Multiple sequence alignment - TraesCS6B01G093600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G093600 chr6B 100.000 4462 0 0 1 4462 69547069 69551530 0.000000e+00 8240.0
1 TraesCS6B01G093600 chr6B 74.161 805 165 28 974 1756 69720107 69719324 1.210000e-75 294.0
2 TraesCS6B01G093600 chr6A 90.393 2977 190 49 800 3723 37450684 37453617 0.000000e+00 3825.0
3 TraesCS6B01G093600 chr6A 85.314 749 56 22 3737 4452 37453596 37454323 0.000000e+00 725.0
4 TraesCS6B01G093600 chr6A 75.203 984 186 38 1805 2764 38460849 38459900 3.210000e-111 412.0
5 TraesCS6B01G093600 chr6A 74.130 1063 197 58 1779 2797 37844809 37843781 7.050000e-98 368.0
6 TraesCS6B01G093600 chr6A 77.740 584 113 13 47 617 77964868 77964289 4.270000e-90 342.0
7 TraesCS6B01G093600 chr6A 82.155 297 43 5 2033 2327 38402440 38402152 3.450000e-61 246.0
8 TraesCS6B01G093600 chr6A 82.110 218 34 4 2293 2505 38402151 38401934 9.860000e-42 182.0
9 TraesCS6B01G093600 chr6D 92.385 2088 95 23 794 2835 32902427 32904496 0.000000e+00 2916.0
10 TraesCS6B01G093600 chr6D 82.332 549 50 26 3219 3723 32904807 32905352 2.470000e-117 433.0
11 TraesCS6B01G093600 chr6D 75.911 851 148 38 1933 2764 34322790 34321978 2.520000e-102 383.0
12 TraesCS6B01G093600 chr6D 73.819 1058 208 53 1779 2797 33252537 33251510 5.490000e-94 355.0
13 TraesCS6B01G093600 chr6D 82.828 396 53 11 2056 2446 34304871 34304486 1.540000e-89 340.0
14 TraesCS6B01G093600 chr6D 79.000 500 77 23 2032 2512 33304528 33304038 2.590000e-82 316.0
15 TraesCS6B01G093600 chr6D 85.965 228 19 5 2992 3218 32904532 32904747 9.650000e-57 231.0
16 TraesCS6B01G093600 chr6D 92.481 133 7 2 4240 4372 32908070 32908199 2.120000e-43 187.0
17 TraesCS6B01G093600 chr6D 98.592 71 1 0 4379 4449 32908240 32908310 4.690000e-25 126.0
18 TraesCS6B01G093600 chr2B 92.833 586 40 2 31 616 373502350 373501767 0.000000e+00 848.0
19 TraesCS6B01G093600 chr2B 80.923 325 62 0 32 356 619487407 619487731 1.590000e-64 257.0
20 TraesCS6B01G093600 chr1B 88.265 588 67 2 32 619 47130192 47129607 0.000000e+00 702.0
21 TraesCS6B01G093600 chr1B 81.622 370 68 0 29 398 180530971 180531340 1.560000e-79 307.0
22 TraesCS6B01G093600 chr2D 84.122 592 83 7 32 616 434689257 434688670 3.010000e-156 562.0
23 TraesCS6B01G093600 chr2D 78.833 600 97 23 29 617 582716735 582717315 1.170000e-100 377.0
24 TraesCS6B01G093600 chr3B 78.288 631 110 20 2 619 670328238 670328854 9.060000e-102 381.0
25 TraesCS6B01G093600 chr4A 73.615 758 164 23 2042 2784 647339347 647338611 4.430000e-65 259.0
26 TraesCS6B01G093600 chr7D 73.634 732 149 29 2056 2781 40709024 40709717 4.460000e-60 243.0
27 TraesCS6B01G093600 chr4B 78.995 219 40 3 1043 1255 109788647 109788865 1.290000e-30 145.0
28 TraesCS6B01G093600 chr4D 79.091 220 36 6 1044 1255 78367875 78367658 4.650000e-30 143.0
29 TraesCS6B01G093600 chr2A 80.328 122 24 0 1049 1170 679917473 679917594 4.750000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G093600 chr6B 69547069 69551530 4461 False 8240.0 8240 100.0000 1 4462 1 chr6B.!!$F1 4461
1 TraesCS6B01G093600 chr6B 69719324 69720107 783 True 294.0 294 74.1610 974 1756 1 chr6B.!!$R1 782
2 TraesCS6B01G093600 chr6A 37450684 37454323 3639 False 2275.0 3825 87.8535 800 4452 2 chr6A.!!$F1 3652
3 TraesCS6B01G093600 chr6A 38459900 38460849 949 True 412.0 412 75.2030 1805 2764 1 chr6A.!!$R2 959
4 TraesCS6B01G093600 chr6A 37843781 37844809 1028 True 368.0 368 74.1300 1779 2797 1 chr6A.!!$R1 1018
5 TraesCS6B01G093600 chr6A 77964289 77964868 579 True 342.0 342 77.7400 47 617 1 chr6A.!!$R3 570
6 TraesCS6B01G093600 chr6A 38401934 38402440 506 True 214.0 246 82.1325 2033 2505 2 chr6A.!!$R4 472
7 TraesCS6B01G093600 chr6D 32902427 32908310 5883 False 778.6 2916 90.3510 794 4449 5 chr6D.!!$F1 3655
8 TraesCS6B01G093600 chr6D 34321978 34322790 812 True 383.0 383 75.9110 1933 2764 1 chr6D.!!$R4 831
9 TraesCS6B01G093600 chr6D 33251510 33252537 1027 True 355.0 355 73.8190 1779 2797 1 chr6D.!!$R1 1018
10 TraesCS6B01G093600 chr2B 373501767 373502350 583 True 848.0 848 92.8330 31 616 1 chr2B.!!$R1 585
11 TraesCS6B01G093600 chr1B 47129607 47130192 585 True 702.0 702 88.2650 32 619 1 chr1B.!!$R1 587
12 TraesCS6B01G093600 chr2D 434688670 434689257 587 True 562.0 562 84.1220 32 616 1 chr2D.!!$R1 584
13 TraesCS6B01G093600 chr2D 582716735 582717315 580 False 377.0 377 78.8330 29 617 1 chr2D.!!$F1 588
14 TraesCS6B01G093600 chr3B 670328238 670328854 616 False 381.0 381 78.2880 2 619 1 chr3B.!!$F1 617
15 TraesCS6B01G093600 chr4A 647338611 647339347 736 True 259.0 259 73.6150 2042 2784 1 chr4A.!!$R1 742
16 TraesCS6B01G093600 chr7D 40709024 40709717 693 False 243.0 243 73.6340 2056 2781 1 chr7D.!!$F1 725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 514 0.029433 TCGGCGATGAGAGATCAACG 59.971 55.0 4.99 3.87 38.61 4.10 F
708 741 0.035056 ACTTTTGAGATGCCTCCCGG 60.035 55.0 0.00 0.00 38.66 5.73 F
787 820 0.165944 CATTTTCTGACCGCCGACAC 59.834 55.0 0.00 0.00 0.00 3.67 F
2348 2489 0.179124 GCTACAGTTCAGCGGAGAGG 60.179 60.0 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 1609 0.035056 AATGCTTCAGGGAACGGGAG 60.035 55.0 0.0 0.0 0.00 4.30 R
2348 2489 0.864455 GCTCTGATATTGCAGCCGAC 59.136 55.0 0.0 0.0 35.86 4.79 R
2509 2667 2.330440 TCACTGCTTGCTTTCACAGA 57.670 45.0 0.0 0.0 34.25 3.41 R
4281 6954 0.036875 GGCAAGTGAAGGGTGCTACT 59.963 55.0 0.0 0.0 38.36 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 187 5.904362 AGGTTTTAATCTTGACTGGCATC 57.096 39.130 0.00 0.00 0.00 3.91
204 206 2.316108 TCGCTAGTTCCCATGCTGATA 58.684 47.619 0.00 0.00 0.00 2.15
219 221 7.143340 CCATGCTGATATCATGTTACAAAAGG 58.857 38.462 5.72 1.83 39.60 3.11
221 223 8.573885 CATGCTGATATCATGTTACAAAAGGAT 58.426 33.333 5.72 0.00 37.22 3.24
265 267 3.321111 TCCATATGAACTCGGGCTAGAAC 59.679 47.826 3.65 0.00 0.00 3.01
270 272 1.757699 GAACTCGGGCTAGAACCATCT 59.242 52.381 0.00 0.00 39.82 2.90
343 345 2.234908 CGAGGTCATCTTCTTTGAGGGT 59.765 50.000 0.00 0.00 0.00 4.34
344 346 3.677424 CGAGGTCATCTTCTTTGAGGGTC 60.677 52.174 0.00 0.00 0.00 4.46
346 348 3.652869 AGGTCATCTTCTTTGAGGGTCAA 59.347 43.478 0.00 0.00 34.03 3.18
347 349 4.290722 AGGTCATCTTCTTTGAGGGTCAAT 59.709 41.667 0.00 0.00 36.11 2.57
350 352 5.124617 GTCATCTTCTTTGAGGGTCAATTCC 59.875 44.000 0.00 0.00 36.11 3.01
423 441 1.845627 CGGGCCAGCCATATGGATCT 61.846 60.000 26.47 10.99 43.57 2.75
437 455 2.894731 TGGATCTGTCACAGAAGGAGT 58.105 47.619 12.63 0.00 44.04 3.85
439 457 4.019858 TGGATCTGTCACAGAAGGAGTAG 58.980 47.826 12.63 0.00 44.04 2.57
455 478 4.399934 AGGAGTAGGATCTTCTCGAAACAC 59.600 45.833 0.00 0.00 30.31 3.32
469 495 1.071909 AAACACCAACCCTAGCCCCT 61.072 55.000 0.00 0.00 0.00 4.79
483 509 1.905843 CCCCTCGGCGATGAGAGAT 60.906 63.158 11.27 0.00 38.28 2.75
488 514 0.029433 TCGGCGATGAGAGATCAACG 59.971 55.000 4.99 3.87 38.61 4.10
499 525 1.143183 GATCAACGCTCGGGCCTTA 59.857 57.895 0.00 0.00 34.44 2.69
503 529 3.248446 AACGCTCGGGCCTTAGCAA 62.248 57.895 23.68 0.00 42.56 3.91
553 581 3.781307 CTCCAATCCACCGGCGGA 61.781 66.667 35.78 14.91 40.07 5.54
611 644 5.082425 AGAGGAACGAAACCCTAACTAGAA 58.918 41.667 0.00 0.00 31.84 2.10
654 687 7.944729 AAAACATCTTGCATTATACAGGAGT 57.055 32.000 0.00 0.00 0.00 3.85
655 688 7.559590 AAACATCTTGCATTATACAGGAGTC 57.440 36.000 0.00 0.00 0.00 3.36
656 689 6.491714 ACATCTTGCATTATACAGGAGTCT 57.508 37.500 0.00 0.00 0.00 3.24
657 690 7.603180 ACATCTTGCATTATACAGGAGTCTA 57.397 36.000 0.00 0.00 0.00 2.59
658 691 8.023021 ACATCTTGCATTATACAGGAGTCTAA 57.977 34.615 0.00 0.00 0.00 2.10
659 692 8.147058 ACATCTTGCATTATACAGGAGTCTAAG 58.853 37.037 0.00 0.00 0.00 2.18
660 693 7.055667 TCTTGCATTATACAGGAGTCTAAGG 57.944 40.000 0.00 0.00 0.00 2.69
661 694 5.215252 TGCATTATACAGGAGTCTAAGGC 57.785 43.478 0.00 0.00 41.53 4.35
662 695 4.040461 TGCATTATACAGGAGTCTAAGGCC 59.960 45.833 0.00 0.00 40.90 5.19
663 696 4.040461 GCATTATACAGGAGTCTAAGGCCA 59.960 45.833 5.01 0.00 37.82 5.36
664 697 5.542779 CATTATACAGGAGTCTAAGGCCAC 58.457 45.833 5.01 0.00 0.00 5.01
665 698 2.615986 TACAGGAGTCTAAGGCCACA 57.384 50.000 5.01 0.00 0.00 4.17
666 699 1.729586 ACAGGAGTCTAAGGCCACAA 58.270 50.000 5.01 0.00 0.00 3.33
667 700 1.625818 ACAGGAGTCTAAGGCCACAAG 59.374 52.381 5.01 0.00 0.00 3.16
668 701 0.615850 AGGAGTCTAAGGCCACAAGC 59.384 55.000 5.01 0.00 42.60 4.01
669 702 0.324943 GGAGTCTAAGGCCACAAGCA 59.675 55.000 5.01 0.00 46.50 3.91
670 703 1.443802 GAGTCTAAGGCCACAAGCAC 58.556 55.000 5.01 0.07 46.50 4.40
671 704 0.036875 AGTCTAAGGCCACAAGCACC 59.963 55.000 5.01 0.00 46.50 5.01
672 705 0.036875 GTCTAAGGCCACAAGCACCT 59.963 55.000 5.01 0.00 46.50 4.00
673 706 0.324943 TCTAAGGCCACAAGCACCTC 59.675 55.000 5.01 0.00 46.50 3.85
674 707 0.678048 CTAAGGCCACAAGCACCTCC 60.678 60.000 5.01 0.00 46.50 4.30
675 708 2.137177 TAAGGCCACAAGCACCTCCC 62.137 60.000 5.01 0.00 46.50 4.30
677 710 3.971702 GCCACAAGCACCTCCCCT 61.972 66.667 0.00 0.00 42.97 4.79
678 711 2.352805 CCACAAGCACCTCCCCTC 59.647 66.667 0.00 0.00 0.00 4.30
679 712 2.227036 CCACAAGCACCTCCCCTCT 61.227 63.158 0.00 0.00 0.00 3.69
680 713 0.909610 CCACAAGCACCTCCCCTCTA 60.910 60.000 0.00 0.00 0.00 2.43
681 714 0.984230 CACAAGCACCTCCCCTCTAA 59.016 55.000 0.00 0.00 0.00 2.10
682 715 1.351017 CACAAGCACCTCCCCTCTAAA 59.649 52.381 0.00 0.00 0.00 1.85
683 716 2.062636 ACAAGCACCTCCCCTCTAAAA 58.937 47.619 0.00 0.00 0.00 1.52
684 717 2.224793 ACAAGCACCTCCCCTCTAAAAC 60.225 50.000 0.00 0.00 0.00 2.43
685 718 1.742308 AGCACCTCCCCTCTAAAACA 58.258 50.000 0.00 0.00 0.00 2.83
686 719 2.062636 AGCACCTCCCCTCTAAAACAA 58.937 47.619 0.00 0.00 0.00 2.83
687 720 2.445525 AGCACCTCCCCTCTAAAACAAA 59.554 45.455 0.00 0.00 0.00 2.83
688 721 2.557056 GCACCTCCCCTCTAAAACAAAC 59.443 50.000 0.00 0.00 0.00 2.93
689 722 3.827722 CACCTCCCCTCTAAAACAAACA 58.172 45.455 0.00 0.00 0.00 2.83
690 723 3.568430 CACCTCCCCTCTAAAACAAACAC 59.432 47.826 0.00 0.00 0.00 3.32
691 724 3.462205 ACCTCCCCTCTAAAACAAACACT 59.538 43.478 0.00 0.00 0.00 3.55
692 725 4.079385 ACCTCCCCTCTAAAACAAACACTT 60.079 41.667 0.00 0.00 0.00 3.16
693 726 4.893524 CCTCCCCTCTAAAACAAACACTTT 59.106 41.667 0.00 0.00 0.00 2.66
694 727 5.362717 CCTCCCCTCTAAAACAAACACTTTT 59.637 40.000 0.00 0.00 0.00 2.27
695 728 6.215495 TCCCCTCTAAAACAAACACTTTTG 57.785 37.500 0.00 0.00 46.61 2.44
696 729 5.952947 TCCCCTCTAAAACAAACACTTTTGA 59.047 36.000 4.18 0.00 44.38 2.69
697 730 6.096282 TCCCCTCTAAAACAAACACTTTTGAG 59.904 38.462 4.18 0.00 44.38 3.02
698 731 6.096282 CCCCTCTAAAACAAACACTTTTGAGA 59.904 38.462 4.18 0.00 44.38 3.27
699 732 7.201911 CCCCTCTAAAACAAACACTTTTGAGAT 60.202 37.037 4.18 0.00 44.38 2.75
700 733 7.649306 CCCTCTAAAACAAACACTTTTGAGATG 59.351 37.037 4.18 0.00 44.38 2.90
701 734 7.168135 CCTCTAAAACAAACACTTTTGAGATGC 59.832 37.037 4.18 0.00 44.38 3.91
702 735 6.978080 TCTAAAACAAACACTTTTGAGATGCC 59.022 34.615 4.18 0.00 44.38 4.40
703 736 5.343307 AAACAAACACTTTTGAGATGCCT 57.657 34.783 4.18 0.00 44.38 4.75
704 737 4.574599 ACAAACACTTTTGAGATGCCTC 57.425 40.909 4.18 0.00 44.38 4.70
705 738 3.319122 ACAAACACTTTTGAGATGCCTCC 59.681 43.478 4.18 0.00 44.38 4.30
706 739 2.206576 ACACTTTTGAGATGCCTCCC 57.793 50.000 0.00 0.00 38.66 4.30
707 740 1.089920 CACTTTTGAGATGCCTCCCG 58.910 55.000 0.00 0.00 38.66 5.14
708 741 0.035056 ACTTTTGAGATGCCTCCCGG 60.035 55.000 0.00 0.00 38.66 5.73
709 742 0.749454 CTTTTGAGATGCCTCCCGGG 60.749 60.000 16.85 16.85 38.66 5.73
710 743 1.204786 TTTTGAGATGCCTCCCGGGA 61.205 55.000 25.06 25.06 38.66 5.14
711 744 1.626356 TTTGAGATGCCTCCCGGGAG 61.626 60.000 39.33 39.33 38.66 4.30
712 745 3.934962 GAGATGCCTCCCGGGAGC 61.935 72.222 40.60 33.55 40.69 4.70
713 746 4.804420 AGATGCCTCCCGGGAGCA 62.804 66.667 40.60 37.20 39.81 4.26
714 747 3.564218 GATGCCTCCCGGGAGCAT 61.564 66.667 38.57 38.57 40.69 3.79
715 748 3.839353 GATGCCTCCCGGGAGCATG 62.839 68.421 40.94 31.41 40.69 4.06
717 750 4.864334 GCCTCCCGGGAGCATGTG 62.864 72.222 40.60 28.22 40.69 3.21
718 751 4.864334 CCTCCCGGGAGCATGTGC 62.864 72.222 40.60 0.00 40.69 4.57
732 765 4.783621 GTGCTCTGGGGCGCATGA 62.784 66.667 10.83 4.23 41.71 3.07
733 766 4.478371 TGCTCTGGGGCGCATGAG 62.478 66.667 10.83 19.38 34.52 2.90
735 768 4.478371 CTCTGGGGCGCATGAGCA 62.478 66.667 23.18 1.57 42.27 4.26
736 769 3.769369 CTCTGGGGCGCATGAGCAT 62.769 63.158 23.18 0.00 42.27 3.79
737 770 3.592814 CTGGGGCGCATGAGCATG 61.593 66.667 23.18 6.11 42.27 4.06
751 784 4.068280 CATGCCCATGCGCAGATA 57.932 55.556 18.32 0.09 43.26 1.98
752 785 2.563297 CATGCCCATGCGCAGATAT 58.437 52.632 18.32 2.80 43.26 1.63
753 786 0.885879 CATGCCCATGCGCAGATATT 59.114 50.000 18.32 0.00 43.26 1.28
754 787 1.271379 CATGCCCATGCGCAGATATTT 59.729 47.619 18.32 0.00 43.26 1.40
755 788 1.401761 TGCCCATGCGCAGATATTTT 58.598 45.000 18.32 0.00 41.78 1.82
756 789 1.067364 TGCCCATGCGCAGATATTTTG 59.933 47.619 18.32 7.13 41.78 2.44
757 790 1.774639 CCCATGCGCAGATATTTTGC 58.225 50.000 18.32 3.71 38.18 3.68
758 791 1.067364 CCCATGCGCAGATATTTTGCA 59.933 47.619 18.32 3.81 41.59 4.08
759 792 2.288579 CCCATGCGCAGATATTTTGCAT 60.289 45.455 18.32 5.69 46.43 3.96
760 793 3.057386 CCCATGCGCAGATATTTTGCATA 60.057 43.478 18.32 0.00 43.89 3.14
761 794 3.916172 CCATGCGCAGATATTTTGCATAC 59.084 43.478 18.32 3.64 43.89 2.39
762 795 4.538917 CATGCGCAGATATTTTGCATACA 58.461 39.130 18.32 7.89 43.89 2.29
763 796 3.951306 TGCGCAGATATTTTGCATACAC 58.049 40.909 5.66 0.00 41.59 2.90
764 797 2.966708 GCGCAGATATTTTGCATACACG 59.033 45.455 0.30 0.00 41.59 4.49
765 798 3.303066 GCGCAGATATTTTGCATACACGA 60.303 43.478 0.30 0.00 41.59 4.35
766 799 4.611355 GCGCAGATATTTTGCATACACGAT 60.611 41.667 0.30 0.00 41.59 3.73
767 800 5.075448 CGCAGATATTTTGCATACACGATC 58.925 41.667 12.02 0.00 41.59 3.69
768 801 5.385617 GCAGATATTTTGCATACACGATCC 58.614 41.667 7.93 0.00 41.17 3.36
769 802 5.049474 GCAGATATTTTGCATACACGATCCA 60.049 40.000 7.93 0.00 41.17 3.41
770 803 6.348786 GCAGATATTTTGCATACACGATCCAT 60.349 38.462 7.93 0.00 41.17 3.41
771 804 7.587629 CAGATATTTTGCATACACGATCCATT 58.412 34.615 0.00 0.00 0.00 3.16
772 805 8.077991 CAGATATTTTGCATACACGATCCATTT 58.922 33.333 0.00 0.00 0.00 2.32
773 806 8.632679 AGATATTTTGCATACACGATCCATTTT 58.367 29.630 0.00 0.00 0.00 1.82
774 807 8.801715 ATATTTTGCATACACGATCCATTTTC 57.198 30.769 0.00 0.00 0.00 2.29
775 808 5.895636 TTTGCATACACGATCCATTTTCT 57.104 34.783 0.00 0.00 0.00 2.52
776 809 4.880886 TGCATACACGATCCATTTTCTG 57.119 40.909 0.00 0.00 0.00 3.02
777 810 4.512484 TGCATACACGATCCATTTTCTGA 58.488 39.130 0.00 0.00 0.00 3.27
778 811 4.332543 TGCATACACGATCCATTTTCTGAC 59.667 41.667 0.00 0.00 0.00 3.51
779 812 4.260784 GCATACACGATCCATTTTCTGACC 60.261 45.833 0.00 0.00 0.00 4.02
780 813 2.346803 ACACGATCCATTTTCTGACCG 58.653 47.619 0.00 0.00 0.00 4.79
781 814 1.062587 CACGATCCATTTTCTGACCGC 59.937 52.381 0.00 0.00 0.00 5.68
782 815 0.657840 CGATCCATTTTCTGACCGCC 59.342 55.000 0.00 0.00 0.00 6.13
783 816 0.657840 GATCCATTTTCTGACCGCCG 59.342 55.000 0.00 0.00 0.00 6.46
784 817 0.251916 ATCCATTTTCTGACCGCCGA 59.748 50.000 0.00 0.00 0.00 5.54
785 818 0.672401 TCCATTTTCTGACCGCCGAC 60.672 55.000 0.00 0.00 0.00 4.79
786 819 0.953471 CCATTTTCTGACCGCCGACA 60.953 55.000 0.00 0.00 0.00 4.35
787 820 0.165944 CATTTTCTGACCGCCGACAC 59.834 55.000 0.00 0.00 0.00 3.67
788 821 0.953960 ATTTTCTGACCGCCGACACC 60.954 55.000 0.00 0.00 0.00 4.16
789 822 2.999739 TTTTCTGACCGCCGACACCC 63.000 60.000 0.00 0.00 0.00 4.61
805 838 1.338136 ACCCACGAGTCCCATCCATC 61.338 60.000 0.00 0.00 0.00 3.51
851 884 4.477975 CGCCCGTCTGACGACTCC 62.478 72.222 29.93 13.84 46.05 3.85
922 957 2.224719 GCTGCAAGGTATCCATCCATCT 60.225 50.000 0.00 0.00 0.00 2.90
923 958 3.409570 CTGCAAGGTATCCATCCATCTG 58.590 50.000 0.00 0.00 0.00 2.90
924 959 2.779430 TGCAAGGTATCCATCCATCTGT 59.221 45.455 0.00 0.00 0.00 3.41
925 960 3.181451 TGCAAGGTATCCATCCATCTGTC 60.181 47.826 0.00 0.00 0.00 3.51
926 961 3.808618 GCAAGGTATCCATCCATCTGTCC 60.809 52.174 0.00 0.00 0.00 4.02
927 962 2.625639 AGGTATCCATCCATCTGTCCC 58.374 52.381 0.00 0.00 0.00 4.46
928 963 2.183210 AGGTATCCATCCATCTGTCCCT 59.817 50.000 0.00 0.00 0.00 4.20
929 964 2.569404 GGTATCCATCCATCTGTCCCTC 59.431 54.545 0.00 0.00 0.00 4.30
951 997 2.603473 CCCGTCCTCTCCACCACA 60.603 66.667 0.00 0.00 0.00 4.17
956 1002 1.229625 TCCTCTCCACCACAGCCAT 60.230 57.895 0.00 0.00 0.00 4.40
1017 1063 1.207791 GAATGCCTCCAGGGAAGAGA 58.792 55.000 0.00 0.00 39.60 3.10
1410 1462 0.467384 CCTCCTCGTACCTCGACCTA 59.533 60.000 0.00 0.00 44.01 3.08
1491 1543 5.356190 CCTGCAGCAGAAATTTCTTGATCTA 59.644 40.000 24.90 3.32 34.74 1.98
1494 1546 5.163683 GCAGCAGAAATTTCTTGATCTAGCA 60.164 40.000 18.16 0.00 34.74 3.49
1557 1609 5.542779 GACATCAGTGTTGGTAGGATATCC 58.457 45.833 14.41 14.41 39.09 2.59
1627 1679 3.737559 ATTGCTGGGTCCATGTTTCTA 57.262 42.857 0.00 0.00 0.00 2.10
1707 1768 1.326213 ACATGGCGCTGCTAGAGACT 61.326 55.000 7.64 0.00 0.00 3.24
1830 1894 2.267324 GGTGCTCTCTCAGGTGCC 59.733 66.667 0.00 0.00 0.00 5.01
2001 2095 5.527214 CCTTAGATCATCAATTTGCGTACCA 59.473 40.000 0.00 0.00 0.00 3.25
2151 2255 2.038952 TGACTTGGATGCACTAGCTTGT 59.961 45.455 0.00 0.00 42.74 3.16
2193 2297 5.415701 AGTTCTAGAGAAGCTCACTCTTCAG 59.584 44.000 22.37 16.47 43.64 3.02
2264 2369 7.148885 GCTACACTGCTGAAGTTATTATCGATC 60.149 40.741 0.00 0.00 36.83 3.69
2348 2489 0.179124 GCTACAGTTCAGCGGAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
2536 2694 4.456911 TGAAAGCAAGCAGTGAAGAATAGG 59.543 41.667 0.00 0.00 0.00 2.57
2562 2726 6.349300 TCCTGAATTATGTAGGAAGAACAGC 58.651 40.000 0.00 0.00 37.66 4.40
2563 2727 5.529060 CCTGAATTATGTAGGAAGAACAGCC 59.471 44.000 0.00 0.00 33.33 4.85
2595 2760 3.455543 ACCAAATTATTTCAGGCATGGGG 59.544 43.478 0.00 0.00 0.00 4.96
2687 2873 6.024049 GCTTTAGTTTAGCTGTGTTGCATAG 58.976 40.000 0.00 0.00 35.74 2.23
2784 2971 9.973661 TTGAATCAATTAATTCAGAGTAGGGAA 57.026 29.630 4.23 0.00 44.23 3.97
2790 2977 9.717942 CAATTAATTCAGAGTAGGGAATCTAGG 57.282 37.037 0.00 0.00 32.81 3.02
2791 2978 7.857404 TTAATTCAGAGTAGGGAATCTAGGG 57.143 40.000 0.00 0.00 32.81 3.53
2860 3047 5.181748 ACTCAAGTTCTGCAGGAATACATC 58.818 41.667 15.13 0.00 36.24 3.06
2866 3053 5.352569 AGTTCTGCAGGAATACATCTTTTCG 59.647 40.000 15.13 0.00 36.24 3.46
2870 3057 3.873952 GCAGGAATACATCTTTTCGCTCT 59.126 43.478 0.00 0.00 0.00 4.09
2884 3071 8.614994 TCTTTTCGCTCTTTTTGTTTTAGAAG 57.385 30.769 0.00 0.00 0.00 2.85
2886 3073 8.973835 TTTTCGCTCTTTTTGTTTTAGAAGAA 57.026 26.923 0.00 0.00 0.00 2.52
2971 3158 2.629051 GGCTAATGTTACTCCGCACTT 58.371 47.619 0.00 0.00 0.00 3.16
2978 3165 3.585862 TGTTACTCCGCACTTGATTCTC 58.414 45.455 0.00 0.00 0.00 2.87
2979 3166 2.930682 GTTACTCCGCACTTGATTCTCC 59.069 50.000 0.00 0.00 0.00 3.71
2987 3174 2.286831 GCACTTGATTCTCCATCATGCG 60.287 50.000 0.00 0.00 41.82 4.73
3098 3285 0.110486 TGTTTGCTCCTGGGAAGTCC 59.890 55.000 0.00 0.00 0.00 3.85
3123 3310 9.581099 CCCCACTGTTTACATAACATATTTTTC 57.419 33.333 0.00 0.00 0.00 2.29
3192 3379 6.071952 GCCATGATTCCTTACTTCACTTTTCA 60.072 38.462 0.00 0.00 0.00 2.69
3244 3496 8.481314 AGATGCTCTCTTGTTATATTGTCAGAA 58.519 33.333 0.00 0.00 0.00 3.02
3260 3512 5.126067 TGTCAGAATAAGCTAGAAATGGCC 58.874 41.667 0.00 0.00 0.00 5.36
3264 3516 5.934625 CAGAATAAGCTAGAAATGGCCGTAT 59.065 40.000 0.00 0.00 0.00 3.06
3268 3520 3.733337 AGCTAGAAATGGCCGTATGAAG 58.267 45.455 0.00 0.00 0.00 3.02
3338 3600 7.454260 AAAGTGAATGTCCTTCAATCTTACC 57.546 36.000 0.00 0.00 45.27 2.85
3368 3632 7.337942 GTCTGTTCCAGTATCTTCATTTCCATT 59.662 37.037 0.00 0.00 32.61 3.16
3488 3752 0.981183 AAGATGTGGGGCGTCAGTTA 59.019 50.000 0.00 0.00 35.60 2.24
3489 3753 0.537188 AGATGTGGGGCGTCAGTTAG 59.463 55.000 0.00 0.00 35.60 2.34
3491 3755 0.249398 ATGTGGGGCGTCAGTTAGTC 59.751 55.000 0.00 0.00 0.00 2.59
3493 3757 2.288025 TGGGGCGTCAGTTAGTCCC 61.288 63.158 0.00 0.00 36.25 4.46
3542 3828 2.102252 GCCATTGTGACAAGGTTTCCAA 59.898 45.455 9.23 0.00 0.00 3.53
3577 3867 7.394016 ACATGTGTATCTGATACCAGTTTTGA 58.606 34.615 21.63 1.52 41.16 2.69
3611 3902 6.721208 TCAAGCCAAAAGAGACCAGAATAATT 59.279 34.615 0.00 0.00 0.00 1.40
3630 3921 4.530710 ATTTTGCACATGAGATTGCTGT 57.469 36.364 0.00 0.00 39.62 4.40
3652 3944 2.067013 GTTGTTCGTAGAACAGGAGCC 58.933 52.381 14.13 0.00 45.90 4.70
3712 4008 7.834068 AGCTCATGTAATTAACACTGTACTG 57.166 36.000 0.00 0.00 42.09 2.74
3713 4009 7.386851 AGCTCATGTAATTAACACTGTACTGT 58.613 34.615 0.00 0.00 42.09 3.55
3714 4010 8.528643 AGCTCATGTAATTAACACTGTACTGTA 58.471 33.333 4.96 0.00 42.09 2.74
3715 4011 9.146984 GCTCATGTAATTAACACTGTACTGTAA 57.853 33.333 4.96 0.00 42.09 2.41
3724 4020 9.784680 ATTAACACTGTACTGTAACTATCTTCG 57.215 33.333 4.96 0.00 0.00 3.79
3725 4021 5.638783 ACACTGTACTGTAACTATCTTCGC 58.361 41.667 4.96 0.00 0.00 4.70
3726 4022 5.182570 ACACTGTACTGTAACTATCTTCGCA 59.817 40.000 4.96 0.00 0.00 5.10
3727 4023 6.090783 CACTGTACTGTAACTATCTTCGCAA 58.909 40.000 4.96 0.00 0.00 4.85
3728 4024 6.584942 CACTGTACTGTAACTATCTTCGCAAA 59.415 38.462 4.96 0.00 0.00 3.68
3729 4025 7.115805 CACTGTACTGTAACTATCTTCGCAAAA 59.884 37.037 4.96 0.00 0.00 2.44
3730 4026 7.654520 ACTGTACTGTAACTATCTTCGCAAAAA 59.345 33.333 3.21 0.00 0.00 1.94
3801 4097 5.011023 TCTCTTTTGGCCCTCATTTTTCTTC 59.989 40.000 0.00 0.00 0.00 2.87
3845 4142 3.547613 CGGTGTAGAATCCGCAGTAGTAC 60.548 52.174 0.00 0.00 40.28 2.73
3846 4143 3.631227 GGTGTAGAATCCGCAGTAGTACT 59.369 47.826 0.00 0.00 0.00 2.73
3847 4144 4.097589 GGTGTAGAATCCGCAGTAGTACTT 59.902 45.833 0.00 0.00 0.00 2.24
3848 4145 5.035443 GTGTAGAATCCGCAGTAGTACTTG 58.965 45.833 0.00 0.00 0.00 3.16
3903 4200 7.329588 AGTTGGATTTGGTTTTATCGTATCC 57.670 36.000 0.00 0.00 0.00 2.59
3906 4203 5.298276 TGGATTTGGTTTTATCGTATCCTGC 59.702 40.000 0.00 0.00 33.04 4.85
3921 4219 1.207811 TCCTGCGAATCTCTGATGCAA 59.792 47.619 0.00 0.00 34.78 4.08
3926 4224 5.063180 TGCGAATCTCTGATGCAATTTTT 57.937 34.783 0.00 0.00 31.69 1.94
3930 4228 5.514204 CGAATCTCTGATGCAATTTTTGTCC 59.486 40.000 0.00 0.00 0.00 4.02
3935 4233 5.472148 TCTGATGCAATTTTTGTCCATGTC 58.528 37.500 0.00 0.00 0.00 3.06
3936 4234 5.010820 TCTGATGCAATTTTTGTCCATGTCA 59.989 36.000 0.00 0.00 0.00 3.58
3951 4249 6.660521 TGTCCATGTCAAGAATTATTCAGCTT 59.339 34.615 7.74 0.00 0.00 3.74
3958 4256 8.049117 TGTCAAGAATTATTCAGCTTATGGACT 58.951 33.333 7.74 0.00 0.00 3.85
3961 4259 5.767168 AGAATTATTCAGCTTATGGACTGGC 59.233 40.000 7.74 0.00 34.57 4.85
3967 4265 1.139853 AGCTTATGGACTGGCTAGTGC 59.860 52.381 14.98 14.98 44.65 4.40
3984 4282 4.762956 AGTGCTCTCTTTGCAATTCTTC 57.237 40.909 0.00 0.00 42.41 2.87
3987 4285 4.916249 GTGCTCTCTTTGCAATTCTTCTTG 59.084 41.667 0.00 0.00 42.41 3.02
3996 4294 0.804989 AATTCTTCTTGGCTTCGGCG 59.195 50.000 0.00 0.00 42.91 6.46
4002 4300 2.981560 CTTGGCTTCGGCGCATGTT 61.982 57.895 10.83 0.00 42.91 2.71
4018 4316 4.146961 CGCATGTTTTGTTCTGTTGTGATC 59.853 41.667 0.00 0.00 0.00 2.92
4029 6317 3.996363 TCTGTTGTGATCTGATCCGTTTG 59.004 43.478 14.71 2.14 0.00 2.93
4034 6322 6.092122 TGTTGTGATCTGATCCGTTTGTTATC 59.908 38.462 14.71 0.00 0.00 1.75
4039 6327 5.914898 TCTGATCCGTTTGTTATCTCTCA 57.085 39.130 0.00 0.00 0.00 3.27
4076 6395 2.799017 TGCATGGAAGAGTGCAGAAAT 58.201 42.857 0.00 0.00 45.60 2.17
4077 6396 2.751259 TGCATGGAAGAGTGCAGAAATC 59.249 45.455 0.00 0.00 45.60 2.17
4091 6410 3.424962 GCAGAAATCGGTGTTAAGAGTGC 60.425 47.826 0.00 0.00 0.00 4.40
4111 6430 5.525378 AGTGCGGAAATTCAGAGATTACATC 59.475 40.000 0.00 0.00 0.00 3.06
4127 6446 1.203523 ACATCTCGAGTCAGTGAAGGC 59.796 52.381 13.13 0.00 0.00 4.35
4130 6449 0.108898 CTCGAGTCAGTGAAGGCCAG 60.109 60.000 5.01 0.00 0.00 4.85
4133 6452 0.952984 GAGTCAGTGAAGGCCAGCAC 60.953 60.000 17.45 17.45 35.30 4.40
4154 6473 6.654582 AGCACATCAATAACACTACATTCACA 59.345 34.615 0.00 0.00 0.00 3.58
4157 6476 7.911727 CACATCAATAACACTACATTCACATGG 59.088 37.037 0.00 0.00 34.27 3.66
4158 6477 7.611467 ACATCAATAACACTACATTCACATGGT 59.389 33.333 0.00 0.00 34.27 3.55
4161 6480 2.436417 ACACTACATTCACATGGTGCC 58.564 47.619 0.00 0.00 34.27 5.01
4211 6530 6.357367 AGAACATTCACATTACTCCCCATAC 58.643 40.000 0.00 0.00 0.00 2.39
4213 6532 5.684704 ACATTCACATTACTCCCCATACTG 58.315 41.667 0.00 0.00 0.00 2.74
4215 6534 5.614324 TTCACATTACTCCCCATACTGAG 57.386 43.478 0.00 0.00 34.73 3.35
4216 6535 4.878968 TCACATTACTCCCCATACTGAGA 58.121 43.478 0.00 0.00 32.84 3.27
4225 6544 3.055094 TCCCCATACTGAGAGCAAAAGAC 60.055 47.826 0.00 0.00 0.00 3.01
4234 6553 4.517285 TGAGAGCAAAAGACACTGAAACT 58.483 39.130 0.00 0.00 0.00 2.66
4237 6556 5.128919 AGAGCAAAAGACACTGAAACTGAT 58.871 37.500 0.00 0.00 0.00 2.90
4238 6557 6.291377 AGAGCAAAAGACACTGAAACTGATA 58.709 36.000 0.00 0.00 0.00 2.15
4263 6936 8.920509 ACTAACAAAACTTGAAACAACCATAC 57.079 30.769 0.00 0.00 0.00 2.39
4281 6954 1.957186 CTCGCCGTTCGTCCCAAAA 60.957 57.895 0.00 0.00 39.67 2.44
4282 6955 1.897398 CTCGCCGTTCGTCCCAAAAG 61.897 60.000 0.00 0.00 39.67 2.27
4283 6956 2.248835 CGCCGTTCGTCCCAAAAGT 61.249 57.895 0.00 0.00 0.00 2.66
4301 6974 0.036875 GTAGCACCCTTCACTTGCCT 59.963 55.000 0.00 0.00 36.91 4.75
4372 7045 4.057428 GGTCGGCTCACGCTCACT 62.057 66.667 0.00 0.00 43.86 3.41
4373 7046 2.505118 GTCGGCTCACGCTCACTC 60.505 66.667 0.00 0.00 43.86 3.51
4374 7047 2.673341 TCGGCTCACGCTCACTCT 60.673 61.111 0.00 0.00 43.86 3.24
4375 7048 2.505777 CGGCTCACGCTCACTCTG 60.506 66.667 0.00 0.00 36.09 3.35
4376 7049 2.813042 GGCTCACGCTCACTCTGC 60.813 66.667 0.00 0.00 36.09 4.26
4377 7050 2.048784 GCTCACGCTCACTCTGCA 60.049 61.111 0.00 0.00 0.00 4.41
4392 7099 2.032681 GCAGAGGTTGTTCGGCCT 59.967 61.111 0.00 0.00 37.91 5.19
4449 7156 2.125952 GGCGTTCTTGCAATGGCC 60.126 61.111 0.00 7.02 40.13 5.36
4450 7157 2.639327 GGCGTTCTTGCAATGGCCT 61.639 57.895 17.76 0.00 40.13 5.19
4452 7159 0.733909 GCGTTCTTGCAATGGCCTTC 60.734 55.000 3.32 0.00 40.13 3.46
4453 7160 0.883833 CGTTCTTGCAATGGCCTTCT 59.116 50.000 3.32 0.00 40.13 2.85
4454 7161 1.135575 CGTTCTTGCAATGGCCTTCTC 60.136 52.381 3.32 0.00 40.13 2.87
4455 7162 1.203287 GTTCTTGCAATGGCCTTCTCC 59.797 52.381 3.32 0.00 40.13 3.71
4456 7163 0.700564 TCTTGCAATGGCCTTCTCCT 59.299 50.000 3.32 0.00 40.13 3.69
4457 7164 1.101331 CTTGCAATGGCCTTCTCCTC 58.899 55.000 3.32 0.00 40.13 3.71
4458 7165 0.700564 TTGCAATGGCCTTCTCCTCT 59.299 50.000 3.32 0.00 40.13 3.69
4459 7166 0.700564 TGCAATGGCCTTCTCCTCTT 59.299 50.000 3.32 0.00 40.13 2.85
4460 7167 1.340405 TGCAATGGCCTTCTCCTCTTC 60.340 52.381 3.32 0.00 40.13 2.87
4461 7168 1.661341 CAATGGCCTTCTCCTCTTCG 58.339 55.000 3.32 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.478134 GGCAAGAATCATCGATCTTCCG 59.522 50.000 11.73 6.71 0.00 4.30
6 7 5.046087 TGAGATATGGGCAAGAATCATCGAT 60.046 40.000 0.00 0.00 0.00 3.59
15 16 2.707791 CCTCCTTGAGATATGGGCAAGA 59.292 50.000 0.00 0.00 41.03 3.02
81 83 0.539438 GGTGGTCCATGGCACTTCAA 60.539 55.000 18.47 0.00 0.00 2.69
185 187 2.820059 TATCAGCATGGGAACTAGCG 57.180 50.000 0.00 0.00 36.16 4.26
191 193 5.939447 TGTAACATGATATCAGCATGGGAA 58.061 37.500 11.78 0.00 45.62 3.97
219 221 3.978718 GGGCTTCAGCACTTATTGATC 57.021 47.619 0.30 0.00 42.27 2.92
343 345 4.723285 TGGAGGAGATGATGAAGGAATTGA 59.277 41.667 0.00 0.00 0.00 2.57
344 346 5.045012 TGGAGGAGATGATGAAGGAATTG 57.955 43.478 0.00 0.00 0.00 2.32
346 348 4.725810 ACTTGGAGGAGATGATGAAGGAAT 59.274 41.667 0.00 0.00 0.00 3.01
347 349 4.107072 ACTTGGAGGAGATGATGAAGGAA 58.893 43.478 0.00 0.00 0.00 3.36
350 352 4.880696 GGAAACTTGGAGGAGATGATGAAG 59.119 45.833 0.00 0.00 0.00 3.02
423 441 4.323569 AGATCCTACTCCTTCTGTGACA 57.676 45.455 0.00 0.00 0.00 3.58
437 455 4.322499 GGTTGGTGTTTCGAGAAGATCCTA 60.322 45.833 0.00 0.00 0.00 2.94
439 457 2.742589 GGTTGGTGTTTCGAGAAGATCC 59.257 50.000 0.00 0.00 0.00 3.36
455 478 3.480133 CCGAGGGGCTAGGGTTGG 61.480 72.222 0.00 0.00 0.00 3.77
469 495 0.029433 CGTTGATCTCTCATCGCCGA 59.971 55.000 0.00 0.00 37.66 5.54
483 509 2.577059 CTAAGGCCCGAGCGTTGA 59.423 61.111 7.14 0.00 46.12 3.18
488 514 1.674322 TTGTTGCTAAGGCCCGAGC 60.674 57.895 17.70 17.70 39.25 5.03
499 525 2.914097 GGCAGCCCTGTTGTTGCT 60.914 61.111 0.00 0.00 36.79 3.91
503 529 2.527951 GATCGAGGCAGCCCTGTTGT 62.528 60.000 8.22 0.00 43.12 3.32
553 581 3.288964 ACGTTGAGATCTATCGTCCCTT 58.711 45.455 11.67 0.00 0.00 3.95
585 616 1.915141 TAGGGTTTCGTTCCTCTCGT 58.085 50.000 0.00 0.00 34.75 4.18
629 662 8.353423 ACTCCTGTATAATGCAAGATGTTTTT 57.647 30.769 0.00 0.00 0.00 1.94
630 663 7.831193 AGACTCCTGTATAATGCAAGATGTTTT 59.169 33.333 0.00 0.00 0.00 2.43
631 664 7.341805 AGACTCCTGTATAATGCAAGATGTTT 58.658 34.615 0.00 0.00 0.00 2.83
632 665 6.893583 AGACTCCTGTATAATGCAAGATGTT 58.106 36.000 0.00 0.00 0.00 2.71
633 666 6.491714 AGACTCCTGTATAATGCAAGATGT 57.508 37.500 0.00 0.00 0.00 3.06
634 667 7.601886 CCTTAGACTCCTGTATAATGCAAGATG 59.398 40.741 0.00 0.00 30.71 2.90
635 668 7.675062 CCTTAGACTCCTGTATAATGCAAGAT 58.325 38.462 0.00 0.00 30.71 2.40
636 669 6.463049 GCCTTAGACTCCTGTATAATGCAAGA 60.463 42.308 0.00 0.00 39.53 3.02
637 670 5.698545 GCCTTAGACTCCTGTATAATGCAAG 59.301 44.000 0.00 0.00 39.53 4.01
638 671 5.454755 GGCCTTAGACTCCTGTATAATGCAA 60.455 44.000 0.00 0.00 40.62 4.08
639 672 4.040461 GGCCTTAGACTCCTGTATAATGCA 59.960 45.833 0.00 0.00 40.62 3.96
640 673 4.040461 TGGCCTTAGACTCCTGTATAATGC 59.960 45.833 3.32 0.00 39.25 3.56
641 674 5.070446 TGTGGCCTTAGACTCCTGTATAATG 59.930 44.000 3.32 0.00 30.71 1.90
642 675 5.216622 TGTGGCCTTAGACTCCTGTATAAT 58.783 41.667 3.32 0.00 30.71 1.28
643 676 4.616553 TGTGGCCTTAGACTCCTGTATAA 58.383 43.478 3.32 0.00 0.00 0.98
644 677 4.259933 TGTGGCCTTAGACTCCTGTATA 57.740 45.455 3.32 0.00 0.00 1.47
645 678 3.116096 TGTGGCCTTAGACTCCTGTAT 57.884 47.619 3.32 0.00 0.00 2.29
646 679 2.615986 TGTGGCCTTAGACTCCTGTA 57.384 50.000 3.32 0.00 0.00 2.74
647 680 1.625818 CTTGTGGCCTTAGACTCCTGT 59.374 52.381 3.32 0.00 0.00 4.00
648 681 1.677217 GCTTGTGGCCTTAGACTCCTG 60.677 57.143 3.32 0.00 34.27 3.86
649 682 0.615850 GCTTGTGGCCTTAGACTCCT 59.384 55.000 3.32 0.00 34.27 3.69
650 683 0.324943 TGCTTGTGGCCTTAGACTCC 59.675 55.000 3.32 0.00 40.92 3.85
651 684 1.443802 GTGCTTGTGGCCTTAGACTC 58.556 55.000 3.32 0.00 40.92 3.36
652 685 0.036875 GGTGCTTGTGGCCTTAGACT 59.963 55.000 3.32 0.00 40.92 3.24
653 686 0.036875 AGGTGCTTGTGGCCTTAGAC 59.963 55.000 3.32 0.00 40.92 2.59
654 687 0.324943 GAGGTGCTTGTGGCCTTAGA 59.675 55.000 3.32 0.00 40.92 2.10
655 688 0.678048 GGAGGTGCTTGTGGCCTTAG 60.678 60.000 3.32 0.00 40.92 2.18
656 689 1.378762 GGAGGTGCTTGTGGCCTTA 59.621 57.895 3.32 0.00 40.92 2.69
657 690 2.116125 GGAGGTGCTTGTGGCCTT 59.884 61.111 3.32 0.00 40.92 4.35
658 691 3.971702 GGGAGGTGCTTGTGGCCT 61.972 66.667 3.32 0.00 40.92 5.19
660 693 3.927481 GAGGGGAGGTGCTTGTGGC 62.927 68.421 0.00 0.00 42.22 5.01
661 694 0.909610 TAGAGGGGAGGTGCTTGTGG 60.910 60.000 0.00 0.00 0.00 4.17
662 695 0.984230 TTAGAGGGGAGGTGCTTGTG 59.016 55.000 0.00 0.00 0.00 3.33
663 696 1.742308 TTTAGAGGGGAGGTGCTTGT 58.258 50.000 0.00 0.00 0.00 3.16
664 697 2.224769 TGTTTTAGAGGGGAGGTGCTTG 60.225 50.000 0.00 0.00 0.00 4.01
665 698 2.062636 TGTTTTAGAGGGGAGGTGCTT 58.937 47.619 0.00 0.00 0.00 3.91
666 699 1.742308 TGTTTTAGAGGGGAGGTGCT 58.258 50.000 0.00 0.00 0.00 4.40
667 700 2.557056 GTTTGTTTTAGAGGGGAGGTGC 59.443 50.000 0.00 0.00 0.00 5.01
668 701 3.568430 GTGTTTGTTTTAGAGGGGAGGTG 59.432 47.826 0.00 0.00 0.00 4.00
669 702 3.462205 AGTGTTTGTTTTAGAGGGGAGGT 59.538 43.478 0.00 0.00 0.00 3.85
670 703 4.100279 AGTGTTTGTTTTAGAGGGGAGG 57.900 45.455 0.00 0.00 0.00 4.30
671 704 6.096282 TCAAAAGTGTTTGTTTTAGAGGGGAG 59.904 38.462 0.00 0.00 43.90 4.30
672 705 5.952947 TCAAAAGTGTTTGTTTTAGAGGGGA 59.047 36.000 0.00 0.00 43.90 4.81
673 706 6.096282 TCTCAAAAGTGTTTGTTTTAGAGGGG 59.904 38.462 0.00 0.00 43.90 4.79
674 707 7.095695 TCTCAAAAGTGTTTGTTTTAGAGGG 57.904 36.000 0.00 0.00 43.90 4.30
675 708 7.168135 GCATCTCAAAAGTGTTTGTTTTAGAGG 59.832 37.037 0.00 0.00 43.90 3.69
676 709 7.168135 GGCATCTCAAAAGTGTTTGTTTTAGAG 59.832 37.037 0.00 0.00 43.90 2.43
677 710 6.978080 GGCATCTCAAAAGTGTTTGTTTTAGA 59.022 34.615 0.00 0.00 43.90 2.10
678 711 6.980397 AGGCATCTCAAAAGTGTTTGTTTTAG 59.020 34.615 0.00 0.00 43.90 1.85
679 712 6.872920 AGGCATCTCAAAAGTGTTTGTTTTA 58.127 32.000 0.00 0.00 43.90 1.52
680 713 5.733676 AGGCATCTCAAAAGTGTTTGTTTT 58.266 33.333 0.00 0.00 43.90 2.43
681 714 5.343307 AGGCATCTCAAAAGTGTTTGTTT 57.657 34.783 0.00 0.00 43.90 2.83
682 715 4.202151 GGAGGCATCTCAAAAGTGTTTGTT 60.202 41.667 0.00 0.00 43.90 2.83
683 716 3.319122 GGAGGCATCTCAAAAGTGTTTGT 59.681 43.478 0.00 0.00 43.90 2.83
684 717 3.305608 GGGAGGCATCTCAAAAGTGTTTG 60.306 47.826 0.00 0.00 44.71 2.93
685 718 2.893489 GGGAGGCATCTCAAAAGTGTTT 59.107 45.455 0.00 0.00 41.69 2.83
686 719 2.519013 GGGAGGCATCTCAAAAGTGTT 58.481 47.619 0.00 0.00 41.69 3.32
687 720 1.611673 CGGGAGGCATCTCAAAAGTGT 60.612 52.381 0.00 0.00 41.69 3.55
688 721 1.089920 CGGGAGGCATCTCAAAAGTG 58.910 55.000 0.00 0.00 41.69 3.16
689 722 3.558674 CGGGAGGCATCTCAAAAGT 57.441 52.632 0.00 0.00 41.69 2.66
701 734 4.864334 GCACATGCTCCCGGGAGG 62.864 72.222 43.88 31.94 43.98 4.30
718 751 3.769369 ATGCTCATGCGCCCCAGAG 62.769 63.158 4.18 8.04 43.34 3.35
719 752 3.800833 ATGCTCATGCGCCCCAGA 61.801 61.111 4.18 0.00 43.34 3.86
720 753 3.592814 CATGCTCATGCGCCCCAG 61.593 66.667 4.18 0.00 43.34 4.45
734 767 0.885879 AATATCTGCGCATGGGCATG 59.114 50.000 34.08 26.30 42.99 4.06
735 768 1.624336 AAATATCTGCGCATGGGCAT 58.376 45.000 34.08 23.87 42.99 4.40
736 769 1.067364 CAAAATATCTGCGCATGGGCA 59.933 47.619 32.25 32.25 41.24 5.36
737 770 1.774639 CAAAATATCTGCGCATGGGC 58.225 50.000 26.55 26.55 0.00 5.36
738 771 1.067364 TGCAAAATATCTGCGCATGGG 59.933 47.619 12.24 5.19 42.97 4.00
739 772 2.495409 TGCAAAATATCTGCGCATGG 57.505 45.000 12.24 0.00 42.97 3.66
740 773 4.380678 GTGTATGCAAAATATCTGCGCATG 59.619 41.667 12.24 5.37 42.91 4.06
741 774 4.539870 GTGTATGCAAAATATCTGCGCAT 58.460 39.130 12.24 0.00 44.92 4.73
742 775 3.545822 CGTGTATGCAAAATATCTGCGCA 60.546 43.478 10.98 10.98 42.97 6.09
743 776 2.966708 CGTGTATGCAAAATATCTGCGC 59.033 45.455 0.00 0.00 42.97 6.09
744 777 4.451379 TCGTGTATGCAAAATATCTGCG 57.549 40.909 0.00 0.00 42.97 5.18
745 778 5.049474 TGGATCGTGTATGCAAAATATCTGC 60.049 40.000 0.00 3.35 40.35 4.26
746 779 6.544038 TGGATCGTGTATGCAAAATATCTG 57.456 37.500 0.00 0.00 32.24 2.90
747 780 7.750229 AATGGATCGTGTATGCAAAATATCT 57.250 32.000 0.00 0.00 39.61 1.98
748 781 8.801715 AAAATGGATCGTGTATGCAAAATATC 57.198 30.769 0.00 0.00 39.61 1.63
749 782 8.632679 AGAAAATGGATCGTGTATGCAAAATAT 58.367 29.630 0.00 0.00 39.61 1.28
750 783 7.914871 CAGAAAATGGATCGTGTATGCAAAATA 59.085 33.333 0.00 0.00 39.61 1.40
751 784 6.753279 CAGAAAATGGATCGTGTATGCAAAAT 59.247 34.615 0.00 0.00 39.61 1.82
752 785 6.072230 TCAGAAAATGGATCGTGTATGCAAAA 60.072 34.615 0.00 0.00 39.61 2.44
753 786 5.414144 TCAGAAAATGGATCGTGTATGCAAA 59.586 36.000 0.00 0.00 39.61 3.68
754 787 4.940654 TCAGAAAATGGATCGTGTATGCAA 59.059 37.500 0.00 0.00 39.61 4.08
755 788 4.332543 GTCAGAAAATGGATCGTGTATGCA 59.667 41.667 0.00 0.00 40.56 3.96
756 789 4.260784 GGTCAGAAAATGGATCGTGTATGC 60.261 45.833 0.00 0.00 0.00 3.14
757 790 4.025730 CGGTCAGAAAATGGATCGTGTATG 60.026 45.833 0.00 0.00 0.00 2.39
758 791 4.119862 CGGTCAGAAAATGGATCGTGTAT 58.880 43.478 0.00 0.00 0.00 2.29
759 792 3.517602 CGGTCAGAAAATGGATCGTGTA 58.482 45.455 0.00 0.00 0.00 2.90
760 793 2.346803 CGGTCAGAAAATGGATCGTGT 58.653 47.619 0.00 0.00 0.00 4.49
761 794 1.062587 GCGGTCAGAAAATGGATCGTG 59.937 52.381 0.00 0.00 0.00 4.35
762 795 1.369625 GCGGTCAGAAAATGGATCGT 58.630 50.000 0.00 0.00 0.00 3.73
763 796 0.657840 GGCGGTCAGAAAATGGATCG 59.342 55.000 0.00 0.00 0.00 3.69
764 797 0.657840 CGGCGGTCAGAAAATGGATC 59.342 55.000 0.00 0.00 0.00 3.36
765 798 0.251916 TCGGCGGTCAGAAAATGGAT 59.748 50.000 7.21 0.00 0.00 3.41
766 799 0.672401 GTCGGCGGTCAGAAAATGGA 60.672 55.000 7.21 0.00 0.00 3.41
767 800 0.953471 TGTCGGCGGTCAGAAAATGG 60.953 55.000 7.21 0.00 0.00 3.16
768 801 0.165944 GTGTCGGCGGTCAGAAAATG 59.834 55.000 7.21 0.00 0.00 2.32
769 802 0.953960 GGTGTCGGCGGTCAGAAAAT 60.954 55.000 7.21 0.00 0.00 1.82
770 803 1.595929 GGTGTCGGCGGTCAGAAAA 60.596 57.895 7.21 0.00 0.00 2.29
771 804 2.029964 GGTGTCGGCGGTCAGAAA 59.970 61.111 7.21 0.00 0.00 2.52
772 805 3.998672 GGGTGTCGGCGGTCAGAA 61.999 66.667 7.21 0.00 0.00 3.02
780 813 4.736896 GGACTCGTGGGTGTCGGC 62.737 72.222 0.00 0.00 37.50 5.54
781 814 4.065281 GGGACTCGTGGGTGTCGG 62.065 72.222 0.00 0.00 37.50 4.79
782 815 2.558554 GATGGGACTCGTGGGTGTCG 62.559 65.000 0.00 0.00 37.50 4.35
783 816 1.218316 GATGGGACTCGTGGGTGTC 59.782 63.158 0.00 0.00 36.25 3.67
784 817 2.291043 GGATGGGACTCGTGGGTGT 61.291 63.158 0.00 0.00 0.00 4.16
785 818 1.626356 ATGGATGGGACTCGTGGGTG 61.626 60.000 0.00 0.00 0.00 4.61
786 819 1.306997 ATGGATGGGACTCGTGGGT 60.307 57.895 0.00 0.00 0.00 4.51
787 820 1.447643 GATGGATGGGACTCGTGGG 59.552 63.158 0.00 0.00 0.00 4.61
788 821 1.447643 GGATGGATGGGACTCGTGG 59.552 63.158 0.00 0.00 0.00 4.94
789 822 1.050988 AGGGATGGATGGGACTCGTG 61.051 60.000 0.00 0.00 0.00 4.35
790 823 0.326618 AAGGGATGGATGGGACTCGT 60.327 55.000 0.00 0.00 0.00 4.18
791 824 0.839946 AAAGGGATGGATGGGACTCG 59.160 55.000 0.00 0.00 0.00 4.18
792 825 1.143889 GGAAAGGGATGGATGGGACTC 59.856 57.143 0.00 0.00 0.00 3.36
805 838 1.524008 GCAGTGAAACGGGGAAAGGG 61.524 60.000 0.00 0.00 45.86 3.95
903 938 2.779430 ACAGATGGATGGATACCTTGCA 59.221 45.455 0.00 0.00 34.05 4.08
951 997 4.457496 CGTCAGACCGGCATGGCT 62.457 66.667 18.09 0.00 43.94 4.75
956 1002 0.965866 AGAGAATCGTCAGACCGGCA 60.966 55.000 0.00 0.00 42.67 5.69
961 1007 1.532921 CGAGGCAGAGAATCGTCAGAC 60.533 57.143 0.00 0.00 42.67 3.51
962 1008 0.735471 CGAGGCAGAGAATCGTCAGA 59.265 55.000 0.00 0.00 42.67 3.27
1410 1462 0.540830 AGACGAGAGGCAGGTTGTCT 60.541 55.000 0.00 0.00 46.78 3.41
1557 1609 0.035056 AATGCTTCAGGGAACGGGAG 60.035 55.000 0.00 0.00 0.00 4.30
1644 1696 2.094675 CCAAATCTAACCAGCACCAGG 58.905 52.381 0.00 0.00 0.00 4.45
1707 1768 1.139816 CGCTAAGATCAAGACGCGCA 61.140 55.000 5.73 0.00 34.05 6.09
1830 1894 4.201891 GCAGATACCAGCTCAAGATGTTTG 60.202 45.833 0.00 0.00 0.00 2.93
1912 1984 1.800586 AGCAACATTGTAGACAGTGCG 59.199 47.619 5.18 0.00 37.12 5.34
1966 2055 2.782922 TGATCTAAGGCACCCCCAATA 58.217 47.619 0.00 0.00 35.39 1.90
2001 2095 8.773033 ATAAATCAAGCAATCCTTAACCAGAT 57.227 30.769 0.00 0.00 31.00 2.90
2039 2143 3.728845 TCTCTTCTGAAAACGAACTGGG 58.271 45.455 0.00 0.00 0.00 4.45
2151 2255 3.627395 ACTGGTGAGTGTTTCAGAACA 57.373 42.857 0.00 0.00 43.23 3.18
2264 2369 5.224888 CAGGAACACCAACAAAGATGAATG 58.775 41.667 0.00 0.00 0.00 2.67
2348 2489 0.864455 GCTCTGATATTGCAGCCGAC 59.136 55.000 0.00 0.00 35.86 4.79
2509 2667 2.330440 TCACTGCTTGCTTTCACAGA 57.670 45.000 0.00 0.00 34.25 3.41
2536 2694 6.349300 TGTTCTTCCTACATAATTCAGGAGC 58.651 40.000 0.00 0.00 39.58 4.70
2562 2726 6.428295 TGAAATAATTTGGTACCCCTACAGG 58.572 40.000 10.07 0.00 0.00 4.00
2563 2727 6.546034 CCTGAAATAATTTGGTACCCCTACAG 59.454 42.308 10.07 6.64 0.00 2.74
2595 2760 4.752101 CCTATCGGATGTGGTTCAGATTTC 59.248 45.833 0.00 0.00 33.47 2.17
2653 2839 3.759086 GCTAAACTAAAGCCTCCTTTGCT 59.241 43.478 0.00 0.00 41.24 3.91
2687 2873 4.506654 ACATGTCGTTTTACACTCACTGTC 59.493 41.667 0.00 0.00 33.91 3.51
2784 2971 7.952930 ACATGTGAAGATACTGTATCCCTAGAT 59.047 37.037 21.08 10.49 35.79 1.98
2785 2972 7.298374 ACATGTGAAGATACTGTATCCCTAGA 58.702 38.462 21.08 8.93 35.79 2.43
2786 2973 7.531857 ACATGTGAAGATACTGTATCCCTAG 57.468 40.000 21.08 9.75 35.79 3.02
2787 2974 7.563556 TCAACATGTGAAGATACTGTATCCCTA 59.436 37.037 21.08 7.56 35.79 3.53
2788 2975 6.384015 TCAACATGTGAAGATACTGTATCCCT 59.616 38.462 21.08 11.02 35.79 4.20
2789 2976 6.582636 TCAACATGTGAAGATACTGTATCCC 58.417 40.000 21.08 14.79 35.79 3.85
2790 2977 8.668510 AATCAACATGTGAAGATACTGTATCC 57.331 34.615 21.08 9.87 40.50 2.59
2818 3005 7.121168 ACTTGAGTTGATGTTCAGACTTCAAAA 59.879 33.333 8.75 2.03 45.67 2.44
2860 3047 8.614994 TCTTCTAAAACAAAAAGAGCGAAAAG 57.385 30.769 0.00 0.00 0.00 2.27
2866 3053 9.319223 CGACTATTCTTCTAAAACAAAAAGAGC 57.681 33.333 0.00 0.00 0.00 4.09
2870 3057 7.858879 GCACCGACTATTCTTCTAAAACAAAAA 59.141 33.333 0.00 0.00 0.00 1.94
2884 3071 6.924060 ACATTACTGATTAGCACCGACTATTC 59.076 38.462 0.00 0.00 0.00 1.75
2886 3073 6.406692 ACATTACTGATTAGCACCGACTAT 57.593 37.500 0.00 0.00 0.00 2.12
2920 3107 4.142513 GCAAGGACCTGCTCATCTAAAAAG 60.143 45.833 0.00 0.00 39.34 2.27
2922 3109 3.347216 GCAAGGACCTGCTCATCTAAAA 58.653 45.455 0.00 0.00 39.34 1.52
2923 3110 2.356125 GGCAAGGACCTGCTCATCTAAA 60.356 50.000 13.42 0.00 42.25 1.85
2931 3118 0.257039 CATAAGGGCAAGGACCTGCT 59.743 55.000 13.42 0.58 42.44 4.24
2952 3139 3.259064 TCAAGTGCGGAGTAACATTAGC 58.741 45.455 0.00 0.00 0.00 3.09
2962 3149 2.208431 GATGGAGAATCAAGTGCGGAG 58.792 52.381 0.00 0.00 36.25 4.63
2978 3165 1.948834 TGCAGTTATTCCGCATGATGG 59.051 47.619 0.00 0.00 0.00 3.51
2979 3166 2.615447 ACTGCAGTTATTCCGCATGATG 59.385 45.455 15.25 0.00 34.63 3.07
2987 3174 9.717942 AAAGAGATATCATACTGCAGTTATTCC 57.282 33.333 27.06 11.54 0.00 3.01
3123 3310 8.708742 TGATGTACATACTCGTTTTGAAAGAAG 58.291 33.333 8.71 0.00 0.00 2.85
3140 3327 9.355916 ATACACTAGTAGACATGTGATGTACAT 57.644 33.333 8.43 8.43 41.15 2.29
3192 3379 4.761975 CCATAAGCAGTTTCATGGCAAAT 58.238 39.130 0.00 0.00 32.12 2.32
3244 3496 5.483685 TCATACGGCCATTTCTAGCTTAT 57.516 39.130 2.24 0.00 0.00 1.73
3297 3549 6.909550 TCACTTTACCAGGCACAAATTAAT 57.090 33.333 0.00 0.00 0.00 1.40
3302 3554 3.957497 ACATTCACTTTACCAGGCACAAA 59.043 39.130 0.00 0.00 0.00 2.83
3303 3555 3.561143 ACATTCACTTTACCAGGCACAA 58.439 40.909 0.00 0.00 0.00 3.33
3305 3557 2.488153 GGACATTCACTTTACCAGGCAC 59.512 50.000 0.00 0.00 0.00 5.01
3306 3558 2.375174 AGGACATTCACTTTACCAGGCA 59.625 45.455 0.00 0.00 0.00 4.75
3308 3560 4.651778 TGAAGGACATTCACTTTACCAGG 58.348 43.478 0.00 0.00 43.09 4.45
3368 3632 2.813754 GCTCAGTTACACTTTCATGCCA 59.186 45.455 0.00 0.00 0.00 4.92
3451 3715 5.251700 ACATCTTCTCACCCCTACTCAAAAT 59.748 40.000 0.00 0.00 0.00 1.82
3488 3752 3.461773 CCACGAGATGGCGGGACT 61.462 66.667 0.00 0.00 43.24 3.85
3506 3770 6.867816 GTCACAATGGCAAATCAACTGAATAA 59.132 34.615 0.00 0.00 0.00 1.40
3560 3850 6.772716 ACAAACTGTCAAAACTGGTATCAGAT 59.227 34.615 10.76 0.00 43.49 2.90
3577 3867 4.462483 TCTCTTTTGGCTTGAACAAACTGT 59.538 37.500 0.00 0.00 37.53 3.55
3611 3902 3.068448 ACAACAGCAATCTCATGTGCAAA 59.932 39.130 8.54 0.00 43.42 3.68
3630 3921 3.128349 GCTCCTGTTCTACGAACAACAA 58.872 45.455 10.26 0.00 32.16 2.83
3733 4029 9.609346 ACAAGATAGTTACAGTACAGTGTTTTT 57.391 29.630 0.00 0.00 31.46 1.94
3734 4030 9.257651 GACAAGATAGTTACAGTACAGTGTTTT 57.742 33.333 0.00 0.00 31.46 2.43
3735 4031 8.418662 TGACAAGATAGTTACAGTACAGTGTTT 58.581 33.333 0.00 0.00 31.46 2.83
3736 4032 7.948357 TGACAAGATAGTTACAGTACAGTGTT 58.052 34.615 0.00 0.00 31.46 3.32
3737 4033 7.520451 TGACAAGATAGTTACAGTACAGTGT 57.480 36.000 0.00 0.00 34.21 3.55
3738 4034 8.029522 ACATGACAAGATAGTTACAGTACAGTG 58.970 37.037 0.00 0.00 0.00 3.66
3739 4035 8.029522 CACATGACAAGATAGTTACAGTACAGT 58.970 37.037 0.00 0.00 0.00 3.55
3740 4036 8.029522 ACACATGACAAGATAGTTACAGTACAG 58.970 37.037 0.00 0.00 0.00 2.74
3741 4037 7.892609 ACACATGACAAGATAGTTACAGTACA 58.107 34.615 0.00 0.00 0.00 2.90
3768 4064 6.015918 TGAGGGCCAAAAGAGATTTATTCAA 58.984 36.000 6.18 0.00 0.00 2.69
3801 4097 5.581085 CCGTTCCTGAGTAGAATTGGTAAAG 59.419 44.000 0.00 0.00 0.00 1.85
3816 4113 1.475280 CGGATTCTACACCGTTCCTGA 59.525 52.381 0.00 0.00 43.53 3.86
3840 4137 7.667557 AGAGTTCACAAGTTATGCAAGTACTA 58.332 34.615 0.00 0.00 0.00 1.82
3845 4142 5.163814 GCCTAGAGTTCACAAGTTATGCAAG 60.164 44.000 0.00 0.00 0.00 4.01
3846 4143 4.695455 GCCTAGAGTTCACAAGTTATGCAA 59.305 41.667 0.00 0.00 0.00 4.08
3847 4144 4.253685 GCCTAGAGTTCACAAGTTATGCA 58.746 43.478 0.00 0.00 0.00 3.96
3848 4145 3.623510 GGCCTAGAGTTCACAAGTTATGC 59.376 47.826 0.00 0.00 0.00 3.14
3903 4200 3.965292 AATTGCATCAGAGATTCGCAG 57.035 42.857 0.00 0.00 33.48 5.18
3906 4203 5.514204 GGACAAAAATTGCATCAGAGATTCG 59.486 40.000 0.00 0.00 0.00 3.34
3926 4224 6.182627 AGCTGAATAATTCTTGACATGGACA 58.817 36.000 0.00 0.00 0.00 4.02
3930 4228 8.843262 TCCATAAGCTGAATAATTCTTGACATG 58.157 33.333 0.00 0.00 0.00 3.21
3935 4233 7.646314 CCAGTCCATAAGCTGAATAATTCTTG 58.354 38.462 0.00 0.00 34.87 3.02
3936 4234 6.264067 GCCAGTCCATAAGCTGAATAATTCTT 59.736 38.462 0.00 0.00 34.87 2.52
3951 4249 2.091610 AGAGAGCACTAGCCAGTCCATA 60.092 50.000 0.00 0.00 43.56 2.74
3958 4256 0.686789 TGCAAAGAGAGCACTAGCCA 59.313 50.000 0.00 0.00 43.56 4.75
3961 4259 5.642919 AGAAGAATTGCAAAGAGAGCACTAG 59.357 40.000 1.71 0.00 42.54 2.57
3967 4265 4.217983 AGCCAAGAAGAATTGCAAAGAGAG 59.782 41.667 1.71 0.00 0.00 3.20
3984 4282 2.476534 AAACATGCGCCGAAGCCAAG 62.477 55.000 4.18 0.00 36.02 3.61
3987 4285 2.088178 CAAAACATGCGCCGAAGCC 61.088 57.895 4.18 0.00 36.02 4.35
3996 4294 5.174398 CAGATCACAACAGAACAAAACATGC 59.826 40.000 0.00 0.00 0.00 4.06
4002 4300 4.452114 CGGATCAGATCACAACAGAACAAA 59.548 41.667 12.66 0.00 0.00 2.83
4018 4316 6.045318 ACATGAGAGATAACAAACGGATCAG 58.955 40.000 0.00 0.00 0.00 2.90
4029 6317 8.147642 CCAAATCTTGGTACATGAGAGATAAC 57.852 38.462 0.00 0.00 45.55 1.89
4076 6395 0.675083 TTCCGCACTCTTAACACCGA 59.325 50.000 0.00 0.00 0.00 4.69
4077 6396 1.504359 TTTCCGCACTCTTAACACCG 58.496 50.000 0.00 0.00 0.00 4.94
4111 6430 0.108898 CTGGCCTTCACTGACTCGAG 60.109 60.000 11.84 11.84 0.00 4.04
4127 6446 6.093909 TGAATGTAGTGTTATTGATGTGCTGG 59.906 38.462 0.00 0.00 0.00 4.85
4130 6449 6.841119 TGTGAATGTAGTGTTATTGATGTGC 58.159 36.000 0.00 0.00 0.00 4.57
4133 6452 7.911727 CACCATGTGAATGTAGTGTTATTGATG 59.088 37.037 0.00 0.00 35.23 3.07
4154 6473 4.599041 TCAAGCTATAAAACAGGCACCAT 58.401 39.130 0.00 0.00 0.00 3.55
4182 6501 6.284459 GGGAGTAATGTGAATGTTCTCTAGG 58.716 44.000 0.00 0.00 0.00 3.02
4185 6504 4.536090 TGGGGAGTAATGTGAATGTTCTCT 59.464 41.667 0.00 0.00 0.00 3.10
4186 6505 4.843728 TGGGGAGTAATGTGAATGTTCTC 58.156 43.478 0.00 0.00 0.00 2.87
4187 6506 4.927267 TGGGGAGTAATGTGAATGTTCT 57.073 40.909 0.00 0.00 0.00 3.01
4194 6513 4.878968 TCTCAGTATGGGGAGTAATGTGA 58.121 43.478 0.00 0.00 37.03 3.58
4203 6522 3.055094 GTCTTTTGCTCTCAGTATGGGGA 60.055 47.826 0.00 0.00 37.03 4.81
4211 6530 4.574013 AGTTTCAGTGTCTTTTGCTCTCAG 59.426 41.667 0.00 0.00 0.00 3.35
4213 6532 4.572389 TCAGTTTCAGTGTCTTTTGCTCTC 59.428 41.667 0.00 0.00 0.00 3.20
4215 6534 4.882671 TCAGTTTCAGTGTCTTTTGCTC 57.117 40.909 0.00 0.00 0.00 4.26
4216 6535 6.058183 AGTATCAGTTTCAGTGTCTTTTGCT 58.942 36.000 0.00 0.00 0.00 3.91
4225 6544 9.438291 CAAGTTTTGTTAGTATCAGTTTCAGTG 57.562 33.333 0.00 0.00 0.00 3.66
4234 6553 8.740906 TGGTTGTTTCAAGTTTTGTTAGTATCA 58.259 29.630 0.00 0.00 0.00 2.15
4238 6557 8.745590 AGTATGGTTGTTTCAAGTTTTGTTAGT 58.254 29.630 0.00 0.00 0.00 2.24
4263 6936 1.897398 CTTTTGGGACGAACGGCGAG 61.897 60.000 16.62 7.10 44.57 5.03
4281 6954 0.036875 GGCAAGTGAAGGGTGCTACT 59.963 55.000 0.00 0.00 38.36 2.57
4282 6955 0.036875 AGGCAAGTGAAGGGTGCTAC 59.963 55.000 0.00 0.00 38.36 3.58
4283 6956 1.555075 CTAGGCAAGTGAAGGGTGCTA 59.445 52.381 0.00 0.00 38.36 3.49
4301 6974 0.533491 CCGTCGAATGGTGGGTTCTA 59.467 55.000 0.00 0.00 0.00 2.10
4340 7013 1.082117 CGACCTTCGCGCATAGGTTT 61.082 55.000 25.83 9.24 44.65 3.27
4372 7045 1.301716 GCCGAACAACCTCTGCAGA 60.302 57.895 17.19 17.19 0.00 4.26
4373 7046 2.328099 GGCCGAACAACCTCTGCAG 61.328 63.158 7.63 7.63 0.00 4.41
4374 7047 2.281484 GGCCGAACAACCTCTGCA 60.281 61.111 0.00 0.00 0.00 4.41
4375 7048 2.032681 AGGCCGAACAACCTCTGC 59.967 61.111 0.00 0.00 0.00 4.26
4376 7049 0.250295 TTCAGGCCGAACAACCTCTG 60.250 55.000 0.00 0.00 32.56 3.35
4377 7050 2.142220 TTCAGGCCGAACAACCTCT 58.858 52.632 0.00 0.00 32.56 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.