G095300 chr6A 78.818 203 33 9 1238 1435 21327534 21327731 1.370000e-25 128.0
51 TraesCS6B01G095300 chr6A 87.755 98 9 3 659 754 38849863 38849959 1.380000e-20 111.0
52 TraesCS6B01G095300 chr6A 96.552 58 2 0 3254 3311 38868594 38868651 3.860000e-16 97.1
53 TraesCS6B01G095300 chr6A 79.452 146 13 9 3887 4021 19599989 19599850 2.320000e-13 87.9
54 TraesCS6B01G095300 chr6A 82.857 105 9 4 3570 3665 39002468 39002572 8.360000e-13 86.1
55 TraesCS6B01G095300 chr2B 97.349 415 11 0 1 415 238079146 238078732 0.000000e+00 706.0
56 TraesCS6B01G095300 chr2B 96.627 415 14 0 1 415 107280473 107280059 0.000000e+00 689.0
57 TraesCS6B01G095300 chr2B 79.882 338 65 3 1000 1334 771160312 771159975 1.300000e-60 244.0
58 TraesCS6B01G095300 chr2B 89.881 168 15 2 3310 3476 109974475 109974309 1.020000e-51 215.0
59 TraesCS6B01G095300 chr3B 97.094 413 12 0 1 413 406394859 406394447 0.000000e+00 697.0
60 TraesCS6B01G095300 chr3B 97.094 413 12 0 1 413 406403569 406403157 0.000000e+00 697.0
61 TraesCS6B01G095300 chr3B 96.867 415 13 0 1 415 417696067 417696481 0.000000e+00 695.0
62 TraesCS6B01G095300 chr3B 96.860 414 13 0 1 414 526412654 526413067 0.000000e+00 693.0
63 TraesCS6B01G095300 chr1B 97.094 413 12 0 1 413 635751759 635751347 0.000000e+00 697.0
64 TraesCS6B01G095300 chr1B 97.094 413 11 1 1 413 434458818 434459229 0.000000e+00 695.0
65 TraesCS6B01G095300 chr1B 80.615 423 74 5 1016 1437 471805976 471805561 2.110000e-83 320.0
66 TraesCS6B01G095300 chr5B 96.860 414 13 0 1 414 179442761 179443174 0.000000e+00 693.0
67 TraesCS6B01G095300 chr2A 80.178 338 64 3 1000 1334 758526617 758526280 2.800000e-62 250.0
68 TraesCS6B01G095300 chr3D 89.444 180 17 2 3293 3470 87925982 87926161 4.720000e-55 226.0
69 TraesCS6B01G095300 chr3D 90.533 169 14 2 3310 3477 449740443 449740276 6.110000e-54 222.0
70 TraesCS6B01G095300 chr1A 90.588 170 15 1 3309 3477 295588138 295587969 1.700000e-54 224.0
71 TraesCS6B01G095300 chr7D 91.411 163 13 1 3310 3471 397554916 397555078 6.110000e-54 222.0
72 TraesCS6B01G095300 chr7B 91.411 163 13 1 3310 3471 401532561 401532723 6.110000e-54 222.0
73 TraesCS6B01G095300 chr7A 90.909 165 14 1 3310 3473 494786990 494786826 2.200000e-53 220.0
74 TraesCS6B01G095300 chrUn 75.836 269 59 6 1001 1266 76454383 76454118 1.060000e-26 132.0
75 TraesCS6B01G095300 chr5A 100.000 28 0 0 1478 1505 454436414 454436387 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G095300 chr6B 71346130 71350818 4688 False 3056.000000 8660 87.488000 1 4689 3 chr6B.!!$F4 4688
1 TraesCS6B01G095300 chr6B 71487257 71490290 3033 False 618.666667 1672 90.362500 1328 4689 6 chr6B.!!$F5 3361
2 TraesCS6B01G095300 chr6B 29262986 29263947 961 True 507.000000 507 76.773000 1561 2503 1 chr6B.!!$R1 942
3 TraesCS6B01G095300 chr6B 33589435 33590137 702 True 353.000000 353 76.056000 1571 2269 1 chr6B.!!$R2 698
4 TraesCS6B01G095300 chr6B 36137725 36138624 899 False 305.000000 305 73.426000 1001 1924 1 chr6B.!!$F2 923
5 TraesCS6B01G095300 chr6D 34577456 34582241 4785 False 584.900000 2082 89.759182 811 4688 11 chr6D.!!$F6 3877
6 TraesCS6B01G095300 chr6D 21050467 21050996 529 False 226.000000 226 75.091000 1008 1544 1 chr6D.!!$F3 536
7 TraesCS6B01G095300 chr6A 17379393 17380878 1485 True 645.000000 645 75.227000 1000 2503 1 chr6A.!!$R1 1503
8 TraesCS6B01G095300 chr6A 38865557 38869428 3871 False 452.455556 1105 88.841889 1576 4219 9 chr6A.!!$F8 2643
9 TraesCS6B01G095300 chr6A 38849579 38850778 1199 False 409.000000 785 89.630667 414 1387 3 chr6A.!!$F7 973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 357 0.034896 TTCTGCTCCTCGTTGGGTTC 59.965 55.0 0.00 0.0 36.20 3.62 F
409 410 0.104882 TCCCCTACACTTGTGGGTCA 60.105 55.0 10.56 0.0 44.20 4.02 F
419 420 0.602638 TTGTGGGTCATCAGTGCGTC 60.603 55.0 0.00 0.0 0.00 5.19 F
481 483 0.612744 TGATGTTGGTCGAGATGCCA 59.387 50.0 0.00 0.0 0.00 4.92 F
1277 1528 0.617820 TTCTCCTTCCCCTTCCTCCG 60.618 60.0 0.00 0.0 0.00 4.63 F
2617 4991 0.029300 CCATTCCGTTTATGGCGCTG 59.971 55.0 7.64 0.0 36.43 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1180 1431 0.250513 GGGTGGAAGACTCGCTGATT 59.749 55.000 0.00 0.00 0.00 2.57 R
2373 2972 2.087501 TCTTACGATTTCAAGGCGCA 57.912 45.000 10.83 0.00 0.00 6.09 R
2376 2975 4.148891 CGTGTTTCTTACGATTTCAAGGC 58.851 43.478 0.00 0.00 43.82 4.35 R
2544 4918 5.097234 ACTTGCCTCCCTGCTTATATCTAT 58.903 41.667 0.00 0.00 0.00 1.98 R
2952 5925 0.949397 ACTCATGCTGTGCACAGTTG 59.051 50.000 39.30 34.29 43.04 3.16 R
4229 7494 0.180878 TGATGATGAATGGCCGCTCA 59.819 50.000 8.88 8.88 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.729868 GGGTTAATCATAAGTGGGATGCT 58.270 43.478 0.00 0.00 0.00 3.79
23 24 5.140454 GGGTTAATCATAAGTGGGATGCTT 58.860 41.667 0.00 0.00 0.00 3.91
24 25 5.010012 GGGTTAATCATAAGTGGGATGCTTG 59.990 44.000 0.00 0.00 0.00 4.01
25 26 5.594317 GGTTAATCATAAGTGGGATGCTTGT 59.406 40.000 0.00 0.00 0.00 3.16
26 27 6.238759 GGTTAATCATAAGTGGGATGCTTGTC 60.239 42.308 0.00 0.00 0.00 3.18
27 28 3.281727 TCATAAGTGGGATGCTTGTCC 57.718 47.619 0.00 0.00 37.56 4.02
28 29 2.575735 TCATAAGTGGGATGCTTGTCCA 59.424 45.455 5.86 0.00 40.17 4.02
29 30 3.010027 TCATAAGTGGGATGCTTGTCCAA 59.990 43.478 5.86 0.00 40.17 3.53
30 31 1.915141 AAGTGGGATGCTTGTCCAAG 58.085 50.000 2.63 2.63 40.17 3.61
31 32 0.773644 AGTGGGATGCTTGTCCAAGT 59.226 50.000 8.69 0.00 40.17 3.16
32 33 1.145738 AGTGGGATGCTTGTCCAAGTT 59.854 47.619 8.69 0.00 40.17 2.66
33 34 2.375174 AGTGGGATGCTTGTCCAAGTTA 59.625 45.455 8.69 0.00 40.17 2.24
34 35 2.749621 GTGGGATGCTTGTCCAAGTTAG 59.250 50.000 8.69 0.00 40.17 2.34
35 36 2.290896 TGGGATGCTTGTCCAAGTTAGG 60.291 50.000 8.69 0.00 40.17 2.69
36 37 2.369394 GGATGCTTGTCCAAGTTAGGG 58.631 52.381 8.69 0.00 40.45 3.53
37 38 1.745653 GATGCTTGTCCAAGTTAGGGC 59.254 52.381 8.69 0.00 40.45 5.19
38 39 0.476338 TGCTTGTCCAAGTTAGGGCA 59.524 50.000 8.69 0.00 42.62 5.36
39 40 1.168714 GCTTGTCCAAGTTAGGGCAG 58.831 55.000 8.69 0.00 45.41 4.85
40 41 1.545651 GCTTGTCCAAGTTAGGGCAGT 60.546 52.381 8.69 0.00 45.41 4.40
41 42 2.290071 GCTTGTCCAAGTTAGGGCAGTA 60.290 50.000 8.69 0.00 45.41 2.74
42 43 3.335579 CTTGTCCAAGTTAGGGCAGTAC 58.664 50.000 0.00 0.00 45.41 2.73
43 44 1.626825 TGTCCAAGTTAGGGCAGTACC 59.373 52.381 0.00 0.00 38.62 3.34
44 45 6.909448 CTTGTCCAAGTTAGGGCAGTACCC 62.909 54.167 0.00 0.00 45.41 3.69
54 55 2.747686 CAGTACCCAAGTGCCGGT 59.252 61.111 1.90 0.00 36.08 5.28
55 56 1.375523 CAGTACCCAAGTGCCGGTC 60.376 63.158 1.90 0.00 33.36 4.79
56 57 2.046604 GTACCCAAGTGCCGGTCC 60.047 66.667 1.90 0.00 33.36 4.46
57 58 2.527123 TACCCAAGTGCCGGTCCA 60.527 61.111 1.90 0.00 33.36 4.02
58 59 2.886134 TACCCAAGTGCCGGTCCAC 61.886 63.158 1.90 3.26 33.36 4.02
61 62 4.263572 CAAGTGCCGGTCCACCCA 62.264 66.667 1.90 0.00 36.38 4.51
62 63 4.265056 AAGTGCCGGTCCACCCAC 62.265 66.667 1.90 0.68 36.38 4.61
64 65 4.344865 GTGCCGGTCCACCCACAT 62.345 66.667 1.90 0.00 31.25 3.21
65 66 2.608059 TGCCGGTCCACCCACATA 60.608 61.111 1.90 0.00 0.00 2.29
66 67 1.998438 TGCCGGTCCACCCACATAT 60.998 57.895 1.90 0.00 0.00 1.78
67 68 1.227853 GCCGGTCCACCCACATATC 60.228 63.158 1.90 0.00 0.00 1.63
68 69 1.978455 GCCGGTCCACCCACATATCA 61.978 60.000 1.90 0.00 0.00 2.15
69 70 0.544223 CCGGTCCACCCACATATCAA 59.456 55.000 0.00 0.00 0.00 2.57
70 71 1.065053 CCGGTCCACCCACATATCAAA 60.065 52.381 0.00 0.00 0.00 2.69
71 72 2.422803 CCGGTCCACCCACATATCAAAT 60.423 50.000 0.00 0.00 0.00 2.32
72 73 3.287222 CGGTCCACCCACATATCAAATT 58.713 45.455 0.00 0.00 0.00 1.82
73 74 4.456535 CGGTCCACCCACATATCAAATTA 58.543 43.478 0.00 0.00 0.00 1.40
74 75 5.070001 CGGTCCACCCACATATCAAATTAT 58.930 41.667 0.00 0.00 0.00 1.28
75 76 5.181245 CGGTCCACCCACATATCAAATTATC 59.819 44.000 0.00 0.00 0.00 1.75
76 77 6.068010 GGTCCACCCACATATCAAATTATCA 58.932 40.000 0.00 0.00 0.00 2.15
77 78 6.549364 GGTCCACCCACATATCAAATTATCAA 59.451 38.462 0.00 0.00 0.00 2.57
78 79 7.069331 GGTCCACCCACATATCAAATTATCAAA 59.931 37.037 0.00 0.00 0.00 2.69
79 80 8.137437 GTCCACCCACATATCAAATTATCAAAG 58.863 37.037 0.00 0.00 0.00 2.77
80 81 7.838696 TCCACCCACATATCAAATTATCAAAGT 59.161 33.333 0.00 0.00 0.00 2.66
81 82 9.130661 CCACCCACATATCAAATTATCAAAGTA 57.869 33.333 0.00 0.00 0.00 2.24
82 83 9.950680 CACCCACATATCAAATTATCAAAGTAC 57.049 33.333 0.00 0.00 0.00 2.73
83 84 9.131791 ACCCACATATCAAATTATCAAAGTACC 57.868 33.333 0.00 0.00 0.00 3.34
84 85 8.289618 CCCACATATCAAATTATCAAAGTACCG 58.710 37.037 0.00 0.00 0.00 4.02
85 86 9.051679 CCACATATCAAATTATCAAAGTACCGA 57.948 33.333 0.00 0.00 0.00 4.69
88 89 9.580916 CATATCAAATTATCAAAGTACCGAACG 57.419 33.333 0.00 0.00 0.00 3.95
89 90 5.860641 TCAAATTATCAAAGTACCGAACGC 58.139 37.500 0.00 0.00 0.00 4.84
90 91 4.509915 AATTATCAAAGTACCGAACGCG 57.490 40.909 3.53 3.53 37.24 6.01
91 92 2.917701 TATCAAAGTACCGAACGCGA 57.082 45.000 15.93 0.00 40.82 5.87
92 93 2.068837 ATCAAAGTACCGAACGCGAA 57.931 45.000 15.93 0.00 40.82 4.70
93 94 2.068837 TCAAAGTACCGAACGCGAAT 57.931 45.000 15.93 0.00 40.82 3.34
94 95 1.987770 TCAAAGTACCGAACGCGAATC 59.012 47.619 15.93 10.08 40.82 2.52
95 96 1.990563 CAAAGTACCGAACGCGAATCT 59.009 47.619 15.93 0.00 40.82 2.40
96 97 2.358939 AAGTACCGAACGCGAATCTT 57.641 45.000 15.93 0.00 40.82 2.40
97 98 3.492421 AAGTACCGAACGCGAATCTTA 57.508 42.857 15.93 2.17 40.82 2.10
98 99 3.705043 AGTACCGAACGCGAATCTTAT 57.295 42.857 15.93 1.58 40.82 1.73
99 100 3.369385 AGTACCGAACGCGAATCTTATG 58.631 45.455 15.93 2.41 40.82 1.90
100 101 2.572191 ACCGAACGCGAATCTTATGA 57.428 45.000 15.93 0.00 40.82 2.15
101 102 2.883574 ACCGAACGCGAATCTTATGAA 58.116 42.857 15.93 0.00 40.82 2.57
102 103 3.454375 ACCGAACGCGAATCTTATGAAT 58.546 40.909 15.93 0.00 40.82 2.57
103 104 3.245284 ACCGAACGCGAATCTTATGAATG 59.755 43.478 15.93 0.00 40.82 2.67
104 105 3.245284 CCGAACGCGAATCTTATGAATGT 59.755 43.478 15.93 0.00 40.82 2.71
105 106 4.196349 CGAACGCGAATCTTATGAATGTG 58.804 43.478 15.93 0.00 40.82 3.21
106 107 4.026886 CGAACGCGAATCTTATGAATGTGA 60.027 41.667 15.93 0.00 40.82 3.58
107 108 5.332581 CGAACGCGAATCTTATGAATGTGAT 60.333 40.000 15.93 0.00 40.82 3.06
108 109 5.334435 ACGCGAATCTTATGAATGTGATG 57.666 39.130 15.93 0.00 0.00 3.07
109 110 5.049828 ACGCGAATCTTATGAATGTGATGA 58.950 37.500 15.93 0.00 0.00 2.92
110 111 5.523552 ACGCGAATCTTATGAATGTGATGAA 59.476 36.000 15.93 0.00 0.00 2.57
111 112 6.037062 ACGCGAATCTTATGAATGTGATGAAA 59.963 34.615 15.93 0.00 0.00 2.69
112 113 6.906678 CGCGAATCTTATGAATGTGATGAAAA 59.093 34.615 0.00 0.00 0.00 2.29
113 114 7.097289 CGCGAATCTTATGAATGTGATGAAAAC 60.097 37.037 0.00 0.00 0.00 2.43
114 115 7.912250 GCGAATCTTATGAATGTGATGAAAACT 59.088 33.333 0.00 0.00 0.00 2.66
118 119 9.624373 ATCTTATGAATGTGATGAAAACTAGCT 57.376 29.630 0.00 0.00 0.00 3.32
119 120 9.453572 TCTTATGAATGTGATGAAAACTAGCTT 57.546 29.630 0.00 0.00 0.00 3.74
120 121 9.499585 CTTATGAATGTGATGAAAACTAGCTTG 57.500 33.333 0.00 0.00 0.00 4.01
121 122 7.692460 ATGAATGTGATGAAAACTAGCTTGA 57.308 32.000 1.04 0.00 0.00 3.02
122 123 6.902341 TGAATGTGATGAAAACTAGCTTGAC 58.098 36.000 1.04 0.00 0.00 3.18
123 124 4.990543 TGTGATGAAAACTAGCTTGACG 57.009 40.909 1.04 0.00 0.00 4.35
124 125 4.627058 TGTGATGAAAACTAGCTTGACGA 58.373 39.130 1.04 0.00 0.00 4.20
125 126 5.237815 TGTGATGAAAACTAGCTTGACGAT 58.762 37.500 1.04 0.00 0.00 3.73
126 127 6.394809 TGTGATGAAAACTAGCTTGACGATA 58.605 36.000 1.04 0.00 0.00 2.92
127 128 6.871492 TGTGATGAAAACTAGCTTGACGATAA 59.129 34.615 1.04 0.00 0.00 1.75
128 129 7.549134 TGTGATGAAAACTAGCTTGACGATAAT 59.451 33.333 1.04 0.00 0.00 1.28
129 130 8.391106 GTGATGAAAACTAGCTTGACGATAATT 58.609 33.333 1.04 0.00 0.00 1.40
130 131 8.604035 TGATGAAAACTAGCTTGACGATAATTC 58.396 33.333 1.04 0.00 0.00 2.17
131 132 7.899178 TGAAAACTAGCTTGACGATAATTCA 57.101 32.000 1.04 0.00 0.00 2.57
132 133 7.739295 TGAAAACTAGCTTGACGATAATTCAC 58.261 34.615 1.04 0.00 0.00 3.18
133 134 7.386573 TGAAAACTAGCTTGACGATAATTCACA 59.613 33.333 1.04 0.00 0.00 3.58
134 135 7.667043 AAACTAGCTTGACGATAATTCACAA 57.333 32.000 1.04 0.00 0.00 3.33
135 136 7.849804 AACTAGCTTGACGATAATTCACAAT 57.150 32.000 1.04 0.00 0.00 2.71
136 137 7.239166 ACTAGCTTGACGATAATTCACAATG 57.761 36.000 1.04 0.00 0.00 2.82
137 138 6.818644 ACTAGCTTGACGATAATTCACAATGT 59.181 34.615 1.04 0.00 0.00 2.71
138 139 5.872635 AGCTTGACGATAATTCACAATGTG 58.127 37.500 7.12 7.12 34.45 3.21
139 140 5.412594 AGCTTGACGATAATTCACAATGTGT 59.587 36.000 13.55 0.00 34.79 3.72
140 141 5.734498 GCTTGACGATAATTCACAATGTGTC 59.266 40.000 13.55 2.18 34.79 3.67
141 142 5.794687 TGACGATAATTCACAATGTGTCC 57.205 39.130 13.55 0.00 34.79 4.02
142 143 5.487433 TGACGATAATTCACAATGTGTCCT 58.513 37.500 13.55 1.60 34.79 3.85
143 144 5.580691 TGACGATAATTCACAATGTGTCCTC 59.419 40.000 13.55 3.66 34.79 3.71
144 145 5.487433 ACGATAATTCACAATGTGTCCTCA 58.513 37.500 13.55 0.00 34.79 3.86
145 146 5.582269 ACGATAATTCACAATGTGTCCTCAG 59.418 40.000 13.55 4.00 34.79 3.35
146 147 5.007039 CGATAATTCACAATGTGTCCTCAGG 59.993 44.000 13.55 0.00 34.79 3.86
147 148 4.371624 AATTCACAATGTGTCCTCAGGA 57.628 40.909 13.55 0.00 34.79 3.86
148 149 3.407424 TTCACAATGTGTCCTCAGGAG 57.593 47.619 13.55 0.00 34.79 3.69
149 150 1.002430 TCACAATGTGTCCTCAGGAGC 59.998 52.381 13.55 0.00 34.79 4.70
150 151 1.002888 CACAATGTGTCCTCAGGAGCT 59.997 52.381 5.00 0.00 29.39 4.09
151 152 1.277557 ACAATGTGTCCTCAGGAGCTC 59.722 52.381 4.71 4.71 29.39 4.09
152 153 0.908198 AATGTGTCCTCAGGAGCTCC 59.092 55.000 26.22 26.22 29.39 4.70
154 155 0.178921 TGTGTCCTCAGGAGCTCCTT 60.179 55.000 33.33 15.54 46.09 3.36
155 156 1.077169 TGTGTCCTCAGGAGCTCCTTA 59.923 52.381 33.33 24.20 46.09 2.69
156 157 2.292521 TGTGTCCTCAGGAGCTCCTTAT 60.293 50.000 33.33 10.26 46.09 1.73
157 158 2.769095 GTGTCCTCAGGAGCTCCTTATT 59.231 50.000 33.33 9.83 46.09 1.40
158 159 3.034635 TGTCCTCAGGAGCTCCTTATTC 58.965 50.000 33.33 20.56 46.09 1.75
159 160 3.034635 GTCCTCAGGAGCTCCTTATTCA 58.965 50.000 33.33 13.00 46.09 2.57
160 161 3.645687 GTCCTCAGGAGCTCCTTATTCAT 59.354 47.826 33.33 7.68 46.09 2.57
161 162 3.900601 TCCTCAGGAGCTCCTTATTCATC 59.099 47.826 33.33 2.27 46.09 2.92
162 163 3.645212 CCTCAGGAGCTCCTTATTCATCA 59.355 47.826 33.33 8.19 46.09 3.07
163 164 4.286549 CCTCAGGAGCTCCTTATTCATCAT 59.713 45.833 33.33 5.13 46.09 2.45
164 165 5.221884 CCTCAGGAGCTCCTTATTCATCATT 60.222 44.000 33.33 4.53 46.09 2.57
165 166 6.013898 CCTCAGGAGCTCCTTATTCATCATTA 60.014 42.308 33.33 5.67 46.09 1.90
166 167 7.002250 TCAGGAGCTCCTTATTCATCATTAG 57.998 40.000 33.33 16.31 46.09 1.73
167 168 6.784473 TCAGGAGCTCCTTATTCATCATTAGA 59.216 38.462 33.33 18.37 46.09 2.10
168 169 7.290948 TCAGGAGCTCCTTATTCATCATTAGAA 59.709 37.037 33.33 4.55 46.09 2.10
169 170 8.102047 CAGGAGCTCCTTATTCATCATTAGAAT 58.898 37.037 33.33 2.22 46.09 2.40
170 171 8.667737 AGGAGCTCCTTATTCATCATTAGAATT 58.332 33.333 30.40 0.13 46.09 2.17
171 172 9.294614 GGAGCTCCTTATTCATCATTAGAATTT 57.705 33.333 26.25 0.00 37.02 1.82
173 174 9.638176 AGCTCCTTATTCATCATTAGAATTTGT 57.362 29.630 0.00 0.00 37.02 2.83
174 175 9.890352 GCTCCTTATTCATCATTAGAATTTGTC 57.110 33.333 0.00 0.00 37.02 3.18
176 177 9.919416 TCCTTATTCATCATTAGAATTTGTCCA 57.081 29.630 0.00 0.00 37.02 4.02
181 182 8.868522 TTCATCATTAGAATTTGTCCAGACTT 57.131 30.769 0.00 0.00 0.00 3.01
182 183 9.958180 TTCATCATTAGAATTTGTCCAGACTTA 57.042 29.630 0.00 0.00 0.00 2.24
185 186 8.964476 TCATTAGAATTTGTCCAGACTTATCC 57.036 34.615 0.00 0.00 0.00 2.59
186 187 8.772250 TCATTAGAATTTGTCCAGACTTATCCT 58.228 33.333 0.00 0.00 0.00 3.24
187 188 9.401058 CATTAGAATTTGTCCAGACTTATCCTT 57.599 33.333 0.00 0.00 0.00 3.36
188 189 9.981460 ATTAGAATTTGTCCAGACTTATCCTTT 57.019 29.630 0.00 0.00 0.00 3.11
189 190 7.693969 AGAATTTGTCCAGACTTATCCTTTG 57.306 36.000 0.00 0.00 0.00 2.77
190 191 5.904362 ATTTGTCCAGACTTATCCTTTGC 57.096 39.130 0.00 0.00 0.00 3.68
191 192 4.640771 TTGTCCAGACTTATCCTTTGCT 57.359 40.909 0.00 0.00 0.00 3.91
192 193 5.755409 TTGTCCAGACTTATCCTTTGCTA 57.245 39.130 0.00 0.00 0.00 3.49
193 194 5.086104 TGTCCAGACTTATCCTTTGCTAC 57.914 43.478 0.00 0.00 0.00 3.58
194 195 4.530553 TGTCCAGACTTATCCTTTGCTACA 59.469 41.667 0.00 0.00 0.00 2.74
195 196 5.189736 TGTCCAGACTTATCCTTTGCTACAT 59.810 40.000 0.00 0.00 0.00 2.29
196 197 6.382859 TGTCCAGACTTATCCTTTGCTACATA 59.617 38.462 0.00 0.00 0.00 2.29
197 198 7.093068 TGTCCAGACTTATCCTTTGCTACATAA 60.093 37.037 0.00 0.00 0.00 1.90
198 199 7.769044 GTCCAGACTTATCCTTTGCTACATAAA 59.231 37.037 0.00 0.00 0.00 1.40
199 200 7.987458 TCCAGACTTATCCTTTGCTACATAAAG 59.013 37.037 0.00 0.00 35.45 1.85
207 208 4.936891 CTTTGCTACATAAAGGATTGGGC 58.063 43.478 0.00 0.00 32.78 5.36
208 209 2.944129 TGCTACATAAAGGATTGGGCC 58.056 47.619 0.00 0.00 0.00 5.80
209 210 2.243478 TGCTACATAAAGGATTGGGCCA 59.757 45.455 0.00 0.00 0.00 5.36
210 211 2.623416 GCTACATAAAGGATTGGGCCAC 59.377 50.000 5.23 0.00 0.00 5.01
211 212 2.159179 ACATAAAGGATTGGGCCACC 57.841 50.000 5.23 5.11 37.24 4.61
212 213 1.645919 ACATAAAGGATTGGGCCACCT 59.354 47.619 5.23 8.05 37.76 4.00
213 214 2.044353 ACATAAAGGATTGGGCCACCTT 59.956 45.455 19.88 19.88 44.53 3.50
214 215 2.230130 TAAAGGATTGGGCCACCTTG 57.770 50.000 24.61 0.00 42.25 3.61
215 216 1.194121 AAAGGATTGGGCCACCTTGC 61.194 55.000 24.61 10.77 42.25 4.01
216 217 2.037847 GGATTGGGCCACCTTGCT 59.962 61.111 5.23 0.00 37.76 3.91
217 218 2.353610 GGATTGGGCCACCTTGCTG 61.354 63.158 5.23 0.00 37.76 4.41
218 219 2.999063 ATTGGGCCACCTTGCTGC 60.999 61.111 5.23 0.00 37.76 5.25
219 220 3.831727 ATTGGGCCACCTTGCTGCA 62.832 57.895 5.23 0.00 37.76 4.41
221 222 4.982701 GGGCCACCTTGCTGCACT 62.983 66.667 4.39 0.00 0.00 4.40
222 223 2.914097 GGCCACCTTGCTGCACTT 60.914 61.111 0.00 0.00 0.00 3.16
223 224 2.501602 GGCCACCTTGCTGCACTTT 61.502 57.895 0.00 0.00 0.00 2.66
224 225 1.178534 GGCCACCTTGCTGCACTTTA 61.179 55.000 0.00 0.00 0.00 1.85
225 226 0.890683 GCCACCTTGCTGCACTTTAT 59.109 50.000 0.00 0.00 0.00 1.40
226 227 1.273327 GCCACCTTGCTGCACTTTATT 59.727 47.619 0.00 0.00 0.00 1.40
227 228 2.289010 GCCACCTTGCTGCACTTTATTT 60.289 45.455 0.00 0.00 0.00 1.40
228 229 3.056891 GCCACCTTGCTGCACTTTATTTA 60.057 43.478 0.00 0.00 0.00 1.40
229 230 4.485163 CCACCTTGCTGCACTTTATTTAC 58.515 43.478 0.00 0.00 0.00 2.01
230 231 4.218417 CCACCTTGCTGCACTTTATTTACT 59.782 41.667 0.00 0.00 0.00 2.24
231 232 5.278957 CCACCTTGCTGCACTTTATTTACTT 60.279 40.000 0.00 0.00 0.00 2.24
232 233 6.215845 CACCTTGCTGCACTTTATTTACTTT 58.784 36.000 0.00 0.00 0.00 2.66
233 234 7.367285 CACCTTGCTGCACTTTATTTACTTTA 58.633 34.615 0.00 0.00 0.00 1.85
234 235 8.028938 CACCTTGCTGCACTTTATTTACTTTAT 58.971 33.333 0.00 0.00 0.00 1.40
235 236 8.585018 ACCTTGCTGCACTTTATTTACTTTATT 58.415 29.630 0.00 0.00 0.00 1.40
236 237 9.423061 CCTTGCTGCACTTTATTTACTTTATTT 57.577 29.630 0.00 0.00 0.00 1.40
297 298 9.765795 ACTATCTATTACCTACAATTTCAGTGC 57.234 33.333 0.00 0.00 0.00 4.40
298 299 9.988815 CTATCTATTACCTACAATTTCAGTGCT 57.011 33.333 0.00 0.00 0.00 4.40
300 301 8.492673 TCTATTACCTACAATTTCAGTGCTTG 57.507 34.615 0.00 0.00 0.00 4.01
301 302 3.923017 ACCTACAATTTCAGTGCTTGC 57.077 42.857 0.00 0.00 0.00 4.01
302 303 3.221771 ACCTACAATTTCAGTGCTTGCA 58.778 40.909 0.00 0.00 0.00 4.08
303 304 3.254166 ACCTACAATTTCAGTGCTTGCAG 59.746 43.478 0.00 0.00 0.00 4.41
304 305 3.503363 CCTACAATTTCAGTGCTTGCAGA 59.497 43.478 0.00 0.00 0.00 4.26
305 306 3.637998 ACAATTTCAGTGCTTGCAGAG 57.362 42.857 0.00 0.00 0.00 3.35
306 307 3.216800 ACAATTTCAGTGCTTGCAGAGA 58.783 40.909 0.00 0.00 0.00 3.10
307 308 3.633525 ACAATTTCAGTGCTTGCAGAGAA 59.366 39.130 0.00 0.75 0.00 2.87
308 309 4.098349 ACAATTTCAGTGCTTGCAGAGAAA 59.902 37.500 18.14 18.14 0.00 2.52
309 310 4.924305 ATTTCAGTGCTTGCAGAGAAAA 57.076 36.364 19.09 9.32 0.00 2.29
310 311 3.698029 TTCAGTGCTTGCAGAGAAAAC 57.302 42.857 0.00 0.00 0.00 2.43
311 312 1.949525 TCAGTGCTTGCAGAGAAAACC 59.050 47.619 0.00 0.00 0.00 3.27
312 313 1.952296 CAGTGCTTGCAGAGAAAACCT 59.048 47.619 0.00 0.00 0.00 3.50
313 314 2.360165 CAGTGCTTGCAGAGAAAACCTT 59.640 45.455 0.00 0.00 0.00 3.50
314 315 3.565482 CAGTGCTTGCAGAGAAAACCTTA 59.435 43.478 0.00 0.00 0.00 2.69
315 316 3.565902 AGTGCTTGCAGAGAAAACCTTAC 59.434 43.478 0.00 0.00 0.00 2.34
316 317 3.565902 GTGCTTGCAGAGAAAACCTTACT 59.434 43.478 0.00 0.00 0.00 2.24
317 318 3.565482 TGCTTGCAGAGAAAACCTTACTG 59.435 43.478 0.00 0.00 0.00 2.74
318 319 3.815401 GCTTGCAGAGAAAACCTTACTGA 59.185 43.478 0.00 0.00 0.00 3.41
319 320 4.275936 GCTTGCAGAGAAAACCTTACTGAA 59.724 41.667 0.00 0.00 0.00 3.02
320 321 5.221048 GCTTGCAGAGAAAACCTTACTGAAA 60.221 40.000 0.00 0.00 0.00 2.69
321 322 6.680378 GCTTGCAGAGAAAACCTTACTGAAAA 60.680 38.462 0.00 0.00 0.00 2.29
322 323 6.131544 TGCAGAGAAAACCTTACTGAAAAC 57.868 37.500 0.00 0.00 0.00 2.43
323 324 5.067283 TGCAGAGAAAACCTTACTGAAAACC 59.933 40.000 0.00 0.00 0.00 3.27
324 325 5.067283 GCAGAGAAAACCTTACTGAAAACCA 59.933 40.000 0.00 0.00 0.00 3.67
325 326 6.495706 CAGAGAAAACCTTACTGAAAACCAC 58.504 40.000 0.00 0.00 0.00 4.16
326 327 6.318900 CAGAGAAAACCTTACTGAAAACCACT 59.681 38.462 0.00 0.00 0.00 4.00
327 328 6.890268 AGAGAAAACCTTACTGAAAACCACTT 59.110 34.615 0.00 0.00 0.00 3.16
328 329 8.050930 AGAGAAAACCTTACTGAAAACCACTTA 58.949 33.333 0.00 0.00 0.00 2.24
329 330 8.762481 AGAAAACCTTACTGAAAACCACTTAT 57.238 30.769 0.00 0.00 0.00 1.73
330 331 8.847196 AGAAAACCTTACTGAAAACCACTTATC 58.153 33.333 0.00 0.00 0.00 1.75
331 332 8.528044 AAAACCTTACTGAAAACCACTTATCA 57.472 30.769 0.00 0.00 0.00 2.15
332 333 8.706322 AAACCTTACTGAAAACCACTTATCAT 57.294 30.769 0.00 0.00 0.00 2.45
333 334 8.706322 AACCTTACTGAAAACCACTTATCATT 57.294 30.769 0.00 0.00 0.00 2.57
334 335 8.706322 ACCTTACTGAAAACCACTTATCATTT 57.294 30.769 0.00 0.00 0.00 2.32
335 336 8.793592 ACCTTACTGAAAACCACTTATCATTTC 58.206 33.333 0.00 0.00 0.00 2.17
336 337 8.244113 CCTTACTGAAAACCACTTATCATTTCC 58.756 37.037 0.00 0.00 30.80 3.13
337 338 8.934023 TTACTGAAAACCACTTATCATTTCCT 57.066 30.769 0.00 0.00 30.80 3.36
338 339 7.839680 ACTGAAAACCACTTATCATTTCCTT 57.160 32.000 0.00 0.00 30.80 3.36
339 340 7.886338 ACTGAAAACCACTTATCATTTCCTTC 58.114 34.615 0.00 0.00 30.80 3.46
340 341 7.725844 ACTGAAAACCACTTATCATTTCCTTCT 59.274 33.333 0.00 0.00 30.80 2.85
341 342 7.885297 TGAAAACCACTTATCATTTCCTTCTG 58.115 34.615 0.00 0.00 30.80 3.02
342 343 5.904362 AACCACTTATCATTTCCTTCTGC 57.096 39.130 0.00 0.00 0.00 4.26
343 344 5.184892 ACCACTTATCATTTCCTTCTGCT 57.815 39.130 0.00 0.00 0.00 4.24
344 345 5.189180 ACCACTTATCATTTCCTTCTGCTC 58.811 41.667 0.00 0.00 0.00 4.26
345 346 4.578105 CCACTTATCATTTCCTTCTGCTCC 59.422 45.833 0.00 0.00 0.00 4.70
346 347 5.435291 CACTTATCATTTCCTTCTGCTCCT 58.565 41.667 0.00 0.00 0.00 3.69
347 348 5.526846 CACTTATCATTTCCTTCTGCTCCTC 59.473 44.000 0.00 0.00 0.00 3.71
348 349 2.680312 TCATTTCCTTCTGCTCCTCG 57.320 50.000 0.00 0.00 0.00 4.63
349 350 1.902508 TCATTTCCTTCTGCTCCTCGT 59.097 47.619 0.00 0.00 0.00 4.18
350 351 2.303022 TCATTTCCTTCTGCTCCTCGTT 59.697 45.455 0.00 0.00 0.00 3.85
351 352 2.169832 TTTCCTTCTGCTCCTCGTTG 57.830 50.000 0.00 0.00 0.00 4.10
352 353 0.321671 TTCCTTCTGCTCCTCGTTGG 59.678 55.000 0.00 0.00 37.10 3.77
353 354 1.078848 CCTTCTGCTCCTCGTTGGG 60.079 63.158 0.00 0.00 36.20 4.12
354 355 1.674057 CTTCTGCTCCTCGTTGGGT 59.326 57.895 0.00 0.00 36.20 4.51
355 356 0.035458 CTTCTGCTCCTCGTTGGGTT 59.965 55.000 0.00 0.00 36.20 4.11
356 357 0.034896 TTCTGCTCCTCGTTGGGTTC 59.965 55.000 0.00 0.00 36.20 3.62
357 358 1.118965 TCTGCTCCTCGTTGGGTTCA 61.119 55.000 0.00 0.00 36.20 3.18
358 359 0.250295 CTGCTCCTCGTTGGGTTCAA 60.250 55.000 0.00 0.00 36.20 2.69
373 374 5.475719 TGGGTTCAACACTCTTACTTATCG 58.524 41.667 0.00 0.00 0.00 2.92
374 375 5.244402 TGGGTTCAACACTCTTACTTATCGA 59.756 40.000 0.00 0.00 0.00 3.59
375 376 6.161381 GGGTTCAACACTCTTACTTATCGAA 58.839 40.000 0.00 0.00 0.00 3.71
376 377 6.647895 GGGTTCAACACTCTTACTTATCGAAA 59.352 38.462 0.00 0.00 0.00 3.46
377 378 7.148623 GGGTTCAACACTCTTACTTATCGAAAG 60.149 40.741 0.00 0.00 0.00 2.62
378 379 7.148623 GGTTCAACACTCTTACTTATCGAAAGG 60.149 40.741 10.65 0.00 0.00 3.11
379 380 7.223260 TCAACACTCTTACTTATCGAAAGGA 57.777 36.000 10.65 1.49 0.00 3.36
380 381 7.088905 TCAACACTCTTACTTATCGAAAGGAC 58.911 38.462 10.65 0.00 0.00 3.85
381 382 6.837471 ACACTCTTACTTATCGAAAGGACT 57.163 37.500 10.65 0.00 0.00 3.85
382 383 7.934855 ACACTCTTACTTATCGAAAGGACTA 57.065 36.000 10.65 0.00 0.00 2.59
383 384 7.760437 ACACTCTTACTTATCGAAAGGACTAC 58.240 38.462 10.65 0.00 0.00 2.73
384 385 6.906143 CACTCTTACTTATCGAAAGGACTACG 59.094 42.308 10.65 0.00 0.00 3.51
385 386 6.820656 ACTCTTACTTATCGAAAGGACTACGA 59.179 38.462 10.65 0.00 40.18 3.43
386 387 7.498570 ACTCTTACTTATCGAAAGGACTACGAT 59.501 37.037 14.84 14.84 46.07 3.73
387 388 8.893219 TCTTACTTATCGAAAGGACTACGATA 57.107 34.615 13.42 13.42 44.33 2.92
388 389 8.986847 TCTTACTTATCGAAAGGACTACGATAG 58.013 37.037 15.42 13.25 45.19 2.08
389 390 8.893219 TTACTTATCGAAAGGACTACGATAGA 57.107 34.615 15.42 9.84 45.19 1.98
390 391 7.982761 ACTTATCGAAAGGACTACGATAGAT 57.017 36.000 15.42 9.33 45.19 1.98
391 392 8.031848 ACTTATCGAAAGGACTACGATAGATC 57.968 38.462 15.42 0.00 45.19 2.75
392 393 5.883503 ATCGAAAGGACTACGATAGATCC 57.116 43.478 10.82 0.00 43.32 3.36
393 394 4.070716 TCGAAAGGACTACGATAGATCCC 58.929 47.826 0.00 0.00 41.38 3.85
394 395 3.190953 CGAAAGGACTACGATAGATCCCC 59.809 52.174 0.00 0.00 41.38 4.81
395 396 4.409187 GAAAGGACTACGATAGATCCCCT 58.591 47.826 0.00 0.00 41.38 4.79
396 397 5.568392 GAAAGGACTACGATAGATCCCCTA 58.432 45.833 0.00 0.00 41.38 3.53
397 398 4.573021 AGGACTACGATAGATCCCCTAC 57.427 50.000 0.00 0.00 41.38 3.18
398 399 3.915073 AGGACTACGATAGATCCCCTACA 59.085 47.826 0.00 0.00 41.38 2.74
399 400 4.009002 GGACTACGATAGATCCCCTACAC 58.991 52.174 0.00 0.00 41.38 2.90
400 401 4.263418 GGACTACGATAGATCCCCTACACT 60.263 50.000 0.00 0.00 41.38 3.55
401 402 5.315348 GACTACGATAGATCCCCTACACTT 58.685 45.833 0.00 0.00 41.38 3.16
402 403 5.071370 ACTACGATAGATCCCCTACACTTG 58.929 45.833 0.00 0.00 41.38 3.16
403 404 3.912248 ACGATAGATCCCCTACACTTGT 58.088 45.455 0.00 0.00 41.38 3.16
404 405 3.637229 ACGATAGATCCCCTACACTTGTG 59.363 47.826 0.00 0.00 41.38 3.33
405 406 3.005897 CGATAGATCCCCTACACTTGTGG 59.994 52.174 5.72 0.00 39.76 4.17
406 407 1.584724 AGATCCCCTACACTTGTGGG 58.415 55.000 4.80 4.80 45.14 4.61
407 408 1.203440 AGATCCCCTACACTTGTGGGT 60.203 52.381 10.56 0.00 44.20 4.51
408 409 1.209747 GATCCCCTACACTTGTGGGTC 59.790 57.143 10.56 0.00 44.20 4.46
409 410 0.104882 TCCCCTACACTTGTGGGTCA 60.105 55.000 10.56 0.00 44.20 4.02
410 411 0.991920 CCCCTACACTTGTGGGTCAT 59.008 55.000 10.56 0.00 44.20 3.06
411 412 1.065418 CCCCTACACTTGTGGGTCATC 60.065 57.143 10.56 0.00 44.20 2.92
412 413 1.628340 CCCTACACTTGTGGGTCATCA 59.372 52.381 10.56 0.00 44.20 3.07
419 420 0.602638 TTGTGGGTCATCAGTGCGTC 60.603 55.000 0.00 0.00 0.00 5.19
461 463 2.785357 TTTTTCCCTTGGGTGGTGAT 57.215 45.000 5.51 0.00 0.00 3.06
462 464 2.785357 TTTTCCCTTGGGTGGTGATT 57.215 45.000 5.51 0.00 0.00 2.57
465 467 1.381867 TCCCTTGGGTGGTGATTGAT 58.618 50.000 5.51 0.00 0.00 2.57
478 480 3.310774 GGTGATTGATGTTGGTCGAGATG 59.689 47.826 0.00 0.00 0.00 2.90
480 482 1.737838 TTGATGTTGGTCGAGATGCC 58.262 50.000 0.00 0.00 0.00 4.40
481 483 0.612744 TGATGTTGGTCGAGATGCCA 59.387 50.000 0.00 0.00 0.00 4.92
541 553 4.196971 GTGTTTGGTCAAGTTAGAGTGGT 58.803 43.478 0.00 0.00 0.00 4.16
566 578 6.537355 TCTTCCTTCTCATTTTGTGTGATCT 58.463 36.000 0.00 0.00 31.03 2.75
746 787 3.959293 TGATGATGATTTGTGGAGCTGT 58.041 40.909 0.00 0.00 0.00 4.40
797 838 3.733443 AAGAAAAGGCGCTCAACAAAT 57.267 38.095 7.64 0.00 0.00 2.32
816 937 0.685097 TTTCCCTCGAAGACTGGTGG 59.315 55.000 0.00 0.00 0.00 4.61
837 1076 4.225717 TGGTGGATGTCAATCTGATTCTCA 59.774 41.667 0.00 3.53 32.95 3.27
877 1116 4.161565 ACATTCAAGCCCGTTATAGACTCA 59.838 41.667 0.00 0.00 0.00 3.41
1180 1431 0.661552 CCTCGTCGGCTTCTTCGATA 59.338 55.000 0.00 0.00 38.93 2.92
1181 1432 1.065102 CCTCGTCGGCTTCTTCGATAA 59.935 52.381 0.00 0.00 38.93 1.75
1277 1528 0.617820 TTCTCCTTCCCCTTCCTCCG 60.618 60.000 0.00 0.00 0.00 4.63
1305 1556 2.824071 CCAGCGCCTGGCACATTTTC 62.824 60.000 20.29 0.00 45.13 2.29
1306 1557 2.125952 GCGCCTGGCACATTTTCC 60.126 61.111 20.29 0.00 42.87 3.13
2103 2390 3.005791 CCAACTTTCCACCATTTCTGTCC 59.994 47.826 0.00 0.00 0.00 4.02
2180 2475 7.666623 TCACTTAGTTATCACACATCTTGTCA 58.333 34.615 0.00 0.00 35.67 3.58
2373 2972 5.048224 GCATAGCATGAGTAGCATTTTGGAT 60.048 40.000 0.00 0.00 34.15 3.41
2527 4901 2.482142 CCGGTCAAGCTGGAGTTATCTC 60.482 54.545 0.00 0.00 46.81 2.75
2544 4918 9.376075 GAGTTATCTCATTCACATTTCTCTTGA 57.624 33.333 0.00 0.00 40.18 3.02
2571 4945 1.130054 AAGCAGGGAGGCAAGTCTGA 61.130 55.000 0.00 0.00 35.83 3.27
2573 4947 0.833287 GCAGGGAGGCAAGTCTGATA 59.167 55.000 0.00 0.00 0.00 2.15
2578 4952 2.486191 GGGAGGCAAGTCTGATATGGTG 60.486 54.545 0.00 0.00 0.00 4.17
2581 4955 4.517285 GAGGCAAGTCTGATATGGTGAAA 58.483 43.478 0.00 0.00 0.00 2.69
2582 4956 4.922206 AGGCAAGTCTGATATGGTGAAAA 58.078 39.130 0.00 0.00 0.00 2.29
2583 4957 5.324409 AGGCAAGTCTGATATGGTGAAAAA 58.676 37.500 0.00 0.00 0.00 1.94
2587 4961 8.250332 GGCAAGTCTGATATGGTGAAAAATTTA 58.750 33.333 0.00 0.00 0.00 1.40
2588 4962 9.638239 GCAAGTCTGATATGGTGAAAAATTTAA 57.362 29.630 0.00 0.00 0.00 1.52
2617 4991 0.029300 CCATTCCGTTTATGGCGCTG 59.971 55.000 7.64 0.00 36.43 5.18
2620 4994 1.083489 TTCCGTTTATGGCGCTGAAG 58.917 50.000 7.64 0.00 0.00 3.02
2623 4997 1.202031 CCGTTTATGGCGCTGAAGTTC 60.202 52.381 7.64 0.00 0.00 3.01
2631 5005 3.407698 TGGCGCTGAAGTTCTTTTATGA 58.592 40.909 7.64 0.00 0.00 2.15
2693 5072 2.159430 TCCGACTTGATTGCAAATGACG 59.841 45.455 1.71 6.27 32.73 4.35
2694 5073 2.159430 CCGACTTGATTGCAAATGACGA 59.841 45.455 1.71 0.00 32.73 4.20
2696 5075 4.033932 CCGACTTGATTGCAAATGACGATA 59.966 41.667 1.71 0.00 32.73 2.92
2697 5076 5.447144 CCGACTTGATTGCAAATGACGATAA 60.447 40.000 1.71 0.00 32.73 1.75
2698 5077 5.674148 CGACTTGATTGCAAATGACGATAAG 59.326 40.000 1.71 2.50 32.73 1.73
2712 5091 7.807977 ATGACGATAAGAAGCACCATAAAAT 57.192 32.000 0.00 0.00 0.00 1.82
2715 5094 9.168451 TGACGATAAGAAGCACCATAAAATAAA 57.832 29.630 0.00 0.00 0.00 1.40
2773 5152 8.949798 ACCCAATATTATCCCTATGGAACTAT 57.050 34.615 0.00 0.00 45.98 2.12
2776 5155 9.838339 CCAATATTATCCCTATGGAACTATGTC 57.162 37.037 0.00 0.00 45.98 3.06
2780 5159 7.782897 TTATCCCTATGGAACTATGTCTCAG 57.217 40.000 0.00 0.00 45.98 3.35
2781 5160 5.403558 TCCCTATGGAACTATGTCTCAGA 57.596 43.478 0.00 0.00 37.86 3.27
2782 5161 5.777449 TCCCTATGGAACTATGTCTCAGAA 58.223 41.667 0.00 0.00 37.86 3.02
2783 5162 5.835819 TCCCTATGGAACTATGTCTCAGAAG 59.164 44.000 0.00 0.00 37.86 2.85
2784 5163 5.600484 CCCTATGGAACTATGTCTCAGAAGT 59.400 44.000 0.00 0.00 0.00 3.01
2785 5164 6.778069 CCCTATGGAACTATGTCTCAGAAGTA 59.222 42.308 0.00 0.00 0.00 2.24
2786 5165 7.040062 CCCTATGGAACTATGTCTCAGAAGTAG 60.040 44.444 0.00 0.00 0.00 2.57
2787 5166 7.504238 CCTATGGAACTATGTCTCAGAAGTAGT 59.496 40.741 0.00 0.00 0.00 2.73
2803 5182 8.478877 TCAGAAGTAGTCTTGAAGGATTATTCC 58.521 37.037 0.00 0.00 37.01 3.01
2806 5185 8.152023 AAGTAGTCTTGAAGGATTATTCCTGT 57.848 34.615 6.94 0.00 40.92 4.00
2846 5225 7.619965 CATTTTACCAAGTATTTCCCAATGGT 58.380 34.615 0.00 0.00 43.25 3.55
2866 5245 9.184523 CAATGGTAAGACCTATGGATTGTTTTA 57.815 33.333 0.00 0.00 39.58 1.52
2867 5246 8.747538 ATGGTAAGACCTATGGATTGTTTTAC 57.252 34.615 0.00 0.00 39.58 2.01
2888 5268 5.446143 ACTCGCAACTCCTGAATATCTAG 57.554 43.478 0.00 0.00 0.00 2.43
2902 5282 5.405873 TGAATATCTAGAGTCTGAGTACGCG 59.594 44.000 3.53 3.53 0.00 6.01
2911 5884 3.252701 AGTCTGAGTACGCGTATATTGGG 59.747 47.826 23.56 10.77 0.00 4.12
2948 5921 9.847224 TTGATTAGAGAAGTAAAAGAAAGGTGT 57.153 29.630 0.00 0.00 0.00 4.16
2949 5922 9.273016 TGATTAGAGAAGTAAAAGAAAGGTGTG 57.727 33.333 0.00 0.00 0.00 3.82
2950 5923 9.274206 GATTAGAGAAGTAAAAGAAAGGTGTGT 57.726 33.333 0.00 0.00 0.00 3.72
2951 5924 6.927294 AGAGAAGTAAAAGAAAGGTGTGTG 57.073 37.500 0.00 0.00 0.00 3.82
2952 5925 5.297029 AGAGAAGTAAAAGAAAGGTGTGTGC 59.703 40.000 0.00 0.00 0.00 4.57
2953 5926 4.947388 AGAAGTAAAAGAAAGGTGTGTGCA 59.053 37.500 0.00 0.00 0.00 4.57
2954 5927 5.417580 AGAAGTAAAAGAAAGGTGTGTGCAA 59.582 36.000 0.00 0.00 0.00 4.08
3101 6074 3.762407 TTCACATTCTTCCGGTCAAGA 57.238 42.857 0.00 0.44 0.00 3.02
3486 6635 7.290110 AGGGAGTATTTTATTGCTTAATGGC 57.710 36.000 0.00 0.00 0.00 4.40
3690 6864 2.934553 CTCAAGATTGCGCTGATTGAGA 59.065 45.455 26.56 11.23 46.22 3.27
3758 6932 2.841442 ACTGGTAACTTGTGGCTCTC 57.159 50.000 0.00 0.00 37.61 3.20
3833 7007 2.093021 TGATCTGGCAATGATCGGTTCA 60.093 45.455 10.91 0.00 42.18 3.18
4020 7195 0.538584 TACTCCATGAGCAGTGGCAG 59.461 55.000 0.00 0.00 44.61 4.85
4045 7220 5.715070 AGTGAAGTGAATGTGCTAGTACTC 58.285 41.667 12.42 3.12 0.00 2.59
4048 7223 7.176865 AGTGAAGTGAATGTGCTAGTACTCTTA 59.823 37.037 12.42 0.00 0.00 2.10
4050 7225 8.029522 TGAAGTGAATGTGCTAGTACTCTTAAG 58.970 37.037 12.42 0.00 0.00 1.85
4061 7247 6.206048 GCTAGTACTCTTAAGGAGGATCTGAC 59.794 46.154 0.00 0.00 45.83 3.51
4062 7248 5.451354 AGTACTCTTAAGGAGGATCTGACC 58.549 45.833 1.85 0.00 45.83 4.02
4077 7263 1.946768 CTGACCGTCCTTTTCTTTGCA 59.053 47.619 0.00 0.00 0.00 4.08
4091 7356 8.213812 CCTTTTCTTTGCATATTGTACAAAACG 58.786 33.333 13.23 4.84 33.24 3.60
4111 7376 5.280654 ACGGAGTTACTTTTGGTTCTGTA 57.719 39.130 0.00 0.00 37.78 2.74
4163 7428 2.742053 GCCAAGTTCGTTGAGAGCATTA 59.258 45.455 0.00 0.00 38.60 1.90
4164 7429 3.181516 GCCAAGTTCGTTGAGAGCATTAG 60.182 47.826 0.00 0.00 38.60 1.73
4165 7430 3.181516 CCAAGTTCGTTGAGAGCATTAGC 60.182 47.826 0.00 0.00 38.60 3.09
4166 7431 3.319137 AGTTCGTTGAGAGCATTAGCA 57.681 42.857 0.00 0.00 45.49 3.49
4167 7432 3.866651 AGTTCGTTGAGAGCATTAGCAT 58.133 40.909 0.00 0.00 45.49 3.79
4168 7433 4.256920 AGTTCGTTGAGAGCATTAGCATT 58.743 39.130 0.00 0.00 45.49 3.56
4169 7434 4.331168 AGTTCGTTGAGAGCATTAGCATTC 59.669 41.667 0.00 0.00 45.49 2.67
4170 7435 3.860641 TCGTTGAGAGCATTAGCATTCA 58.139 40.909 0.00 0.00 45.49 2.57
4171 7436 3.618594 TCGTTGAGAGCATTAGCATTCAC 59.381 43.478 0.00 0.00 45.49 3.18
4195 7460 7.119699 CACTAAACATGCTTCCTCTGTAAATGA 59.880 37.037 0.00 0.00 0.00 2.57
4224 7489 2.349590 TCATCGTGCTCATTCTTGGTG 58.650 47.619 0.00 0.00 0.00 4.17
4229 7494 3.067106 CGTGCTCATTCTTGGTGTACTT 58.933 45.455 0.00 0.00 0.00 2.24
4232 7497 4.153117 GTGCTCATTCTTGGTGTACTTGAG 59.847 45.833 0.00 0.00 33.86 3.02
4318 7642 2.485426 CACTTCTCTTACACGACCCGTA 59.515 50.000 0.00 0.00 38.32 4.02
4357 7682 4.235762 ACAACCGACGCAGGCAGT 62.236 61.111 0.00 0.00 33.69 4.40
4418 7796 6.642540 CCTTGTGCCTAGAAGAAAATGAAAAC 59.357 38.462 0.00 0.00 29.02 2.43
4436 7814 7.205737 TGAAAACCGAAAAGTTACCCTTATC 57.794 36.000 0.00 0.00 31.48 1.75
4440 7818 5.872963 ACCGAAAAGTTACCCTTATCAGTT 58.127 37.500 0.00 0.00 31.48 3.16
4446 7824 8.990163 AAAAGTTACCCTTATCAGTTCAGAAA 57.010 30.769 0.00 0.00 31.48 2.52
4460 7853 7.608153 TCAGTTCAGAAATTAAGACATCGGTA 58.392 34.615 0.00 0.00 0.00 4.02
4463 7856 7.760340 AGTTCAGAAATTAAGACATCGGTAGTC 59.240 37.037 0.00 0.00 36.26 2.59
4525 7918 8.052748 TCACAGTTAAGCATTATCCATAAAGGT 58.947 33.333 0.00 0.00 39.02 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.729868 AGCATCCCACTTATGATTAACCC 58.270 43.478 0.00 0.00 0.00 4.11
1 2 5.594317 ACAAGCATCCCACTTATGATTAACC 59.406 40.000 0.00 0.00 31.55 2.85
2 3 6.238759 GGACAAGCATCCCACTTATGATTAAC 60.239 42.308 0.00 0.00 31.55 2.01
3 4 5.827797 GGACAAGCATCCCACTTATGATTAA 59.172 40.000 0.00 0.00 31.55 1.40
4 5 5.104151 TGGACAAGCATCCCACTTATGATTA 60.104 40.000 0.00 0.00 38.06 1.75
5 6 4.210331 GGACAAGCATCCCACTTATGATT 58.790 43.478 0.00 0.00 33.44 2.57
6 7 3.202818 TGGACAAGCATCCCACTTATGAT 59.797 43.478 0.00 0.00 38.06 2.45
7 8 2.575735 TGGACAAGCATCCCACTTATGA 59.424 45.455 0.00 0.00 38.06 2.15
8 9 3.003394 TGGACAAGCATCCCACTTATG 57.997 47.619 0.00 0.00 38.06 1.90
9 10 3.010584 ACTTGGACAAGCATCCCACTTAT 59.989 43.478 11.73 0.00 41.99 1.73
10 11 2.375174 ACTTGGACAAGCATCCCACTTA 59.625 45.455 11.73 0.00 41.99 2.24
11 12 1.145738 ACTTGGACAAGCATCCCACTT 59.854 47.619 11.73 0.00 41.99 3.16
12 13 0.773644 ACTTGGACAAGCATCCCACT 59.226 50.000 11.73 0.00 41.99 4.00
13 14 1.620822 AACTTGGACAAGCATCCCAC 58.379 50.000 11.73 0.00 41.99 4.61
14 15 2.290896 CCTAACTTGGACAAGCATCCCA 60.291 50.000 11.73 0.00 41.99 4.37
15 16 2.369394 CCTAACTTGGACAAGCATCCC 58.631 52.381 11.73 0.00 41.99 3.85
16 17 2.369394 CCCTAACTTGGACAAGCATCC 58.631 52.381 11.73 0.00 41.99 3.51
17 18 1.745653 GCCCTAACTTGGACAAGCATC 59.254 52.381 11.73 0.00 41.99 3.91
18 19 1.075374 TGCCCTAACTTGGACAAGCAT 59.925 47.619 11.73 4.40 41.99 3.79
19 20 0.476338 TGCCCTAACTTGGACAAGCA 59.524 50.000 11.73 1.54 41.99 3.91
20 21 1.168714 CTGCCCTAACTTGGACAAGC 58.831 55.000 11.73 0.00 41.99 4.01
21 22 2.568623 ACTGCCCTAACTTGGACAAG 57.431 50.000 10.34 10.34 43.79 3.16
22 23 2.039348 GGTACTGCCCTAACTTGGACAA 59.961 50.000 0.00 0.00 0.00 3.18
23 24 1.626825 GGTACTGCCCTAACTTGGACA 59.373 52.381 0.00 0.00 0.00 4.02
24 25 2.398252 GGTACTGCCCTAACTTGGAC 57.602 55.000 0.00 0.00 0.00 4.02
35 36 2.746277 CGGCACTTGGGTACTGCC 60.746 66.667 11.99 11.99 41.84 4.85
36 37 2.746277 CCGGCACTTGGGTACTGC 60.746 66.667 0.00 0.00 0.00 4.40
37 38 1.375523 GACCGGCACTTGGGTACTG 60.376 63.158 0.00 0.00 36.46 2.74
38 39 2.590114 GGACCGGCACTTGGGTACT 61.590 63.158 0.00 0.00 36.46 2.73
39 40 2.046604 GGACCGGCACTTGGGTAC 60.047 66.667 0.00 0.00 36.46 3.34
40 41 2.527123 TGGACCGGCACTTGGGTA 60.527 61.111 0.00 0.00 36.46 3.69
41 42 4.265056 GTGGACCGGCACTTGGGT 62.265 66.667 0.00 0.00 39.83 4.51
44 45 4.263572 TGGGTGGACCGGCACTTG 62.264 66.667 0.00 0.00 44.64 3.16
45 46 4.265056 GTGGGTGGACCGGCACTT 62.265 66.667 0.00 0.00 44.64 3.16
47 48 2.265467 ATATGTGGGTGGACCGGCAC 62.265 60.000 0.00 1.66 44.64 5.01
48 49 1.978455 GATATGTGGGTGGACCGGCA 61.978 60.000 0.00 0.00 44.64 5.69
49 50 1.227853 GATATGTGGGTGGACCGGC 60.228 63.158 0.00 0.00 44.64 6.13
50 51 0.544223 TTGATATGTGGGTGGACCGG 59.456 55.000 0.00 0.00 44.64 5.28
51 52 2.411628 TTTGATATGTGGGTGGACCG 57.588 50.000 0.00 0.00 44.64 4.79
52 53 6.068010 TGATAATTTGATATGTGGGTGGACC 58.932 40.000 0.00 0.00 40.81 4.46
53 54 7.581213 TTGATAATTTGATATGTGGGTGGAC 57.419 36.000 0.00 0.00 0.00 4.02
54 55 7.838696 ACTTTGATAATTTGATATGTGGGTGGA 59.161 33.333 0.00 0.00 0.00 4.02
55 56 8.010733 ACTTTGATAATTTGATATGTGGGTGG 57.989 34.615 0.00 0.00 0.00 4.61
56 57 9.950680 GTACTTTGATAATTTGATATGTGGGTG 57.049 33.333 0.00 0.00 0.00 4.61
57 58 9.131791 GGTACTTTGATAATTTGATATGTGGGT 57.868 33.333 0.00 0.00 0.00 4.51
58 59 8.289618 CGGTACTTTGATAATTTGATATGTGGG 58.710 37.037 0.00 0.00 0.00 4.61
59 60 9.051679 TCGGTACTTTGATAATTTGATATGTGG 57.948 33.333 0.00 0.00 0.00 4.17
62 63 9.580916 CGTTCGGTACTTTGATAATTTGATATG 57.419 33.333 0.00 0.00 0.00 1.78
63 64 8.280497 GCGTTCGGTACTTTGATAATTTGATAT 58.720 33.333 0.00 0.00 0.00 1.63
64 65 7.515528 CGCGTTCGGTACTTTGATAATTTGATA 60.516 37.037 0.00 0.00 0.00 2.15
65 66 6.483687 GCGTTCGGTACTTTGATAATTTGAT 58.516 36.000 0.00 0.00 0.00 2.57
66 67 5.444877 CGCGTTCGGTACTTTGATAATTTGA 60.445 40.000 0.00 0.00 0.00 2.69
67 68 4.721977 CGCGTTCGGTACTTTGATAATTTG 59.278 41.667 0.00 0.00 0.00 2.32
68 69 4.626604 TCGCGTTCGGTACTTTGATAATTT 59.373 37.500 5.77 0.00 36.13 1.82
69 70 4.175516 TCGCGTTCGGTACTTTGATAATT 58.824 39.130 5.77 0.00 36.13 1.40
70 71 3.772932 TCGCGTTCGGTACTTTGATAAT 58.227 40.909 5.77 0.00 36.13 1.28
71 72 3.214697 TCGCGTTCGGTACTTTGATAA 57.785 42.857 5.77 0.00 36.13 1.75
72 73 2.917701 TCGCGTTCGGTACTTTGATA 57.082 45.000 5.77 0.00 36.13 2.15
73 74 2.068837 TTCGCGTTCGGTACTTTGAT 57.931 45.000 5.77 0.00 36.13 2.57
74 75 1.987770 GATTCGCGTTCGGTACTTTGA 59.012 47.619 5.77 0.00 36.13 2.69
75 76 1.990563 AGATTCGCGTTCGGTACTTTG 59.009 47.619 5.77 0.00 36.13 2.77
76 77 2.358939 AGATTCGCGTTCGGTACTTT 57.641 45.000 5.77 0.00 36.13 2.66
77 78 2.358939 AAGATTCGCGTTCGGTACTT 57.641 45.000 5.77 1.10 36.13 2.24
78 79 3.065786 TCATAAGATTCGCGTTCGGTACT 59.934 43.478 5.77 0.00 36.13 2.73
79 80 3.365832 TCATAAGATTCGCGTTCGGTAC 58.634 45.455 5.77 0.00 36.13 3.34
80 81 3.696281 TCATAAGATTCGCGTTCGGTA 57.304 42.857 5.77 3.70 36.13 4.02
81 82 2.572191 TCATAAGATTCGCGTTCGGT 57.428 45.000 5.77 1.53 36.13 4.69
82 83 3.245284 ACATTCATAAGATTCGCGTTCGG 59.755 43.478 5.77 0.00 36.13 4.30
83 84 4.026886 TCACATTCATAAGATTCGCGTTCG 60.027 41.667 5.77 0.00 0.00 3.95
84 85 5.389642 TCACATTCATAAGATTCGCGTTC 57.610 39.130 5.77 4.72 0.00 3.95
85 86 5.523552 TCATCACATTCATAAGATTCGCGTT 59.476 36.000 5.77 0.00 0.00 4.84
86 87 5.049828 TCATCACATTCATAAGATTCGCGT 58.950 37.500 5.77 0.00 0.00 6.01
87 88 5.580911 TCATCACATTCATAAGATTCGCG 57.419 39.130 0.00 0.00 0.00 5.87
88 89 7.912250 AGTTTTCATCACATTCATAAGATTCGC 59.088 33.333 0.00 0.00 0.00 4.70
92 93 9.624373 AGCTAGTTTTCATCACATTCATAAGAT 57.376 29.630 0.00 0.00 0.00 2.40
93 94 9.453572 AAGCTAGTTTTCATCACATTCATAAGA 57.546 29.630 0.00 0.00 0.00 2.10
94 95 9.499585 CAAGCTAGTTTTCATCACATTCATAAG 57.500 33.333 0.00 0.00 0.00 1.73
95 96 9.230122 TCAAGCTAGTTTTCATCACATTCATAA 57.770 29.630 0.00 0.00 0.00 1.90
96 97 8.668353 GTCAAGCTAGTTTTCATCACATTCATA 58.332 33.333 0.00 0.00 0.00 2.15
97 98 7.533426 GTCAAGCTAGTTTTCATCACATTCAT 58.467 34.615 0.00 0.00 0.00 2.57
98 99 6.347644 CGTCAAGCTAGTTTTCATCACATTCA 60.348 38.462 0.00 0.00 0.00 2.57
99 100 6.017933 CGTCAAGCTAGTTTTCATCACATTC 58.982 40.000 0.00 0.00 0.00 2.67
100 101 5.700832 TCGTCAAGCTAGTTTTCATCACATT 59.299 36.000 0.00 0.00 0.00 2.71
101 102 5.237815 TCGTCAAGCTAGTTTTCATCACAT 58.762 37.500 0.00 0.00 0.00 3.21
102 103 4.627058 TCGTCAAGCTAGTTTTCATCACA 58.373 39.130 0.00 0.00 0.00 3.58
103 104 5.786401 ATCGTCAAGCTAGTTTTCATCAC 57.214 39.130 0.00 0.00 0.00 3.06
104 105 8.492673 AATTATCGTCAAGCTAGTTTTCATCA 57.507 30.769 0.00 0.00 0.00 3.07
105 106 8.604035 TGAATTATCGTCAAGCTAGTTTTCATC 58.396 33.333 0.00 0.00 0.00 2.92
106 107 8.391106 GTGAATTATCGTCAAGCTAGTTTTCAT 58.609 33.333 0.00 0.00 0.00 2.57
107 108 7.386573 TGTGAATTATCGTCAAGCTAGTTTTCA 59.613 33.333 0.00 0.00 0.00 2.69
108 109 7.739295 TGTGAATTATCGTCAAGCTAGTTTTC 58.261 34.615 0.00 0.00 0.00 2.29
109 110 7.667043 TGTGAATTATCGTCAAGCTAGTTTT 57.333 32.000 0.00 0.00 0.00 2.43
110 111 7.667043 TTGTGAATTATCGTCAAGCTAGTTT 57.333 32.000 0.00 0.00 0.00 2.66
111 112 7.334421 ACATTGTGAATTATCGTCAAGCTAGTT 59.666 33.333 0.00 0.00 0.00 2.24
112 113 6.818644 ACATTGTGAATTATCGTCAAGCTAGT 59.181 34.615 0.00 0.00 0.00 2.57
113 114 7.121911 CACATTGTGAATTATCGTCAAGCTAG 58.878 38.462 11.45 0.00 35.23 3.42
114 115 6.593770 ACACATTGTGAATTATCGTCAAGCTA 59.406 34.615 23.12 0.00 36.96 3.32
115 116 5.412594 ACACATTGTGAATTATCGTCAAGCT 59.587 36.000 23.12 0.00 36.96 3.74
116 117 5.631026 ACACATTGTGAATTATCGTCAAGC 58.369 37.500 23.12 0.00 36.96 4.01
117 118 6.092670 AGGACACATTGTGAATTATCGTCAAG 59.907 38.462 23.12 0.00 36.96 3.02
118 119 5.937540 AGGACACATTGTGAATTATCGTCAA 59.062 36.000 23.12 0.00 36.96 3.18
119 120 5.487433 AGGACACATTGTGAATTATCGTCA 58.513 37.500 23.12 0.00 36.96 4.35
120 121 5.580691 TGAGGACACATTGTGAATTATCGTC 59.419 40.000 23.12 18.14 36.96 4.20
121 122 5.487433 TGAGGACACATTGTGAATTATCGT 58.513 37.500 23.12 10.88 36.96 3.73
122 123 5.007039 CCTGAGGACACATTGTGAATTATCG 59.993 44.000 23.12 5.89 36.96 2.92
123 124 6.115446 TCCTGAGGACACATTGTGAATTATC 58.885 40.000 23.12 9.47 36.96 1.75
124 125 6.065976 TCCTGAGGACACATTGTGAATTAT 57.934 37.500 23.12 0.00 36.96 1.28
125 126 5.491070 CTCCTGAGGACACATTGTGAATTA 58.509 41.667 23.12 4.74 36.96 1.40
126 127 4.330250 CTCCTGAGGACACATTGTGAATT 58.670 43.478 23.12 7.49 36.96 2.17
127 128 3.871463 GCTCCTGAGGACACATTGTGAAT 60.871 47.826 23.12 8.16 36.96 2.57
128 129 2.550855 GCTCCTGAGGACACATTGTGAA 60.551 50.000 23.12 2.91 36.96 3.18
129 130 1.002430 GCTCCTGAGGACACATTGTGA 59.998 52.381 23.12 0.00 36.96 3.58
130 131 1.002888 AGCTCCTGAGGACACATTGTG 59.997 52.381 15.18 15.18 39.75 3.33
131 132 1.277557 GAGCTCCTGAGGACACATTGT 59.722 52.381 0.87 0.00 0.00 2.71
132 133 1.406614 GGAGCTCCTGAGGACACATTG 60.407 57.143 26.25 0.00 0.00 2.82
133 134 0.908198 GGAGCTCCTGAGGACACATT 59.092 55.000 26.25 0.00 0.00 2.71
134 135 0.042431 AGGAGCTCCTGAGGACACAT 59.958 55.000 34.74 6.20 46.55 3.21
135 136 1.466979 AGGAGCTCCTGAGGACACA 59.533 57.895 34.74 0.00 46.55 3.72
136 137 4.451544 AGGAGCTCCTGAGGACAC 57.548 61.111 34.74 3.36 46.55 3.67
144 145 8.667737 AATTCTAATGATGAATAAGGAGCTCCT 58.332 33.333 30.40 30.40 39.42 3.69
145 146 8.860780 AATTCTAATGATGAATAAGGAGCTCC 57.139 34.615 26.22 26.22 34.19 4.70
147 148 9.638176 ACAAATTCTAATGATGAATAAGGAGCT 57.362 29.630 0.00 0.00 34.19 4.09
148 149 9.890352 GACAAATTCTAATGATGAATAAGGAGC 57.110 33.333 0.00 0.00 34.19 4.70
150 151 9.919416 TGGACAAATTCTAATGATGAATAAGGA 57.081 29.630 0.00 0.00 34.19 3.36
155 156 9.471702 AAGTCTGGACAAATTCTAATGATGAAT 57.528 29.630 3.51 0.00 35.88 2.57
156 157 8.868522 AAGTCTGGACAAATTCTAATGATGAA 57.131 30.769 3.51 0.00 0.00 2.57
159 160 9.566432 GGATAAGTCTGGACAAATTCTAATGAT 57.434 33.333 3.51 0.00 0.00 2.45
160 161 8.772250 AGGATAAGTCTGGACAAATTCTAATGA 58.228 33.333 3.51 0.00 0.00 2.57
161 162 8.970859 AGGATAAGTCTGGACAAATTCTAATG 57.029 34.615 3.51 0.00 0.00 1.90
162 163 9.981460 AAAGGATAAGTCTGGACAAATTCTAAT 57.019 29.630 3.51 0.00 0.00 1.73
163 164 9.231297 CAAAGGATAAGTCTGGACAAATTCTAA 57.769 33.333 3.51 0.00 0.00 2.10
164 165 7.336931 GCAAAGGATAAGTCTGGACAAATTCTA 59.663 37.037 3.51 0.00 0.00 2.10
165 166 6.151817 GCAAAGGATAAGTCTGGACAAATTCT 59.848 38.462 3.51 0.00 0.00 2.40
166 167 6.151817 AGCAAAGGATAAGTCTGGACAAATTC 59.848 38.462 3.51 0.00 0.00 2.17
167 168 6.012745 AGCAAAGGATAAGTCTGGACAAATT 58.987 36.000 3.51 0.00 0.00 1.82
168 169 5.574188 AGCAAAGGATAAGTCTGGACAAAT 58.426 37.500 3.51 0.00 0.00 2.32
169 170 4.985538 AGCAAAGGATAAGTCTGGACAAA 58.014 39.130 3.51 0.00 0.00 2.83
170 171 4.640771 AGCAAAGGATAAGTCTGGACAA 57.359 40.909 3.51 0.00 0.00 3.18
171 172 4.530553 TGTAGCAAAGGATAAGTCTGGACA 59.469 41.667 3.51 0.00 0.00 4.02
172 173 5.086104 TGTAGCAAAGGATAAGTCTGGAC 57.914 43.478 0.00 0.00 0.00 4.02
173 174 5.957771 ATGTAGCAAAGGATAAGTCTGGA 57.042 39.130 0.00 0.00 0.00 3.86
174 175 8.147642 CTTTATGTAGCAAAGGATAAGTCTGG 57.852 38.462 0.00 0.00 30.82 3.86
185 186 4.202151 GGCCCAATCCTTTATGTAGCAAAG 60.202 45.833 0.00 0.00 33.62 2.77
186 187 3.704061 GGCCCAATCCTTTATGTAGCAAA 59.296 43.478 0.00 0.00 0.00 3.68
187 188 3.295973 GGCCCAATCCTTTATGTAGCAA 58.704 45.455 0.00 0.00 0.00 3.91
188 189 2.243478 TGGCCCAATCCTTTATGTAGCA 59.757 45.455 0.00 0.00 0.00 3.49
189 190 2.623416 GTGGCCCAATCCTTTATGTAGC 59.377 50.000 0.00 0.00 0.00 3.58
190 191 3.117512 AGGTGGCCCAATCCTTTATGTAG 60.118 47.826 0.00 0.00 0.00 2.74
191 192 2.856231 AGGTGGCCCAATCCTTTATGTA 59.144 45.455 0.00 0.00 0.00 2.29
192 193 1.645919 AGGTGGCCCAATCCTTTATGT 59.354 47.619 0.00 0.00 0.00 2.29
193 194 2.431782 CAAGGTGGCCCAATCCTTTATG 59.568 50.000 13.49 3.60 39.22 1.90
194 195 2.750814 CAAGGTGGCCCAATCCTTTAT 58.249 47.619 13.49 0.00 39.22 1.40
195 196 1.894978 GCAAGGTGGCCCAATCCTTTA 60.895 52.381 13.49 0.00 39.22 1.85
196 197 1.194121 GCAAGGTGGCCCAATCCTTT 61.194 55.000 13.49 0.00 39.22 3.11
197 198 1.610379 GCAAGGTGGCCCAATCCTT 60.610 57.895 0.00 6.54 41.53 3.36
198 199 2.037847 GCAAGGTGGCCCAATCCT 59.962 61.111 0.00 0.00 0.00 3.24
199 200 2.037847 AGCAAGGTGGCCCAATCC 59.962 61.111 0.00 0.00 0.00 3.01
200 201 3.010413 GCAGCAAGGTGGCCCAATC 62.010 63.158 0.00 0.00 0.00 2.67
201 202 2.999063 GCAGCAAGGTGGCCCAAT 60.999 61.111 0.00 0.00 0.00 3.16
202 203 4.536526 TGCAGCAAGGTGGCCCAA 62.537 61.111 0.00 0.00 0.00 4.12
204 205 4.982701 AGTGCAGCAAGGTGGCCC 62.983 66.667 0.00 0.00 0.00 5.80
205 206 1.178534 TAAAGTGCAGCAAGGTGGCC 61.179 55.000 0.00 0.00 0.00 5.36
206 207 0.890683 ATAAAGTGCAGCAAGGTGGC 59.109 50.000 0.00 0.00 0.00 5.01
207 208 3.665745 AAATAAAGTGCAGCAAGGTGG 57.334 42.857 0.00 0.00 0.00 4.61
208 209 5.376854 AGTAAATAAAGTGCAGCAAGGTG 57.623 39.130 0.00 0.00 0.00 4.00
209 210 6.405278 AAAGTAAATAAAGTGCAGCAAGGT 57.595 33.333 0.00 0.00 0.00 3.50
210 211 8.986477 AATAAAGTAAATAAAGTGCAGCAAGG 57.014 30.769 0.00 0.00 0.00 3.61
271 272 9.765795 GCACTGAAATTGTAGGTAATAGATAGT 57.234 33.333 0.00 0.00 0.00 2.12
272 273 9.988815 AGCACTGAAATTGTAGGTAATAGATAG 57.011 33.333 0.00 0.00 0.00 2.08
274 275 9.113838 CAAGCACTGAAATTGTAGGTAATAGAT 57.886 33.333 0.00 0.00 0.00 1.98
275 276 7.065803 GCAAGCACTGAAATTGTAGGTAATAGA 59.934 37.037 0.00 0.00 0.00 1.98
276 277 7.148255 TGCAAGCACTGAAATTGTAGGTAATAG 60.148 37.037 0.00 0.00 0.00 1.73
277 278 6.657117 TGCAAGCACTGAAATTGTAGGTAATA 59.343 34.615 0.00 0.00 0.00 0.98
278 279 5.476599 TGCAAGCACTGAAATTGTAGGTAAT 59.523 36.000 0.00 0.00 0.00 1.89
279 280 4.824537 TGCAAGCACTGAAATTGTAGGTAA 59.175 37.500 0.00 0.00 0.00 2.85
280 281 4.393834 TGCAAGCACTGAAATTGTAGGTA 58.606 39.130 0.00 0.00 0.00 3.08
281 282 3.221771 TGCAAGCACTGAAATTGTAGGT 58.778 40.909 0.00 0.00 0.00 3.08
282 283 3.503363 TCTGCAAGCACTGAAATTGTAGG 59.497 43.478 0.00 0.00 37.29 3.18
283 284 4.453478 TCTCTGCAAGCACTGAAATTGTAG 59.547 41.667 0.00 0.00 37.81 2.74
284 285 4.388485 TCTCTGCAAGCACTGAAATTGTA 58.612 39.130 0.00 0.00 0.00 2.41
285 286 3.216800 TCTCTGCAAGCACTGAAATTGT 58.783 40.909 0.00 0.00 0.00 2.71
286 287 3.909776 TCTCTGCAAGCACTGAAATTG 57.090 42.857 0.00 0.00 0.00 2.32
287 288 4.924305 TTTCTCTGCAAGCACTGAAATT 57.076 36.364 11.26 0.00 0.00 1.82
288 289 4.500375 GGTTTTCTCTGCAAGCACTGAAAT 60.500 41.667 14.26 0.00 0.00 2.17
289 290 3.181487 GGTTTTCTCTGCAAGCACTGAAA 60.181 43.478 11.26 11.26 0.00 2.69
290 291 2.358898 GGTTTTCTCTGCAAGCACTGAA 59.641 45.455 0.00 0.00 0.00 3.02
291 292 1.949525 GGTTTTCTCTGCAAGCACTGA 59.050 47.619 0.00 0.00 0.00 3.41
292 293 1.952296 AGGTTTTCTCTGCAAGCACTG 59.048 47.619 0.00 0.00 0.00 3.66
293 294 2.355010 AGGTTTTCTCTGCAAGCACT 57.645 45.000 0.00 0.00 0.00 4.40
294 295 3.565902 AGTAAGGTTTTCTCTGCAAGCAC 59.434 43.478 0.00 0.00 0.00 4.40
295 296 3.565482 CAGTAAGGTTTTCTCTGCAAGCA 59.435 43.478 0.00 0.00 0.00 3.91
296 297 3.815401 TCAGTAAGGTTTTCTCTGCAAGC 59.185 43.478 0.00 0.00 0.00 4.01
297 298 6.377327 TTTCAGTAAGGTTTTCTCTGCAAG 57.623 37.500 0.00 0.00 0.00 4.01
298 299 6.405397 GGTTTTCAGTAAGGTTTTCTCTGCAA 60.405 38.462 0.00 0.00 0.00 4.08
299 300 5.067283 GGTTTTCAGTAAGGTTTTCTCTGCA 59.933 40.000 0.00 0.00 0.00 4.41
300 301 5.067283 TGGTTTTCAGTAAGGTTTTCTCTGC 59.933 40.000 0.00 0.00 0.00 4.26
301 302 6.318900 AGTGGTTTTCAGTAAGGTTTTCTCTG 59.681 38.462 0.00 0.00 0.00 3.35
302 303 6.424032 AGTGGTTTTCAGTAAGGTTTTCTCT 58.576 36.000 0.00 0.00 0.00 3.10
303 304 6.694877 AGTGGTTTTCAGTAAGGTTTTCTC 57.305 37.500 0.00 0.00 0.00 2.87
304 305 8.762481 ATAAGTGGTTTTCAGTAAGGTTTTCT 57.238 30.769 0.00 0.00 0.00 2.52
305 306 8.626526 TGATAAGTGGTTTTCAGTAAGGTTTTC 58.373 33.333 0.00 0.00 0.00 2.29
306 307 8.528044 TGATAAGTGGTTTTCAGTAAGGTTTT 57.472 30.769 0.00 0.00 0.00 2.43
307 308 8.706322 ATGATAAGTGGTTTTCAGTAAGGTTT 57.294 30.769 0.00 0.00 0.00 3.27
308 309 8.706322 AATGATAAGTGGTTTTCAGTAAGGTT 57.294 30.769 0.00 0.00 0.00 3.50
309 310 8.706322 AAATGATAAGTGGTTTTCAGTAAGGT 57.294 30.769 0.00 0.00 0.00 3.50
310 311 8.244113 GGAAATGATAAGTGGTTTTCAGTAAGG 58.756 37.037 0.00 0.00 0.00 2.69
311 312 9.014297 AGGAAATGATAAGTGGTTTTCAGTAAG 57.986 33.333 0.00 0.00 0.00 2.34
312 313 8.934023 AGGAAATGATAAGTGGTTTTCAGTAA 57.066 30.769 0.00 0.00 0.00 2.24
313 314 8.934023 AAGGAAATGATAAGTGGTTTTCAGTA 57.066 30.769 0.00 0.00 0.00 2.74
314 315 7.725844 AGAAGGAAATGATAAGTGGTTTTCAGT 59.274 33.333 0.00 0.00 0.00 3.41
315 316 8.025445 CAGAAGGAAATGATAAGTGGTTTTCAG 58.975 37.037 0.00 0.00 0.00 3.02
316 317 7.523709 GCAGAAGGAAATGATAAGTGGTTTTCA 60.524 37.037 0.00 0.00 0.00 2.69
317 318 6.808704 GCAGAAGGAAATGATAAGTGGTTTTC 59.191 38.462 0.00 0.00 0.00 2.29
318 319 6.494835 AGCAGAAGGAAATGATAAGTGGTTTT 59.505 34.615 0.00 0.00 0.00 2.43
319 320 6.012745 AGCAGAAGGAAATGATAAGTGGTTT 58.987 36.000 0.00 0.00 0.00 3.27
320 321 5.574188 AGCAGAAGGAAATGATAAGTGGTT 58.426 37.500 0.00 0.00 0.00 3.67
321 322 5.184892 AGCAGAAGGAAATGATAAGTGGT 57.815 39.130 0.00 0.00 0.00 4.16
322 323 4.578105 GGAGCAGAAGGAAATGATAAGTGG 59.422 45.833 0.00 0.00 0.00 4.00
323 324 5.435291 AGGAGCAGAAGGAAATGATAAGTG 58.565 41.667 0.00 0.00 0.00 3.16
324 325 5.679601 GAGGAGCAGAAGGAAATGATAAGT 58.320 41.667 0.00 0.00 0.00 2.24
325 326 4.749099 CGAGGAGCAGAAGGAAATGATAAG 59.251 45.833 0.00 0.00 0.00 1.73
326 327 4.162320 ACGAGGAGCAGAAGGAAATGATAA 59.838 41.667 0.00 0.00 0.00 1.75
327 328 3.706594 ACGAGGAGCAGAAGGAAATGATA 59.293 43.478 0.00 0.00 0.00 2.15
328 329 2.503356 ACGAGGAGCAGAAGGAAATGAT 59.497 45.455 0.00 0.00 0.00 2.45
329 330 1.902508 ACGAGGAGCAGAAGGAAATGA 59.097 47.619 0.00 0.00 0.00 2.57
330 331 2.393271 ACGAGGAGCAGAAGGAAATG 57.607 50.000 0.00 0.00 0.00 2.32
331 332 2.616510 CCAACGAGGAGCAGAAGGAAAT 60.617 50.000 0.00 0.00 41.22 2.17
332 333 1.270839 CCAACGAGGAGCAGAAGGAAA 60.271 52.381 0.00 0.00 41.22 3.13
333 334 0.321671 CCAACGAGGAGCAGAAGGAA 59.678 55.000 0.00 0.00 41.22 3.36
334 335 1.544825 CCCAACGAGGAGCAGAAGGA 61.545 60.000 0.00 0.00 41.22 3.36
335 336 1.078848 CCCAACGAGGAGCAGAAGG 60.079 63.158 0.00 0.00 41.22 3.46
336 337 0.035458 AACCCAACGAGGAGCAGAAG 59.965 55.000 0.00 0.00 41.22 2.85
337 338 0.034896 GAACCCAACGAGGAGCAGAA 59.965 55.000 0.00 0.00 41.22 3.02
338 339 1.118965 TGAACCCAACGAGGAGCAGA 61.119 55.000 0.00 0.00 41.22 4.26
339 340 0.250295 TTGAACCCAACGAGGAGCAG 60.250 55.000 0.00 0.00 41.22 4.24
340 341 0.534203 GTTGAACCCAACGAGGAGCA 60.534 55.000 0.00 0.00 42.60 4.26
341 342 2.244946 GTTGAACCCAACGAGGAGC 58.755 57.895 0.00 0.00 42.60 4.70
349 350 5.929992 CGATAAGTAAGAGTGTTGAACCCAA 59.070 40.000 0.00 0.00 0.00 4.12
350 351 5.244402 TCGATAAGTAAGAGTGTTGAACCCA 59.756 40.000 0.00 0.00 0.00 4.51
351 352 5.717119 TCGATAAGTAAGAGTGTTGAACCC 58.283 41.667 0.00 0.00 0.00 4.11
352 353 7.148623 CCTTTCGATAAGTAAGAGTGTTGAACC 60.149 40.741 0.00 0.00 29.89 3.62
353 354 7.597743 TCCTTTCGATAAGTAAGAGTGTTGAAC 59.402 37.037 0.00 0.00 29.89 3.18
354 355 7.597743 GTCCTTTCGATAAGTAAGAGTGTTGAA 59.402 37.037 0.00 0.00 29.89 2.69
355 356 7.039923 AGTCCTTTCGATAAGTAAGAGTGTTGA 60.040 37.037 0.00 0.00 29.89 3.18
356 357 7.091443 AGTCCTTTCGATAAGTAAGAGTGTTG 58.909 38.462 0.00 0.00 29.89 3.33
357 358 7.229581 AGTCCTTTCGATAAGTAAGAGTGTT 57.770 36.000 0.00 0.00 29.89 3.32
358 359 6.837471 AGTCCTTTCGATAAGTAAGAGTGT 57.163 37.500 0.00 0.00 29.89 3.55
359 360 6.906143 CGTAGTCCTTTCGATAAGTAAGAGTG 59.094 42.308 0.00 0.00 29.89 3.51
360 361 6.820656 TCGTAGTCCTTTCGATAAGTAAGAGT 59.179 38.462 0.00 0.00 29.89 3.24
361 362 7.244166 TCGTAGTCCTTTCGATAAGTAAGAG 57.756 40.000 0.00 0.00 29.89 2.85
362 363 7.798596 ATCGTAGTCCTTTCGATAAGTAAGA 57.201 36.000 0.00 0.00 41.46 2.10
363 364 8.986847 TCTATCGTAGTCCTTTCGATAAGTAAG 58.013 37.037 7.65 0.00 42.90 2.34
364 365 8.893219 TCTATCGTAGTCCTTTCGATAAGTAA 57.107 34.615 7.65 0.00 42.90 2.24
365 366 9.149225 GATCTATCGTAGTCCTTTCGATAAGTA 57.851 37.037 7.65 0.00 42.90 2.24
366 367 7.119553 GGATCTATCGTAGTCCTTTCGATAAGT 59.880 40.741 7.65 1.07 42.90 2.24
367 368 7.414319 GGGATCTATCGTAGTCCTTTCGATAAG 60.414 44.444 7.65 0.00 42.90 1.73
368 369 6.373774 GGGATCTATCGTAGTCCTTTCGATAA 59.626 42.308 7.65 1.63 42.90 1.75
369 370 5.879223 GGGATCTATCGTAGTCCTTTCGATA 59.121 44.000 0.00 0.00 42.78 2.92
370 371 4.701171 GGGATCTATCGTAGTCCTTTCGAT 59.299 45.833 0.00 0.00 44.53 3.59
371 372 4.070716 GGGATCTATCGTAGTCCTTTCGA 58.929 47.826 0.00 0.00 37.96 3.71
372 373 3.190953 GGGGATCTATCGTAGTCCTTTCG 59.809 52.174 0.00 0.00 0.00 3.46
373 374 4.409187 AGGGGATCTATCGTAGTCCTTTC 58.591 47.826 0.00 0.00 0.00 2.62
374 375 4.472690 AGGGGATCTATCGTAGTCCTTT 57.527 45.455 0.00 0.00 0.00 3.11
375 376 4.353191 TGTAGGGGATCTATCGTAGTCCTT 59.647 45.833 0.00 0.00 0.00 3.36
376 377 3.915073 TGTAGGGGATCTATCGTAGTCCT 59.085 47.826 0.00 0.00 0.00 3.85
377 378 4.009002 GTGTAGGGGATCTATCGTAGTCC 58.991 52.174 0.00 0.00 0.00 3.85
378 379 4.909001 AGTGTAGGGGATCTATCGTAGTC 58.091 47.826 0.00 0.00 0.00 2.59
379 380 4.997545 AGTGTAGGGGATCTATCGTAGT 57.002 45.455 0.00 0.00 0.00 2.73
380 381 5.048643 CACAAGTGTAGGGGATCTATCGTAG 60.049 48.000 0.00 0.00 0.00 3.51
381 382 4.825634 CACAAGTGTAGGGGATCTATCGTA 59.174 45.833 0.00 0.00 0.00 3.43
382 383 3.637229 CACAAGTGTAGGGGATCTATCGT 59.363 47.826 0.00 0.00 0.00 3.73
383 384 3.005897 CCACAAGTGTAGGGGATCTATCG 59.994 52.174 0.00 0.00 0.00 2.92
384 385 3.325135 CCCACAAGTGTAGGGGATCTATC 59.675 52.174 1.36 0.00 43.57 2.08
385 386 3.318313 CCCACAAGTGTAGGGGATCTAT 58.682 50.000 1.36 0.00 43.57 1.98
386 387 2.759355 CCCACAAGTGTAGGGGATCTA 58.241 52.381 1.36 0.00 43.57 1.98
387 388 1.584724 CCCACAAGTGTAGGGGATCT 58.415 55.000 1.36 0.00 43.57 2.75
393 394 2.303022 ACTGATGACCCACAAGTGTAGG 59.697 50.000 0.00 0.00 32.88 3.18
394 395 3.329386 CACTGATGACCCACAAGTGTAG 58.671 50.000 0.00 0.00 34.50 2.74
395 396 2.549992 GCACTGATGACCCACAAGTGTA 60.550 50.000 0.00 0.00 38.71 2.90
396 397 1.815408 GCACTGATGACCCACAAGTGT 60.815 52.381 0.00 0.00 38.71 3.55
397 398 0.877071 GCACTGATGACCCACAAGTG 59.123 55.000 0.00 0.00 39.18 3.16
398 399 0.603707 CGCACTGATGACCCACAAGT 60.604 55.000 0.00 0.00 0.00 3.16
399 400 0.603707 ACGCACTGATGACCCACAAG 60.604 55.000 0.00 0.00 0.00 3.16
400 401 0.602638 GACGCACTGATGACCCACAA 60.603 55.000 0.00 0.00 0.00 3.33
401 402 1.005037 GACGCACTGATGACCCACA 60.005 57.895 0.00 0.00 0.00 4.17
402 403 2.094659 CGACGCACTGATGACCCAC 61.095 63.158 0.00 0.00 0.00 4.61
403 404 2.261361 CGACGCACTGATGACCCA 59.739 61.111 0.00 0.00 0.00 4.51
404 405 1.805945 GTCGACGCACTGATGACCC 60.806 63.158 0.00 0.00 0.00 4.46
405 406 0.666274 TTGTCGACGCACTGATGACC 60.666 55.000 11.62 0.00 0.00 4.02
406 407 0.710567 CTTGTCGACGCACTGATGAC 59.289 55.000 11.62 0.00 0.00 3.06
407 408 0.388520 CCTTGTCGACGCACTGATGA 60.389 55.000 11.62 0.00 0.00 2.92
408 409 0.388520 TCCTTGTCGACGCACTGATG 60.389 55.000 11.62 0.00 0.00 3.07
409 410 0.109086 CTCCTTGTCGACGCACTGAT 60.109 55.000 11.62 0.00 0.00 2.90
410 411 1.170290 TCTCCTTGTCGACGCACTGA 61.170 55.000 11.62 3.77 0.00 3.41
411 412 0.730834 CTCTCCTTGTCGACGCACTG 60.731 60.000 11.62 1.27 0.00 3.66
412 413 1.173444 ACTCTCCTTGTCGACGCACT 61.173 55.000 11.62 0.00 0.00 4.40
455 457 2.301583 TCTCGACCAACATCAATCACCA 59.698 45.455 0.00 0.00 0.00 4.17
461 463 1.003003 TGGCATCTCGACCAACATCAA 59.997 47.619 0.00 0.00 31.46 2.57
462 464 0.612744 TGGCATCTCGACCAACATCA 59.387 50.000 0.00 0.00 31.46 3.07
465 467 0.396435 AAGTGGCATCTCGACCAACA 59.604 50.000 0.00 0.00 37.79 3.33
478 480 0.746659 AGCTTGTCCAACAAAGTGGC 59.253 50.000 0.00 0.00 37.69 5.01
480 482 4.376340 AAAGAGCTTGTCCAACAAAGTG 57.624 40.909 0.00 0.00 37.69 3.16
481 483 4.747810 CAAAAGAGCTTGTCCAACAAAGT 58.252 39.130 0.00 0.00 37.69 2.66
541 553 7.000472 AGATCACACAAAATGAGAAGGAAGAA 59.000 34.615 0.00 0.00 31.16 2.52
709 750 7.300556 TCATCATCATGGAGGTTTTGAAAAA 57.699 32.000 0.00 0.00 0.00 1.94
712 753 7.038870 ACAAATCATCATCATGGAGGTTTTGAA 60.039 33.333 18.56 0.00 39.08 2.69
714 755 6.533723 CACAAATCATCATCATGGAGGTTTTG 59.466 38.462 13.73 13.73 40.92 2.44
715 756 6.351541 CCACAAATCATCATCATGGAGGTTTT 60.352 38.462 0.00 0.00 0.00 2.43
716 757 5.128171 CCACAAATCATCATCATGGAGGTTT 59.872 40.000 0.00 0.00 0.00 3.27
717 758 4.647853 CCACAAATCATCATCATGGAGGTT 59.352 41.667 0.00 0.00 0.00 3.50
755 796 9.965824 TTCTTTGGCAAAAACAAAAATACAAAA 57.034 22.222 14.43 0.00 37.37 2.44
757 798 9.965824 TTTTCTTTGGCAAAAACAAAAATACAA 57.034 22.222 14.43 0.00 37.37 2.41
758 799 9.617975 CTTTTCTTTGGCAAAAACAAAAATACA 57.382 25.926 14.43 0.00 37.37 2.29
759 800 9.071221 CCTTTTCTTTGGCAAAAACAAAAATAC 57.929 29.630 14.43 0.00 37.37 1.89
773 814 0.031994 TTGAGCGCCTTTTCTTTGGC 59.968 50.000 2.29 0.00 45.25 4.52
797 838 0.685097 CCACCAGTCTTCGAGGGAAA 59.315 55.000 0.00 0.00 0.00 3.13
877 1116 3.100671 CTCCTTACTGTCTAACTGGGCT 58.899 50.000 0.00 0.00 0.00 5.19
1180 1431 0.250513 GGGTGGAAGACTCGCTGATT 59.749 55.000 0.00 0.00 0.00 2.57
1181 1432 1.617947 GGGGTGGAAGACTCGCTGAT 61.618 60.000 0.00 0.00 0.00 2.90
2103 2390 3.476552 ACCACTTGATACTGTTGGTGTG 58.523 45.455 0.00 0.00 0.00 3.82
2180 2475 4.530710 TGAACTACCGTATCAAGCAACT 57.469 40.909 0.00 0.00 0.00 3.16
2373 2972 2.087501 TCTTACGATTTCAAGGCGCA 57.912 45.000 10.83 0.00 0.00 6.09
2376 2975 4.148891 CGTGTTTCTTACGATTTCAAGGC 58.851 43.478 0.00 0.00 43.82 4.35
2544 4918 5.097234 ACTTGCCTCCCTGCTTATATCTAT 58.903 41.667 0.00 0.00 0.00 1.98
2552 4926 1.130054 TCAGACTTGCCTCCCTGCTT 61.130 55.000 0.00 0.00 0.00 3.91
2573 4947 9.435688 GGTAGCAGAAATTAAATTTTTCACCAT 57.564 29.630 0.00 0.00 35.90 3.55
2581 4955 7.836842 ACGGAATGGTAGCAGAAATTAAATTT 58.163 30.769 0.00 0.00 34.64 1.82
2582 4956 7.404671 ACGGAATGGTAGCAGAAATTAAATT 57.595 32.000 0.00 0.00 0.00 1.82
2583 4957 7.404671 AACGGAATGGTAGCAGAAATTAAAT 57.595 32.000 0.00 0.00 0.00 1.40
2587 4961 6.183360 CCATAAACGGAATGGTAGCAGAAATT 60.183 38.462 0.00 0.00 39.30 1.82
2588 4962 5.299279 CCATAAACGGAATGGTAGCAGAAAT 59.701 40.000 0.00 0.00 39.30 2.17
2658 5036 2.111384 AGTCGGATTACACAGCCAGAT 58.889 47.619 0.00 0.00 0.00 2.90
2749 5128 8.781951 ACATAGTTCCATAGGGATAATATTGGG 58.218 37.037 0.00 0.00 44.48 4.12
2750 5129 9.838339 GACATAGTTCCATAGGGATAATATTGG 57.162 37.037 0.00 0.00 44.48 3.16
2760 5139 5.600484 ACTTCTGAGACATAGTTCCATAGGG 59.400 44.000 0.00 0.00 0.00 3.53
2773 5152 5.386060 TCCTTCAAGACTACTTCTGAGACA 58.614 41.667 0.00 0.00 33.46 3.41
2776 5155 9.528018 GAATAATCCTTCAAGACTACTTCTGAG 57.472 37.037 0.00 0.00 33.46 3.35
2777 5156 8.478877 GGAATAATCCTTCAAGACTACTTCTGA 58.521 37.037 0.00 0.00 42.93 3.27
2815 5194 6.970613 GGGAAATACTTGGTAAAATGCTTACG 59.029 38.462 0.00 0.00 0.00 3.18
2846 5225 6.759827 GCGAGTAAAACAATCCATAGGTCTTA 59.240 38.462 0.00 0.00 0.00 2.10
2866 5245 5.133941 TCTAGATATTCAGGAGTTGCGAGT 58.866 41.667 0.00 0.00 0.00 4.18
2867 5246 5.240623 ACTCTAGATATTCAGGAGTTGCGAG 59.759 44.000 0.00 0.00 34.13 5.03
2888 5268 4.465016 CCAATATACGCGTACTCAGACTC 58.535 47.826 23.19 0.00 0.00 3.36
2952 5925 0.949397 ACTCATGCTGTGCACAGTTG 59.051 50.000 39.30 34.29 43.04 3.16
2953 5926 2.549064 TACTCATGCTGTGCACAGTT 57.451 45.000 39.30 27.58 43.04 3.16
2954 5927 2.775911 ATACTCATGCTGTGCACAGT 57.224 45.000 39.30 25.67 43.04 3.55
2973 5946 7.891561 ACGATTTCAAGGTGATTCCAAAATAA 58.108 30.769 0.00 0.00 39.02 1.40
3101 6074 9.971922 CAAAAGAAATGAACAAGATAACTCCTT 57.028 29.630 0.00 0.00 0.00 3.36
3182 6156 8.784043 AGAACTTAAGAGCAATAAACGAAATGT 58.216 29.630 10.09 0.00 0.00 2.71
3236 6212 9.968870 GTACTAGGACAATATGGAACTAAAGAG 57.031 37.037 0.00 0.00 0.00 2.85
3243 6219 8.989980 GCATAAAGTACTAGGACAATATGGAAC 58.010 37.037 22.09 9.61 0.00 3.62
3245 6221 8.492415 AGCATAAAGTACTAGGACAATATGGA 57.508 34.615 22.09 0.00 0.00 3.41
3349 6493 8.671921 CATTTTGCTCCATATGTAGTCCATATC 58.328 37.037 1.24 0.00 43.46 1.63
3406 6550 5.861787 TCAATATGGACTACATACGAATGCG 59.138 40.000 0.00 0.00 44.41 4.73
3486 6635 6.391227 AAGTAAAACAATCCACAGGTCTTG 57.609 37.500 0.00 0.00 0.00 3.02
3690 6864 0.534877 TGTCCAGTCGCAGCAACAAT 60.535 50.000 0.00 0.00 0.00 2.71
3833 7007 2.073252 TGCTACCTCATCTGACGGAT 57.927 50.000 0.00 0.00 34.51 4.18
4020 7195 6.159988 AGTACTAGCACATTCACTTCACTTC 58.840 40.000 0.00 0.00 0.00 3.01
4045 7220 2.362717 GGACGGTCAGATCCTCCTTAAG 59.637 54.545 10.76 0.00 31.75 1.85
4048 7223 0.336737 AGGACGGTCAGATCCTCCTT 59.663 55.000 10.76 0.00 41.83 3.36
4050 7225 1.196012 AAAGGACGGTCAGATCCTCC 58.804 55.000 10.76 0.00 44.97 4.30
4061 7247 5.059404 ACAATATGCAAAGAAAAGGACGG 57.941 39.130 0.00 0.00 0.00 4.79
4062 7248 6.607689 TGTACAATATGCAAAGAAAAGGACG 58.392 36.000 0.00 0.00 0.00 4.79
4077 7263 9.887406 CAAAAGTAACTCCGTTTTGTACAATAT 57.113 29.630 9.56 0.00 36.72 1.28
4091 7356 7.739498 TTGATACAGAACCAAAAGTAACTCC 57.261 36.000 0.00 0.00 0.00 3.85
4164 7429 4.397417 AGAGGAAGCATGTTTAGTGAATGC 59.603 41.667 0.00 0.00 45.62 3.56
4165 7430 5.413833 ACAGAGGAAGCATGTTTAGTGAATG 59.586 40.000 0.00 0.00 0.00 2.67
4166 7431 5.564550 ACAGAGGAAGCATGTTTAGTGAAT 58.435 37.500 0.00 0.00 0.00 2.57
4167 7432 4.973168 ACAGAGGAAGCATGTTTAGTGAA 58.027 39.130 0.00 0.00 0.00 3.18
4168 7433 4.623932 ACAGAGGAAGCATGTTTAGTGA 57.376 40.909 0.00 0.00 0.00 3.41
4169 7434 6.801539 TTTACAGAGGAAGCATGTTTAGTG 57.198 37.500 0.00 0.00 0.00 2.74
4170 7435 7.168219 TCATTTACAGAGGAAGCATGTTTAGT 58.832 34.615 0.00 0.00 0.00 2.24
4171 7436 7.615582 TCATTTACAGAGGAAGCATGTTTAG 57.384 36.000 0.00 0.00 0.00 1.85
4195 7460 5.821470 AGAATGAGCACGATGATGAATTCTT 59.179 36.000 7.05 0.00 30.91 2.52
4224 7489 1.599542 GATGAATGGCCGCTCAAGTAC 59.400 52.381 10.37 0.00 0.00 2.73
4229 7494 0.180878 TGATGATGAATGGCCGCTCA 59.819 50.000 8.88 8.88 0.00 4.26
4232 7497 0.590195 GAGTGATGATGAATGGCCGC 59.410 55.000 0.00 0.00 0.00 6.53
4292 7557 3.119566 GGTCGTGTAAGAGAAGTGGTAGG 60.120 52.174 0.00 0.00 0.00 3.18
4318 7642 4.402474 GTGTAGCTTTAGGGCCATTTTGAT 59.598 41.667 6.18 0.00 0.00 2.57
4362 7687 1.550072 TCTATTTTGCAAGGCCTTGGC 59.450 47.619 39.51 31.39 40.74 4.52
4418 7796 5.935789 TGAACTGATAAGGGTAACTTTTCGG 59.064 40.000 0.00 0.00 44.37 4.30
4428 7806 8.383175 TGTCTTAATTTCTGAACTGATAAGGGT 58.617 33.333 0.00 0.00 0.00 4.34
4436 7814 6.727824 ACCGATGTCTTAATTTCTGAACTG 57.272 37.500 0.00 0.00 0.00 3.16
4440 7818 7.258441 CAGACTACCGATGTCTTAATTTCTGA 58.742 38.462 0.00 0.00 42.21 3.27
4446 7824 5.934402 AACCAGACTACCGATGTCTTAAT 57.066 39.130 0.00 0.00 42.21 1.40
4463 7856 7.038659 AGAATTTATCGAGTCTCTGAAACCAG 58.961 38.462 0.00 0.00 0.00 4.00
4478 7871 7.909267 TGTGAGAGTATTGCAAGAATTTATCG 58.091 34.615 4.94 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.