Multiple sequence alignment - TraesCS6B01G093400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G093400 chr6B 100.000 6383 0 0 1 6383 69460034 69453652 0.000000e+00 11788.0
1 TraesCS6B01G093400 chr6D 95.905 2442 90 5 2587 5028 32864780 32862349 0.000000e+00 3947.0
2 TraesCS6B01G093400 chr6D 91.107 1563 106 17 460 2000 32866884 32865333 0.000000e+00 2085.0
3 TraesCS6B01G093400 chr6D 92.619 1260 62 14 5091 6338 32862029 32860789 0.000000e+00 1783.0
4 TraesCS6B01G093400 chr6D 97.805 410 6 1 1999 2405 32865170 32864761 0.000000e+00 704.0
5 TraesCS6B01G093400 chr6D 96.839 348 11 0 5 352 32867231 32866884 3.320000e-162 582.0
6 TraesCS6B01G093400 chr6D 95.238 42 2 0 5780 5821 218447265 218447224 4.130000e-07 67.6
7 TraesCS6B01G093400 chr6A 94.210 2228 105 13 2478 4694 37441659 37439445 0.000000e+00 3378.0
8 TraesCS6B01G093400 chr6A 90.451 2084 137 22 5 2062 37444159 37442112 0.000000e+00 2689.0
9 TraesCS6B01G093400 chr6A 87.886 1263 117 29 5145 6383 37417200 37415950 0.000000e+00 1452.0
10 TraesCS6B01G093400 chr6A 89.453 256 21 4 2091 2343 37441995 37441743 1.030000e-82 318.0
11 TraesCS6B01G093400 chr6A 95.455 44 2 0 2361 2404 37441565 37441522 3.190000e-08 71.3
12 TraesCS6B01G093400 chr6A 95.238 42 2 0 5780 5821 297710358 297710317 4.130000e-07 67.6
13 TraesCS6B01G093400 chr6A 94.737 38 1 1 2345 2382 37441716 37441680 2.490000e-04 58.4
14 TraesCS6B01G093400 chr5B 93.694 555 29 4 305 859 494709605 494710153 0.000000e+00 826.0
15 TraesCS6B01G093400 chr5B 98.378 185 3 0 2401 2585 264932543 264932359 6.170000e-85 326.0
16 TraesCS6B01G093400 chr5B 87.719 57 4 2 2228 2281 136020810 136020754 5.340000e-06 63.9
17 TraesCS6B01G093400 chr7A 99.451 182 1 0 2405 2586 502353694 502353875 1.330000e-86 331.0
18 TraesCS6B01G093400 chr7A 97.619 42 1 0 5780 5821 186640683 186640642 8.880000e-09 73.1
19 TraesCS6B01G093400 chr7A 100.000 38 0 0 5784 5821 12720934 12720897 3.190000e-08 71.3
20 TraesCS6B01G093400 chr7A 93.333 45 3 0 5780 5824 63776090 63776046 4.130000e-07 67.6
21 TraesCS6B01G093400 chr2A 99.451 182 1 0 2405 2586 116436843 116437024 1.330000e-86 331.0
22 TraesCS6B01G093400 chr2A 98.396 187 2 1 2400 2585 754002386 754002200 1.720000e-85 327.0
23 TraesCS6B01G093400 chr2A 97.861 187 4 0 2400 2586 28827578 28827392 2.220000e-84 324.0
24 TraesCS6B01G093400 chr3A 98.387 186 3 0 2398 2583 642038746 642038931 1.720000e-85 327.0
25 TraesCS6B01G093400 chr1A 97.382 191 4 1 2405 2595 557921017 557920828 2.220000e-84 324.0
26 TraesCS6B01G093400 chr4D 96.891 193 5 1 2392 2583 405455319 405455127 7.980000e-84 322.0
27 TraesCS6B01G093400 chr4A 96.429 196 5 2 2390 2583 317089605 317089800 7.980000e-84 322.0
28 TraesCS6B01G093400 chr7D 95.556 45 2 0 5780 5824 59413193 59413149 8.880000e-09 73.1
29 TraesCS6B01G093400 chr2D 97.619 42 1 0 5780 5821 331737157 331737116 8.880000e-09 73.1
30 TraesCS6B01G093400 chr3D 81.395 86 16 0 1167 1252 54765064 54764979 3.190000e-08 71.3
31 TraesCS6B01G093400 chr1D 93.478 46 2 1 5780 5825 169065362 169065406 4.130000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G093400 chr6B 69453652 69460034 6382 True 11788.00 11788 100.0000 1 6383 1 chr6B.!!$R1 6382
1 TraesCS6B01G093400 chr6D 32860789 32867231 6442 True 1820.20 3947 94.8550 5 6338 5 chr6D.!!$R2 6333
2 TraesCS6B01G093400 chr6A 37415950 37417200 1250 True 1452.00 1452 87.8860 5145 6383 1 chr6A.!!$R1 1238
3 TraesCS6B01G093400 chr6A 37439445 37444159 4714 True 1302.94 3378 92.8612 5 4694 5 chr6A.!!$R3 4689
4 TraesCS6B01G093400 chr5B 494709605 494710153 548 False 826.00 826 93.6940 305 859 1 chr5B.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 939 1.257055 ACCCGGACCATGCAAAATGG 61.257 55.0 0.73 3.18 44.54 3.16 F
1645 1669 0.538516 TTGCAACTACACCGGGCAAT 60.539 50.0 6.32 0.00 39.33 3.56 F
2419 2739 0.553333 ATTAGAAGGGGAGCCTTGGC 59.447 55.0 2.97 2.97 0.00 4.52 F
2465 2785 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.0 0.00 0.00 0.00 2.69 F
2474 2794 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.0 0.00 0.00 35.79 3.53 F
3938 4280 0.185175 GAACCACCAACCAGTTCCCT 59.815 55.0 0.00 0.00 35.03 4.20 F
5022 5364 0.178973 AAACGAAAAGGGGAGGGTGG 60.179 55.0 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2455 2775 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94 R
2456 2776 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28 R
4250 4592 1.133025 GATGGCATTTGTCCCGTGAAG 59.867 52.381 0.00 0.00 0.00 3.02 R
4313 4655 1.982226 TCTCCTGAAATCCGGTTCCAA 59.018 47.619 0.00 0.00 0.00 3.53 R
4358 4700 4.287067 AGATTCAACCAAGCAAGAGAGGTA 59.713 41.667 0.00 0.00 33.15 3.08 R
5076 5418 0.040958 CTCCAGCTTCAACGTTGTGC 60.041 55.000 28.01 28.01 0.00 4.57 R
6168 6807 0.394899 CTCCTTTCTCCCCATGCACC 60.395 60.000 0.00 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 4.563184 GTCAGTATGTTGATGACGAAGGAC 59.437 45.833 0.00 0.00 37.40 3.85
90 93 7.974501 ACGAAGGACACACTAATAAGTAATGAG 59.025 37.037 0.00 0.00 33.48 2.90
159 162 5.029807 TCCGCATTATATGACAGTTTGGA 57.970 39.130 0.00 0.00 0.00 3.53
168 171 2.627945 TGACAGTTTGGAGTGACACAC 58.372 47.619 8.59 0.69 34.10 3.82
331 338 2.232452 CTCTCTGTCCGTTCCAGATGTT 59.768 50.000 0.00 0.00 38.23 2.71
389 397 1.792949 CTGTGTAGGACGACTTGCAAC 59.207 52.381 0.00 0.00 0.00 4.17
530 538 3.554934 TCCAAGTGACACAAGAAGCATT 58.445 40.909 8.59 0.00 0.00 3.56
534 542 4.311816 AGTGACACAAGAAGCATTTTGG 57.688 40.909 8.59 0.00 0.00 3.28
536 544 2.364970 TGACACAAGAAGCATTTTGGGG 59.635 45.455 0.00 0.00 32.01 4.96
537 545 1.693606 ACACAAGAAGCATTTTGGGGG 59.306 47.619 0.00 0.00 32.01 5.40
541 549 1.928868 AGAAGCATTTTGGGGGTCAG 58.071 50.000 0.00 0.00 0.00 3.51
584 592 2.071778 AACATGGTGTTGCTGTTCCT 57.928 45.000 0.00 0.00 39.45 3.36
733 746 5.170748 CAAATGTTTCTATTGGTGGGCTTC 58.829 41.667 0.00 0.00 0.00 3.86
751 764 3.612479 GCTTCAAGTTTACCACATGCCTG 60.612 47.826 0.00 0.00 0.00 4.85
752 765 3.500448 TCAAGTTTACCACATGCCTGA 57.500 42.857 0.00 0.00 0.00 3.86
753 766 3.411446 TCAAGTTTACCACATGCCTGAG 58.589 45.455 0.00 0.00 0.00 3.35
754 767 2.489329 CAAGTTTACCACATGCCTGAGG 59.511 50.000 3.97 3.97 38.91 3.86
755 768 1.705186 AGTTTACCACATGCCTGAGGT 59.295 47.619 14.83 14.83 46.52 3.85
756 769 1.812571 GTTTACCACATGCCTGAGGTG 59.187 52.381 18.77 1.05 44.81 4.00
808 821 4.619973 TGCAAGCATAAACCAAAGACTTG 58.380 39.130 0.00 0.00 36.87 3.16
900 917 3.313007 CTGTCAACCACGGCATGCG 62.313 63.158 12.44 9.76 0.00 4.73
922 939 1.257055 ACCCGGACCATGCAAAATGG 61.257 55.000 0.73 3.18 44.54 3.16
970 987 5.136392 AGGGAACATACTCCTACTGTCCTAT 59.864 44.000 0.00 0.00 35.63 2.57
1093 1111 3.286751 CAGCCAACACCACCACCG 61.287 66.667 0.00 0.00 0.00 4.94
1122 1146 2.581354 CTCCCAGACCAAGCCTCG 59.419 66.667 0.00 0.00 0.00 4.63
1152 1176 3.117701 TCCACCTCAAACATTCCTTCACA 60.118 43.478 0.00 0.00 0.00 3.58
1178 1202 2.279517 CCTACCGTCATGGCGAGC 60.280 66.667 23.62 0.00 43.94 5.03
1179 1203 2.786495 CCTACCGTCATGGCGAGCT 61.786 63.158 23.62 5.48 43.94 4.09
1183 1207 2.125552 CGTCATGGCGAGCTGGAA 60.126 61.111 16.21 0.00 0.00 3.53
1185 1209 1.298157 CGTCATGGCGAGCTGGAAAA 61.298 55.000 16.21 0.00 0.00 2.29
1256 1280 3.055094 GTCATCTCCCTTAACCTCAGCAA 60.055 47.826 0.00 0.00 0.00 3.91
1266 1290 1.737735 CCTCAGCAACATCGACGCA 60.738 57.895 0.00 0.00 0.00 5.24
1267 1291 1.291184 CCTCAGCAACATCGACGCAA 61.291 55.000 0.00 0.00 0.00 4.85
1285 1309 4.470170 CGATCCACCGCGTCGACA 62.470 66.667 17.16 0.00 37.55 4.35
1311 1335 0.545309 TCCTCAACCTCACCTCCCTG 60.545 60.000 0.00 0.00 0.00 4.45
1318 1342 0.617249 CCTCACCTCCCTGAAGAGCT 60.617 60.000 0.00 0.00 32.17 4.09
1357 1381 1.414158 CATTTCCGAGGGGCTCTCTA 58.586 55.000 13.47 0.00 40.30 2.43
1371 1395 3.591196 CTCTCTACACTGAGCAAGCTT 57.409 47.619 0.00 0.00 34.29 3.74
1374 1398 1.276421 TCTACACTGAGCAAGCTTCCC 59.724 52.381 0.00 0.00 0.00 3.97
1382 1406 0.767375 AGCAAGCTTCCCTCACTGAA 59.233 50.000 0.00 0.00 0.00 3.02
1385 1409 1.876156 CAAGCTTCCCTCACTGAACAC 59.124 52.381 0.00 0.00 0.00 3.32
1398 1422 2.636893 ACTGAACACTCTGGAGCTTCAT 59.363 45.455 0.00 0.00 31.77 2.57
1403 1427 1.004044 CACTCTGGAGCTTCATGGGTT 59.996 52.381 0.00 0.00 0.00 4.11
1412 1436 2.016096 GCTTCATGGGTTGAGCTCCTC 61.016 57.143 12.15 3.91 35.27 3.71
1418 1442 1.985116 GGTTGAGCTCCTCGGACCT 60.985 63.158 12.15 0.00 36.80 3.85
1425 1449 2.043248 TCCTCGGACCTGGTAGGC 60.043 66.667 8.96 0.00 39.63 3.93
1441 1465 2.201022 GGCCCGGAGCTATCTTCGA 61.201 63.158 0.73 0.00 44.02 3.71
1468 1492 3.587923 GATATCAGGCAGCTGACATCTC 58.412 50.000 24.55 5.92 35.18 2.75
1503 1527 4.433615 GCTATGATTTCTCTCGGTCACAA 58.566 43.478 0.00 0.00 0.00 3.33
1535 1559 3.056313 GCAATCTGACGGGCTTGGC 62.056 63.158 0.00 0.00 0.00 4.52
1590 1614 1.022735 CAGTGCCTGATCAGATTGGC 58.977 55.000 24.62 19.39 45.10 4.52
1620 1644 1.136147 GCTGACGCTGCTGGATTTG 59.864 57.895 0.00 0.00 0.00 2.32
1645 1669 0.538516 TTGCAACTACACCGGGCAAT 60.539 50.000 6.32 0.00 39.33 3.56
1662 1686 2.689983 GCAATCGGTTCCTTCATGGATT 59.310 45.455 0.00 0.00 45.68 3.01
1674 1698 5.016173 CCTTCATGGATTGGAAACCTTACA 58.984 41.667 0.00 0.00 38.35 2.41
1860 1884 6.474140 AATGCATATCATGGTTGACACAAT 57.526 33.333 0.00 0.00 35.13 2.71
1942 1966 2.514458 AACAATGAGGTCACCCCATC 57.486 50.000 0.00 0.00 34.66 3.51
2411 2731 9.237706 AGAAATATAGGTTGAATTAGAAGGGGA 57.762 33.333 0.00 0.00 0.00 4.81
2412 2732 9.508642 GAAATATAGGTTGAATTAGAAGGGGAG 57.491 37.037 0.00 0.00 0.00 4.30
2413 2733 3.653835 AGGTTGAATTAGAAGGGGAGC 57.346 47.619 0.00 0.00 0.00 4.70
2414 2734 2.242452 AGGTTGAATTAGAAGGGGAGCC 59.758 50.000 0.00 0.00 0.00 4.70
2415 2735 2.242452 GGTTGAATTAGAAGGGGAGCCT 59.758 50.000 0.00 0.00 0.00 4.58
2416 2736 3.309193 GGTTGAATTAGAAGGGGAGCCTT 60.309 47.826 0.00 0.00 0.00 4.35
2417 2737 3.652057 TGAATTAGAAGGGGAGCCTTG 57.348 47.619 0.00 0.00 0.00 3.61
2418 2738 2.242196 TGAATTAGAAGGGGAGCCTTGG 59.758 50.000 0.00 0.00 0.00 3.61
2419 2739 0.553333 ATTAGAAGGGGAGCCTTGGC 59.447 55.000 2.97 2.97 0.00 4.52
2420 2740 1.910580 TTAGAAGGGGAGCCTTGGCG 61.911 60.000 5.95 0.00 0.00 5.69
2428 2748 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2429 2749 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2430 2750 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2431 2751 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2432 2752 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2433 2753 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2434 2754 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2438 2758 2.870372 CAGTGGTAAAGCTGCCGC 59.130 61.111 0.00 7.47 38.05 6.53
2439 2759 2.359975 AGTGGTAAAGCTGCCGCC 60.360 61.111 10.87 1.95 38.51 6.13
2440 2760 2.359975 GTGGTAAAGCTGCCGCCT 60.360 61.111 0.00 0.00 36.60 5.52
2441 2761 1.971695 GTGGTAAAGCTGCCGCCTT 60.972 57.895 0.00 0.00 36.60 4.35
2442 2762 1.971167 TGGTAAAGCTGCCGCCTTG 60.971 57.895 0.00 0.00 36.60 3.61
2443 2763 1.971695 GGTAAAGCTGCCGCCTTGT 60.972 57.895 0.00 0.00 36.60 3.16
2444 2764 1.210155 GTAAAGCTGCCGCCTTGTG 59.790 57.895 0.00 0.00 36.60 3.33
2445 2765 1.072332 TAAAGCTGCCGCCTTGTGA 59.928 52.632 0.00 0.00 36.60 3.58
2446 2766 1.234615 TAAAGCTGCCGCCTTGTGAC 61.235 55.000 0.00 0.00 36.60 3.67
2449 2769 2.360350 CTGCCGCCTTGTGACCAT 60.360 61.111 0.00 0.00 0.00 3.55
2450 2770 2.672651 TGCCGCCTTGTGACCATG 60.673 61.111 0.00 0.00 0.00 3.66
2451 2771 2.359850 GCCGCCTTGTGACCATGA 60.360 61.111 0.00 0.00 0.00 3.07
2452 2772 2.401766 GCCGCCTTGTGACCATGAG 61.402 63.158 0.00 0.00 0.00 2.90
2453 2773 1.746615 CCGCCTTGTGACCATGAGG 60.747 63.158 0.00 0.00 42.21 3.86
2463 2783 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
2464 2784 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
2465 2785 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
2466 2786 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
2467 2787 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
2468 2788 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
2469 2789 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
2470 2790 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
2471 2791 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
2472 2792 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
2473 2793 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
2474 2794 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
2475 2795 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
2476 2796 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
2477 2797 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
2533 2853 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2534 2854 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2535 2855 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2536 2856 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2537 2857 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2538 2858 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2539 2859 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2540 2860 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2541 2861 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2542 2862 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
2546 2866 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
2576 2896 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
2577 2897 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
2578 2898 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
2579 2899 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
2778 3120 9.436957 CACTGGAACATATTTTGACTAGTACTT 57.563 33.333 0.00 0.00 38.20 2.24
3049 3391 1.280421 CCCTTTCTGGAGGTTGGAGAG 59.720 57.143 0.00 0.00 38.35 3.20
3106 3448 3.479269 CGCCGACGAAGAAGGTGC 61.479 66.667 0.00 0.00 43.93 5.01
3417 3759 2.396590 ACCAATACCGGTAACTGCAG 57.603 50.000 20.22 13.48 37.57 4.41
3420 3762 2.614481 CCAATACCGGTAACTGCAGTGT 60.614 50.000 22.49 15.81 0.00 3.55
3428 3770 2.290323 GGTAACTGCAGTGTCTGGGAAT 60.290 50.000 22.49 3.34 31.21 3.01
3434 3776 4.225042 ACTGCAGTGTCTGGGAATGTATTA 59.775 41.667 20.97 0.00 31.21 0.98
3587 3929 7.921041 TCTCAATATCTTGGACCTGTCTTAT 57.079 36.000 0.00 0.00 32.95 1.73
3623 3965 4.508047 GGATCACTCCCATCATGCCTTATT 60.508 45.833 0.00 0.00 35.28 1.40
3639 3981 5.014202 GCCTTATTGGAAGTGGGAAACTAA 58.986 41.667 0.00 0.00 35.92 2.24
3671 4013 9.520204 TTGAAGTTGAGAGAAAATCAATTCAAC 57.480 29.630 14.82 6.98 42.72 3.18
3701 4043 6.926272 CGTTCCCTGAAAATATTAGAGAGGAG 59.074 42.308 0.00 0.00 0.00 3.69
3777 4119 6.925165 ACCAAGAGCATTGTTAAATTGTCAAG 59.075 34.615 0.00 0.00 0.00 3.02
3779 4121 7.115378 CCAAGAGCATTGTTAAATTGTCAAGAC 59.885 37.037 0.00 0.00 0.00 3.01
3838 4180 3.496331 GTTCCTTTCCATCTTGGTTGGA 58.504 45.455 0.00 0.00 41.50 3.53
3839 4181 3.154827 TCCTTTCCATCTTGGTTGGAC 57.845 47.619 0.00 0.00 42.88 4.02
3938 4280 0.185175 GAACCACCAACCAGTTCCCT 59.815 55.000 0.00 0.00 35.03 4.20
4070 4412 7.307514 CGAGTTTTAGGCTATTACACAAACACA 60.308 37.037 15.70 0.00 0.00 3.72
4172 4514 6.991485 TTCAAAGCAATCGATTTCTCAAAC 57.009 33.333 10.77 0.00 0.00 2.93
4187 4529 5.125100 TCTCAAACAACTCATTTGATGGC 57.875 39.130 0.96 0.00 43.31 4.40
4189 4531 3.640498 TCAAACAACTCATTTGATGGCCA 59.360 39.130 8.56 8.56 40.32 5.36
4191 4533 4.895668 AACAACTCATTTGATGGCCATT 57.104 36.364 21.84 0.00 38.73 3.16
4250 4592 5.220970 CGGGGTTAATATGTCATCCAACAAC 60.221 44.000 0.00 0.00 31.81 3.32
4275 4617 1.475751 CGGGACAAATGCCATCTAGCT 60.476 52.381 0.00 0.00 35.61 3.32
4313 4655 1.827969 CTGGAATCGTTGGACCTCTCT 59.172 52.381 0.00 0.00 0.00 3.10
4358 4700 0.320247 CGCAAGTGCTGACCTCTCTT 60.320 55.000 1.21 0.00 39.32 2.85
4477 4819 0.402504 AACGTGGGGCTATGTGGAAA 59.597 50.000 0.00 0.00 0.00 3.13
4517 4859 4.281941 TGTGAGACTACAGATTCAACTGCT 59.718 41.667 0.00 0.00 41.06 4.24
4698 5040 4.517952 TGGTAAATCCATGTGCTTTGTG 57.482 40.909 0.00 0.00 41.93 3.33
4699 5041 3.894427 TGGTAAATCCATGTGCTTTGTGT 59.106 39.130 0.00 0.00 41.93 3.72
4700 5042 4.236935 GGTAAATCCATGTGCTTTGTGTG 58.763 43.478 0.00 0.00 35.97 3.82
4701 5043 2.443887 AATCCATGTGCTTTGTGTGC 57.556 45.000 0.00 0.00 0.00 4.57
4702 5044 1.624336 ATCCATGTGCTTTGTGTGCT 58.376 45.000 0.00 0.00 0.00 4.40
4703 5045 2.268762 TCCATGTGCTTTGTGTGCTA 57.731 45.000 0.00 0.00 0.00 3.49
4704 5046 2.794103 TCCATGTGCTTTGTGTGCTAT 58.206 42.857 0.00 0.00 0.00 2.97
4705 5047 3.949132 TCCATGTGCTTTGTGTGCTATA 58.051 40.909 0.00 0.00 0.00 1.31
4706 5048 3.689161 TCCATGTGCTTTGTGTGCTATAC 59.311 43.478 0.00 0.00 0.00 1.47
4707 5049 3.181497 CCATGTGCTTTGTGTGCTATACC 60.181 47.826 0.00 0.00 0.00 2.73
4713 5055 3.372822 GCTTTGTGTGCTATACCGCTAAA 59.627 43.478 0.00 0.00 0.00 1.85
4789 5131 7.042321 TGTTCATAGTTTGTTCTTGTTAGACGG 60.042 37.037 0.00 0.00 0.00 4.79
4791 5133 4.411256 AGTTTGTTCTTGTTAGACGGGA 57.589 40.909 0.00 0.00 0.00 5.14
4872 5214 8.796475 ACAAAGTACTTGTATGCTTCATTTCAT 58.204 29.630 9.34 0.00 46.75 2.57
4952 5294 8.828644 TGCATTGCATTTTTATTTCATATGGTC 58.171 29.630 7.38 0.00 31.71 4.02
4953 5295 8.005466 GCATTGCATTTTTATTTCATATGGTCG 58.995 33.333 3.15 0.00 0.00 4.79
4999 5341 4.097589 AGGCACTAGTGGTATCGACTAAAC 59.902 45.833 23.95 2.63 36.02 2.01
5004 5346 7.255569 CACTAGTGGTATCGACTAAACATGAA 58.744 38.462 15.49 0.00 0.00 2.57
5019 5361 1.818674 CATGAAACGAAAAGGGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
5020 5362 0.848053 TGAAACGAAAAGGGGAGGGT 59.152 50.000 0.00 0.00 0.00 4.34
5022 5364 0.178973 AAACGAAAAGGGGAGGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
5023 5365 1.358051 AACGAAAAGGGGAGGGTGGT 61.358 55.000 0.00 0.00 0.00 4.16
5025 5367 1.076727 GAAAAGGGGAGGGTGGTGG 59.923 63.158 0.00 0.00 0.00 4.61
5026 5368 1.703597 AAAAGGGGAGGGTGGTGGT 60.704 57.895 0.00 0.00 0.00 4.16
5027 5369 2.018884 AAAAGGGGAGGGTGGTGGTG 62.019 60.000 0.00 0.00 0.00 4.17
5030 5372 3.966543 GGGAGGGTGGTGGTGGTG 61.967 72.222 0.00 0.00 0.00 4.17
5031 5373 3.966543 GGAGGGTGGTGGTGGTGG 61.967 72.222 0.00 0.00 0.00 4.61
5032 5374 3.175710 GAGGGTGGTGGTGGTGGT 61.176 66.667 0.00 0.00 0.00 4.16
5033 5375 3.491598 GAGGGTGGTGGTGGTGGTG 62.492 68.421 0.00 0.00 0.00 4.17
5034 5376 3.816090 GGGTGGTGGTGGTGGTGT 61.816 66.667 0.00 0.00 0.00 4.16
5035 5377 2.518349 GGTGGTGGTGGTGGTGTG 60.518 66.667 0.00 0.00 0.00 3.82
5036 5378 2.274104 GTGGTGGTGGTGGTGTGT 59.726 61.111 0.00 0.00 0.00 3.72
5037 5379 2.118404 GTGGTGGTGGTGGTGTGTG 61.118 63.158 0.00 0.00 0.00 3.82
5038 5380 2.274104 GGTGGTGGTGGTGTGTGT 59.726 61.111 0.00 0.00 0.00 3.72
5039 5381 2.118404 GGTGGTGGTGGTGTGTGTG 61.118 63.158 0.00 0.00 0.00 3.82
5040 5382 2.118404 GTGGTGGTGGTGTGTGTGG 61.118 63.158 0.00 0.00 0.00 4.17
5041 5383 2.518349 GGTGGTGGTGTGTGTGGG 60.518 66.667 0.00 0.00 0.00 4.61
5042 5384 2.518349 GTGGTGGTGTGTGTGGGG 60.518 66.667 0.00 0.00 0.00 4.96
5043 5385 3.814906 TGGTGGTGTGTGTGGGGG 61.815 66.667 0.00 0.00 0.00 5.40
5066 5408 3.366052 GGGGGTCATCTTAGAAAAGCA 57.634 47.619 0.00 0.00 32.36 3.91
5067 5409 3.903467 GGGGGTCATCTTAGAAAAGCAT 58.097 45.455 0.00 0.00 32.36 3.79
5068 5410 3.633986 GGGGGTCATCTTAGAAAAGCATG 59.366 47.826 0.00 0.00 32.36 4.06
5069 5411 4.526970 GGGGTCATCTTAGAAAAGCATGA 58.473 43.478 0.00 0.00 32.06 3.07
5070 5412 5.136105 GGGGTCATCTTAGAAAAGCATGAT 58.864 41.667 0.00 0.00 34.61 2.45
5071 5413 5.009410 GGGGTCATCTTAGAAAAGCATGATG 59.991 44.000 0.00 0.00 34.61 3.07
5072 5414 5.009410 GGGTCATCTTAGAAAAGCATGATGG 59.991 44.000 0.00 0.00 34.61 3.51
5073 5415 5.009410 GGTCATCTTAGAAAAGCATGATGGG 59.991 44.000 0.00 0.00 34.61 4.00
5074 5416 5.009410 GTCATCTTAGAAAAGCATGATGGGG 59.991 44.000 0.00 0.00 34.61 4.96
5075 5417 4.591321 TCTTAGAAAAGCATGATGGGGT 57.409 40.909 0.00 0.00 32.36 4.95
5076 5418 4.272489 TCTTAGAAAAGCATGATGGGGTG 58.728 43.478 0.00 0.00 32.36 4.61
5077 5419 1.188863 AGAAAAGCATGATGGGGTGC 58.811 50.000 0.00 0.00 41.57 5.01
5078 5420 0.896923 GAAAAGCATGATGGGGTGCA 59.103 50.000 0.00 0.00 43.63 4.57
5079 5421 0.609662 AAAAGCATGATGGGGTGCAC 59.390 50.000 8.80 8.80 43.63 4.57
5080 5422 0.542467 AAAGCATGATGGGGTGCACA 60.542 50.000 20.43 0.00 43.63 4.57
5081 5423 0.542467 AAGCATGATGGGGTGCACAA 60.542 50.000 20.43 3.64 43.63 3.33
5082 5424 1.216178 GCATGATGGGGTGCACAAC 59.784 57.895 20.43 11.15 40.94 3.32
5083 5425 1.507630 CATGATGGGGTGCACAACG 59.492 57.895 20.43 0.00 0.00 4.10
5084 5426 1.074775 ATGATGGGGTGCACAACGT 59.925 52.632 20.43 11.81 0.00 3.99
5085 5427 0.539438 ATGATGGGGTGCACAACGTT 60.539 50.000 20.43 0.00 0.00 3.99
5086 5428 1.285641 GATGGGGTGCACAACGTTG 59.714 57.895 26.20 26.20 0.00 4.10
5087 5429 1.152860 ATGGGGTGCACAACGTTGA 60.153 52.632 33.66 9.81 0.00 3.18
5088 5430 0.753479 ATGGGGTGCACAACGTTGAA 60.753 50.000 33.66 15.99 0.00 2.69
5089 5431 1.358759 GGGGTGCACAACGTTGAAG 59.641 57.895 33.66 24.29 0.00 3.02
5095 5693 0.040958 GCACAACGTTGAAGCTGGAG 60.041 55.000 33.66 13.09 32.80 3.86
5124 5723 5.968676 ACTTATTACATGGCACTAAGGGA 57.031 39.130 0.00 0.00 0.00 4.20
5183 5782 6.382859 TCCTATTGTGCACTCCAGTAGAATAA 59.617 38.462 19.41 0.00 0.00 1.40
5188 5789 7.377766 TGTGCACTCCAGTAGAATAATTTTC 57.622 36.000 19.41 0.00 0.00 2.29
5471 6072 3.421394 TCCCCTGATCATCCTACAAGT 57.579 47.619 0.00 0.00 0.00 3.16
5482 6083 4.036852 TCATCCTACAAGTAGAGTGATGCG 59.963 45.833 8.76 0.00 33.38 4.73
5487 6088 3.353557 ACAAGTAGAGTGATGCGGAGTA 58.646 45.455 0.00 0.00 0.00 2.59
5498 6099 8.038944 AGAGTGATGCGGAGTAAAAATAAAGTA 58.961 33.333 0.00 0.00 0.00 2.24
5696 6300 5.821516 TGTTTGTTTTACGAATCACCAGT 57.178 34.783 0.00 0.00 0.00 4.00
5763 6392 7.172361 ACAACCATATTTTTGCACCATAACAAC 59.828 33.333 0.00 0.00 0.00 3.32
5805 6441 5.324697 GTCCATTTCTGCGACAAGTAATTC 58.675 41.667 0.00 0.00 0.00 2.17
5806 6442 4.092821 TCCATTTCTGCGACAAGTAATTCG 59.907 41.667 0.00 0.00 38.31 3.34
5810 6446 1.022451 TGCGACAAGTAATTCGGGGC 61.022 55.000 0.00 0.00 35.73 5.80
5812 6448 1.426041 CGACAAGTAATTCGGGGCGG 61.426 60.000 0.00 0.00 0.00 6.13
5815 6451 0.814010 CAAGTAATTCGGGGCGGAGG 60.814 60.000 0.00 0.00 0.00 4.30
5816 6452 1.979619 AAGTAATTCGGGGCGGAGGG 61.980 60.000 0.00 0.00 0.00 4.30
5886 6524 5.531634 ACAATTTTGCACCACTGTCAATAG 58.468 37.500 0.00 0.00 0.00 1.73
5888 6527 2.268762 TTGCACCACTGTCAATAGCA 57.731 45.000 0.00 0.00 0.00 3.49
5893 6532 3.057315 GCACCACTGTCAATAGCATTTGT 60.057 43.478 0.00 0.00 0.00 2.83
5978 6617 0.035317 GAGCTGTGACACCATGACCA 59.965 55.000 2.45 0.00 0.00 4.02
6032 6671 1.893062 CCTCTGTCATCGACCAGCA 59.107 57.895 0.00 0.00 0.00 4.41
6037 6676 0.392706 TGTCATCGACCAGCACAACT 59.607 50.000 0.00 0.00 0.00 3.16
6061 6700 1.216064 AGACCCTAGCCATGATGCAA 58.784 50.000 0.00 0.00 0.00 4.08
6094 6733 2.747855 CCAAAGCTCTCCACCGCC 60.748 66.667 0.00 0.00 0.00 6.13
6112 6751 1.358877 CCGAACGATCAATCTGCACA 58.641 50.000 0.00 0.00 0.00 4.57
6116 6755 2.996249 ACGATCAATCTGCACAGGAT 57.004 45.000 0.00 0.00 0.00 3.24
6185 6824 1.380380 GGGTGCATGGGGAGAAAGG 60.380 63.158 0.00 0.00 0.00 3.11
6190 6829 0.620556 GCATGGGGAGAAAGGAGACA 59.379 55.000 0.00 0.00 0.00 3.41
6191 6830 1.004745 GCATGGGGAGAAAGGAGACAA 59.995 52.381 0.00 0.00 0.00 3.18
6254 6893 9.294030 CCTTTTCAATATCAAATTCGAAGAAGG 57.706 33.333 3.35 0.00 45.90 3.46
6256 6895 6.377327 TCAATATCAAATTCGAAGAAGGCC 57.623 37.500 3.35 0.00 45.90 5.19
6312 6952 4.868734 GGACGACCTGTATACAAGGAAAAG 59.131 45.833 21.20 13.56 0.00 2.27
6370 7010 7.702772 TCGAAACTGAACTCTCTTGCTTATATC 59.297 37.037 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.811266 CATTGTCGGAGGACCTGCG 60.811 63.158 27.83 27.83 46.23 5.18
2 3 1.021390 CACATTGTCGGAGGACCTGC 61.021 60.000 0.00 0.00 42.73 4.85
3 4 0.321671 ACACATTGTCGGAGGACCTG 59.678 55.000 0.00 0.00 42.73 4.00
90 93 8.027189 GGGACAGATTACCAAGAAACAATTTAC 58.973 37.037 0.00 0.00 0.00 2.01
107 110 0.909610 TCCAGCGAAGGGGACAGATT 60.910 55.000 0.00 0.00 0.00 2.40
159 162 0.819259 ATTTGCCTGCGTGTGTCACT 60.819 50.000 4.27 0.00 31.34 3.41
168 171 0.031857 TTTGTCACCATTTGCCTGCG 59.968 50.000 0.00 0.00 0.00 5.18
331 338 5.063880 GGTCTAAGAAGAACCTCAAGCAAA 58.936 41.667 0.00 0.00 32.87 3.68
389 397 8.939201 TCTTTCTATGAAATTACTGCTGAGAG 57.061 34.615 0.00 0.00 0.00 3.20
451 459 0.179156 TATCGAACGACCAAGACGCC 60.179 55.000 0.00 0.00 0.00 5.68
530 538 0.631753 TTGTCCAACTGACCCCCAAA 59.368 50.000 0.00 0.00 43.78 3.28
534 542 1.179174 GGCTTTGTCCAACTGACCCC 61.179 60.000 0.00 0.00 43.78 4.95
536 544 1.239347 GAGGCTTTGTCCAACTGACC 58.761 55.000 0.00 0.00 43.78 4.02
537 545 1.239347 GGAGGCTTTGTCCAACTGAC 58.761 55.000 0.00 0.00 44.72 3.51
541 549 0.823356 TGCTGGAGGCTTTGTCCAAC 60.823 55.000 0.00 0.00 43.68 3.77
566 574 1.321474 CAGGAACAGCAACACCATGT 58.679 50.000 0.00 0.00 0.00 3.21
595 603 2.157738 AGCAGAGCATTGTGGTTTCTC 58.842 47.619 0.00 0.00 0.00 2.87
690 698 1.305465 TAGACTACCAGGCGGGCAA 60.305 57.895 2.69 0.00 42.05 4.52
733 746 2.489329 CCTCAGGCATGTGGTAAACTTG 59.511 50.000 11.20 0.00 35.70 3.16
751 764 1.981256 TCAGTTGCTTTTCCCACCTC 58.019 50.000 0.00 0.00 0.00 3.85
752 765 2.452600 TTCAGTTGCTTTTCCCACCT 57.547 45.000 0.00 0.00 0.00 4.00
753 766 3.535280 TTTTCAGTTGCTTTTCCCACC 57.465 42.857 0.00 0.00 0.00 4.61
754 767 4.441792 ACATTTTCAGTTGCTTTTCCCAC 58.558 39.130 0.00 0.00 0.00 4.61
755 768 4.405358 AGACATTTTCAGTTGCTTTTCCCA 59.595 37.500 0.00 0.00 0.00 4.37
756 769 4.948847 AGACATTTTCAGTTGCTTTTCCC 58.051 39.130 0.00 0.00 0.00 3.97
757 770 6.503524 TGTAGACATTTTCAGTTGCTTTTCC 58.496 36.000 0.00 0.00 0.00 3.13
808 821 2.681848 CAGTCAAGATGCATGGTTCCTC 59.318 50.000 2.46 0.00 0.00 3.71
900 917 1.175983 TTTTGCATGGTCCGGGTCAC 61.176 55.000 0.00 0.00 0.00 3.67
922 939 7.012421 CCTTTATAAAGTGCAGATAGTGGGAAC 59.988 40.741 20.99 0.00 34.20 3.62
970 987 1.077787 CCTGCGGCTTCCAATGGTA 60.078 57.895 0.00 0.00 0.00 3.25
1122 1146 2.231380 TTTGAGGTGGAGGAGGGCC 61.231 63.158 0.00 0.00 0.00 5.80
1152 1176 2.083774 CATGACGGTAGGTTTGCATGT 58.916 47.619 0.00 0.00 0.00 3.21
1178 1202 0.595095 GTGGCAGCAGTCTTTTCCAG 59.405 55.000 0.00 0.00 0.00 3.86
1179 1203 0.183492 AGTGGCAGCAGTCTTTTCCA 59.817 50.000 0.00 0.00 0.00 3.53
1183 1207 1.228367 CCCAGTGGCAGCAGTCTTT 60.228 57.895 2.61 0.00 0.00 2.52
1185 1209 2.527624 TCCCAGTGGCAGCAGTCT 60.528 61.111 2.61 0.00 0.00 3.24
1245 1269 1.990799 CGTCGATGTTGCTGAGGTTA 58.009 50.000 0.00 0.00 0.00 2.85
1266 1290 3.740397 TCGACGCGGTGGATCGTT 61.740 61.111 12.47 0.00 39.22 3.85
1267 1291 4.471726 GTCGACGCGGTGGATCGT 62.472 66.667 12.47 0.00 42.09 3.73
1285 1309 1.837051 TGAGGTTGAGGAGTGCGGT 60.837 57.895 0.00 0.00 0.00 5.68
1311 1335 0.322975 TGGTGAGGCTCAAGCTCTTC 59.677 55.000 20.62 4.52 41.70 2.87
1318 1342 1.148273 GTGTGGTGGTGAGGCTCAA 59.852 57.895 20.62 0.82 0.00 3.02
1357 1381 0.036022 GAGGGAAGCTTGCTCAGTGT 59.964 55.000 18.04 0.00 0.00 3.55
1371 1395 1.133167 TCCAGAGTGTTCAGTGAGGGA 60.133 52.381 0.00 0.00 0.00 4.20
1374 1398 1.617850 AGCTCCAGAGTGTTCAGTGAG 59.382 52.381 0.00 0.00 0.00 3.51
1382 1406 0.617413 CCCATGAAGCTCCAGAGTGT 59.383 55.000 0.00 0.00 0.00 3.55
1385 1409 1.280133 TCAACCCATGAAGCTCCAGAG 59.720 52.381 0.00 0.00 34.30 3.35
1398 1422 2.119611 TCCGAGGAGCTCAACCCA 59.880 61.111 17.19 0.00 0.00 4.51
1418 1442 1.533273 GATAGCTCCGGGCCTACCA 60.533 63.158 0.84 0.00 43.05 3.25
1425 1449 1.337260 CCAATCGAAGATAGCTCCGGG 60.337 57.143 0.00 0.00 45.12 5.73
1441 1465 0.399454 AGCTGCCTGATATCGCCAAT 59.601 50.000 0.00 0.00 0.00 3.16
1468 1492 1.068753 CATAGCCCTCGAGGTGCAG 59.931 63.158 32.83 22.84 38.26 4.41
1472 1496 2.630580 GAGAAATCATAGCCCTCGAGGT 59.369 50.000 29.25 15.06 38.26 3.85
1503 1527 0.181350 GATTGCCGATCCAAGAGGGT 59.819 55.000 0.00 0.00 38.11 4.34
1549 1573 2.051345 GGCGAAACTGCAACCGTG 60.051 61.111 0.00 0.00 36.28 4.94
1551 1575 4.383602 CCGGCGAAACTGCAACCG 62.384 66.667 9.30 0.00 43.44 4.44
1552 1576 4.038080 CCCGGCGAAACTGCAACC 62.038 66.667 9.30 0.00 36.28 3.77
1572 1596 3.491208 GCCAATCTGATCAGGCACT 57.509 52.632 22.42 2.80 46.26 4.40
1590 1614 0.385223 GCGTCAGCTTTGCAAGAGTG 60.385 55.000 0.00 0.00 41.01 3.51
1620 1644 2.352323 CCCGGTGTAGTTGCAATTTTCC 60.352 50.000 0.59 1.63 0.00 3.13
1674 1698 4.062991 GGATACTCAACGTTGTCAACCTT 58.937 43.478 26.47 7.67 0.00 3.50
1885 1909 8.691661 ACAGAGTAATTTCCTTTTCTTAGCAA 57.308 30.769 0.00 0.00 0.00 3.91
1993 2034 4.274950 GGCAAGCAGTACACAACTAGAAAA 59.725 41.667 0.00 0.00 35.76 2.29
2008 2213 0.250901 AGGTGTGGTTAGGCAAGCAG 60.251 55.000 0.00 0.00 42.54 4.24
2078 2283 6.093404 ACTATATTTCGATGTCATAGCACCG 58.907 40.000 0.00 0.00 0.00 4.94
2124 2417 8.934023 AAAGAGTTATGGTCATAAAAAGGTCA 57.066 30.769 5.13 0.00 35.30 4.02
2263 2556 1.779025 CTATGGCTGTGTGCATCGCC 61.779 60.000 10.43 10.43 45.15 5.54
2264 2557 1.645455 CTATGGCTGTGTGCATCGC 59.355 57.895 0.00 0.00 45.15 4.58
2385 2705 9.237706 TCCCCTTCTAATTCAACCTATATTTCT 57.762 33.333 0.00 0.00 0.00 2.52
2386 2706 9.508642 CTCCCCTTCTAATTCAACCTATATTTC 57.491 37.037 0.00 0.00 0.00 2.17
2387 2707 7.945109 GCTCCCCTTCTAATTCAACCTATATTT 59.055 37.037 0.00 0.00 0.00 1.40
2388 2708 7.462590 GCTCCCCTTCTAATTCAACCTATATT 58.537 38.462 0.00 0.00 0.00 1.28
2389 2709 6.012421 GGCTCCCCTTCTAATTCAACCTATAT 60.012 42.308 0.00 0.00 0.00 0.86
2390 2710 5.309806 GGCTCCCCTTCTAATTCAACCTATA 59.690 44.000 0.00 0.00 0.00 1.31
2391 2711 4.104897 GGCTCCCCTTCTAATTCAACCTAT 59.895 45.833 0.00 0.00 0.00 2.57
2392 2712 3.458487 GGCTCCCCTTCTAATTCAACCTA 59.542 47.826 0.00 0.00 0.00 3.08
2393 2713 2.242452 GGCTCCCCTTCTAATTCAACCT 59.758 50.000 0.00 0.00 0.00 3.50
2395 2715 3.653835 AGGCTCCCCTTCTAATTCAAC 57.346 47.619 0.00 0.00 38.74 3.18
2411 2731 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2412 2732 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2413 2733 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2414 2734 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2415 2735 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2416 2736 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2417 2737 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2421 2741 2.690778 GGCGGCAGCTTTACCACTG 61.691 63.158 9.17 0.00 44.37 3.66
2422 2742 2.359975 GGCGGCAGCTTTACCACT 60.360 61.111 9.17 0.00 44.37 4.00
2423 2743 1.971695 AAGGCGGCAGCTTTACCAC 60.972 57.895 13.08 0.00 41.08 4.16
2424 2744 1.971167 CAAGGCGGCAGCTTTACCA 60.971 57.895 13.08 0.00 40.92 3.25
2425 2745 1.971695 ACAAGGCGGCAGCTTTACC 60.972 57.895 13.08 0.00 40.92 2.85
2426 2746 1.210155 CACAAGGCGGCAGCTTTAC 59.790 57.895 13.08 0.00 40.92 2.01
2427 2747 1.072332 TCACAAGGCGGCAGCTTTA 59.928 52.632 13.08 0.00 40.92 1.85
2428 2748 2.203337 TCACAAGGCGGCAGCTTT 60.203 55.556 13.08 4.21 43.84 3.51
2429 2749 2.980233 GTCACAAGGCGGCAGCTT 60.980 61.111 13.08 0.00 44.37 3.74
2432 2752 2.360350 ATGGTCACAAGGCGGCAG 60.360 61.111 13.08 5.73 0.00 4.85
2433 2753 2.672651 CATGGTCACAAGGCGGCA 60.673 61.111 13.08 0.00 0.00 5.69
2434 2754 2.359850 TCATGGTCACAAGGCGGC 60.360 61.111 0.00 0.00 0.00 6.53
2435 2755 1.746615 CCTCATGGTCACAAGGCGG 60.747 63.158 0.00 0.00 0.00 6.13
2436 2756 1.003355 ACCTCATGGTCACAAGGCG 60.003 57.895 0.00 0.00 44.78 5.52
2447 2767 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
2448 2768 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
2449 2769 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
2450 2770 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
2451 2771 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
2452 2772 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
2453 2773 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
2454 2774 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
2455 2775 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
2456 2776 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
2457 2777 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
2458 2778 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2459 2779 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2460 2780 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2461 2781 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2462 2782 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2463 2783 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2464 2784 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2465 2785 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2466 2786 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2467 2787 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2468 2788 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2469 2789 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2481 2801 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2482 2802 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2483 2803 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2484 2804 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2485 2805 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2531 2851 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2532 2852 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2533 2853 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
2534 2854 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
2535 2855 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
2557 2877 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
2559 2879 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
2582 2902 7.234355 AGCTAATTCAACCTATATTTCTGGGG 58.766 38.462 0.00 0.00 0.00 4.96
2583 2903 9.965902 ATAGCTAATTCAACCTATATTTCTGGG 57.034 33.333 0.00 0.00 0.00 4.45
2624 2966 4.875544 TGATTTTTAGGTGCGATACTGC 57.124 40.909 0.00 0.00 0.00 4.40
2778 3120 4.116926 CCCTGCATGAAAAGGGCA 57.883 55.556 13.76 0.00 46.63 5.36
3104 3446 5.763204 AGGAAGAGATTTTAAAACGTCAGCA 59.237 36.000 1.97 0.00 0.00 4.41
3106 3448 8.770828 TGTTAGGAAGAGATTTTAAAACGTCAG 58.229 33.333 1.97 0.00 0.00 3.51
3417 3759 9.778741 TGAATAATCTAATACATTCCCAGACAC 57.221 33.333 0.00 0.00 0.00 3.67
3587 3929 6.785076 TGGGAGTGATCCACTAAAATTGTTA 58.215 36.000 0.00 0.00 45.44 2.41
3623 3965 1.770061 ACGGTTAGTTTCCCACTTCCA 59.230 47.619 0.00 0.00 36.88 3.53
3639 3981 3.536956 TTCTCTCAACTTCAACACGGT 57.463 42.857 0.00 0.00 0.00 4.83
3680 4022 5.994668 GCACTCCTCTCTAATATTTTCAGGG 59.005 44.000 0.00 0.00 0.00 4.45
3701 4043 6.855914 TCAAATCTATTGTTCGAAACTTGCAC 59.144 34.615 0.00 0.00 0.00 4.57
3759 4101 9.334693 CTCTAAGTCTTGACAATTTAACAATGC 57.665 33.333 3.49 0.00 0.00 3.56
3777 4119 9.036671 GTTACCAATATCAAGAAGCTCTAAGTC 57.963 37.037 0.00 0.00 0.00 3.01
3779 4121 8.948631 TGTTACCAATATCAAGAAGCTCTAAG 57.051 34.615 0.00 0.00 0.00 2.18
3795 4137 2.365582 GCGGACCTGATTGTTACCAAT 58.634 47.619 0.00 0.00 43.97 3.16
3838 4180 2.162681 CCCGAAGCTTTGGAAGAATGT 58.837 47.619 31.24 0.00 33.23 2.71
3839 4181 2.162408 GACCCGAAGCTTTGGAAGAATG 59.838 50.000 31.24 16.78 33.23 2.67
3938 4280 5.534654 AGCCAAACAGAGTATTTGCAAACTA 59.465 36.000 15.41 5.69 36.01 2.24
4070 4412 5.415701 AGTGTCTTGATAAAATCCATGCGTT 59.584 36.000 0.00 0.00 0.00 4.84
4172 4514 4.632688 GGAAAATGGCCATCAAATGAGTTG 59.367 41.667 21.08 0.00 38.71 3.16
4187 4529 4.088634 TCCCAATTGACTCTGGAAAATGG 58.911 43.478 7.12 0.00 34.35 3.16
4189 4531 6.259123 AGATTCCCAATTGACTCTGGAAAAT 58.741 36.000 14.57 6.22 38.50 1.82
4191 4533 5.261040 AGATTCCCAATTGACTCTGGAAA 57.739 39.130 14.57 2.63 38.50 3.13
4250 4592 1.133025 GATGGCATTTGTCCCGTGAAG 59.867 52.381 0.00 0.00 0.00 3.02
4275 4617 3.641436 TCCAGCTGAGACAAGTTACTGAA 59.359 43.478 17.39 0.00 0.00 3.02
4313 4655 1.982226 TCTCCTGAAATCCGGTTCCAA 59.018 47.619 0.00 0.00 0.00 3.53
4358 4700 4.287067 AGATTCAACCAAGCAAGAGAGGTA 59.713 41.667 0.00 0.00 33.15 3.08
4418 4760 5.055265 TGGGAAATGACAAGAACTGGTTA 57.945 39.130 0.00 0.00 0.00 2.85
4477 4819 4.160439 TCTCACATTGTTTAGAGAGCGGAT 59.840 41.667 2.16 0.00 32.57 4.18
4517 4859 0.899717 GAGGGGCCAATGCACTTGAA 60.900 55.000 4.39 0.00 42.08 2.69
4694 5036 3.927854 TGTTTAGCGGTATAGCACACAA 58.072 40.909 2.37 0.00 40.15 3.33
4697 5039 3.927854 TGTTGTTTAGCGGTATAGCACA 58.072 40.909 2.37 0.00 40.15 4.57
4698 5040 4.932268 TTGTTGTTTAGCGGTATAGCAC 57.068 40.909 2.37 0.00 40.15 4.40
4699 5041 6.764085 ACATATTGTTGTTTAGCGGTATAGCA 59.236 34.615 2.37 0.00 40.15 3.49
4700 5042 7.186021 ACATATTGTTGTTTAGCGGTATAGC 57.814 36.000 0.00 0.00 37.41 2.97
4777 5119 5.733620 ATAAGTTGTCCCGTCTAACAAGA 57.266 39.130 0.00 0.00 36.14 3.02
4872 5214 9.100554 GATTCATCAATTTTGCAATCCATACAA 57.899 29.630 0.00 0.00 0.00 2.41
4952 5294 5.761003 TCCAGCATGATAAAACAATATGCG 58.239 37.500 0.00 0.00 46.38 4.73
4953 5295 6.643770 CCTTCCAGCATGATAAAACAATATGC 59.356 38.462 0.00 0.00 43.23 3.14
4999 5341 1.818674 CCCTCCCCTTTTCGTTTCATG 59.181 52.381 0.00 0.00 0.00 3.07
5004 5346 1.358051 ACCACCCTCCCCTTTTCGTT 61.358 55.000 0.00 0.00 0.00 3.85
5019 5361 2.118404 CACACACCACCACCACCAC 61.118 63.158 0.00 0.00 0.00 4.16
5020 5362 2.273776 CACACACCACCACCACCA 59.726 61.111 0.00 0.00 0.00 4.17
5022 5364 2.118404 CCACACACACCACCACCAC 61.118 63.158 0.00 0.00 0.00 4.16
5023 5365 2.273776 CCACACACACCACCACCA 59.726 61.111 0.00 0.00 0.00 4.17
5025 5367 2.518349 CCCCACACACACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
5026 5368 3.814906 CCCCCACACACACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
5046 5388 3.366052 TGCTTTTCTAAGATGACCCCC 57.634 47.619 0.00 0.00 32.92 5.40
5047 5389 4.526970 TCATGCTTTTCTAAGATGACCCC 58.473 43.478 0.00 0.00 32.92 4.95
5048 5390 5.009410 CCATCATGCTTTTCTAAGATGACCC 59.991 44.000 0.00 0.00 35.98 4.46
5049 5391 5.009410 CCCATCATGCTTTTCTAAGATGACC 59.991 44.000 0.00 0.00 35.98 4.02
5050 5392 5.009410 CCCCATCATGCTTTTCTAAGATGAC 59.991 44.000 0.00 0.00 35.98 3.06
5051 5393 5.135383 CCCCATCATGCTTTTCTAAGATGA 58.865 41.667 0.00 0.00 35.98 2.92
5052 5394 4.891756 ACCCCATCATGCTTTTCTAAGATG 59.108 41.667 0.00 0.00 32.92 2.90
5053 5395 4.891756 CACCCCATCATGCTTTTCTAAGAT 59.108 41.667 0.00 0.00 32.92 2.40
5054 5396 4.272489 CACCCCATCATGCTTTTCTAAGA 58.728 43.478 0.00 0.00 32.92 2.10
5055 5397 3.181483 GCACCCCATCATGCTTTTCTAAG 60.181 47.826 0.00 0.00 38.84 2.18
5056 5398 2.760092 GCACCCCATCATGCTTTTCTAA 59.240 45.455 0.00 0.00 38.84 2.10
5057 5399 2.291475 TGCACCCCATCATGCTTTTCTA 60.291 45.455 0.00 0.00 42.55 2.10
5058 5400 1.188863 GCACCCCATCATGCTTTTCT 58.811 50.000 0.00 0.00 38.84 2.52
5059 5401 0.896923 TGCACCCCATCATGCTTTTC 59.103 50.000 0.00 0.00 42.55 2.29
5060 5402 0.609662 GTGCACCCCATCATGCTTTT 59.390 50.000 5.22 0.00 42.55 2.27
5061 5403 0.542467 TGTGCACCCCATCATGCTTT 60.542 50.000 15.69 0.00 42.55 3.51
5062 5404 0.542467 TTGTGCACCCCATCATGCTT 60.542 50.000 15.69 0.00 42.55 3.91
5063 5405 1.077086 TTGTGCACCCCATCATGCT 59.923 52.632 15.69 0.00 42.55 3.79
5064 5406 1.216178 GTTGTGCACCCCATCATGC 59.784 57.895 15.69 0.00 42.40 4.06
5065 5407 1.243342 ACGTTGTGCACCCCATCATG 61.243 55.000 15.69 0.00 0.00 3.07
5066 5408 0.539438 AACGTTGTGCACCCCATCAT 60.539 50.000 15.69 0.00 0.00 2.45
5067 5409 1.152860 AACGTTGTGCACCCCATCA 60.153 52.632 15.69 0.00 0.00 3.07
5068 5410 1.169661 TCAACGTTGTGCACCCCATC 61.170 55.000 26.47 0.00 0.00 3.51
5069 5411 0.753479 TTCAACGTTGTGCACCCCAT 60.753 50.000 26.47 0.00 0.00 4.00
5070 5412 1.378646 TTCAACGTTGTGCACCCCA 60.379 52.632 26.47 3.00 0.00 4.96
5071 5413 1.358759 CTTCAACGTTGTGCACCCC 59.641 57.895 26.47 3.38 0.00 4.95
5072 5414 1.299089 GCTTCAACGTTGTGCACCC 60.299 57.895 29.25 3.78 0.00 4.61
5073 5415 0.592247 CAGCTTCAACGTTGTGCACC 60.592 55.000 32.53 18.63 33.67 5.01
5074 5416 0.592247 CCAGCTTCAACGTTGTGCAC 60.592 55.000 32.53 20.80 33.67 4.57
5075 5417 0.746204 TCCAGCTTCAACGTTGTGCA 60.746 50.000 32.53 19.60 33.67 4.57
5076 5418 0.040958 CTCCAGCTTCAACGTTGTGC 60.041 55.000 28.01 28.01 0.00 4.57
5077 5419 0.588252 CCTCCAGCTTCAACGTTGTG 59.412 55.000 26.47 20.41 0.00 3.33
5078 5420 0.468226 TCCTCCAGCTTCAACGTTGT 59.532 50.000 26.47 5.72 0.00 3.32
5079 5421 1.734465 GATCCTCCAGCTTCAACGTTG 59.266 52.381 22.35 22.35 0.00 4.10
5080 5422 1.347707 TGATCCTCCAGCTTCAACGTT 59.652 47.619 0.00 0.00 0.00 3.99
5081 5423 0.976641 TGATCCTCCAGCTTCAACGT 59.023 50.000 0.00 0.00 0.00 3.99
5082 5424 2.099141 TTGATCCTCCAGCTTCAACG 57.901 50.000 0.00 0.00 0.00 4.10
5083 5425 3.416156 AGTTTGATCCTCCAGCTTCAAC 58.584 45.455 0.00 0.00 0.00 3.18
5084 5426 3.795688 AGTTTGATCCTCCAGCTTCAA 57.204 42.857 0.00 0.00 0.00 2.69
5085 5427 3.795688 AAGTTTGATCCTCCAGCTTCA 57.204 42.857 0.00 0.00 0.00 3.02
5086 5428 6.823689 TGTAATAAGTTTGATCCTCCAGCTTC 59.176 38.462 0.00 0.00 0.00 3.86
5087 5429 6.721318 TGTAATAAGTTTGATCCTCCAGCTT 58.279 36.000 0.00 0.00 0.00 3.74
5088 5430 6.313519 TGTAATAAGTTTGATCCTCCAGCT 57.686 37.500 0.00 0.00 0.00 4.24
5089 5431 6.016777 CCATGTAATAAGTTTGATCCTCCAGC 60.017 42.308 0.00 0.00 0.00 4.85
5095 5693 6.699575 AGTGCCATGTAATAAGTTTGATCC 57.300 37.500 0.00 0.00 0.00 3.36
5124 5723 6.491383 TCTGACCCTAGTACTATGTTCTGTT 58.509 40.000 2.33 0.00 0.00 3.16
5188 5789 7.278868 GTCTCCATACAAAGAGGTACTTCATTG 59.721 40.741 18.09 18.09 41.55 2.82
5198 5799 4.764172 CTCTTGGTCTCCATACAAAGAGG 58.236 47.826 11.66 0.00 46.95 3.69
5236 5837 6.293135 CCTGAGAACTAAACAAACAGAGAAGC 60.293 42.308 0.00 0.00 0.00 3.86
5428 6029 7.331791 GGATGATAAACTCCAGTTGTACTTCT 58.668 38.462 0.00 0.00 38.44 2.85
5471 6072 8.038944 ACTTTATTTTTACTCCGCATCACTCTA 58.961 33.333 0.00 0.00 0.00 2.43
5498 6099 9.952030 TTTGTTTGGAAAAGGAGAAAAATACTT 57.048 25.926 0.00 0.00 0.00 2.24
5537 6140 3.266510 TGATCCACTCCAAGTACATGC 57.733 47.619 0.00 0.00 0.00 4.06
5561 6164 6.239217 TCTCATCTTGTATGCAACCTACAT 57.761 37.500 0.00 0.00 0.00 2.29
5636 6239 9.624697 TTATTGTCAAAACTGCACATAATTCTC 57.375 29.630 0.00 0.00 0.00 2.87
5782 6411 4.946784 ATTACTTGTCGCAGAAATGGAC 57.053 40.909 0.00 0.00 39.69 4.02
5805 6441 2.842936 ATTACTCCCTCCGCCCCG 60.843 66.667 0.00 0.00 0.00 5.73
5806 6442 0.178941 TAGATTACTCCCTCCGCCCC 60.179 60.000 0.00 0.00 0.00 5.80
5810 6446 2.292845 GGAACGTAGATTACTCCCTCCG 59.707 54.545 0.00 0.00 0.00 4.63
5812 6448 3.698040 TGTGGAACGTAGATTACTCCCTC 59.302 47.826 0.00 0.00 42.39 4.30
5815 6451 4.813027 TGTTGTGGAACGTAGATTACTCC 58.187 43.478 0.00 0.00 42.39 3.85
5816 6452 5.467705 ACTGTTGTGGAACGTAGATTACTC 58.532 41.667 0.00 0.00 42.39 2.59
5886 6524 4.584327 ACTTACCCAACAGAACAAATGC 57.416 40.909 0.00 0.00 0.00 3.56
5888 6527 7.057894 TGAAGTACTTACCCAACAGAACAAAT 58.942 34.615 8.42 0.00 0.00 2.32
5893 6532 5.280317 GGGATGAAGTACTTACCCAACAGAA 60.280 44.000 26.53 2.17 37.50 3.02
5978 6617 1.595466 TTTAACAATGGCACGACCGT 58.405 45.000 0.00 0.00 43.94 4.83
6094 6733 1.325640 CCTGTGCAGATTGATCGTTCG 59.674 52.381 0.02 0.00 0.00 3.95
6103 6742 3.813240 GCCATGGATATCCTGTGCAGATT 60.813 47.826 22.35 0.00 36.82 2.40
6112 6751 3.262915 GCTCTAACAGCCATGGATATCCT 59.737 47.826 22.35 0.00 43.17 3.24
6168 6807 0.394899 CTCCTTTCTCCCCATGCACC 60.395 60.000 0.00 0.00 0.00 5.01
6185 6824 3.826729 ACATTGGTTAGGCCTTTTGTCTC 59.173 43.478 12.58 0.00 38.35 3.36
6190 6829 4.479158 TGAGAACATTGGTTAGGCCTTTT 58.521 39.130 12.58 0.00 37.36 2.27
6191 6830 4.112634 TGAGAACATTGGTTAGGCCTTT 57.887 40.909 12.58 0.00 37.36 3.11
6238 6877 2.291540 TGGGGCCTTCTTCGAATTTGAT 60.292 45.455 0.84 0.00 0.00 2.57
6256 6895 1.227853 GTACAAGCCGGCCTATGGG 60.228 63.158 26.15 8.98 0.00 4.00
6269 6908 0.976641 CTGAGACCAGGGCTGTACAA 59.023 55.000 0.00 0.00 36.77 2.41
6312 6952 6.602278 AGAAATATAAGCAAGAGGGTTACCC 58.398 40.000 13.56 13.56 45.90 3.69
6340 6980 6.223852 AGCAAGAGAGTTCAGTTTCGAAATA 58.776 36.000 14.69 0.06 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.