Multiple sequence alignment - TraesCS6B01G094900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G094900 chr6B 100.000 3104 0 0 1 3104 71225690 71228793 0.000000e+00 5733.0
1 TraesCS6B01G094900 chr6B 86.256 1397 118 35 905 2268 71197836 71199191 0.000000e+00 1448.0
2 TraesCS6B01G094900 chr6B 82.974 1298 133 40 905 2151 71262071 71263331 0.000000e+00 1092.0
3 TraesCS6B01G094900 chr6B 84.615 78 11 1 2586 2662 71263889 71263966 3.320000e-10 76.8
4 TraesCS6B01G094900 chr6D 95.396 1325 48 6 803 2119 34501887 34503206 0.000000e+00 2097.0
5 TraesCS6B01G094900 chr6D 87.311 1324 114 21 978 2268 34430690 34431992 0.000000e+00 1465.0
6 TraesCS6B01G094900 chr6D 90.802 761 43 12 1 753 34500952 34501693 0.000000e+00 992.0
7 TraesCS6B01G094900 chr6D 80.849 1295 160 40 905 2151 34508035 34509289 0.000000e+00 937.0
8 TraesCS6B01G094900 chr6D 88.110 656 49 16 2157 2785 34503207 34503860 0.000000e+00 752.0
9 TraesCS6B01G094900 chr6D 89.535 86 9 0 2575 2660 34509539 34509624 3.270000e-20 110.0
10 TraesCS6B01G094900 chr6A 95.105 1328 52 6 803 2119 38723536 38724861 0.000000e+00 2080.0
11 TraesCS6B01G094900 chr6A 86.347 1399 119 32 905 2269 38684509 38685869 0.000000e+00 1459.0
12 TraesCS6B01G094900 chr6A 83.436 1298 127 41 905 2151 38741723 38742983 0.000000e+00 1125.0
13 TraesCS6B01G094900 chr6A 92.482 705 46 3 1 698 38719335 38720039 0.000000e+00 1002.0
14 TraesCS6B01G094900 chr6A 83.399 506 54 18 2298 2785 38724963 38725456 2.840000e-120 442.0
15 TraesCS6B01G094900 chr6A 92.000 50 1 3 2560 2609 38743195 38743241 2.000000e-07 67.6
16 TraesCS6B01G094900 chr7B 80.359 835 96 28 997 1817 592701588 592700808 3.470000e-159 571.0
17 TraesCS6B01G094900 chr7B 79.506 810 105 31 893 1683 592777452 592776685 1.280000e-143 520.0
18 TraesCS6B01G094900 chr7B 97.297 37 1 0 1763 1799 592776626 592776590 2.580000e-06 63.9
19 TraesCS6B01G094900 chr7A 80.286 700 91 23 997 1683 634455099 634454434 4.650000e-133 484.0
20 TraesCS6B01G094900 chr7A 79.274 661 116 14 23 670 210117136 210116484 2.840000e-120 442.0
21 TraesCS6B01G094900 chr2A 79.666 659 115 13 23 670 196050070 196049420 1.010000e-124 457.0
22 TraesCS6B01G094900 chr2B 79.425 661 115 14 23 670 172273012 172273664 6.110000e-122 448.0
23 TraesCS6B01G094900 chr5B 79.123 661 117 14 23 670 652324725 652325377 1.320000e-118 436.0
24 TraesCS6B01G094900 chr5A 79.123 661 117 14 23 670 92668035 92668687 1.320000e-118 436.0
25 TraesCS6B01G094900 chr1A 78.485 660 121 16 23 670 39982564 39981914 2.230000e-111 412.0
26 TraesCS6B01G094900 chr2D 79.928 558 98 11 23 570 428679866 428679313 6.240000e-107 398.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G094900 chr6B 71225690 71228793 3103 False 5733.000000 5733 100.000000 1 3104 1 chr6B.!!$F2 3103
1 TraesCS6B01G094900 chr6B 71197836 71199191 1355 False 1448.000000 1448 86.256000 905 2268 1 chr6B.!!$F1 1363
2 TraesCS6B01G094900 chr6B 71262071 71263966 1895 False 584.400000 1092 83.794500 905 2662 2 chr6B.!!$F3 1757
3 TraesCS6B01G094900 chr6D 34430690 34431992 1302 False 1465.000000 1465 87.311000 978 2268 1 chr6D.!!$F1 1290
4 TraesCS6B01G094900 chr6D 34500952 34503860 2908 False 1280.333333 2097 91.436000 1 2785 3 chr6D.!!$F2 2784
5 TraesCS6B01G094900 chr6D 34508035 34509624 1589 False 523.500000 937 85.192000 905 2660 2 chr6D.!!$F3 1755
6 TraesCS6B01G094900 chr6A 38684509 38685869 1360 False 1459.000000 1459 86.347000 905 2269 1 chr6A.!!$F1 1364
7 TraesCS6B01G094900 chr6A 38719335 38725456 6121 False 1174.666667 2080 90.328667 1 2785 3 chr6A.!!$F2 2784
8 TraesCS6B01G094900 chr6A 38741723 38743241 1518 False 596.300000 1125 87.718000 905 2609 2 chr6A.!!$F3 1704
9 TraesCS6B01G094900 chr7B 592700808 592701588 780 True 571.000000 571 80.359000 997 1817 1 chr7B.!!$R1 820
10 TraesCS6B01G094900 chr7B 592776590 592777452 862 True 291.950000 520 88.401500 893 1799 2 chr7B.!!$R2 906
11 TraesCS6B01G094900 chr7A 634454434 634455099 665 True 484.000000 484 80.286000 997 1683 1 chr7A.!!$R2 686
12 TraesCS6B01G094900 chr7A 210116484 210117136 652 True 442.000000 442 79.274000 23 670 1 chr7A.!!$R1 647
13 TraesCS6B01G094900 chr2A 196049420 196050070 650 True 457.000000 457 79.666000 23 670 1 chr2A.!!$R1 647
14 TraesCS6B01G094900 chr2B 172273012 172273664 652 False 448.000000 448 79.425000 23 670 1 chr2B.!!$F1 647
15 TraesCS6B01G094900 chr5B 652324725 652325377 652 False 436.000000 436 79.123000 23 670 1 chr5B.!!$F1 647
16 TraesCS6B01G094900 chr5A 92668035 92668687 652 False 436.000000 436 79.123000 23 670 1 chr5A.!!$F1 647
17 TraesCS6B01G094900 chr1A 39981914 39982564 650 True 412.000000 412 78.485000 23 670 1 chr1A.!!$R1 647
18 TraesCS6B01G094900 chr2D 428679313 428679866 553 True 398.000000 398 79.928000 23 570 1 chr2D.!!$R1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 103 0.254178 GATTGAGGGCAGCCAAGAGA 59.746 55.0 15.19 0.0 0.00 3.10 F
671 684 0.324943 GCCTGCAAAGGTCTGGAGTA 59.675 55.0 0.00 0.0 33.19 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 5628 0.182061 ATCGGTACCTAGCAGACGGA 59.818 55.0 10.90 0.0 0.00 4.69 R
2667 6690 0.606604 TCGGAGTGGCCTACAGTTTC 59.393 55.0 3.32 0.0 31.34 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 103 0.254178 GATTGAGGGCAGCCAAGAGA 59.746 55.000 15.19 0.00 0.00 3.10
103 105 0.700564 TTGAGGGCAGCCAAGAGAAT 59.299 50.000 15.19 0.00 0.00 2.40
216 218 3.197766 TCCAGAATTGCCTTACACGAGAT 59.802 43.478 0.00 0.00 0.00 2.75
268 271 8.739039 CACAACATTTATGGAAAGTATGAGGAA 58.261 33.333 0.00 0.00 0.00 3.36
311 314 4.310769 GTTCAAAGCTGAAGTAGAGAGCA 58.689 43.478 0.00 0.00 42.27 4.26
314 317 1.930251 AGCTGAAGTAGAGAGCACCA 58.070 50.000 0.00 0.00 35.03 4.17
334 339 5.971202 CACCACATGAAAGTGTTGTAGAAAC 59.029 40.000 0.00 0.00 37.82 2.78
337 342 6.201517 CACATGAAAGTGTTGTAGAAACTGG 58.798 40.000 0.00 0.00 34.83 4.00
352 358 2.031012 TGGCAGGCACTCTGTTCG 59.969 61.111 0.00 0.00 45.08 3.95
371 382 3.728845 TCGAGTTCAAGGGAAAGAGTTG 58.271 45.455 0.00 0.00 34.13 3.16
476 487 5.620738 ACTGTGGATGCTATGACACTTAT 57.379 39.130 0.00 0.00 35.02 1.73
671 684 0.324943 GCCTGCAAAGGTCTGGAGTA 59.675 55.000 0.00 0.00 33.19 2.59
690 703 8.001881 TGGAGTATGAGACTTGACTAAATCTC 57.998 38.462 0.00 0.00 39.06 2.75
753 820 2.034685 GCACCTTGGTTTGACTTCTTCC 59.965 50.000 0.00 0.00 0.00 3.46
769 3736 1.855360 CTTCCGCTAGAAATCGCTGAC 59.145 52.381 0.00 0.00 32.88 3.51
792 3759 2.945008 GACGGCAAAGAATGATCCATCA 59.055 45.455 0.00 0.00 41.70 3.07
794 3761 2.292569 CGGCAAAGAATGATCCATCAGG 59.707 50.000 0.00 0.00 40.64 3.86
819 4262 2.650608 AGCGAAATTTTCAAGACGTGC 58.349 42.857 9.66 3.01 0.00 5.34
840 4283 0.693049 ATGGGGACTTGTGGTGTCTC 59.307 55.000 0.00 0.00 35.04 3.36
844 4287 2.489073 GGGGACTTGTGGTGTCTCATTT 60.489 50.000 0.00 0.00 36.69 2.32
845 4288 2.554032 GGGACTTGTGGTGTCTCATTTG 59.446 50.000 0.00 0.00 35.18 2.32
864 4307 4.712191 TTGCATTGCAATTCGTTTTCAG 57.288 36.364 19.77 0.00 43.99 3.02
900 4344 0.596082 AATGGGCGTCGTCAAAAAGG 59.404 50.000 0.00 0.00 0.00 3.11
950 4399 3.314693 ACTCACCACACTCCTCCTTTAA 58.685 45.455 0.00 0.00 0.00 1.52
1602 5091 1.984570 CGGGAAGGACCTGCTGAGA 60.985 63.158 0.00 0.00 38.29 3.27
2070 5628 2.442272 ACCGGCGCTATCCACTCT 60.442 61.111 7.64 0.00 0.00 3.24
2105 5663 1.081892 CGATGGAAGCACAGGTGAAG 58.918 55.000 3.10 0.00 0.00 3.02
2106 5664 1.338105 CGATGGAAGCACAGGTGAAGA 60.338 52.381 3.10 0.00 0.00 2.87
2107 5665 2.354259 GATGGAAGCACAGGTGAAGAG 58.646 52.381 3.10 0.00 0.00 2.85
2123 5681 0.674895 AGAGCGGTCATCCTTTGCAC 60.675 55.000 18.15 0.00 0.00 4.57
2124 5682 1.970917 GAGCGGTCATCCTTTGCACG 61.971 60.000 10.30 0.00 0.00 5.34
2125 5683 2.032634 GCGGTCATCCTTTGCACGA 61.033 57.895 0.00 0.00 0.00 4.35
2126 5684 1.369091 GCGGTCATCCTTTGCACGAT 61.369 55.000 0.00 0.00 0.00 3.73
2127 5685 0.374758 CGGTCATCCTTTGCACGATG 59.625 55.000 10.13 10.13 37.76 3.84
2128 5686 0.734889 GGTCATCCTTTGCACGATGG 59.265 55.000 14.48 1.76 37.16 3.51
2129 5687 1.678728 GGTCATCCTTTGCACGATGGA 60.679 52.381 14.48 6.62 37.16 3.41
2130 5688 2.083774 GTCATCCTTTGCACGATGGAA 58.916 47.619 14.48 0.00 37.16 3.53
2131 5689 2.684881 GTCATCCTTTGCACGATGGAAT 59.315 45.455 14.48 0.00 37.16 3.01
2132 5690 3.129287 GTCATCCTTTGCACGATGGAATT 59.871 43.478 14.48 0.00 37.16 2.17
2133 5691 3.378112 TCATCCTTTGCACGATGGAATTC 59.622 43.478 14.48 0.00 37.16 2.17
2223 6013 3.993081 CACTGAACTGTCTCTGTTCATCC 59.007 47.826 17.54 0.00 45.85 3.51
2234 6028 3.603532 TCTGTTCATCCATCACAAGAGC 58.396 45.455 0.00 0.00 0.00 4.09
2270 6111 4.206375 TCTTCTCATTTGCACTTCACCAA 58.794 39.130 0.00 0.00 0.00 3.67
2272 6113 4.305989 TCTCATTTGCACTTCACCAAAC 57.694 40.909 0.00 0.00 34.18 2.93
2274 6115 4.402155 TCTCATTTGCACTTCACCAAACTT 59.598 37.500 0.00 0.00 34.18 2.66
2275 6116 5.083533 TCATTTGCACTTCACCAAACTTT 57.916 34.783 0.00 0.00 34.18 2.66
2277 6118 5.350914 TCATTTGCACTTCACCAAACTTTTG 59.649 36.000 0.00 0.00 34.18 2.44
2278 6119 2.615869 TGCACTTCACCAAACTTTTGC 58.384 42.857 0.00 0.00 36.86 3.68
2280 6121 2.676463 GCACTTCACCAAACTTTTGCCA 60.676 45.455 0.00 0.00 36.86 4.92
2281 6122 3.189285 CACTTCACCAAACTTTTGCCAG 58.811 45.455 0.00 0.00 36.86 4.85
2282 6123 2.831526 ACTTCACCAAACTTTTGCCAGT 59.168 40.909 0.00 0.00 36.86 4.00
2284 6125 3.244033 TCACCAAACTTTTGCCAGTTG 57.756 42.857 0.00 0.00 37.07 3.16
2286 6127 3.259374 TCACCAAACTTTTGCCAGTTGAA 59.741 39.130 0.00 0.00 37.07 2.69
2287 6128 3.618150 CACCAAACTTTTGCCAGTTGAAG 59.382 43.478 0.00 0.00 37.07 3.02
2288 6129 3.513515 ACCAAACTTTTGCCAGTTGAAGA 59.486 39.130 0.00 0.00 37.07 2.87
2290 6131 4.934602 CCAAACTTTTGCCAGTTGAAGAAA 59.065 37.500 0.00 0.00 37.07 2.52
2291 6132 5.411053 CCAAACTTTTGCCAGTTGAAGAAAA 59.589 36.000 0.00 0.00 37.07 2.29
2292 6133 6.093909 CCAAACTTTTGCCAGTTGAAGAAAAT 59.906 34.615 0.00 0.00 37.07 1.82
2293 6134 6.667007 AACTTTTGCCAGTTGAAGAAAATG 57.333 33.333 0.00 0.00 35.57 2.32
2294 6135 5.733676 ACTTTTGCCAGTTGAAGAAAATGT 58.266 33.333 0.00 0.00 31.85 2.71
2295 6136 5.581874 ACTTTTGCCAGTTGAAGAAAATGTG 59.418 36.000 0.00 0.00 31.85 3.21
2296 6137 3.096489 TGCCAGTTGAAGAAAATGTGC 57.904 42.857 0.00 0.00 31.85 4.57
2297 6138 2.694628 TGCCAGTTGAAGAAAATGTGCT 59.305 40.909 0.00 0.00 33.77 4.40
2298 6139 3.888323 TGCCAGTTGAAGAAAATGTGCTA 59.112 39.130 0.00 0.00 33.77 3.49
2299 6140 4.229876 GCCAGTTGAAGAAAATGTGCTAC 58.770 43.478 0.00 0.00 31.85 3.58
2300 6141 4.022849 GCCAGTTGAAGAAAATGTGCTACT 60.023 41.667 0.00 0.00 31.85 2.57
2301 6142 5.455392 CCAGTTGAAGAAAATGTGCTACTG 58.545 41.667 0.00 0.00 31.85 2.74
2350 6191 5.824904 ATGTTGCTCATCCACTTTATGAC 57.175 39.130 0.00 0.00 29.76 3.06
2358 6204 5.245531 TCATCCACTTTATGACAACAGTCC 58.754 41.667 0.00 0.00 0.00 3.85
2384 6230 3.562973 AGTGTCATTTGTGCAGAACAGAG 59.437 43.478 0.00 0.00 40.74 3.35
2404 6250 5.477291 CAGAGGAGTTAGAGTTGTTGGAGTA 59.523 44.000 0.00 0.00 0.00 2.59
2405 6251 6.153680 CAGAGGAGTTAGAGTTGTTGGAGTAT 59.846 42.308 0.00 0.00 0.00 2.12
2413 6266 9.880064 GTTAGAGTTGTTGGAGTATTTTTCTTC 57.120 33.333 0.00 0.00 0.00 2.87
2415 6268 8.753497 AGAGTTGTTGGAGTATTTTTCTTCTT 57.247 30.769 0.00 0.00 0.00 2.52
2439 6292 9.778993 CTTCGAATATGGGCAAGAATAAATATG 57.221 33.333 0.00 0.00 0.00 1.78
2440 6293 8.279970 TCGAATATGGGCAAGAATAAATATGG 57.720 34.615 0.00 0.00 0.00 2.74
2441 6294 8.106462 TCGAATATGGGCAAGAATAAATATGGA 58.894 33.333 0.00 0.00 0.00 3.41
2442 6295 8.184192 CGAATATGGGCAAGAATAAATATGGAC 58.816 37.037 0.00 0.00 0.00 4.02
2443 6296 5.964958 ATGGGCAAGAATAAATATGGACG 57.035 39.130 0.00 0.00 0.00 4.79
2444 6297 5.042463 TGGGCAAGAATAAATATGGACGA 57.958 39.130 0.00 0.00 0.00 4.20
2454 6309 9.482627 AGAATAAATATGGACGACTCATCTTTC 57.517 33.333 0.00 0.00 0.00 2.62
2497 6352 4.653555 CTTGAAAAGGCAACGGGC 57.346 55.556 0.00 0.00 41.27 6.13
2524 6381 3.561313 GCCCACCTGAACTCAATTCCTTA 60.561 47.826 0.00 0.00 36.36 2.69
2542 6399 8.426489 AATTCCTTAATTATCATGCACAAGCAT 58.574 29.630 0.00 0.00 46.49 3.79
2614 6636 5.643379 ACAATTGCACCGTTTCTTCATAT 57.357 34.783 5.05 0.00 0.00 1.78
2677 6700 6.483307 TCTGAAAACTGTCATGAAACTGTAGG 59.517 38.462 0.00 0.00 31.91 3.18
2679 6702 3.059352 ACTGTCATGAAACTGTAGGCC 57.941 47.619 0.00 0.00 30.58 5.19
2686 6709 0.606604 GAAACTGTAGGCCACTCCGA 59.393 55.000 5.01 0.00 40.77 4.55
2687 6710 1.001633 GAAACTGTAGGCCACTCCGAA 59.998 52.381 5.01 0.00 40.77 4.30
2688 6711 0.608640 AACTGTAGGCCACTCCGAAG 59.391 55.000 5.01 0.00 40.77 3.79
2689 6712 0.542232 ACTGTAGGCCACTCCGAAGT 60.542 55.000 5.01 0.00 40.77 3.01
2698 6721 3.383162 ACTCCGAAGTGGGATCTGT 57.617 52.632 0.00 0.00 38.76 3.41
2699 6722 1.187087 ACTCCGAAGTGGGATCTGTC 58.813 55.000 0.00 0.00 38.76 3.51
2700 6723 1.272760 ACTCCGAAGTGGGATCTGTCT 60.273 52.381 0.00 0.00 38.76 3.41
2702 6725 1.186200 CCGAAGTGGGATCTGTCTGA 58.814 55.000 0.00 0.00 0.00 3.27
2703 6726 1.759445 CCGAAGTGGGATCTGTCTGAT 59.241 52.381 0.00 0.00 38.27 2.90
2704 6727 2.959030 CCGAAGTGGGATCTGTCTGATA 59.041 50.000 0.00 0.00 35.14 2.15
2705 6728 3.005261 CCGAAGTGGGATCTGTCTGATAG 59.995 52.174 0.00 0.00 35.14 2.08
2714 6748 4.808364 GGATCTGTCTGATAGTTTCTGCAC 59.192 45.833 1.23 0.00 35.14 4.57
2732 6766 6.591935 TCTGCACCAATAATCTAAACCTAGG 58.408 40.000 7.41 7.41 0.00 3.02
2739 6773 8.053355 ACCAATAATCTAAACCTAGGGACAAAG 58.947 37.037 14.81 3.26 0.00 2.77
2758 6792 4.347360 AAGTGGTTACAGACAGGGTTAC 57.653 45.455 0.00 0.00 0.00 2.50
2775 6809 1.111116 TACGGGCTAATCCTCCACCG 61.111 60.000 0.00 0.00 46.16 4.94
2777 6811 1.446366 GGGCTAATCCTCCACCGAC 59.554 63.158 0.00 0.00 34.39 4.79
2785 6819 1.382695 CCTCCACCGACCCCACTAT 60.383 63.158 0.00 0.00 0.00 2.12
2786 6820 1.400530 CCTCCACCGACCCCACTATC 61.401 65.000 0.00 0.00 0.00 2.08
2787 6821 0.686441 CTCCACCGACCCCACTATCA 60.686 60.000 0.00 0.00 0.00 2.15
2788 6822 0.974010 TCCACCGACCCCACTATCAC 60.974 60.000 0.00 0.00 0.00 3.06
2789 6823 1.261938 CCACCGACCCCACTATCACA 61.262 60.000 0.00 0.00 0.00 3.58
2790 6824 0.611200 CACCGACCCCACTATCACAA 59.389 55.000 0.00 0.00 0.00 3.33
2791 6825 1.209504 CACCGACCCCACTATCACAAT 59.790 52.381 0.00 0.00 0.00 2.71
2792 6826 1.209504 ACCGACCCCACTATCACAATG 59.790 52.381 0.00 0.00 0.00 2.82
2793 6827 1.484653 CCGACCCCACTATCACAATGA 59.515 52.381 0.00 0.00 0.00 2.57
2794 6828 2.093181 CCGACCCCACTATCACAATGAA 60.093 50.000 0.00 0.00 0.00 2.57
2795 6829 3.605634 CGACCCCACTATCACAATGAAA 58.394 45.455 0.00 0.00 0.00 2.69
2796 6830 3.623060 CGACCCCACTATCACAATGAAAG 59.377 47.826 0.00 0.00 0.00 2.62
2797 6831 4.589908 GACCCCACTATCACAATGAAAGT 58.410 43.478 0.00 0.00 0.00 2.66
2798 6832 5.625886 CGACCCCACTATCACAATGAAAGTA 60.626 44.000 0.00 0.00 0.00 2.24
2799 6833 6.327386 ACCCCACTATCACAATGAAAGTAT 57.673 37.500 0.00 0.00 0.00 2.12
2800 6834 6.357367 ACCCCACTATCACAATGAAAGTATC 58.643 40.000 0.00 0.00 0.00 2.24
2801 6835 6.069673 ACCCCACTATCACAATGAAAGTATCA 60.070 38.462 0.00 0.00 43.67 2.15
2823 6857 8.899427 ATCATAGGTCATACTATTATGCATGC 57.101 34.615 11.82 11.82 35.86 4.06
2824 6858 7.275183 TCATAGGTCATACTATTATGCATGCC 58.725 38.462 16.68 0.00 35.86 4.40
2825 6859 5.503634 AGGTCATACTATTATGCATGCCA 57.496 39.130 16.68 3.52 35.86 4.92
2826 6860 5.879763 AGGTCATACTATTATGCATGCCAA 58.120 37.500 16.68 9.84 35.86 4.52
2827 6861 5.707298 AGGTCATACTATTATGCATGCCAAC 59.293 40.000 16.68 0.00 35.86 3.77
2828 6862 5.707298 GGTCATACTATTATGCATGCCAACT 59.293 40.000 16.68 0.00 35.86 3.16
2829 6863 6.878923 GGTCATACTATTATGCATGCCAACTA 59.121 38.462 16.68 0.00 35.86 2.24
2830 6864 7.148407 GGTCATACTATTATGCATGCCAACTAC 60.148 40.741 16.68 0.00 35.86 2.73
2831 6865 6.589907 TCATACTATTATGCATGCCAACTACG 59.410 38.462 16.68 0.77 35.86 3.51
2832 6866 3.498397 ACTATTATGCATGCCAACTACGC 59.502 43.478 16.68 0.00 0.00 4.42
2833 6867 1.743996 TTATGCATGCCAACTACGCA 58.256 45.000 16.68 0.00 41.28 5.24
2835 6869 1.105457 ATGCATGCCAACTACGCATT 58.895 45.000 16.68 0.00 44.48 3.56
2836 6870 0.451383 TGCATGCCAACTACGCATTC 59.549 50.000 16.68 0.00 44.48 2.67
2837 6871 0.734889 GCATGCCAACTACGCATTCT 59.265 50.000 6.36 0.00 44.48 2.40
2838 6872 1.133025 GCATGCCAACTACGCATTCTT 59.867 47.619 6.36 0.00 44.48 2.52
2839 6873 2.789208 CATGCCAACTACGCATTCTTG 58.211 47.619 0.00 0.00 44.48 3.02
2840 6874 0.521291 TGCCAACTACGCATTCTTGC 59.479 50.000 0.00 0.00 45.78 4.01
2841 6875 3.201225 ATGCCAACTACGCATTCTTGCT 61.201 45.455 0.00 0.00 44.48 3.91
2842 6876 5.272511 ATGCCAACTACGCATTCTTGCTG 62.273 47.826 0.00 0.00 44.48 4.41
2864 6898 7.601073 CTGAGATAGCACACAATAAAACAGA 57.399 36.000 0.00 0.00 0.00 3.41
2865 6899 7.977789 TGAGATAGCACACAATAAAACAGAA 57.022 32.000 0.00 0.00 0.00 3.02
2866 6900 8.389779 TGAGATAGCACACAATAAAACAGAAA 57.610 30.769 0.00 0.00 0.00 2.52
2867 6901 9.013229 TGAGATAGCACACAATAAAACAGAAAT 57.987 29.630 0.00 0.00 0.00 2.17
2868 6902 9.846248 GAGATAGCACACAATAAAACAGAAATT 57.154 29.630 0.00 0.00 0.00 1.82
2873 6907 8.299570 AGCACACAATAAAACAGAAATTAGAGG 58.700 33.333 0.00 0.00 0.00 3.69
2874 6908 7.542130 GCACACAATAAAACAGAAATTAGAGGG 59.458 37.037 0.00 0.00 0.00 4.30
2875 6909 8.576442 CACACAATAAAACAGAAATTAGAGGGT 58.424 33.333 0.00 0.00 0.00 4.34
2876 6910 9.143155 ACACAATAAAACAGAAATTAGAGGGTT 57.857 29.630 0.00 0.00 0.00 4.11
2877 6911 9.410556 CACAATAAAACAGAAATTAGAGGGTTG 57.589 33.333 0.00 0.00 0.00 3.77
2878 6912 9.362151 ACAATAAAACAGAAATTAGAGGGTTGA 57.638 29.630 0.00 0.00 0.00 3.18
2879 6913 9.846248 CAATAAAACAGAAATTAGAGGGTTGAG 57.154 33.333 0.00 0.00 0.00 3.02
2880 6914 9.588096 AATAAAACAGAAATTAGAGGGTTGAGT 57.412 29.630 0.00 0.00 0.00 3.41
2883 6917 8.794335 AAACAGAAATTAGAGGGTTGAGTATC 57.206 34.615 0.00 0.00 0.00 2.24
2918 6952 8.688151 AGGATACCGTATCATATTAAGAGAAGC 58.312 37.037 18.23 0.00 36.91 3.86
2919 6953 8.467598 GGATACCGTATCATATTAAGAGAAGCA 58.532 37.037 18.23 0.00 36.91 3.91
2920 6954 9.509855 GATACCGTATCATATTAAGAGAAGCAG 57.490 37.037 12.83 0.00 35.28 4.24
2921 6955 6.159988 ACCGTATCATATTAAGAGAAGCAGC 58.840 40.000 0.00 0.00 0.00 5.25
2922 6956 6.015010 ACCGTATCATATTAAGAGAAGCAGCT 60.015 38.462 0.00 0.00 0.00 4.24
2923 6957 7.176865 ACCGTATCATATTAAGAGAAGCAGCTA 59.823 37.037 0.00 0.00 0.00 3.32
2924 6958 8.029522 CCGTATCATATTAAGAGAAGCAGCTAA 58.970 37.037 0.00 0.00 0.00 3.09
2925 6959 9.411801 CGTATCATATTAAGAGAAGCAGCTAAA 57.588 33.333 0.00 0.00 0.00 1.85
2927 6961 8.845413 ATCATATTAAGAGAAGCAGCTAAAGG 57.155 34.615 0.00 0.00 0.00 3.11
2928 6962 7.796054 TCATATTAAGAGAAGCAGCTAAAGGT 58.204 34.615 0.00 0.00 0.00 3.50
2929 6963 8.924303 TCATATTAAGAGAAGCAGCTAAAGGTA 58.076 33.333 0.00 0.00 0.00 3.08
2930 6964 9.547753 CATATTAAGAGAAGCAGCTAAAGGTAA 57.452 33.333 0.00 0.00 0.00 2.85
2933 6967 6.993786 AAGAGAAGCAGCTAAAGGTAAATC 57.006 37.500 0.00 0.00 0.00 2.17
2934 6968 5.112686 AGAGAAGCAGCTAAAGGTAAATCG 58.887 41.667 0.00 0.00 0.00 3.34
2935 6969 5.086104 AGAAGCAGCTAAAGGTAAATCGA 57.914 39.130 0.00 0.00 0.00 3.59
2936 6970 4.870991 AGAAGCAGCTAAAGGTAAATCGAC 59.129 41.667 0.00 0.00 0.00 4.20
2937 6971 3.532542 AGCAGCTAAAGGTAAATCGACC 58.467 45.455 0.00 0.00 40.08 4.79
2938 6972 2.284417 GCAGCTAAAGGTAAATCGACCG 59.716 50.000 0.00 0.00 44.88 4.79
2939 6973 3.777478 CAGCTAAAGGTAAATCGACCGA 58.223 45.455 0.00 0.00 44.88 4.69
2940 6974 4.178540 CAGCTAAAGGTAAATCGACCGAA 58.821 43.478 0.00 0.00 44.88 4.30
2941 6975 4.628333 CAGCTAAAGGTAAATCGACCGAAA 59.372 41.667 0.00 0.00 44.88 3.46
2942 6976 5.121142 CAGCTAAAGGTAAATCGACCGAAAA 59.879 40.000 0.00 0.00 44.88 2.29
2943 6977 5.121298 AGCTAAAGGTAAATCGACCGAAAAC 59.879 40.000 0.00 0.00 44.88 2.43
2944 6978 4.754372 AAAGGTAAATCGACCGAAAACC 57.246 40.909 11.00 11.00 44.88 3.27
2945 6979 2.340337 AGGTAAATCGACCGAAAACCG 58.660 47.619 12.33 0.00 44.88 4.44
2946 6980 2.029110 AGGTAAATCGACCGAAAACCGA 60.029 45.455 12.33 0.00 44.88 4.69
2947 6981 2.736192 GGTAAATCGACCGAAAACCGAA 59.264 45.455 0.00 0.00 41.76 4.30
2948 6982 3.371898 GGTAAATCGACCGAAAACCGAAT 59.628 43.478 0.00 0.00 41.76 3.34
2949 6983 4.142838 GGTAAATCGACCGAAAACCGAATT 60.143 41.667 0.00 0.00 41.76 2.17
2950 6984 4.492791 AAATCGACCGAAAACCGAATTT 57.507 36.364 0.00 0.00 41.76 1.82
2951 6985 2.953640 TCGACCGAAAACCGAATTTG 57.046 45.000 0.00 0.00 41.76 2.32
2952 6986 1.532007 TCGACCGAAAACCGAATTTGG 59.468 47.619 10.45 10.45 41.76 3.28
2953 6987 1.400500 CGACCGAAAACCGAATTTGGG 60.400 52.381 16.44 5.84 42.08 4.12
2954 6988 1.694844 ACCGAAAACCGAATTTGGGT 58.305 45.000 16.44 6.56 43.78 4.51
2955 6989 1.610038 ACCGAAAACCGAATTTGGGTC 59.390 47.619 16.44 9.03 44.88 4.46
2956 6990 1.609555 CCGAAAACCGAATTTGGGTCA 59.390 47.619 16.44 0.00 41.76 4.02
2957 6991 2.351350 CCGAAAACCGAATTTGGGTCAG 60.351 50.000 16.44 4.62 41.76 3.51
2958 6992 2.292292 CGAAAACCGAATTTGGGTCAGT 59.708 45.455 16.44 0.00 41.76 3.41
2959 6993 3.608474 CGAAAACCGAATTTGGGTCAGTC 60.608 47.826 16.44 7.23 41.76 3.51
2960 6994 1.519408 AACCGAATTTGGGTCAGTCG 58.481 50.000 16.44 0.00 36.57 4.18
2961 6995 0.682852 ACCGAATTTGGGTCAGTCGA 59.317 50.000 16.44 0.00 33.63 4.20
2962 6996 1.278127 ACCGAATTTGGGTCAGTCGAT 59.722 47.619 16.44 0.00 33.63 3.59
2963 6997 2.290071 ACCGAATTTGGGTCAGTCGATT 60.290 45.455 16.44 0.00 33.63 3.34
2964 6998 3.055675 ACCGAATTTGGGTCAGTCGATTA 60.056 43.478 16.44 0.00 33.63 1.75
2965 6999 3.936453 CCGAATTTGGGTCAGTCGATTAA 59.064 43.478 3.45 0.00 33.63 1.40
2966 7000 4.201783 CCGAATTTGGGTCAGTCGATTAAC 60.202 45.833 3.45 0.00 33.63 2.01
2967 7001 4.201783 CGAATTTGGGTCAGTCGATTAACC 60.202 45.833 0.00 0.00 33.63 2.85
2972 7006 4.476628 GGGTCAGTCGATTAACCCTAAA 57.523 45.455 12.06 0.00 46.57 1.85
2973 7007 4.186926 GGGTCAGTCGATTAACCCTAAAC 58.813 47.826 12.06 0.00 46.57 2.01
2974 7008 4.081254 GGGTCAGTCGATTAACCCTAAACT 60.081 45.833 12.06 0.00 46.57 2.66
2975 7009 5.485620 GGTCAGTCGATTAACCCTAAACTT 58.514 41.667 0.00 0.00 0.00 2.66
2976 7010 5.350640 GGTCAGTCGATTAACCCTAAACTTG 59.649 44.000 0.00 0.00 0.00 3.16
2977 7011 4.933400 TCAGTCGATTAACCCTAAACTTGC 59.067 41.667 0.00 0.00 0.00 4.01
2978 7012 4.935808 CAGTCGATTAACCCTAAACTTGCT 59.064 41.667 0.00 0.00 0.00 3.91
2979 7013 5.411669 CAGTCGATTAACCCTAAACTTGCTT 59.588 40.000 0.00 0.00 0.00 3.91
2980 7014 5.642491 AGTCGATTAACCCTAAACTTGCTTC 59.358 40.000 0.00 0.00 0.00 3.86
2981 7015 5.410439 GTCGATTAACCCTAAACTTGCTTCA 59.590 40.000 0.00 0.00 0.00 3.02
2982 7016 5.998981 TCGATTAACCCTAAACTTGCTTCAA 59.001 36.000 0.00 0.00 0.00 2.69
2983 7017 6.657541 TCGATTAACCCTAAACTTGCTTCAAT 59.342 34.615 0.00 0.00 0.00 2.57
2984 7018 6.967199 CGATTAACCCTAAACTTGCTTCAATC 59.033 38.462 0.00 0.00 0.00 2.67
2985 7019 4.766404 AACCCTAAACTTGCTTCAATCG 57.234 40.909 0.00 0.00 0.00 3.34
2986 7020 4.015872 ACCCTAAACTTGCTTCAATCGA 57.984 40.909 0.00 0.00 0.00 3.59
2987 7021 3.751698 ACCCTAAACTTGCTTCAATCGAC 59.248 43.478 0.00 0.00 0.00 4.20
2988 7022 3.127030 CCCTAAACTTGCTTCAATCGACC 59.873 47.826 0.00 0.00 0.00 4.79
2989 7023 3.127030 CCTAAACTTGCTTCAATCGACCC 59.873 47.826 0.00 0.00 0.00 4.46
2990 7024 2.568623 AACTTGCTTCAATCGACCCT 57.431 45.000 0.00 0.00 0.00 4.34
2991 7025 1.813513 ACTTGCTTCAATCGACCCTG 58.186 50.000 0.00 0.00 0.00 4.45
2992 7026 0.449388 CTTGCTTCAATCGACCCTGC 59.551 55.000 0.00 0.00 0.00 4.85
2993 7027 0.960364 TTGCTTCAATCGACCCTGCC 60.960 55.000 0.00 0.00 0.00 4.85
2994 7028 1.377202 GCTTCAATCGACCCTGCCA 60.377 57.895 0.00 0.00 0.00 4.92
2995 7029 1.372087 GCTTCAATCGACCCTGCCAG 61.372 60.000 0.00 0.00 0.00 4.85
2996 7030 0.745845 CTTCAATCGACCCTGCCAGG 60.746 60.000 2.91 2.91 34.30 4.45
2997 7031 2.819984 TTCAATCGACCCTGCCAGGC 62.820 60.000 4.81 3.66 32.73 4.85
2998 7032 3.329889 AATCGACCCTGCCAGGCA 61.330 61.111 15.23 15.23 36.92 4.75
2999 7033 2.905996 AATCGACCCTGCCAGGCAA 61.906 57.895 17.03 0.00 38.41 4.52
3000 7034 2.215451 AATCGACCCTGCCAGGCAAT 62.215 55.000 17.03 3.61 38.41 3.56
3001 7035 2.898920 ATCGACCCTGCCAGGCAATG 62.899 60.000 17.03 11.92 38.41 2.82
3002 7036 2.036256 GACCCTGCCAGGCAATGT 59.964 61.111 17.03 15.32 38.41 2.71
3003 7037 2.036256 ACCCTGCCAGGCAATGTC 59.964 61.111 17.03 0.00 38.41 3.06
3004 7038 2.357836 CCCTGCCAGGCAATGTCT 59.642 61.111 17.03 0.00 38.41 3.41
3005 7039 1.751927 CCCTGCCAGGCAATGTCTC 60.752 63.158 17.03 0.00 38.41 3.36
3006 7040 1.001764 CCTGCCAGGCAATGTCTCA 60.002 57.895 17.03 0.00 38.41 3.27
3007 7041 0.609957 CCTGCCAGGCAATGTCTCAA 60.610 55.000 17.03 0.00 38.41 3.02
3008 7042 0.809385 CTGCCAGGCAATGTCTCAAG 59.191 55.000 17.03 0.00 38.41 3.02
3009 7043 0.401356 TGCCAGGCAATGTCTCAAGA 59.599 50.000 13.33 0.00 34.76 3.02
3010 7044 0.807496 GCCAGGCAATGTCTCAAGAC 59.193 55.000 6.55 3.13 44.97 3.01
3011 7045 1.612726 GCCAGGCAATGTCTCAAGACT 60.613 52.381 6.55 0.00 44.99 3.24
3012 7046 2.787994 CCAGGCAATGTCTCAAGACTT 58.212 47.619 11.23 2.51 44.99 3.01
3013 7047 3.152341 CCAGGCAATGTCTCAAGACTTT 58.848 45.455 11.23 8.31 44.99 2.66
3014 7048 3.190118 CCAGGCAATGTCTCAAGACTTTC 59.810 47.826 11.23 5.95 44.99 2.62
3015 7049 4.070716 CAGGCAATGTCTCAAGACTTTCT 58.929 43.478 11.23 3.73 44.99 2.52
3016 7050 4.153835 CAGGCAATGTCTCAAGACTTTCTC 59.846 45.833 11.23 5.98 44.99 2.87
3017 7051 4.041444 AGGCAATGTCTCAAGACTTTCTCT 59.959 41.667 11.23 7.72 44.99 3.10
3018 7052 4.391523 GGCAATGTCTCAAGACTTTCTCTC 59.608 45.833 11.23 1.81 44.99 3.20
3019 7053 4.993584 GCAATGTCTCAAGACTTTCTCTCA 59.006 41.667 11.23 0.00 44.99 3.27
3020 7054 5.107143 GCAATGTCTCAAGACTTTCTCTCAC 60.107 44.000 11.23 0.00 44.99 3.51
3021 7055 6.222389 CAATGTCTCAAGACTTTCTCTCACT 58.778 40.000 11.23 0.00 44.99 3.41
3022 7056 5.193663 TGTCTCAAGACTTTCTCTCACTG 57.806 43.478 11.23 0.00 44.99 3.66
3023 7057 4.889995 TGTCTCAAGACTTTCTCTCACTGA 59.110 41.667 11.23 0.00 44.99 3.41
3024 7058 5.219633 GTCTCAAGACTTTCTCTCACTGAC 58.780 45.833 2.86 0.00 41.65 3.51
3025 7059 4.023622 TCTCAAGACTTTCTCTCACTGACG 60.024 45.833 0.00 0.00 0.00 4.35
3026 7060 3.004839 TCAAGACTTTCTCTCACTGACGG 59.995 47.826 0.00 0.00 0.00 4.79
3027 7061 2.588620 AGACTTTCTCTCACTGACGGT 58.411 47.619 0.00 0.00 0.00 4.83
3028 7062 2.554893 AGACTTTCTCTCACTGACGGTC 59.445 50.000 0.00 0.00 0.00 4.79
3029 7063 2.554893 GACTTTCTCTCACTGACGGTCT 59.445 50.000 9.88 0.00 0.00 3.85
3030 7064 2.959707 ACTTTCTCTCACTGACGGTCTT 59.040 45.455 9.88 0.00 0.00 3.01
3031 7065 3.385111 ACTTTCTCTCACTGACGGTCTTT 59.615 43.478 9.88 0.00 0.00 2.52
3032 7066 3.371102 TTCTCTCACTGACGGTCTTTG 57.629 47.619 9.88 6.47 0.00 2.77
3033 7067 2.583143 TCTCTCACTGACGGTCTTTGA 58.417 47.619 9.88 10.26 0.00 2.69
3034 7068 2.956333 TCTCTCACTGACGGTCTTTGAA 59.044 45.455 9.88 3.12 0.00 2.69
3035 7069 3.053455 CTCTCACTGACGGTCTTTGAAC 58.947 50.000 9.88 0.00 0.00 3.18
3036 7070 2.429250 TCTCACTGACGGTCTTTGAACA 59.571 45.455 9.88 0.00 0.00 3.18
3037 7071 2.540101 CTCACTGACGGTCTTTGAACAC 59.460 50.000 9.88 0.00 0.00 3.32
3038 7072 1.257936 CACTGACGGTCTTTGAACACG 59.742 52.381 9.88 0.00 0.00 4.49
3039 7073 1.134907 ACTGACGGTCTTTGAACACGT 60.135 47.619 9.88 0.00 40.85 4.49
3041 7075 0.857287 GACGGTCTTTGAACACGTCC 59.143 55.000 0.00 0.00 45.70 4.79
3042 7076 0.176219 ACGGTCTTTGAACACGTCCA 59.824 50.000 0.00 0.00 31.39 4.02
3043 7077 1.292061 CGGTCTTTGAACACGTCCAA 58.708 50.000 0.00 0.00 0.00 3.53
3044 7078 1.666700 CGGTCTTTGAACACGTCCAAA 59.333 47.619 6.98 6.98 0.00 3.28
3045 7079 2.538132 CGGTCTTTGAACACGTCCAAAC 60.538 50.000 3.91 0.00 0.00 2.93
3046 7080 2.420722 GGTCTTTGAACACGTCCAAACA 59.579 45.455 3.91 0.00 0.00 2.83
3047 7081 3.119779 GGTCTTTGAACACGTCCAAACAA 60.120 43.478 3.91 0.00 0.00 2.83
3048 7082 4.095610 GTCTTTGAACACGTCCAAACAAG 58.904 43.478 3.91 0.00 0.00 3.16
3049 7083 3.127895 TCTTTGAACACGTCCAAACAAGG 59.872 43.478 3.91 0.00 0.00 3.61
3050 7084 0.736053 TGAACACGTCCAAACAAGGC 59.264 50.000 0.00 0.00 0.00 4.35
3051 7085 0.736053 GAACACGTCCAAACAAGGCA 59.264 50.000 0.00 0.00 0.00 4.75
3052 7086 1.133407 GAACACGTCCAAACAAGGCAA 59.867 47.619 0.00 0.00 0.00 4.52
3053 7087 0.454196 ACACGTCCAAACAAGGCAAC 59.546 50.000 0.00 0.00 0.00 4.17
3054 7088 0.248866 CACGTCCAAACAAGGCAACC 60.249 55.000 0.00 0.00 37.17 3.77
3055 7089 0.681564 ACGTCCAAACAAGGCAACCA 60.682 50.000 0.00 0.00 37.17 3.67
3056 7090 0.457851 CGTCCAAACAAGGCAACCAA 59.542 50.000 0.00 0.00 37.17 3.67
3057 7091 1.134965 CGTCCAAACAAGGCAACCAAA 60.135 47.619 0.00 0.00 37.17 3.28
3058 7092 2.675317 CGTCCAAACAAGGCAACCAAAA 60.675 45.455 0.00 0.00 37.17 2.44
3059 7093 2.935849 GTCCAAACAAGGCAACCAAAAG 59.064 45.455 0.00 0.00 37.17 2.27
3060 7094 2.093235 TCCAAACAAGGCAACCAAAAGG 60.093 45.455 0.00 0.00 37.17 3.11
3061 7095 2.355615 CCAAACAAGGCAACCAAAAGGT 60.356 45.455 0.00 0.00 37.17 3.50
3062 7096 2.677337 CAAACAAGGCAACCAAAAGGTG 59.323 45.455 0.00 0.00 37.17 4.00
3063 7097 1.859302 ACAAGGCAACCAAAAGGTGA 58.141 45.000 0.00 0.00 37.17 4.02
3064 7098 1.480545 ACAAGGCAACCAAAAGGTGAC 59.519 47.619 0.00 0.00 37.17 3.67
3065 7099 0.744281 AAGGCAACCAAAAGGTGACG 59.256 50.000 0.00 0.00 37.17 4.35
3066 7100 1.106944 AGGCAACCAAAAGGTGACGG 61.107 55.000 0.00 0.00 37.17 4.79
3067 7101 1.104577 GGCAACCAAAAGGTGACGGA 61.105 55.000 0.00 0.00 0.00 4.69
3068 7102 0.030235 GCAACCAAAAGGTGACGGAC 59.970 55.000 0.00 0.00 0.00 4.79
3069 7103 0.306533 CAACCAAAAGGTGACGGACG 59.693 55.000 0.00 0.00 0.00 4.79
3070 7104 0.107557 AACCAAAAGGTGACGGACGT 60.108 50.000 0.00 0.00 0.00 4.34
3071 7105 0.812412 ACCAAAAGGTGACGGACGTG 60.812 55.000 0.53 0.00 0.00 4.49
3072 7106 0.531090 CCAAAAGGTGACGGACGTGA 60.531 55.000 0.53 0.00 0.00 4.35
3073 7107 0.580104 CAAAAGGTGACGGACGTGAC 59.420 55.000 0.53 3.59 0.00 3.67
3074 7108 0.872881 AAAAGGTGACGGACGTGACG 60.873 55.000 2.24 2.24 33.09 4.35
3075 7109 3.836176 AAGGTGACGGACGTGACGC 62.836 63.158 4.25 0.00 33.09 5.19
3076 7110 4.634133 GGTGACGGACGTGACGCA 62.634 66.667 4.25 5.89 33.09 5.24
3077 7111 2.430244 GTGACGGACGTGACGCAT 60.430 61.111 4.25 0.00 34.00 4.73
3078 7112 2.430075 TGACGGACGTGACGCATG 60.430 61.111 4.25 0.00 34.00 4.06
3079 7113 3.838795 GACGGACGTGACGCATGC 61.839 66.667 7.91 7.91 34.00 4.06
3080 7114 4.656117 ACGGACGTGACGCATGCA 62.656 61.111 19.57 0.00 34.00 3.96
3081 7115 3.188100 CGGACGTGACGCATGCAT 61.188 61.111 19.57 0.36 0.00 3.96
3082 7116 2.703409 GGACGTGACGCATGCATC 59.297 61.111 19.57 13.50 0.00 3.91
3083 7117 2.703409 GACGTGACGCATGCATCC 59.297 61.111 19.57 5.35 0.00 3.51
3084 7118 2.047370 ACGTGACGCATGCATCCA 60.047 55.556 19.57 9.00 0.00 3.41
3085 7119 1.431488 GACGTGACGCATGCATCCAT 61.431 55.000 19.57 0.00 0.00 3.41
3093 7127 1.069090 CATGCATCCATGGCAAGGC 59.931 57.895 6.96 4.82 45.60 4.35
3094 7128 2.495409 ATGCATCCATGGCAAGGCG 61.495 57.895 6.96 0.00 45.60 5.52
3095 7129 3.142838 GCATCCATGGCAAGGCGT 61.143 61.111 6.96 0.00 0.00 5.68
3096 7130 2.713967 GCATCCATGGCAAGGCGTT 61.714 57.895 6.96 0.00 0.00 4.84
3097 7131 1.434696 CATCCATGGCAAGGCGTTC 59.565 57.895 6.96 0.00 0.00 3.95
3098 7132 1.754234 ATCCATGGCAAGGCGTTCC 60.754 57.895 6.96 0.00 0.00 3.62
3100 7134 2.703798 CCATGGCAAGGCGTTCCTG 61.704 63.158 0.00 0.00 43.40 3.86
3101 7135 1.675310 CATGGCAAGGCGTTCCTGA 60.675 57.895 0.00 0.00 43.40 3.86
3102 7136 1.033746 CATGGCAAGGCGTTCCTGAT 61.034 55.000 0.00 0.00 43.40 2.90
3103 7137 0.323725 ATGGCAAGGCGTTCCTGATT 60.324 50.000 0.00 0.00 43.40 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 29 9.547753 GTGCTCATAAGGATTTACTTTGATCTA 57.452 33.333 0.00 0.00 32.02 1.98
101 103 7.966812 TCTACACAACATCAGCTATCCATATT 58.033 34.615 0.00 0.00 0.00 1.28
103 105 6.976934 TCTACACAACATCAGCTATCCATA 57.023 37.500 0.00 0.00 0.00 2.74
193 195 3.007506 TCTCGTGTAAGGCAATTCTGGAA 59.992 43.478 0.00 0.00 0.00 3.53
268 271 3.069729 ACGAGTACAGAAGCTGGAAACTT 59.930 43.478 0.00 0.00 35.51 2.66
311 314 5.885912 AGTTTCTACAACACTTTCATGTGGT 59.114 36.000 0.00 0.00 40.06 4.16
314 317 5.221048 GCCAGTTTCTACAACACTTTCATGT 60.221 40.000 0.00 0.00 0.00 3.21
334 339 2.031516 CGAACAGAGTGCCTGCCAG 61.032 63.158 0.00 0.00 46.81 4.85
337 342 3.867771 CTCGAACAGAGTGCCTGC 58.132 61.111 0.00 0.00 46.81 4.85
352 358 4.451900 TCACAACTCTTTCCCTTGAACTC 58.548 43.478 0.00 0.00 0.00 3.01
371 382 4.061596 CCTTCTGAAACACTCCTTCTCAC 58.938 47.826 0.00 0.00 0.00 3.51
476 487 5.192927 CCAACTGCCATCTAAACCTATCAA 58.807 41.667 0.00 0.00 0.00 2.57
701 714 8.924511 AAGCAGCATACACCATACTTTATTAT 57.075 30.769 0.00 0.00 0.00 1.28
753 820 1.849219 GTCTGTCAGCGATTTCTAGCG 59.151 52.381 0.00 0.00 38.61 4.26
769 3736 2.358957 TGGATCATTCTTTGCCGTCTG 58.641 47.619 0.00 0.00 0.00 3.51
781 3748 2.301296 CGCTACTCCCTGATGGATCATT 59.699 50.000 0.00 0.00 44.07 2.57
792 3759 4.695928 GTCTTGAAAATTTCGCTACTCCCT 59.304 41.667 0.97 0.00 0.00 4.20
794 3761 4.151867 ACGTCTTGAAAATTTCGCTACTCC 59.848 41.667 0.97 0.00 0.00 3.85
799 4242 2.650608 GCACGTCTTGAAAATTTCGCT 58.349 42.857 0.97 0.00 0.00 4.93
801 4244 2.898746 TCGCACGTCTTGAAAATTTCG 58.101 42.857 0.97 0.00 0.00 3.46
819 4262 0.673644 GACACCACAAGTCCCCATCG 60.674 60.000 0.00 0.00 0.00 3.84
844 4287 3.974912 TCTGAAAACGAATTGCAATGCA 58.025 36.364 17.71 2.72 36.47 3.96
845 4288 4.208873 TGTTCTGAAAACGAATTGCAATGC 59.791 37.500 13.82 10.51 0.00 3.56
857 4300 4.031314 GCGGTGACTTTTTGTTCTGAAAAC 59.969 41.667 0.00 0.00 0.00 2.43
864 4307 2.794350 CCATTGCGGTGACTTTTTGTTC 59.206 45.455 0.00 0.00 0.00 3.18
950 4399 4.644685 CCGGTGATCCCTTGATTAATTGTT 59.355 41.667 0.00 0.00 0.00 2.83
1602 5091 2.746359 GTGCAGGTGCTCTCCACT 59.254 61.111 3.18 0.00 44.08 4.00
2014 5572 0.608582 CCCTGCTGCTTCTGCTTCTT 60.609 55.000 0.00 0.00 40.48 2.52
2070 5628 0.182061 ATCGGTACCTAGCAGACGGA 59.818 55.000 10.90 0.00 0.00 4.69
2105 5663 1.796796 GTGCAAAGGATGACCGCTC 59.203 57.895 0.00 0.00 41.83 5.03
2106 5664 2.034879 CGTGCAAAGGATGACCGCT 61.035 57.895 0.00 0.00 41.83 5.52
2107 5665 1.369091 ATCGTGCAAAGGATGACCGC 61.369 55.000 0.00 0.00 41.83 5.68
2123 5681 2.636830 ACTGAGCAAGGAATTCCATCG 58.363 47.619 26.22 14.33 38.89 3.84
2124 5682 4.219288 ACAAACTGAGCAAGGAATTCCATC 59.781 41.667 26.22 17.17 38.89 3.51
2125 5683 4.154942 ACAAACTGAGCAAGGAATTCCAT 58.845 39.130 26.22 12.25 38.89 3.41
2126 5684 3.565307 ACAAACTGAGCAAGGAATTCCA 58.435 40.909 26.22 3.48 38.89 3.53
2127 5685 4.037923 TGAACAAACTGAGCAAGGAATTCC 59.962 41.667 17.31 17.31 0.00 3.01
2128 5686 4.978580 GTGAACAAACTGAGCAAGGAATTC 59.021 41.667 0.00 0.00 0.00 2.17
2129 5687 4.646492 AGTGAACAAACTGAGCAAGGAATT 59.354 37.500 0.00 0.00 0.00 2.17
2130 5688 4.210331 AGTGAACAAACTGAGCAAGGAAT 58.790 39.130 0.00 0.00 0.00 3.01
2131 5689 3.620488 AGTGAACAAACTGAGCAAGGAA 58.380 40.909 0.00 0.00 0.00 3.36
2132 5690 3.281727 AGTGAACAAACTGAGCAAGGA 57.718 42.857 0.00 0.00 0.00 3.36
2133 5691 4.354587 GAAAGTGAACAAACTGAGCAAGG 58.645 43.478 0.00 0.00 0.00 3.61
2223 6013 5.820131 TGTGTTTTGTTAGCTCTTGTGATG 58.180 37.500 0.00 0.00 0.00 3.07
2234 6028 8.482429 GCAAATGAGAAGATTGTGTTTTGTTAG 58.518 33.333 0.00 0.00 0.00 2.34
2270 6111 6.092533 CACATTTTCTTCAACTGGCAAAAGTT 59.907 34.615 0.00 0.00 41.08 2.66
2272 6113 5.502869 GCACATTTTCTTCAACTGGCAAAAG 60.503 40.000 0.00 0.00 0.00 2.27
2274 6115 3.870419 GCACATTTTCTTCAACTGGCAAA 59.130 39.130 0.00 0.00 0.00 3.68
2275 6116 3.132646 AGCACATTTTCTTCAACTGGCAA 59.867 39.130 0.00 0.00 0.00 4.52
2277 6118 3.375782 AGCACATTTTCTTCAACTGGC 57.624 42.857 0.00 0.00 0.00 4.85
2278 6119 5.009010 ACAGTAGCACATTTTCTTCAACTGG 59.991 40.000 0.00 0.00 36.89 4.00
2280 6121 5.590259 ACACAGTAGCACATTTTCTTCAACT 59.410 36.000 0.00 0.00 0.00 3.16
2281 6122 5.821204 ACACAGTAGCACATTTTCTTCAAC 58.179 37.500 0.00 0.00 0.00 3.18
2282 6123 7.744087 ATACACAGTAGCACATTTTCTTCAA 57.256 32.000 0.00 0.00 0.00 2.69
2284 6125 9.708222 CAATATACACAGTAGCACATTTTCTTC 57.292 33.333 0.00 0.00 0.00 2.87
2286 6127 7.201732 GGCAATATACACAGTAGCACATTTTCT 60.202 37.037 0.00 0.00 0.00 2.52
2287 6128 6.912591 GGCAATATACACAGTAGCACATTTTC 59.087 38.462 0.00 0.00 0.00 2.29
2288 6129 6.603201 AGGCAATATACACAGTAGCACATTTT 59.397 34.615 0.00 0.00 0.00 1.82
2290 6131 5.684704 AGGCAATATACACAGTAGCACATT 58.315 37.500 0.00 0.00 0.00 2.71
2291 6132 5.296151 AGGCAATATACACAGTAGCACAT 57.704 39.130 0.00 0.00 0.00 3.21
2292 6133 4.753516 AGGCAATATACACAGTAGCACA 57.246 40.909 0.00 0.00 0.00 4.57
2293 6134 7.813852 GTATAGGCAATATACACAGTAGCAC 57.186 40.000 11.49 0.00 43.94 4.40
2350 6191 1.888215 ATGACACTGCAGGACTGTTG 58.112 50.000 19.93 8.48 0.00 3.33
2384 6230 7.981102 AAAATACTCCAACAACTCTAACTCC 57.019 36.000 0.00 0.00 0.00 3.85
2404 6250 6.773976 TGCCCATATTCGAAGAAGAAAAAT 57.226 33.333 3.35 0.00 45.90 1.82
2405 6251 6.432783 TCTTGCCCATATTCGAAGAAGAAAAA 59.567 34.615 3.35 0.00 45.90 1.94
2413 6266 9.778993 CATATTTATTCTTGCCCATATTCGAAG 57.221 33.333 3.35 0.00 0.00 3.79
2415 6268 8.106462 TCCATATTTATTCTTGCCCATATTCGA 58.894 33.333 0.00 0.00 0.00 3.71
2439 6292 4.985538 TCTTAGGAAAGATGAGTCGTCC 57.014 45.455 8.80 0.00 36.80 4.79
2454 6309 3.906846 ACTTGAGGCCATAGGATCTTAGG 59.093 47.826 5.01 0.00 0.00 2.69
2497 6352 1.519455 GAGTTCAGGTGGGCGATCG 60.519 63.158 11.69 11.69 0.00 3.69
2503 6360 2.887151 AGGAATTGAGTTCAGGTGGG 57.113 50.000 0.00 0.00 38.64 4.61
2614 6636 3.215151 CCTAGCCGAGAGTCAACTCATA 58.785 50.000 12.43 0.00 45.21 2.15
2664 6687 2.359900 GGAGTGGCCTACAGTTTCATG 58.640 52.381 3.32 0.00 31.34 3.07
2665 6688 1.066143 CGGAGTGGCCTACAGTTTCAT 60.066 52.381 3.32 0.00 31.34 2.57
2667 6690 0.606604 TCGGAGTGGCCTACAGTTTC 59.393 55.000 3.32 0.00 31.34 2.78
2686 6709 5.723887 AGAAACTATCAGACAGATCCCACTT 59.276 40.000 0.00 0.00 38.19 3.16
2687 6710 5.128499 CAGAAACTATCAGACAGATCCCACT 59.872 44.000 0.00 0.00 38.19 4.00
2688 6711 5.355596 CAGAAACTATCAGACAGATCCCAC 58.644 45.833 0.00 0.00 38.19 4.61
2689 6712 4.141846 GCAGAAACTATCAGACAGATCCCA 60.142 45.833 0.00 0.00 38.19 4.37
2690 6713 4.141846 TGCAGAAACTATCAGACAGATCCC 60.142 45.833 0.00 0.00 38.19 3.85
2692 6715 4.808364 GGTGCAGAAACTATCAGACAGATC 59.192 45.833 0.00 0.00 38.19 2.75
2695 6718 3.930336 TGGTGCAGAAACTATCAGACAG 58.070 45.455 0.00 0.00 0.00 3.51
2696 6719 4.350368 TTGGTGCAGAAACTATCAGACA 57.650 40.909 0.00 0.00 0.00 3.41
2697 6720 6.985188 TTATTGGTGCAGAAACTATCAGAC 57.015 37.500 0.00 0.00 0.00 3.51
2698 6721 7.568349 AGATTATTGGTGCAGAAACTATCAGA 58.432 34.615 0.00 0.00 0.00 3.27
2699 6722 7.798596 AGATTATTGGTGCAGAAACTATCAG 57.201 36.000 0.00 0.00 0.00 2.90
2700 6723 9.679661 TTTAGATTATTGGTGCAGAAACTATCA 57.320 29.630 0.00 0.00 0.00 2.15
2702 6725 8.903820 GGTTTAGATTATTGGTGCAGAAACTAT 58.096 33.333 0.00 0.00 0.00 2.12
2703 6726 8.107095 AGGTTTAGATTATTGGTGCAGAAACTA 58.893 33.333 0.00 0.00 0.00 2.24
2704 6727 6.948309 AGGTTTAGATTATTGGTGCAGAAACT 59.052 34.615 0.00 0.00 0.00 2.66
2705 6728 7.158099 AGGTTTAGATTATTGGTGCAGAAAC 57.842 36.000 0.00 0.00 0.00 2.78
2714 6748 8.053355 ACTTTGTCCCTAGGTTTAGATTATTGG 58.947 37.037 8.29 0.00 0.00 3.16
2732 6766 3.139077 CCTGTCTGTAACCACTTTGTCC 58.861 50.000 0.00 0.00 0.00 4.02
2739 6773 2.611224 CCGTAACCCTGTCTGTAACCAC 60.611 54.545 0.00 0.00 0.00 4.16
2758 6792 2.131709 TCGGTGGAGGATTAGCCCG 61.132 63.158 0.00 0.00 37.37 6.13
2775 6809 4.589908 ACTTTCATTGTGATAGTGGGGTC 58.410 43.478 2.90 0.00 37.30 4.46
2777 6811 6.356556 TGATACTTTCATTGTGATAGTGGGG 58.643 40.000 11.60 0.00 38.71 4.96
2785 6819 9.764363 GTATGACCTATGATACTTTCATTGTGA 57.236 33.333 0.00 0.00 42.62 3.58
2786 6820 9.770097 AGTATGACCTATGATACTTTCATTGTG 57.230 33.333 0.00 0.00 42.62 3.33
2797 6831 9.987272 GCATGCATAATAGTATGACCTATGATA 57.013 33.333 14.21 0.00 39.72 2.15
2798 6832 7.935755 GGCATGCATAATAGTATGACCTATGAT 59.064 37.037 21.36 0.00 39.72 2.45
2799 6833 7.092935 TGGCATGCATAATAGTATGACCTATGA 60.093 37.037 21.36 0.00 38.67 2.15
2800 6834 7.049754 TGGCATGCATAATAGTATGACCTATG 58.950 38.462 21.36 11.73 38.67 2.23
2801 6835 7.199167 TGGCATGCATAATAGTATGACCTAT 57.801 36.000 21.36 0.22 38.67 2.57
2802 6836 6.619329 TGGCATGCATAATAGTATGACCTA 57.381 37.500 21.36 0.00 38.67 3.08
2803 6837 5.503634 TGGCATGCATAATAGTATGACCT 57.496 39.130 21.36 0.00 38.67 3.85
2804 6838 5.707298 AGTTGGCATGCATAATAGTATGACC 59.293 40.000 21.36 9.09 38.67 4.02
2805 6839 6.808008 AGTTGGCATGCATAATAGTATGAC 57.192 37.500 21.36 6.10 39.72 3.06
2806 6840 6.589907 CGTAGTTGGCATGCATAATAGTATGA 59.410 38.462 21.36 0.26 39.72 2.15
2807 6841 6.673076 GCGTAGTTGGCATGCATAATAGTATG 60.673 42.308 21.36 5.82 40.23 2.39
2808 6842 5.351465 GCGTAGTTGGCATGCATAATAGTAT 59.649 40.000 21.36 0.00 0.00 2.12
2809 6843 4.688879 GCGTAGTTGGCATGCATAATAGTA 59.311 41.667 21.36 3.88 0.00 1.82
2810 6844 3.498397 GCGTAGTTGGCATGCATAATAGT 59.502 43.478 21.36 4.83 0.00 2.12
2811 6845 3.498018 TGCGTAGTTGGCATGCATAATAG 59.502 43.478 21.36 5.95 35.04 1.73
2812 6846 3.471680 TGCGTAGTTGGCATGCATAATA 58.528 40.909 21.36 7.18 35.04 0.98
2813 6847 2.296792 TGCGTAGTTGGCATGCATAAT 58.703 42.857 21.36 8.25 35.04 1.28
2814 6848 1.743996 TGCGTAGTTGGCATGCATAA 58.256 45.000 21.36 11.29 35.04 1.90
2815 6849 3.467776 TGCGTAGTTGGCATGCATA 57.532 47.368 21.36 4.71 35.04 3.14
2816 6850 4.317359 TGCGTAGTTGGCATGCAT 57.683 50.000 21.36 4.57 35.04 3.96
2821 6855 0.521291 GCAAGAATGCGTAGTTGGCA 59.479 50.000 3.13 0.00 43.83 4.92
2822 6856 3.312709 GCAAGAATGCGTAGTTGGC 57.687 52.632 3.13 0.00 43.83 4.52
2840 6874 7.601073 TCTGTTTTATTGTGTGCTATCTCAG 57.399 36.000 0.00 0.00 0.00 3.35
2841 6875 7.977789 TTCTGTTTTATTGTGTGCTATCTCA 57.022 32.000 0.00 0.00 0.00 3.27
2842 6876 9.846248 AATTTCTGTTTTATTGTGTGCTATCTC 57.154 29.630 0.00 0.00 0.00 2.75
2847 6881 8.299570 CCTCTAATTTCTGTTTTATTGTGTGCT 58.700 33.333 0.00 0.00 0.00 4.40
2848 6882 7.542130 CCCTCTAATTTCTGTTTTATTGTGTGC 59.458 37.037 0.00 0.00 0.00 4.57
2849 6883 8.576442 ACCCTCTAATTTCTGTTTTATTGTGTG 58.424 33.333 0.00 0.00 0.00 3.82
2850 6884 8.706322 ACCCTCTAATTTCTGTTTTATTGTGT 57.294 30.769 0.00 0.00 0.00 3.72
2851 6885 9.410556 CAACCCTCTAATTTCTGTTTTATTGTG 57.589 33.333 0.00 0.00 0.00 3.33
2852 6886 9.362151 TCAACCCTCTAATTTCTGTTTTATTGT 57.638 29.630 0.00 0.00 0.00 2.71
2853 6887 9.846248 CTCAACCCTCTAATTTCTGTTTTATTG 57.154 33.333 0.00 0.00 0.00 1.90
2854 6888 9.588096 ACTCAACCCTCTAATTTCTGTTTTATT 57.412 29.630 0.00 0.00 0.00 1.40
2857 6891 9.232473 GATACTCAACCCTCTAATTTCTGTTTT 57.768 33.333 0.00 0.00 0.00 2.43
2858 6892 8.383175 TGATACTCAACCCTCTAATTTCTGTTT 58.617 33.333 0.00 0.00 0.00 2.83
2859 6893 7.918076 TGATACTCAACCCTCTAATTTCTGTT 58.082 34.615 0.00 0.00 0.00 3.16
2860 6894 7.496346 TGATACTCAACCCTCTAATTTCTGT 57.504 36.000 0.00 0.00 0.00 3.41
2861 6895 8.834465 CATTGATACTCAACCCTCTAATTTCTG 58.166 37.037 0.00 0.00 39.45 3.02
2862 6896 8.772250 TCATTGATACTCAACCCTCTAATTTCT 58.228 33.333 0.00 0.00 39.45 2.52
2863 6897 8.964476 TCATTGATACTCAACCCTCTAATTTC 57.036 34.615 0.00 0.00 39.45 2.17
2868 6902 9.480861 CCTATATCATTGATACTCAACCCTCTA 57.519 37.037 8.51 0.00 39.45 2.43
2869 6903 8.180165 TCCTATATCATTGATACTCAACCCTCT 58.820 37.037 8.51 0.00 39.45 3.69
2870 6904 8.367660 TCCTATATCATTGATACTCAACCCTC 57.632 38.462 8.51 0.00 39.45 4.30
2871 6905 8.923838 ATCCTATATCATTGATACTCAACCCT 57.076 34.615 8.51 0.00 39.45 4.34
2874 6908 9.737427 CGGTATCCTATATCATTGATACTCAAC 57.263 37.037 8.51 3.66 39.45 3.18
2875 6909 9.475620 ACGGTATCCTATATCATTGATACTCAA 57.524 33.333 8.51 0.00 41.09 3.02
2892 6926 8.688151 GCTTCTCTTAATATGATACGGTATCCT 58.312 37.037 21.96 16.01 34.26 3.24
2893 6927 8.467598 TGCTTCTCTTAATATGATACGGTATCC 58.532 37.037 21.96 7.84 34.26 2.59
2894 6928 9.509855 CTGCTTCTCTTAATATGATACGGTATC 57.490 37.037 18.97 18.97 35.74 2.24
2895 6929 7.976734 GCTGCTTCTCTTAATATGATACGGTAT 59.023 37.037 0.00 0.00 0.00 2.73
2896 6930 7.176865 AGCTGCTTCTCTTAATATGATACGGTA 59.823 37.037 0.00 0.00 0.00 4.02
2897 6931 6.015010 AGCTGCTTCTCTTAATATGATACGGT 60.015 38.462 0.00 0.00 0.00 4.83
2898 6932 6.393990 AGCTGCTTCTCTTAATATGATACGG 58.606 40.000 0.00 0.00 0.00 4.02
2899 6933 8.972262 TTAGCTGCTTCTCTTAATATGATACG 57.028 34.615 7.79 0.00 0.00 3.06
2901 6935 9.935241 CCTTTAGCTGCTTCTCTTAATATGATA 57.065 33.333 7.79 0.00 0.00 2.15
2902 6936 8.435982 ACCTTTAGCTGCTTCTCTTAATATGAT 58.564 33.333 7.79 0.00 0.00 2.45
2903 6937 7.796054 ACCTTTAGCTGCTTCTCTTAATATGA 58.204 34.615 7.79 0.00 0.00 2.15
2904 6938 9.547753 TTACCTTTAGCTGCTTCTCTTAATATG 57.452 33.333 7.79 0.00 0.00 1.78
2907 6941 9.114952 GATTTACCTTTAGCTGCTTCTCTTAAT 57.885 33.333 7.79 0.57 0.00 1.40
2908 6942 7.277981 CGATTTACCTTTAGCTGCTTCTCTTAA 59.722 37.037 7.79 0.00 0.00 1.85
2909 6943 6.757010 CGATTTACCTTTAGCTGCTTCTCTTA 59.243 38.462 7.79 0.00 0.00 2.10
2910 6944 5.582665 CGATTTACCTTTAGCTGCTTCTCTT 59.417 40.000 7.79 0.00 0.00 2.85
2911 6945 5.105310 TCGATTTACCTTTAGCTGCTTCTCT 60.105 40.000 7.79 0.00 0.00 3.10
2912 6946 5.005875 GTCGATTTACCTTTAGCTGCTTCTC 59.994 44.000 7.79 0.00 0.00 2.87
2913 6947 4.870991 GTCGATTTACCTTTAGCTGCTTCT 59.129 41.667 7.79 0.00 0.00 2.85
2914 6948 4.034163 GGTCGATTTACCTTTAGCTGCTTC 59.966 45.833 7.79 0.00 36.53 3.86
2915 6949 3.939592 GGTCGATTTACCTTTAGCTGCTT 59.060 43.478 7.79 0.00 36.53 3.91
2916 6950 3.532542 GGTCGATTTACCTTTAGCTGCT 58.467 45.455 7.57 7.57 36.53 4.24
2917 6951 2.284417 CGGTCGATTTACCTTTAGCTGC 59.716 50.000 0.00 0.00 37.39 5.25
2918 6952 3.777478 TCGGTCGATTTACCTTTAGCTG 58.223 45.455 0.00 0.00 37.39 4.24
2919 6953 4.460948 TTCGGTCGATTTACCTTTAGCT 57.539 40.909 0.00 0.00 37.39 3.32
2920 6954 5.319139 GTTTTCGGTCGATTTACCTTTAGC 58.681 41.667 0.00 0.00 37.39 3.09
2921 6955 5.445010 CGGTTTTCGGTCGATTTACCTTTAG 60.445 44.000 13.23 0.00 37.39 1.85
2922 6956 4.388469 CGGTTTTCGGTCGATTTACCTTTA 59.612 41.667 13.23 0.00 37.39 1.85
2923 6957 3.187022 CGGTTTTCGGTCGATTTACCTTT 59.813 43.478 13.23 0.00 37.39 3.11
2924 6958 2.738314 CGGTTTTCGGTCGATTTACCTT 59.262 45.455 13.23 0.00 37.39 3.50
2925 6959 2.029110 TCGGTTTTCGGTCGATTTACCT 60.029 45.455 13.23 0.00 37.39 3.08
2926 6960 2.336667 TCGGTTTTCGGTCGATTTACC 58.663 47.619 0.00 2.14 39.77 2.85
2927 6961 4.588805 ATTCGGTTTTCGGTCGATTTAC 57.411 40.909 0.00 0.00 39.77 2.01
2928 6962 5.383958 CAAATTCGGTTTTCGGTCGATTTA 58.616 37.500 0.00 0.00 39.77 1.40
2929 6963 4.223659 CAAATTCGGTTTTCGGTCGATTT 58.776 39.130 0.00 0.00 39.77 2.17
2930 6964 3.365565 CCAAATTCGGTTTTCGGTCGATT 60.366 43.478 0.00 0.00 39.77 3.34
2931 6965 2.160813 CCAAATTCGGTTTTCGGTCGAT 59.839 45.455 0.00 0.00 39.77 3.59
2932 6966 1.532007 CCAAATTCGGTTTTCGGTCGA 59.468 47.619 0.00 0.00 39.77 4.20
2933 6967 1.400500 CCCAAATTCGGTTTTCGGTCG 60.400 52.381 0.00 0.00 39.77 4.79
2934 6968 1.610038 ACCCAAATTCGGTTTTCGGTC 59.390 47.619 0.00 0.00 39.77 4.79
2935 6969 1.610038 GACCCAAATTCGGTTTTCGGT 59.390 47.619 0.00 1.22 39.77 4.69
2936 6970 1.609555 TGACCCAAATTCGGTTTTCGG 59.390 47.619 0.00 0.00 39.77 4.30
2937 6971 2.292292 ACTGACCCAAATTCGGTTTTCG 59.708 45.455 0.00 0.00 40.90 3.46
2938 6972 3.608474 CGACTGACCCAAATTCGGTTTTC 60.608 47.826 0.00 0.00 32.48 2.29
2939 6973 2.292292 CGACTGACCCAAATTCGGTTTT 59.708 45.455 0.00 0.00 32.48 2.43
2940 6974 1.877443 CGACTGACCCAAATTCGGTTT 59.123 47.619 0.00 0.00 32.48 3.27
2941 6975 1.071071 TCGACTGACCCAAATTCGGTT 59.929 47.619 0.00 0.00 32.48 4.44
2942 6976 0.682852 TCGACTGACCCAAATTCGGT 59.317 50.000 0.00 0.00 35.17 4.69
2943 6977 2.024176 ATCGACTGACCCAAATTCGG 57.976 50.000 0.00 0.00 0.00 4.30
2944 6978 4.201783 GGTTAATCGACTGACCCAAATTCG 60.202 45.833 0.00 0.00 0.00 3.34
2945 6979 5.231265 GGTTAATCGACTGACCCAAATTC 57.769 43.478 0.00 0.00 0.00 2.17
2952 6986 5.082251 AGTTTAGGGTTAATCGACTGACC 57.918 43.478 0.00 0.00 0.00 4.02
2953 6987 5.163884 GCAAGTTTAGGGTTAATCGACTGAC 60.164 44.000 0.00 0.00 0.00 3.51
2954 6988 4.933400 GCAAGTTTAGGGTTAATCGACTGA 59.067 41.667 0.00 0.00 0.00 3.41
2955 6989 4.935808 AGCAAGTTTAGGGTTAATCGACTG 59.064 41.667 0.00 0.00 0.00 3.51
2956 6990 5.161943 AGCAAGTTTAGGGTTAATCGACT 57.838 39.130 0.00 0.00 0.00 4.18
2957 6991 5.410439 TGAAGCAAGTTTAGGGTTAATCGAC 59.590 40.000 0.00 0.00 0.00 4.20
2958 6992 5.553123 TGAAGCAAGTTTAGGGTTAATCGA 58.447 37.500 0.00 0.00 0.00 3.59
2959 6993 5.873179 TGAAGCAAGTTTAGGGTTAATCG 57.127 39.130 0.00 0.00 0.00 3.34
2960 6994 6.967199 CGATTGAAGCAAGTTTAGGGTTAATC 59.033 38.462 0.00 0.00 0.00 1.75
2961 6995 6.657541 TCGATTGAAGCAAGTTTAGGGTTAAT 59.342 34.615 0.00 0.00 0.00 1.40
2962 6996 5.998981 TCGATTGAAGCAAGTTTAGGGTTAA 59.001 36.000 0.00 0.00 0.00 2.01
2963 6997 5.410439 GTCGATTGAAGCAAGTTTAGGGTTA 59.590 40.000 0.00 0.00 0.00 2.85
2964 6998 4.215613 GTCGATTGAAGCAAGTTTAGGGTT 59.784 41.667 0.00 0.00 0.00 4.11
2965 6999 3.751698 GTCGATTGAAGCAAGTTTAGGGT 59.248 43.478 0.00 0.00 0.00 4.34
2966 7000 3.127030 GGTCGATTGAAGCAAGTTTAGGG 59.873 47.826 0.00 0.00 0.00 3.53
2967 7001 3.127030 GGGTCGATTGAAGCAAGTTTAGG 59.873 47.826 0.00 0.00 0.00 2.69
2968 7002 4.003648 AGGGTCGATTGAAGCAAGTTTAG 58.996 43.478 0.00 0.00 0.00 1.85
2969 7003 3.751175 CAGGGTCGATTGAAGCAAGTTTA 59.249 43.478 0.00 0.00 0.00 2.01
2970 7004 2.554032 CAGGGTCGATTGAAGCAAGTTT 59.446 45.455 0.00 0.00 0.00 2.66
2971 7005 2.154462 CAGGGTCGATTGAAGCAAGTT 58.846 47.619 0.00 0.00 0.00 2.66
2972 7006 1.813513 CAGGGTCGATTGAAGCAAGT 58.186 50.000 0.00 0.00 0.00 3.16
2973 7007 0.449388 GCAGGGTCGATTGAAGCAAG 59.551 55.000 0.00 0.00 0.00 4.01
2974 7008 0.960364 GGCAGGGTCGATTGAAGCAA 60.960 55.000 0.00 0.00 0.00 3.91
2975 7009 1.377202 GGCAGGGTCGATTGAAGCA 60.377 57.895 0.00 0.00 0.00 3.91
2976 7010 1.372087 CTGGCAGGGTCGATTGAAGC 61.372 60.000 6.61 0.00 0.00 3.86
2977 7011 0.745845 CCTGGCAGGGTCGATTGAAG 60.746 60.000 26.34 0.00 0.00 3.02
2978 7012 1.299648 CCTGGCAGGGTCGATTGAA 59.700 57.895 26.34 0.00 0.00 2.69
2979 7013 2.989639 CCTGGCAGGGTCGATTGA 59.010 61.111 26.34 0.00 0.00 2.57
2980 7014 2.825836 GCCTGGCAGGGTCGATTG 60.826 66.667 33.43 7.21 35.37 2.67
2981 7015 2.215451 ATTGCCTGGCAGGGTCGATT 62.215 55.000 33.43 5.24 40.61 3.34
2982 7016 2.683465 ATTGCCTGGCAGGGTCGAT 61.683 57.895 33.43 19.84 40.61 3.59
2983 7017 3.329889 ATTGCCTGGCAGGGTCGA 61.330 61.111 33.43 18.46 40.61 4.20
2984 7018 3.136123 CATTGCCTGGCAGGGTCG 61.136 66.667 33.43 9.91 40.61 4.79
2985 7019 2.036256 ACATTGCCTGGCAGGGTC 59.964 61.111 33.43 18.98 40.61 4.46
2986 7020 2.036256 GACATTGCCTGGCAGGGT 59.964 61.111 33.43 22.69 40.61 4.34
2987 7021 1.751927 GAGACATTGCCTGGCAGGG 60.752 63.158 33.43 19.58 40.61 4.45
2988 7022 0.609957 TTGAGACATTGCCTGGCAGG 60.610 55.000 29.44 29.44 40.61 4.85
2989 7023 0.809385 CTTGAGACATTGCCTGGCAG 59.191 55.000 22.17 13.83 40.61 4.85
2990 7024 0.401356 TCTTGAGACATTGCCTGGCA 59.599 50.000 19.30 19.30 34.10 4.92
2991 7025 0.807496 GTCTTGAGACATTGCCTGGC 59.193 55.000 12.87 12.87 44.18 4.85
3001 7035 5.219633 GTCAGTGAGAGAAAGTCTTGAGAC 58.780 45.833 2.93 2.93 45.08 3.36
3002 7036 4.023622 CGTCAGTGAGAGAAAGTCTTGAGA 60.024 45.833 0.00 0.00 34.71 3.27
3003 7037 4.225984 CGTCAGTGAGAGAAAGTCTTGAG 58.774 47.826 0.00 0.00 34.71 3.02
3004 7038 3.004839 CCGTCAGTGAGAGAAAGTCTTGA 59.995 47.826 0.00 0.00 34.71 3.02
3005 7039 3.243569 ACCGTCAGTGAGAGAAAGTCTTG 60.244 47.826 0.00 0.00 34.71 3.02
3006 7040 2.959707 ACCGTCAGTGAGAGAAAGTCTT 59.040 45.455 0.00 0.00 34.71 3.01
3007 7041 2.554893 GACCGTCAGTGAGAGAAAGTCT 59.445 50.000 0.00 0.00 38.71 3.24
3008 7042 2.554893 AGACCGTCAGTGAGAGAAAGTC 59.445 50.000 0.40 0.00 0.00 3.01
3009 7043 2.588620 AGACCGTCAGTGAGAGAAAGT 58.411 47.619 0.40 0.00 0.00 2.66
3010 7044 3.651803 AAGACCGTCAGTGAGAGAAAG 57.348 47.619 0.40 0.00 0.00 2.62
3011 7045 3.383505 TCAAAGACCGTCAGTGAGAGAAA 59.616 43.478 0.40 0.00 0.00 2.52
3012 7046 2.956333 TCAAAGACCGTCAGTGAGAGAA 59.044 45.455 0.40 0.00 0.00 2.87
3013 7047 2.583143 TCAAAGACCGTCAGTGAGAGA 58.417 47.619 0.40 0.00 0.00 3.10
3014 7048 3.053455 GTTCAAAGACCGTCAGTGAGAG 58.947 50.000 0.40 0.00 0.00 3.20
3015 7049 2.429250 TGTTCAAAGACCGTCAGTGAGA 59.571 45.455 0.40 0.00 0.00 3.27
3016 7050 2.540101 GTGTTCAAAGACCGTCAGTGAG 59.460 50.000 0.40 0.00 0.00 3.51
3017 7051 2.546778 GTGTTCAAAGACCGTCAGTGA 58.453 47.619 0.40 0.83 0.00 3.41
3018 7052 1.257936 CGTGTTCAAAGACCGTCAGTG 59.742 52.381 0.40 0.00 0.00 3.66
3019 7053 1.134907 ACGTGTTCAAAGACCGTCAGT 60.135 47.619 0.40 0.00 0.00 3.41
3020 7054 1.521423 GACGTGTTCAAAGACCGTCAG 59.479 52.381 0.00 0.00 40.11 3.51
3021 7055 1.563111 GACGTGTTCAAAGACCGTCA 58.437 50.000 0.00 0.00 40.11 4.35
3022 7056 0.857287 GGACGTGTTCAAAGACCGTC 59.143 55.000 0.00 0.00 39.88 4.79
3023 7057 0.176219 TGGACGTGTTCAAAGACCGT 59.824 50.000 0.00 0.00 32.06 4.83
3024 7058 1.292061 TTGGACGTGTTCAAAGACCG 58.708 50.000 0.00 0.00 0.00 4.79
3025 7059 2.420722 TGTTTGGACGTGTTCAAAGACC 59.579 45.455 6.70 0.00 34.11 3.85
3026 7060 3.750639 TGTTTGGACGTGTTCAAAGAC 57.249 42.857 6.70 0.00 34.11 3.01
3027 7061 3.127895 CCTTGTTTGGACGTGTTCAAAGA 59.872 43.478 6.70 3.20 34.11 2.52
3028 7062 3.434637 CCTTGTTTGGACGTGTTCAAAG 58.565 45.455 6.70 0.00 34.11 2.77
3029 7063 2.416162 GCCTTGTTTGGACGTGTTCAAA 60.416 45.455 2.32 2.32 0.00 2.69
3030 7064 1.133407 GCCTTGTTTGGACGTGTTCAA 59.867 47.619 0.00 0.00 0.00 2.69
3031 7065 0.736053 GCCTTGTTTGGACGTGTTCA 59.264 50.000 0.00 0.00 0.00 3.18
3032 7066 0.736053 TGCCTTGTTTGGACGTGTTC 59.264 50.000 0.00 0.00 0.00 3.18
3033 7067 1.135228 GTTGCCTTGTTTGGACGTGTT 60.135 47.619 0.00 0.00 0.00 3.32
3034 7068 0.454196 GTTGCCTTGTTTGGACGTGT 59.546 50.000 0.00 0.00 0.00 4.49
3035 7069 0.248866 GGTTGCCTTGTTTGGACGTG 60.249 55.000 0.00 0.00 0.00 4.49
3036 7070 0.681564 TGGTTGCCTTGTTTGGACGT 60.682 50.000 0.00 0.00 0.00 4.34
3037 7071 0.457851 TTGGTTGCCTTGTTTGGACG 59.542 50.000 0.00 0.00 0.00 4.79
3038 7072 2.682155 TTTGGTTGCCTTGTTTGGAC 57.318 45.000 0.00 0.00 0.00 4.02
3039 7073 2.093235 CCTTTTGGTTGCCTTGTTTGGA 60.093 45.455 0.00 0.00 34.07 3.53
3040 7074 2.287769 CCTTTTGGTTGCCTTGTTTGG 58.712 47.619 0.00 0.00 34.07 3.28
3054 7088 0.580104 GTCACGTCCGTCACCTTTTG 59.420 55.000 0.00 0.00 0.00 2.44
3055 7089 0.872881 CGTCACGTCCGTCACCTTTT 60.873 55.000 0.00 0.00 0.00 2.27
3056 7090 1.299620 CGTCACGTCCGTCACCTTT 60.300 57.895 0.00 0.00 0.00 3.11
3057 7091 2.333938 CGTCACGTCCGTCACCTT 59.666 61.111 0.00 0.00 0.00 3.50
3058 7092 4.338539 GCGTCACGTCCGTCACCT 62.339 66.667 0.00 0.00 0.00 4.00
3059 7093 3.909258 ATGCGTCACGTCCGTCACC 62.909 63.158 0.00 0.00 0.00 4.02
3060 7094 2.430244 ATGCGTCACGTCCGTCAC 60.430 61.111 0.00 0.00 0.00 3.67
3061 7095 2.430075 CATGCGTCACGTCCGTCA 60.430 61.111 0.00 5.25 0.00 4.35
3062 7096 3.838795 GCATGCGTCACGTCCGTC 61.839 66.667 0.00 0.32 0.00 4.79
3063 7097 3.932580 ATGCATGCGTCACGTCCGT 62.933 57.895 14.09 0.00 0.00 4.69
3064 7098 3.142867 GATGCATGCGTCACGTCCG 62.143 63.158 30.58 0.00 32.55 4.79
3065 7099 2.703409 GATGCATGCGTCACGTCC 59.297 61.111 30.58 6.65 32.55 4.79
3066 7100 1.431488 ATGGATGCATGCGTCACGTC 61.431 55.000 34.49 20.80 33.86 4.34
3067 7101 1.450134 ATGGATGCATGCGTCACGT 60.450 52.632 34.49 23.61 33.86 4.49
3068 7102 1.010462 CATGGATGCATGCGTCACG 60.010 57.895 34.49 20.99 33.86 4.35
3069 7103 1.357690 CCATGGATGCATGCGTCAC 59.642 57.895 34.49 25.13 33.86 3.67
3070 7104 2.483197 GCCATGGATGCATGCGTCA 61.483 57.895 34.49 23.11 33.86 4.35
3071 7105 2.007113 TTGCCATGGATGCATGCGTC 62.007 55.000 28.35 28.35 38.76 5.19
3072 7106 2.011741 CTTGCCATGGATGCATGCGT 62.012 55.000 20.86 13.43 38.76 5.24
3073 7107 1.299850 CTTGCCATGGATGCATGCG 60.300 57.895 20.86 14.82 38.76 4.73
3074 7108 1.069090 CCTTGCCATGGATGCATGC 59.931 57.895 20.86 11.82 38.76 4.06
3075 7109 1.069090 GCCTTGCCATGGATGCATG 59.931 57.895 18.40 19.49 38.76 4.06
3076 7110 2.495409 CGCCTTGCCATGGATGCAT 61.495 57.895 18.40 0.00 38.76 3.96
3077 7111 3.142162 CGCCTTGCCATGGATGCA 61.142 61.111 18.40 2.92 36.84 3.96
3078 7112 2.618312 GAACGCCTTGCCATGGATGC 62.618 60.000 18.40 10.45 0.00 3.91
3079 7113 1.434696 GAACGCCTTGCCATGGATG 59.565 57.895 18.40 3.87 0.00 3.51
3080 7114 1.754234 GGAACGCCTTGCCATGGAT 60.754 57.895 18.40 0.00 0.00 3.41
3081 7115 2.361104 GGAACGCCTTGCCATGGA 60.361 61.111 18.40 0.00 0.00 3.41
3082 7116 2.361610 AGGAACGCCTTGCCATGG 60.362 61.111 7.63 7.63 43.90 3.66
3083 7117 1.033746 ATCAGGAACGCCTTGCCATG 61.034 55.000 0.00 0.00 43.90 3.66
3084 7118 0.323725 AATCAGGAACGCCTTGCCAT 60.324 50.000 0.00 0.00 43.90 4.40
3085 7119 1.074775 AATCAGGAACGCCTTGCCA 59.925 52.632 0.00 0.00 43.90 4.92
3086 7120 4.002797 AATCAGGAACGCCTTGCC 57.997 55.556 0.00 0.00 43.90 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.