Multiple sequence alignment - TraesCS6B01G093300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G093300 chr6B 100.000 6594 0 0 1 6594 69447915 69441322 0.000000e+00 12177.0
1 TraesCS6B01G093300 chr6B 84.539 608 41 22 431 1006 687128864 687128278 2.690000e-153 553.0
2 TraesCS6B01G093300 chr6B 84.127 567 64 19 134 689 652981867 652981316 5.860000e-145 525.0
3 TraesCS6B01G093300 chr6B 85.684 468 31 16 572 1006 518382107 518381643 1.680000e-125 460.0
4 TraesCS6B01G093300 chr6B 86.067 445 38 11 134 577 518384100 518383679 2.170000e-124 457.0
5 TraesCS6B01G093300 chr6B 88.715 319 33 3 3413 3730 377933316 377933632 2.880000e-103 387.0
6 TraesCS6B01G093300 chr6B 93.056 144 10 0 1 144 687129021 687128878 1.860000e-50 211.0
7 TraesCS6B01G093300 chr6B 80.426 235 33 5 6240 6461 319538671 319538905 4.090000e-37 167.0
8 TraesCS6B01G093300 chr6B 100.000 30 0 0 6193 6222 319538641 319538670 1.000000e-03 56.5
9 TraesCS6B01G093300 chr4D 95.103 2634 88 21 3413 6019 280179818 280182437 0.000000e+00 4111.0
10 TraesCS6B01G093300 chr4D 93.730 2536 97 29 3413 5937 108628565 108626081 0.000000e+00 3746.0
11 TraesCS6B01G093300 chr4D 92.569 1238 28 17 1006 2231 108631151 108629966 0.000000e+00 1718.0
12 TraesCS6B01G093300 chr4D 92.847 713 17 10 1006 1707 280176038 280176727 0.000000e+00 1003.0
13 TraesCS6B01G093300 chr4D 96.769 588 10 4 2387 2972 280178408 280178988 0.000000e+00 972.0
14 TraesCS6B01G093300 chr4D 96.416 586 12 5 2387 2972 108629969 108629393 0.000000e+00 957.0
15 TraesCS6B01G093300 chr4D 98.398 437 7 0 2969 3405 280179037 280179473 0.000000e+00 769.0
16 TraesCS6B01G093300 chr4D 97.696 434 8 1 2972 3405 108629340 108628909 0.000000e+00 745.0
17 TraesCS6B01G093300 chr4D 90.019 531 18 11 1703 2231 280177914 280178411 0.000000e+00 654.0
18 TraesCS6B01G093300 chr4D 83.108 444 26 10 6021 6456 280182502 280182904 6.290000e-95 359.0
19 TraesCS6B01G093300 chr4D 90.698 172 14 2 2229 2399 437295925 437295755 1.850000e-55 228.0
20 TraesCS6B01G093300 chr4D 89.130 138 5 2 6457 6594 280182932 280183059 5.290000e-36 163.0
21 TraesCS6B01G093300 chr4D 80.000 255 17 14 6332 6552 108610344 108610090 2.460000e-34 158.0
22 TraesCS6B01G093300 chr4D 87.619 105 5 4 6240 6337 108625523 108625420 1.500000e-21 115.0
23 TraesCS6B01G093300 chr4D 97.727 44 1 0 6551 6594 108610038 108609995 7.090000e-10 76.8
24 TraesCS6B01G093300 chr4A 95.123 2481 93 17 3413 5880 467684316 467686781 0.000000e+00 3886.0
25 TraesCS6B01G093300 chr4A 93.341 871 18 14 1006 1864 467681572 467682414 0.000000e+00 1251.0
26 TraesCS6B01G093300 chr4A 96.246 586 12 4 2387 2972 467682912 467683487 0.000000e+00 952.0
27 TraesCS6B01G093300 chr4A 97.025 437 12 1 2969 3405 467683537 467683972 0.000000e+00 734.0
28 TraesCS6B01G093300 chr4A 90.608 362 10 6 1870 2231 467682578 467682915 6.030000e-125 459.0
29 TraesCS6B01G093300 chr4A 82.405 449 45 11 6021 6456 467749166 467749593 1.750000e-95 361.0
30 TraesCS6B01G093300 chr4A 100.000 46 0 0 6549 6594 450323662 450323617 1.180000e-12 86.1
31 TraesCS6B01G093300 chr4A 97.826 46 1 0 6549 6594 281701942 281701987 5.480000e-11 80.5
32 TraesCS6B01G093300 chr7B 95.536 1008 40 5 1 1005 707527835 707528840 0.000000e+00 1607.0
33 TraesCS6B01G093300 chr7B 80.344 407 49 12 6063 6456 592178557 592178169 5.040000e-71 279.0
34 TraesCS6B01G093300 chr7B 94.215 121 6 1 3284 3404 173229520 173229639 4.060000e-42 183.0
35 TraesCS6B01G093300 chr7B 87.342 158 19 1 4236 4392 453623447 453623290 5.250000e-41 180.0
36 TraesCS6B01G093300 chr7B 91.304 46 4 0 756 801 18313888 18313843 5.520000e-06 63.9
37 TraesCS6B01G093300 chr3A 92.747 1034 40 11 1 1005 565531670 565532697 0.000000e+00 1461.0
38 TraesCS6B01G093300 chr2D 89.846 975 44 17 65 1005 131645117 131644164 0.000000e+00 1201.0
39 TraesCS6B01G093300 chr2D 85.992 257 34 2 3744 3999 177460083 177459828 2.340000e-69 274.0
40 TraesCS6B01G093300 chr2D 86.100 259 28 6 3744 3999 633320460 633320713 8.430000e-69 272.0
41 TraesCS6B01G093300 chr2D 94.231 156 9 0 2229 2384 87407524 87407369 8.550000e-59 239.0
42 TraesCS6B01G093300 chr2D 87.879 66 3 4 943 1005 391384907 391384844 9.170000e-09 73.1
43 TraesCS6B01G093300 chr1D 89.087 898 59 13 116 982 487351937 487352826 0.000000e+00 1079.0
44 TraesCS6B01G093300 chr1D 97.826 46 1 0 6549 6594 293328740 293328695 5.480000e-11 80.5
45 TraesCS6B01G093300 chr6D 87.969 906 65 24 134 1006 16855300 16856194 0.000000e+00 1029.0
46 TraesCS6B01G093300 chr6D 88.438 320 32 5 3413 3730 276144710 276144394 1.340000e-101 381.0
47 TraesCS6B01G093300 chr6D 87.774 319 37 2 3413 3730 251232810 251232493 8.080000e-99 372.0
48 TraesCS6B01G093300 chr6D 81.863 408 40 14 6063 6456 361546023 361546410 4.960000e-81 313.0
49 TraesCS6B01G093300 chr6D 85.603 257 35 2 3744 3999 175718544 175718289 1.090000e-67 268.0
50 TraesCS6B01G093300 chr6D 77.544 285 39 9 6063 6339 361627807 361628074 1.480000e-31 148.0
51 TraesCS6B01G093300 chr6D 90.625 64 4 2 943 1005 464649020 464648958 4.240000e-12 84.2
52 TraesCS6B01G093300 chr1B 83.979 568 66 18 131 689 562562354 562562905 7.580000e-144 521.0
53 TraesCS6B01G093300 chr1B 80.785 713 80 30 4 689 557465997 557465315 7.630000e-139 505.0
54 TraesCS6B01G093300 chr1B 82.520 246 31 10 758 997 557465019 557464780 8.670000e-49 206.0
55 TraesCS6B01G093300 chr1B 94.215 121 6 1 3285 3405 415552093 415551974 4.060000e-42 183.0
56 TraesCS6B01G093300 chr1B 91.228 57 3 2 943 998 52752036 52752091 7.090000e-10 76.8
57 TraesCS6B01G093300 chr1B 80.412 97 19 0 6063 6159 679238091 679237995 2.550000e-09 75.0
58 TraesCS6B01G093300 chr1B 100.000 32 0 0 6193 6224 679215393 679215362 7.140000e-05 60.2
59 TraesCS6B01G093300 chr6A 87.461 319 35 5 3413 3730 294645374 294645688 4.860000e-96 363.0
60 TraesCS6B01G093300 chr6A 87.147 319 39 2 3413 3730 344188030 344188347 1.750000e-95 361.0
61 TraesCS6B01G093300 chr6A 79.500 400 48 16 6063 6447 502736837 502737217 3.050000e-63 254.0
62 TraesCS6B01G093300 chr6A 91.270 126 10 1 3275 3399 579055174 579055299 3.160000e-38 171.0
63 TraesCS6B01G093300 chr6A 97.826 46 1 0 6549 6594 502737400 502737445 5.480000e-11 80.5
64 TraesCS6B01G093300 chr2B 87.147 319 36 3 3413 3730 333042523 333042837 2.260000e-94 357.0
65 TraesCS6B01G093300 chr2B 88.327 257 27 3 3744 3999 234367961 234367707 8.310000e-79 305.0
66 TraesCS6B01G093300 chr2B 88.889 63 7 0 943 1005 53087280 53087342 1.970000e-10 78.7
67 TraesCS6B01G093300 chr5D 87.597 258 30 2 3746 4002 201664577 201664321 1.390000e-76 298.0
68 TraesCS6B01G093300 chr5D 95.597 159 6 1 2229 2386 266355709 266355867 3.050000e-63 254.0
69 TraesCS6B01G093300 chr5D 88.199 161 16 2 4237 4395 215301981 215302140 8.730000e-44 189.0
70 TraesCS6B01G093300 chr2A 86.434 258 32 3 3744 3999 190317508 190317252 5.040000e-71 279.0
71 TraesCS6B01G093300 chr2A 89.542 153 14 1 4240 4392 329688022 329688172 6.750000e-45 193.0
72 TraesCS6B01G093300 chr3B 78.571 406 55 10 6063 6454 433398872 433399259 8.550000e-59 239.0
73 TraesCS6B01G093300 chr3B 90.751 173 12 4 2229 2400 436529439 436529608 1.850000e-55 228.0
74 TraesCS6B01G093300 chr3B 91.124 169 13 2 2229 2395 581974922 581974754 1.850000e-55 228.0
75 TraesCS6B01G093300 chr3B 97.826 46 1 0 6549 6594 410104421 410104466 5.480000e-11 80.5
76 TraesCS6B01G093300 chr3B 97.826 46 1 0 6549 6594 412222140 412222185 5.480000e-11 80.5
77 TraesCS6B01G093300 chrUn 93.082 159 11 0 2226 2384 141680744 141680902 3.980000e-57 233.0
78 TraesCS6B01G093300 chr5B 93.590 156 10 0 2229 2384 102630134 102629979 3.980000e-57 233.0
79 TraesCS6B01G093300 chr5B 92.638 163 11 1 2229 2390 377698128 377698290 3.980000e-57 233.0
80 TraesCS6B01G093300 chr5B 90.286 175 15 2 2229 2402 442783301 442783474 1.850000e-55 228.0
81 TraesCS6B01G093300 chr7D 90.132 152 15 0 4242 4393 156796841 156796992 1.450000e-46 198.0
82 TraesCS6B01G093300 chr7D 87.342 158 19 1 4236 4392 436961952 436961795 5.250000e-41 180.0
83 TraesCS6B01G093300 chr7D 92.623 122 8 1 3284 3405 42220758 42220878 2.440000e-39 174.0
84 TraesCS6B01G093300 chr7A 89.542 153 16 0 4240 4392 462978739 462978587 1.880000e-45 195.0
85 TraesCS6B01G093300 chr7A 92.000 125 9 1 3281 3405 694496887 694496764 2.440000e-39 174.0
86 TraesCS6B01G093300 chr5A 92.623 122 8 1 3284 3405 535518763 535518643 2.440000e-39 174.0
87 TraesCS6B01G093300 chr5A 87.324 71 7 2 2702 2771 642914198 642914129 5.480000e-11 80.5
88 TraesCS6B01G093300 chr3D 83.193 119 19 1 6064 6181 199584966 199585084 2.510000e-19 108.0
89 TraesCS6B01G093300 chr3D 97.826 46 0 1 6549 6594 115941569 115941525 1.970000e-10 78.7
90 TraesCS6B01G093300 chr4B 97.778 45 1 0 6549 6593 634400379 634400335 1.970000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G093300 chr6B 69441322 69447915 6593 True 12177.000000 12177 100.000000 1 6594 1 chr6B.!!$R1 6593
1 TraesCS6B01G093300 chr6B 652981316 652981867 551 True 525.000000 525 84.127000 134 689 1 chr6B.!!$R2 555
2 TraesCS6B01G093300 chr6B 518381643 518384100 2457 True 458.500000 460 85.875500 134 1006 2 chr6B.!!$R3 872
3 TraesCS6B01G093300 chr6B 687128278 687129021 743 True 382.000000 553 88.797500 1 1006 2 chr6B.!!$R4 1005
4 TraesCS6B01G093300 chr4D 108625420 108631151 5731 True 1456.200000 3746 93.606000 1006 6337 5 chr4D.!!$R3 5331
5 TraesCS6B01G093300 chr4D 280176038 280183059 7021 False 1147.285714 4111 92.196286 1006 6594 7 chr4D.!!$F1 5588
6 TraesCS6B01G093300 chr4A 467681572 467686781 5209 False 1456.400000 3886 94.468600 1006 5880 5 chr4A.!!$F3 4874
7 TraesCS6B01G093300 chr7B 707527835 707528840 1005 False 1607.000000 1607 95.536000 1 1005 1 chr7B.!!$F2 1004
8 TraesCS6B01G093300 chr3A 565531670 565532697 1027 False 1461.000000 1461 92.747000 1 1005 1 chr3A.!!$F1 1004
9 TraesCS6B01G093300 chr2D 131644164 131645117 953 True 1201.000000 1201 89.846000 65 1005 1 chr2D.!!$R2 940
10 TraesCS6B01G093300 chr1D 487351937 487352826 889 False 1079.000000 1079 89.087000 116 982 1 chr1D.!!$F1 866
11 TraesCS6B01G093300 chr6D 16855300 16856194 894 False 1029.000000 1029 87.969000 134 1006 1 chr6D.!!$F1 872
12 TraesCS6B01G093300 chr1B 562562354 562562905 551 False 521.000000 521 83.979000 131 689 1 chr1B.!!$F2 558
13 TraesCS6B01G093300 chr1B 557464780 557465997 1217 True 355.500000 505 81.652500 4 997 2 chr1B.!!$R4 993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 1.082756 CGAGTTTGTGCTGGAACGC 60.083 57.895 0.0 0.0 0.00 4.84 F
1648 3606 0.105964 TGTCGGGTGAGGTCAACTTG 59.894 55.000 0.0 0.0 33.16 3.16 F
2233 5540 0.035915 GGTTGCTCTCTTCCACTCCC 60.036 60.000 0.0 0.0 0.00 4.30 F
2239 5546 0.114560 TCTCTTCCACTCCCTCCGTT 59.885 55.000 0.0 0.0 0.00 4.44 F
2243 5550 0.410663 TTCCACTCCCTCCGTTCCTA 59.589 55.000 0.0 0.0 0.00 2.94 F
2245 5552 1.203212 TCCACTCCCTCCGTTCCTAAA 60.203 52.381 0.0 0.0 0.00 1.85 F
3042 6404 1.837439 TGTCTAGATTGGGATGGCGTT 59.163 47.619 0.0 0.0 0.00 4.84 F
4782 8486 3.060363 CGCTCGTAACACTTGGTCATTAC 59.940 47.826 0.0 0.0 0.00 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 5261 0.035317 CTACCAGCAACTGACCTGCA 59.965 55.000 0.00 0.00 42.48 4.41 R
2769 6076 1.069906 CCACAGCGGAAGACTTTTTCG 60.070 52.381 0.00 0.00 36.56 3.46 R
3716 7415 1.401552 GACAAGTTGAAGCAGCACACA 59.598 47.619 10.54 0.00 0.00 3.72 R
3902 7602 4.631740 TGAGAGGGGTCGGCCACA 62.632 66.667 12.87 0.00 41.86 4.17 R
4127 7827 4.759693 CCTTACACTAAAACATGCACTGGA 59.240 41.667 0.00 0.00 0.00 3.86 R
4134 7834 5.058149 TGCATGCCTTACACTAAAACATG 57.942 39.130 16.68 0.00 35.65 3.21 R
4918 8622 2.238144 AGCATGCATGAGTACCTTCACT 59.762 45.455 30.64 10.38 0.00 3.41 R
5973 9734 0.039618 GGGAAAGGATGTGGGCAAGA 59.960 55.000 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.186826 GTGTGCTGGTCGCCTTGTT 61.187 57.895 0.00 0.00 38.05 2.83
28 29 1.891919 GTGCTGGTCGCCTTGTTCA 60.892 57.895 0.00 0.00 38.05 3.18
129 130 1.082756 CGAGTTTGTGCTGGAACGC 60.083 57.895 0.00 0.00 0.00 4.84
274 281 4.164030 ACCTCTTTTGGTTTTTGCTGGAAT 59.836 37.500 0.00 0.00 36.89 3.01
616 2236 9.155975 TGTTAGAACAATTTTTGCTTTTTGCTA 57.844 25.926 0.00 0.00 38.10 3.49
849 2774 4.008933 GGGCTGCGTGAGTGAGGT 62.009 66.667 0.00 0.00 0.00 3.85
850 2775 2.740055 GGCTGCGTGAGTGAGGTG 60.740 66.667 0.00 0.00 0.00 4.00
860 2786 1.841302 GAGTGAGGTGGGGATGTGCA 61.841 60.000 0.00 0.00 0.00 4.57
907 2840 7.167535 TGTTTCCACATGATGTATCAGAGAAA 58.832 34.615 0.00 0.00 40.64 2.52
951 2897 4.250464 ACAAAGAATTGCTATCGAACGGA 58.750 39.130 0.00 0.00 40.34 4.69
975 2921 1.309499 CGCTGACCGGCCCAAATTTA 61.309 55.000 0.00 0.00 0.00 1.40
1008 2954 2.359230 GCCTATCAGCGCCCATCC 60.359 66.667 2.29 0.00 0.00 3.51
1009 2955 2.047844 CCTATCAGCGCCCATCCG 60.048 66.667 2.29 0.00 0.00 4.18
1010 2956 2.047844 CTATCAGCGCCCATCCGG 60.048 66.667 2.29 0.00 0.00 5.14
1011 2957 2.523168 TATCAGCGCCCATCCGGA 60.523 61.111 6.61 6.61 0.00 5.14
1012 2958 1.892819 CTATCAGCGCCCATCCGGAT 61.893 60.000 12.38 12.38 0.00 4.18
1013 2959 1.480212 TATCAGCGCCCATCCGGATT 61.480 55.000 16.19 0.00 0.00 3.01
1014 2960 3.282157 CAGCGCCCATCCGGATTG 61.282 66.667 16.19 11.97 0.00 2.67
1017 2963 4.189580 CGCCCATCCGGATTGGGT 62.190 66.667 33.94 10.63 44.50 4.51
1082 3028 1.342074 CCAAGCTCCCCGATATCTCA 58.658 55.000 0.34 0.00 0.00 3.27
1083 3029 1.001406 CCAAGCTCCCCGATATCTCAC 59.999 57.143 0.34 0.00 0.00 3.51
1084 3030 1.967066 CAAGCTCCCCGATATCTCACT 59.033 52.381 0.34 0.00 0.00 3.41
1085 3031 1.917872 AGCTCCCCGATATCTCACTC 58.082 55.000 0.34 0.00 0.00 3.51
1086 3032 0.892063 GCTCCCCGATATCTCACTCC 59.108 60.000 0.34 0.00 0.00 3.85
1438 3386 1.286260 GCGGCGTAGGTAGGAGATG 59.714 63.158 9.37 0.00 0.00 2.90
1505 3453 3.688694 AAGCTCCGTACATTGTTGGTA 57.311 42.857 0.00 0.00 0.00 3.25
1506 3454 3.906720 AGCTCCGTACATTGTTGGTAT 57.093 42.857 0.00 0.00 0.00 2.73
1507 3455 3.793559 AGCTCCGTACATTGTTGGTATC 58.206 45.455 0.00 0.00 0.00 2.24
1508 3456 3.451178 AGCTCCGTACATTGTTGGTATCT 59.549 43.478 0.00 0.00 0.00 1.98
1648 3606 0.105964 TGTCGGGTGAGGTCAACTTG 59.894 55.000 0.00 0.00 33.16 3.16
1718 4867 2.916111 CGTCTGTTTCACCCGAAATTG 58.084 47.619 0.00 0.00 42.90 2.32
1729 4878 2.374170 ACCCGAAATTGACCTGTAACCT 59.626 45.455 0.00 0.00 0.00 3.50
1732 4881 2.811431 CGAAATTGACCTGTAACCTGCA 59.189 45.455 0.00 0.00 0.00 4.41
1735 4884 0.250727 TTGACCTGTAACCTGCAGCC 60.251 55.000 8.66 0.00 32.93 4.85
1736 4885 1.741770 GACCTGTAACCTGCAGCCG 60.742 63.158 8.66 0.00 32.93 5.52
1737 4886 3.127533 CCTGTAACCTGCAGCCGC 61.128 66.667 8.66 0.00 39.24 6.53
1864 5013 7.477945 TGCATCTCATGTCAGTCTGATATAT 57.522 36.000 11.36 0.49 0.00 0.86
1865 5014 8.585471 TGCATCTCATGTCAGTCTGATATATA 57.415 34.615 11.36 3.40 0.00 0.86
1866 5015 8.684520 TGCATCTCATGTCAGTCTGATATATAG 58.315 37.037 11.36 11.62 0.00 1.31
1867 5016 8.901793 GCATCTCATGTCAGTCTGATATATAGA 58.098 37.037 18.29 18.29 30.06 1.98
1943 5250 9.397280 CTAGATATTGATCGTGTAGGATCCTTA 57.603 37.037 22.03 6.97 41.71 2.69
1945 5252 8.908903 AGATATTGATCGTGTAGGATCCTTATC 58.091 37.037 22.03 15.72 41.71 1.75
2012 5319 4.218417 GGAAAATTAAGACAAGGCTGCTCA 59.782 41.667 0.00 0.00 0.00 4.26
2058 5365 2.101917 CCTTATTTGGCAAGCAGGATGG 59.898 50.000 13.49 2.96 35.86 3.51
2078 5385 3.181434 TGGGAGTGTTTTGCAGGTAATCT 60.181 43.478 0.00 0.00 0.00 2.40
2079 5386 3.826729 GGGAGTGTTTTGCAGGTAATCTT 59.173 43.478 0.00 0.00 0.00 2.40
2080 5387 5.007682 GGGAGTGTTTTGCAGGTAATCTTA 58.992 41.667 0.00 0.00 0.00 2.10
2081 5388 5.475564 GGGAGTGTTTTGCAGGTAATCTTAA 59.524 40.000 0.00 0.00 0.00 1.85
2099 5406 8.970859 AATCTTAATTACATCAACAGCTAGCT 57.029 30.769 12.68 12.68 0.00 3.32
2140 5447 5.244402 TCCAAACTGTGACTTCCTTATACGA 59.756 40.000 0.00 0.00 0.00 3.43
2141 5448 5.577164 CCAAACTGTGACTTCCTTATACGAG 59.423 44.000 0.00 0.00 0.00 4.18
2142 5449 5.979288 AACTGTGACTTCCTTATACGAGT 57.021 39.130 0.00 0.00 0.00 4.18
2143 5450 5.312120 ACTGTGACTTCCTTATACGAGTG 57.688 43.478 0.00 0.00 0.00 3.51
2192 5499 0.093705 GACACGAGAAATGCTGACGC 59.906 55.000 0.00 0.00 0.00 5.19
2227 5534 2.851195 TGTTTGAGGTTGCTCTCTTCC 58.149 47.619 0.00 0.00 34.98 3.46
2228 5535 2.172505 TGTTTGAGGTTGCTCTCTTCCA 59.827 45.455 0.00 0.00 34.98 3.53
2229 5536 2.550180 GTTTGAGGTTGCTCTCTTCCAC 59.450 50.000 0.00 0.00 34.98 4.02
2230 5537 1.722034 TGAGGTTGCTCTCTTCCACT 58.278 50.000 0.00 0.00 34.98 4.00
2231 5538 1.620819 TGAGGTTGCTCTCTTCCACTC 59.379 52.381 0.00 0.00 34.98 3.51
2232 5539 0.980423 AGGTTGCTCTCTTCCACTCC 59.020 55.000 0.00 0.00 0.00 3.85
2233 5540 0.035915 GGTTGCTCTCTTCCACTCCC 60.036 60.000 0.00 0.00 0.00 4.30
2234 5541 0.980423 GTTGCTCTCTTCCACTCCCT 59.020 55.000 0.00 0.00 0.00 4.20
2235 5542 1.066502 GTTGCTCTCTTCCACTCCCTC 60.067 57.143 0.00 0.00 0.00 4.30
2236 5543 0.616111 TGCTCTCTTCCACTCCCTCC 60.616 60.000 0.00 0.00 0.00 4.30
2237 5544 1.671901 GCTCTCTTCCACTCCCTCCG 61.672 65.000 0.00 0.00 0.00 4.63
2238 5545 0.323908 CTCTCTTCCACTCCCTCCGT 60.324 60.000 0.00 0.00 0.00 4.69
2239 5546 0.114560 TCTCTTCCACTCCCTCCGTT 59.885 55.000 0.00 0.00 0.00 4.44
2240 5547 0.533032 CTCTTCCACTCCCTCCGTTC 59.467 60.000 0.00 0.00 0.00 3.95
2241 5548 0.903454 TCTTCCACTCCCTCCGTTCC 60.903 60.000 0.00 0.00 0.00 3.62
2242 5549 0.905337 CTTCCACTCCCTCCGTTCCT 60.905 60.000 0.00 0.00 0.00 3.36
2243 5550 0.410663 TTCCACTCCCTCCGTTCCTA 59.589 55.000 0.00 0.00 0.00 2.94
2244 5551 0.410663 TCCACTCCCTCCGTTCCTAA 59.589 55.000 0.00 0.00 0.00 2.69
2245 5552 1.203212 TCCACTCCCTCCGTTCCTAAA 60.203 52.381 0.00 0.00 0.00 1.85
2246 5553 1.838077 CCACTCCCTCCGTTCCTAAAT 59.162 52.381 0.00 0.00 0.00 1.40
2247 5554 3.036091 CCACTCCCTCCGTTCCTAAATA 58.964 50.000 0.00 0.00 0.00 1.40
2248 5555 3.646637 CCACTCCCTCCGTTCCTAAATAT 59.353 47.826 0.00 0.00 0.00 1.28
2249 5556 4.836736 CCACTCCCTCCGTTCCTAAATATA 59.163 45.833 0.00 0.00 0.00 0.86
2250 5557 5.306160 CCACTCCCTCCGTTCCTAAATATAA 59.694 44.000 0.00 0.00 0.00 0.98
2251 5558 6.456501 CACTCCCTCCGTTCCTAAATATAAG 58.543 44.000 0.00 0.00 0.00 1.73
2252 5559 6.041751 CACTCCCTCCGTTCCTAAATATAAGT 59.958 42.308 0.00 0.00 0.00 2.24
2253 5560 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2254 5561 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2255 5562 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2256 5563 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2257 5564 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2258 5565 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2275 5582 9.847224 AAGTCTTTTTAGAGATTCCACTACAAA 57.153 29.630 0.00 0.00 0.00 2.83
2276 5583 9.274206 AGTCTTTTTAGAGATTCCACTACAAAC 57.726 33.333 0.00 0.00 0.00 2.93
2277 5584 9.274206 GTCTTTTTAGAGATTCCACTACAAACT 57.726 33.333 0.00 0.00 0.00 2.66
2280 5587 8.752766 TTTTAGAGATTCCACTACAAACTACG 57.247 34.615 0.00 0.00 0.00 3.51
2281 5588 5.979288 AGAGATTCCACTACAAACTACGT 57.021 39.130 0.00 0.00 0.00 3.57
2282 5589 8.565896 TTAGAGATTCCACTACAAACTACGTA 57.434 34.615 0.00 0.00 0.00 3.57
2283 5590 6.850555 AGAGATTCCACTACAAACTACGTAC 58.149 40.000 0.00 0.00 0.00 3.67
2284 5591 5.634896 AGATTCCACTACAAACTACGTACG 58.365 41.667 15.01 15.01 0.00 3.67
2285 5592 3.829886 TCCACTACAAACTACGTACGG 57.170 47.619 21.06 5.00 0.00 4.02
2286 5593 3.407698 TCCACTACAAACTACGTACGGA 58.592 45.455 21.06 10.81 0.00 4.69
2287 5594 4.009675 TCCACTACAAACTACGTACGGAT 58.990 43.478 21.06 1.34 0.00 4.18
2288 5595 4.100529 CCACTACAAACTACGTACGGATG 58.899 47.826 21.06 9.21 0.00 3.51
2289 5596 3.545078 CACTACAAACTACGTACGGATGC 59.455 47.826 21.06 0.00 0.00 3.91
2290 5597 2.728690 ACAAACTACGTACGGATGCA 57.271 45.000 21.06 0.00 0.00 3.96
2291 5598 3.241067 ACAAACTACGTACGGATGCAT 57.759 42.857 21.06 0.00 0.00 3.96
2292 5599 4.374843 ACAAACTACGTACGGATGCATA 57.625 40.909 21.06 0.30 0.00 3.14
2293 5600 4.940463 ACAAACTACGTACGGATGCATAT 58.060 39.130 21.06 0.00 0.00 1.78
2294 5601 6.075762 ACAAACTACGTACGGATGCATATA 57.924 37.500 21.06 0.00 0.00 0.86
2295 5602 6.147581 ACAAACTACGTACGGATGCATATAG 58.852 40.000 21.06 11.46 0.00 1.31
2296 5603 6.016860 ACAAACTACGTACGGATGCATATAGA 60.017 38.462 21.06 0.00 0.00 1.98
2297 5604 5.542616 ACTACGTACGGATGCATATAGAC 57.457 43.478 21.06 0.00 0.00 2.59
2298 5605 4.999311 ACTACGTACGGATGCATATAGACA 59.001 41.667 21.06 0.00 0.00 3.41
2299 5606 5.646793 ACTACGTACGGATGCATATAGACAT 59.353 40.000 21.06 0.00 0.00 3.06
2300 5607 4.733850 ACGTACGGATGCATATAGACATG 58.266 43.478 21.06 0.00 0.00 3.21
2312 5619 7.114882 GCATATAGACATGCTTTAGAGTGTG 57.885 40.000 0.00 0.00 46.35 3.82
2313 5620 6.146837 GCATATAGACATGCTTTAGAGTGTGG 59.853 42.308 0.00 0.00 46.35 4.17
2314 5621 5.939764 ATAGACATGCTTTAGAGTGTGGA 57.060 39.130 0.00 0.00 0.00 4.02
2315 5622 4.833478 AGACATGCTTTAGAGTGTGGAT 57.167 40.909 0.00 0.00 0.00 3.41
2316 5623 5.171339 AGACATGCTTTAGAGTGTGGATT 57.829 39.130 0.00 0.00 0.00 3.01
2317 5624 5.181748 AGACATGCTTTAGAGTGTGGATTC 58.818 41.667 0.00 0.00 0.00 2.52
2318 5625 4.910195 ACATGCTTTAGAGTGTGGATTCA 58.090 39.130 0.00 0.00 0.00 2.57
2319 5626 4.697352 ACATGCTTTAGAGTGTGGATTCAC 59.303 41.667 0.00 0.00 43.87 3.18
2330 5637 6.506500 AGTGTGGATTCACTCATTTTGATC 57.493 37.500 5.55 0.00 44.07 2.92
2331 5638 5.416952 AGTGTGGATTCACTCATTTTGATCC 59.583 40.000 5.55 0.00 44.07 3.36
2332 5639 5.183713 GTGTGGATTCACTCATTTTGATCCA 59.816 40.000 5.55 0.00 43.94 3.41
2333 5640 5.953548 TGTGGATTCACTCATTTTGATCCAT 59.046 36.000 5.55 0.00 43.94 3.41
2334 5641 7.067372 GTGTGGATTCACTCATTTTGATCCATA 59.933 37.037 5.55 1.45 43.94 2.74
2335 5642 7.781219 TGTGGATTCACTCATTTTGATCCATAT 59.219 33.333 5.55 0.00 43.94 1.78
2336 5643 8.080417 GTGGATTCACTCATTTTGATCCATATG 58.920 37.037 0.00 0.00 40.58 1.78
2337 5644 7.781219 TGGATTCACTCATTTTGATCCATATGT 59.219 33.333 1.24 0.00 31.37 2.29
2338 5645 9.288576 GGATTCACTCATTTTGATCCATATGTA 57.711 33.333 1.24 0.00 0.00 2.29
2340 5647 9.857656 ATTCACTCATTTTGATCCATATGTAGT 57.142 29.630 1.24 0.00 0.00 2.73
2341 5648 8.893219 TCACTCATTTTGATCCATATGTAGTC 57.107 34.615 1.24 0.00 0.00 2.59
2342 5649 7.933577 TCACTCATTTTGATCCATATGTAGTCC 59.066 37.037 1.24 0.00 0.00 3.85
2343 5650 7.716560 CACTCATTTTGATCCATATGTAGTCCA 59.283 37.037 1.24 0.00 0.00 4.02
2344 5651 8.443176 ACTCATTTTGATCCATATGTAGTCCAT 58.557 33.333 1.24 0.00 37.58 3.41
2345 5652 9.948964 CTCATTTTGATCCATATGTAGTCCATA 57.051 33.333 1.24 0.00 40.27 2.74
2346 5653 9.948964 TCATTTTGATCCATATGTAGTCCATAG 57.051 33.333 1.24 0.00 39.36 2.23
2347 5654 9.730705 CATTTTGATCCATATGTAGTCCATAGT 57.269 33.333 1.24 0.00 39.36 2.12
2348 5655 9.730705 ATTTTGATCCATATGTAGTCCATAGTG 57.269 33.333 1.24 0.00 39.36 2.74
2349 5656 8.491045 TTTGATCCATATGTAGTCCATAGTGA 57.509 34.615 1.24 0.00 39.36 3.41
2350 5657 8.491045 TTGATCCATATGTAGTCCATAGTGAA 57.509 34.615 1.24 0.00 39.36 3.18
2351 5658 8.491045 TGATCCATATGTAGTCCATAGTGAAA 57.509 34.615 1.24 0.00 39.36 2.69
2352 5659 9.104713 TGATCCATATGTAGTCCATAGTGAAAT 57.895 33.333 1.24 0.00 39.36 2.17
2353 5660 9.593134 GATCCATATGTAGTCCATAGTGAAATC 57.407 37.037 1.24 0.00 39.36 2.17
2354 5661 8.727100 TCCATATGTAGTCCATAGTGAAATCT 57.273 34.615 1.24 0.00 39.36 2.40
2355 5662 8.807118 TCCATATGTAGTCCATAGTGAAATCTC 58.193 37.037 1.24 0.00 39.36 2.75
2356 5663 8.811017 CCATATGTAGTCCATAGTGAAATCTCT 58.189 37.037 1.24 0.00 39.36 3.10
2364 5671 9.660180 AGTCCATAGTGAAATCTCTAAAAAGAC 57.340 33.333 0.00 0.00 0.00 3.01
2365 5672 9.660180 GTCCATAGTGAAATCTCTAAAAAGACT 57.340 33.333 0.00 0.00 0.00 3.24
2611 5918 6.927381 TGCACTTAACTTAGGTCTACTGAAAC 59.073 38.462 0.00 0.00 0.00 2.78
2612 5919 7.153315 GCACTTAACTTAGGTCTACTGAAACT 58.847 38.462 0.00 0.00 0.00 2.66
2613 5920 7.116519 GCACTTAACTTAGGTCTACTGAAACTG 59.883 40.741 0.00 0.00 0.00 3.16
2614 5921 8.358148 CACTTAACTTAGGTCTACTGAAACTGA 58.642 37.037 0.00 0.00 0.00 3.41
2615 5922 8.921205 ACTTAACTTAGGTCTACTGAAACTGAA 58.079 33.333 0.00 0.00 0.00 3.02
2616 5923 9.760077 CTTAACTTAGGTCTACTGAAACTGAAA 57.240 33.333 0.00 0.00 0.00 2.69
2617 5924 9.538508 TTAACTTAGGTCTACTGAAACTGAAAC 57.461 33.333 0.00 0.00 0.00 2.78
2691 5998 4.424842 CTGGGAGCCTATAAATCTCTCCT 58.575 47.826 6.55 0.00 42.16 3.69
2696 6003 5.542251 GGAGCCTATAAATCTCTCCTGTTCT 59.458 44.000 0.00 0.00 40.02 3.01
2723 6030 7.047891 TGTAATGGTTCTGGAACTGATGTATC 58.952 38.462 12.34 0.00 40.94 2.24
2891 6198 9.692749 ATTCATTTTCAGAGCTTATTATGCATG 57.307 29.630 10.16 0.00 0.00 4.06
2893 6200 8.347771 TCATTTTCAGAGCTTATTATGCATGTC 58.652 33.333 10.16 0.00 0.00 3.06
3042 6404 1.837439 TGTCTAGATTGGGATGGCGTT 59.163 47.619 0.00 0.00 0.00 4.84
3260 6622 8.820933 GGGAAAAGAAAAAGAAAATCAGAAGTG 58.179 33.333 0.00 0.00 0.00 3.16
3294 6656 3.532232 ACTACTTCCAGATACTCCCTCCA 59.468 47.826 0.00 0.00 0.00 3.86
3314 6676 5.123227 TCCAGTCCTTTTTATTCCGCATAG 58.877 41.667 0.00 0.00 0.00 2.23
3482 7181 5.696724 CACAAAGCCTATAAATAGAGGTCCG 59.303 44.000 3.27 0.00 37.04 4.79
3639 7338 4.020128 TCACCTCTAGAGCGATATCTAGCA 60.020 45.833 14.73 4.47 45.65 3.49
3809 7508 9.920946 TTAATTAGATTCCTGGTTGATTAAGCT 57.079 29.630 0.91 0.00 35.38 3.74
3829 7528 5.083821 AGCTTCTCTGTTAGGAAAGAGTCT 58.916 41.667 0.00 0.00 40.70 3.24
3902 7602 6.668645 TGGCCAAGGTTGTCTGTTATATAAT 58.331 36.000 0.61 0.00 0.00 1.28
3920 7620 3.775654 GTGGCCGACCCCTCTCAG 61.776 72.222 0.00 0.00 33.59 3.35
4022 7722 7.116805 CCATCAATTGCCTCTAAACAAAAGTTC 59.883 37.037 0.00 0.00 0.00 3.01
4088 7788 4.324267 AGTGCCACAACCTGTTTATAGAC 58.676 43.478 0.00 0.00 0.00 2.59
4150 7850 4.759693 TCCAGTGCATGTTTTAGTGTAAGG 59.240 41.667 0.00 0.00 0.00 2.69
4348 8050 8.374327 TCATTTCAGTTCATATGCAGTCTATG 57.626 34.615 0.00 0.00 0.00 2.23
4535 8237 9.489084 CCTTTCACGATCATCAGGTTAATTATA 57.511 33.333 0.00 0.00 0.00 0.98
4782 8486 3.060363 CGCTCGTAACACTTGGTCATTAC 59.940 47.826 0.00 0.00 0.00 1.89
4960 8664 4.702392 CTTCAGACGTGATGTTAACTTGC 58.298 43.478 7.22 0.00 30.85 4.01
5059 8763 2.930040 CCAACTAGCGTTACACATCAGG 59.070 50.000 0.00 0.00 0.00 3.86
5138 8842 4.843728 TCTTCCGACTGATATGGCTTTTT 58.156 39.130 0.00 0.00 0.00 1.94
5139 8843 4.876107 TCTTCCGACTGATATGGCTTTTTC 59.124 41.667 0.00 0.00 0.00 2.29
5140 8844 3.194861 TCCGACTGATATGGCTTTTTCG 58.805 45.455 0.00 0.00 0.00 3.46
5260 8965 0.244994 ACTAGTGGCACTCTGAAGCG 59.755 55.000 25.80 7.42 32.87 4.68
5276 8983 1.154150 GCGGAGTGCAGTGCATTTC 60.154 57.895 22.87 20.48 45.45 2.17
5333 9045 5.009710 GGCAGTAGCAGTCAGTACATACATA 59.990 44.000 0.00 0.00 44.61 2.29
5334 9046 6.146216 GCAGTAGCAGTCAGTACATACATAG 58.854 44.000 0.00 0.00 41.58 2.23
5335 9047 6.238786 GCAGTAGCAGTCAGTACATACATAGT 60.239 42.308 0.00 0.00 41.58 2.12
5336 9048 7.682261 GCAGTAGCAGTCAGTACATACATAGTT 60.682 40.741 0.00 0.00 41.58 2.24
5337 9049 7.645735 CAGTAGCAGTCAGTACATACATAGTTG 59.354 40.741 0.00 0.00 0.00 3.16
5373 9085 1.540267 TTGTCGCGGGATTTGGAAAT 58.460 45.000 6.13 0.00 0.00 2.17
5400 9112 3.621268 TGCAAACAATCGAGCATAGTACC 59.379 43.478 0.00 0.00 31.05 3.34
5482 9194 3.310501 CGATATTTGGTGGAAACCGGTAC 59.689 47.826 8.00 0.94 0.00 3.34
5600 9315 8.930527 TCATTTAATTCGGATAGAAGGGAGTAA 58.069 33.333 0.00 0.00 42.92 2.24
5601 9316 9.726438 CATTTAATTCGGATAGAAGGGAGTAAT 57.274 33.333 0.00 0.00 42.92 1.89
5677 9396 2.386661 AACACAGTAAGGGCATCTCG 57.613 50.000 0.00 0.00 0.00 4.04
5747 9466 1.120530 GGATAGAGGCGGTTTGAGGA 58.879 55.000 0.00 0.00 0.00 3.71
5748 9467 1.485066 GGATAGAGGCGGTTTGAGGAA 59.515 52.381 0.00 0.00 0.00 3.36
5811 9539 2.349755 GGGTGGGCTTTGCGTCTA 59.650 61.111 0.00 0.00 0.00 2.59
5873 9601 0.912486 AACTCTATTCCTTGCCCGCT 59.088 50.000 0.00 0.00 0.00 5.52
5937 9665 3.241530 TGGACCGCTGTCTTGCCT 61.242 61.111 8.25 0.00 41.47 4.75
5938 9666 1.888436 CTGGACCGCTGTCTTGCCTA 61.888 60.000 8.25 0.00 41.47 3.93
5939 9667 1.264749 TGGACCGCTGTCTTGCCTAT 61.265 55.000 8.25 0.00 41.47 2.57
5952 9713 1.917872 TGCCTATGTTTGACAACCCC 58.082 50.000 0.00 0.00 31.02 4.95
5965 9726 3.507377 AACCCCGGCTCACCCAAAG 62.507 63.158 0.00 0.00 0.00 2.77
5973 9734 1.488393 GGCTCACCCAAAGCTCTATCT 59.512 52.381 0.00 0.00 39.75 1.98
6000 9761 2.291800 CCACATCCTTTCCCACCTGAAT 60.292 50.000 0.00 0.00 0.00 2.57
6019 9780 5.499313 TGAATCAACTCAGCATTCATACCA 58.501 37.500 0.00 0.00 32.72 3.25
6025 9850 3.881688 ACTCAGCATTCATACCAGCATTC 59.118 43.478 0.00 0.00 0.00 2.67
6037 9862 2.042831 AGCATTCAAGTGGCTCGCC 61.043 57.895 0.00 0.00 30.74 5.54
6041 9866 2.172483 ATTCAAGTGGCTCGCCGACT 62.172 55.000 3.14 5.47 39.42 4.18
6085 9910 0.102481 CGGGGTTACGATCCTGACAG 59.898 60.000 0.00 0.00 35.47 3.51
6110 9935 5.954150 TGAGTATTAGGGGTACGAAAGAGTT 59.046 40.000 0.00 0.00 0.00 3.01
6125 9950 5.584442 GAAAGAGTTGTAGAGCCTAGCTAC 58.416 45.833 0.00 0.00 39.88 3.58
6139 9964 2.762535 AGCTACGGCACAAGTGTAAT 57.237 45.000 1.79 0.00 41.70 1.89
6145 9970 2.229543 ACGGCACAAGTGTAATACTCGA 59.770 45.455 1.79 0.00 39.18 4.04
6160 9985 8.525316 TGTAATACTCGATGTTTAGGAGTTCAA 58.475 33.333 0.00 0.00 41.09 2.69
6165 9990 3.619979 CGATGTTTAGGAGTTCAAGCCCT 60.620 47.826 0.00 0.00 0.00 5.19
6167 9992 4.178956 TGTTTAGGAGTTCAAGCCCTTT 57.821 40.909 0.00 0.00 0.00 3.11
6180 10005 0.616891 GCCCTTTTCCGAGGAGGTAA 59.383 55.000 0.00 0.00 39.25 2.85
6181 10006 1.212195 GCCCTTTTCCGAGGAGGTAAT 59.788 52.381 0.00 0.00 39.25 1.89
6182 10007 2.436911 GCCCTTTTCCGAGGAGGTAATA 59.563 50.000 0.00 0.00 39.25 0.98
6183 10008 3.494573 GCCCTTTTCCGAGGAGGTAATAG 60.495 52.174 0.00 0.00 39.25 1.73
6184 10009 3.494573 CCCTTTTCCGAGGAGGTAATAGC 60.495 52.174 0.00 0.00 39.25 2.97
6185 10010 3.494573 CCTTTTCCGAGGAGGTAATAGCC 60.495 52.174 0.00 0.00 39.25 3.93
6186 10011 2.769602 TTCCGAGGAGGTAATAGCCT 57.230 50.000 0.00 0.00 42.53 4.58
6187 10012 2.769602 TCCGAGGAGGTAATAGCCTT 57.230 50.000 0.00 0.00 39.34 4.35
6188 10013 3.889859 TCCGAGGAGGTAATAGCCTTA 57.110 47.619 0.00 0.00 39.34 2.69
6189 10014 3.494332 TCCGAGGAGGTAATAGCCTTAC 58.506 50.000 0.00 0.00 39.34 2.34
6190 10015 2.228343 CCGAGGAGGTAATAGCCTTACG 59.772 54.545 0.00 0.00 39.34 3.18
6191 10016 2.228343 CGAGGAGGTAATAGCCTTACGG 59.772 54.545 0.00 0.00 39.34 4.02
6192 10017 2.561858 GAGGAGGTAATAGCCTTACGGG 59.438 54.545 0.00 0.00 39.34 5.28
6193 10018 1.622312 GGAGGTAATAGCCTTACGGGG 59.378 57.143 0.00 0.00 39.34 5.73
6217 10042 1.066143 CAACCCTACATCTCGTGCCTT 60.066 52.381 0.00 0.00 0.00 4.35
6230 10055 1.597663 CGTGCCTTGAGACTCGTTTTT 59.402 47.619 0.00 0.00 0.00 1.94
6334 10349 2.047274 ACGTCGCCAGGGTGATTG 60.047 61.111 4.68 3.96 36.98 2.67
6362 10377 2.450609 AACTACGGCAGTTACAGGTG 57.549 50.000 0.00 0.00 45.93 4.00
6363 10378 1.335145 ACTACGGCAGTTACAGGTGT 58.665 50.000 0.00 0.00 31.59 4.16
6364 10379 2.517959 ACTACGGCAGTTACAGGTGTA 58.482 47.619 0.00 0.00 31.59 2.90
6366 10381 1.624336 ACGGCAGTTACAGGTGTAGA 58.376 50.000 0.00 0.00 0.00 2.59
6367 10382 2.176889 ACGGCAGTTACAGGTGTAGAT 58.823 47.619 0.00 0.00 0.00 1.98
6368 10383 3.359033 ACGGCAGTTACAGGTGTAGATA 58.641 45.455 0.00 0.00 0.00 1.98
6369 10384 3.380637 ACGGCAGTTACAGGTGTAGATAG 59.619 47.826 0.00 0.00 0.00 2.08
6370 10385 3.380637 CGGCAGTTACAGGTGTAGATAGT 59.619 47.826 0.00 0.00 0.00 2.12
6371 10386 4.497674 CGGCAGTTACAGGTGTAGATAGTC 60.498 50.000 0.00 0.00 0.00 2.59
6372 10387 4.401519 GGCAGTTACAGGTGTAGATAGTCA 59.598 45.833 0.00 0.00 0.00 3.41
6373 10388 5.341617 GCAGTTACAGGTGTAGATAGTCAC 58.658 45.833 0.00 0.00 0.00 3.67
6374 10389 5.105877 GCAGTTACAGGTGTAGATAGTCACA 60.106 44.000 0.00 0.00 36.43 3.58
6375 10390 6.571731 GCAGTTACAGGTGTAGATAGTCACAA 60.572 42.308 0.00 0.00 36.43 3.33
6376 10391 6.807230 CAGTTACAGGTGTAGATAGTCACAAC 59.193 42.308 0.00 0.00 36.43 3.32
6377 10392 6.720288 AGTTACAGGTGTAGATAGTCACAACT 59.280 38.462 0.00 0.00 43.43 3.16
6378 10393 7.886970 AGTTACAGGTGTAGATAGTCACAACTA 59.113 37.037 0.00 0.00 40.71 2.24
6379 10394 6.512342 ACAGGTGTAGATAGTCACAACTAC 57.488 41.667 0.00 0.00 40.71 2.73
6380 10395 5.123502 ACAGGTGTAGATAGTCACAACTACG 59.876 44.000 0.00 0.00 40.71 3.51
6381 10396 4.639310 AGGTGTAGATAGTCACAACTACGG 59.361 45.833 0.00 0.00 40.87 4.02
6382 10397 4.201990 GGTGTAGATAGTCACAACTACGGG 60.202 50.000 0.00 0.00 40.74 5.28
6383 10398 4.637534 GTGTAGATAGTCACAACTACGGGA 59.362 45.833 0.00 0.00 40.74 5.14
6384 10399 4.880120 TGTAGATAGTCACAACTACGGGAG 59.120 45.833 0.00 0.00 40.74 4.30
6385 10400 7.571093 GTGTAGATAGTCACAACTACGGGAGT 61.571 46.154 0.00 0.00 40.74 3.85
6450 10465 0.968901 ACCATTGCAGCTCCCATGTG 60.969 55.000 0.00 0.00 0.00 3.21
6501 10543 0.729478 CGAGTGTTGTCGATGCGTCT 60.729 55.000 4.05 0.00 42.85 4.18
6521 10563 3.321111 TCTGAGTGGACTTCCTGTTGTAC 59.679 47.826 0.00 0.00 36.82 2.90
6522 10564 3.035363 TGAGTGGACTTCCTGTTGTACA 58.965 45.455 0.00 0.00 36.82 2.90
6531 10573 3.034721 TCCTGTTGTACACATCCGAAC 57.965 47.619 0.00 0.00 33.76 3.95
6549 10591 2.073252 ACGCTCATATGGTCCAGAGA 57.927 50.000 10.15 1.47 0.00 3.10
6550 10592 1.683917 ACGCTCATATGGTCCAGAGAC 59.316 52.381 10.15 2.27 42.73 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.617274 GCTGGTGAACAAGGCGACC 61.617 63.158 0.00 0.00 0.00 4.79
26 27 2.497675 GGAGTCATCTAGTTGCTGGTGA 59.502 50.000 0.00 0.00 0.00 4.02
28 29 2.540383 TGGAGTCATCTAGTTGCTGGT 58.460 47.619 0.00 0.00 0.00 4.00
129 130 1.659794 CTGGTTCCAGCAAAACCCG 59.340 57.895 5.89 3.10 44.62 5.28
607 2225 3.982576 AACACCGGTTCTAGCAAAAAG 57.017 42.857 2.97 0.00 29.00 2.27
849 2774 0.548031 GAATCTCCTGCACATCCCCA 59.452 55.000 0.00 0.00 0.00 4.96
850 2775 0.842635 AGAATCTCCTGCACATCCCC 59.157 55.000 0.00 0.00 0.00 4.81
907 2840 1.279271 CCGTCAGATCTGGTCCCTTTT 59.721 52.381 22.42 0.00 0.00 2.27
1006 2952 0.538516 CAACCACAACCCAATCCGGA 60.539 55.000 6.61 6.61 36.56 5.14
1007 2953 0.538516 TCAACCACAACCCAATCCGG 60.539 55.000 0.00 0.00 0.00 5.14
1008 2954 0.881118 CTCAACCACAACCCAATCCG 59.119 55.000 0.00 0.00 0.00 4.18
1009 2955 0.603065 GCTCAACCACAACCCAATCC 59.397 55.000 0.00 0.00 0.00 3.01
1010 2956 0.603065 GGCTCAACCACAACCCAATC 59.397 55.000 0.00 0.00 38.86 2.67
1011 2957 1.178534 CGGCTCAACCACAACCCAAT 61.179 55.000 0.00 0.00 39.03 3.16
1012 2958 1.826054 CGGCTCAACCACAACCCAA 60.826 57.895 0.00 0.00 39.03 4.12
1013 2959 2.203280 CGGCTCAACCACAACCCA 60.203 61.111 0.00 0.00 39.03 4.51
1014 2960 3.670377 GCGGCTCAACCACAACCC 61.670 66.667 0.00 0.00 39.03 4.11
1082 3028 2.277404 GAGAGCGAGAGGGGGAGT 59.723 66.667 0.00 0.00 0.00 3.85
1083 3029 2.904866 CGAGAGCGAGAGGGGGAG 60.905 72.222 0.00 0.00 40.82 4.30
1142 3090 2.289820 CGCCATTGTTGGAGATGAGATG 59.710 50.000 0.00 0.00 46.92 2.90
1143 3091 2.171237 TCGCCATTGTTGGAGATGAGAT 59.829 45.455 0.00 0.00 45.62 2.75
1144 3092 1.554617 TCGCCATTGTTGGAGATGAGA 59.445 47.619 0.00 0.00 45.62 3.27
1145 3093 2.028420 TCGCCATTGTTGGAGATGAG 57.972 50.000 0.00 0.00 45.62 2.90
1384 3332 3.670629 AGGACCAGCCTCGAGGAGG 62.671 68.421 35.69 32.83 46.97 4.30
1438 3386 1.226945 GAGCAGCGAAGAGGAGCTC 60.227 63.158 4.71 4.71 42.52 4.09
1505 3453 3.223435 ACGAACTCATCCGTGGATAGAT 58.777 45.455 0.05 0.00 37.64 1.98
1506 3454 2.651455 ACGAACTCATCCGTGGATAGA 58.349 47.619 0.05 1.59 37.64 1.98
1507 3455 3.609644 GCTACGAACTCATCCGTGGATAG 60.610 52.174 0.05 3.02 39.16 2.08
1508 3456 2.292569 GCTACGAACTCATCCGTGGATA 59.707 50.000 0.05 0.00 39.16 2.59
1572 3520 9.733556 TTATACAATACAGAAAAAGAGAGGCAA 57.266 29.630 0.00 0.00 0.00 4.52
1648 3606 1.372872 GCCACGCCATTTTGTGTCC 60.373 57.895 0.00 0.00 34.28 4.02
1718 4867 1.741770 CGGCTGCAGGTTACAGGTC 60.742 63.158 17.12 0.00 35.62 3.85
1729 4878 0.955428 AGAAAGAAATCGCGGCTGCA 60.955 50.000 19.50 5.14 42.97 4.41
1732 4881 2.003301 GAAGAGAAAGAAATCGCGGCT 58.997 47.619 6.13 0.00 0.00 5.52
1735 4884 2.622436 AGGGAAGAGAAAGAAATCGCG 58.378 47.619 0.00 0.00 0.00 5.87
1736 4885 4.504858 TGTAGGGAAGAGAAAGAAATCGC 58.495 43.478 0.00 0.00 0.00 4.58
1737 4886 7.617041 AATTGTAGGGAAGAGAAAGAAATCG 57.383 36.000 0.00 0.00 0.00 3.34
1820 4969 5.500234 TGCAAAGCAGAAAGGAGTATGTAT 58.500 37.500 0.00 0.00 33.32 2.29
1821 4970 4.905429 TGCAAAGCAGAAAGGAGTATGTA 58.095 39.130 0.00 0.00 33.32 2.29
1822 4971 3.754965 TGCAAAGCAGAAAGGAGTATGT 58.245 40.909 0.00 0.00 33.32 2.29
1823 4972 4.639310 AGATGCAAAGCAGAAAGGAGTATG 59.361 41.667 0.00 0.00 43.65 2.39
1864 5013 9.368416 ACTGTAACTGCAGGATAATAATCTCTA 57.632 33.333 19.93 0.00 40.59 2.43
1865 5014 8.256356 ACTGTAACTGCAGGATAATAATCTCT 57.744 34.615 19.93 0.00 40.59 3.10
1866 5015 8.894768 AACTGTAACTGCAGGATAATAATCTC 57.105 34.615 19.93 0.00 40.59 2.75
1867 5016 9.686683 AAAACTGTAACTGCAGGATAATAATCT 57.313 29.630 19.93 0.00 40.59 2.40
1868 5017 9.937175 GAAAACTGTAACTGCAGGATAATAATC 57.063 33.333 19.93 3.00 40.59 1.75
1952 5259 0.820891 ACCAGCAACTGACCTGCAAG 60.821 55.000 0.00 0.00 42.48 4.01
1953 5260 0.472044 TACCAGCAACTGACCTGCAA 59.528 50.000 0.00 0.00 42.48 4.08
1954 5261 0.035317 CTACCAGCAACTGACCTGCA 59.965 55.000 0.00 0.00 42.48 4.41
1955 5262 1.301677 GCTACCAGCAACTGACCTGC 61.302 60.000 0.00 0.00 41.89 4.85
1956 5263 2.846371 GCTACCAGCAACTGACCTG 58.154 57.895 0.00 0.00 41.89 4.00
2012 5319 3.511540 GCTGCCTTTTCAGGGTTTCTTAT 59.488 43.478 0.00 0.00 41.21 1.73
2058 5365 6.569179 TTAAGATTACCTGCAAAACACTCC 57.431 37.500 0.00 0.00 0.00 3.85
2078 5385 7.201644 GCTGAAGCTAGCTGTTGATGTAATTAA 60.202 37.037 20.16 0.00 40.52 1.40
2079 5386 6.258727 GCTGAAGCTAGCTGTTGATGTAATTA 59.741 38.462 20.16 0.00 40.52 1.40
2080 5387 5.065731 GCTGAAGCTAGCTGTTGATGTAATT 59.934 40.000 20.16 0.00 40.52 1.40
2081 5388 4.574013 GCTGAAGCTAGCTGTTGATGTAAT 59.426 41.667 20.16 0.00 40.52 1.89
2096 5403 5.503927 TGGAGAAAATAGAATGCTGAAGCT 58.496 37.500 3.61 0.00 42.66 3.74
2097 5404 5.824904 TGGAGAAAATAGAATGCTGAAGC 57.175 39.130 0.00 0.00 42.50 3.86
2098 5405 7.754027 CAGTTTGGAGAAAATAGAATGCTGAAG 59.246 37.037 0.00 0.00 0.00 3.02
2099 5406 7.231317 ACAGTTTGGAGAAAATAGAATGCTGAA 59.769 33.333 0.00 0.00 0.00 3.02
2192 5499 6.752168 ACCTCAAACATTTCTGGATTCAAAG 58.248 36.000 0.00 0.00 0.00 2.77
2227 5534 4.957684 ATATTTAGGAACGGAGGGAGTG 57.042 45.455 0.00 0.00 0.00 3.51
2228 5535 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2229 5536 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2230 5537 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2231 5538 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2232 5539 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2249 5556 9.847224 TTTGTAGTGGAATCTCTAAAAAGACTT 57.153 29.630 0.00 0.00 28.58 3.01
2250 5557 9.274206 GTTTGTAGTGGAATCTCTAAAAAGACT 57.726 33.333 3.22 0.00 30.99 3.24
2251 5558 9.274206 AGTTTGTAGTGGAATCTCTAAAAAGAC 57.726 33.333 3.22 0.00 30.99 3.01
2254 5561 9.199982 CGTAGTTTGTAGTGGAATCTCTAAAAA 57.800 33.333 0.00 0.00 0.00 1.94
2255 5562 8.362639 ACGTAGTTTGTAGTGGAATCTCTAAAA 58.637 33.333 0.00 0.00 37.78 1.52
2256 5563 7.889469 ACGTAGTTTGTAGTGGAATCTCTAAA 58.111 34.615 0.00 0.00 37.78 1.85
2257 5564 7.458409 ACGTAGTTTGTAGTGGAATCTCTAA 57.542 36.000 0.00 0.00 37.78 2.10
2258 5565 7.201556 CGTACGTAGTTTGTAGTGGAATCTCTA 60.202 40.741 7.22 0.00 37.78 2.43
2259 5566 5.979288 ACGTAGTTTGTAGTGGAATCTCT 57.021 39.130 0.00 0.00 37.78 3.10
2260 5567 5.736358 CGTACGTAGTTTGTAGTGGAATCTC 59.264 44.000 7.22 0.00 37.78 2.75
2261 5568 5.392380 CCGTACGTAGTTTGTAGTGGAATCT 60.392 44.000 15.21 0.00 37.78 2.40
2262 5569 4.795278 CCGTACGTAGTTTGTAGTGGAATC 59.205 45.833 15.21 0.00 37.78 2.52
2263 5570 4.458989 TCCGTACGTAGTTTGTAGTGGAAT 59.541 41.667 15.21 0.00 37.78 3.01
2264 5571 3.818210 TCCGTACGTAGTTTGTAGTGGAA 59.182 43.478 15.21 0.00 37.78 3.53
2265 5572 3.407698 TCCGTACGTAGTTTGTAGTGGA 58.592 45.455 15.21 0.00 37.78 4.02
2266 5573 3.829886 TCCGTACGTAGTTTGTAGTGG 57.170 47.619 15.21 0.00 37.78 4.00
2267 5574 3.545078 GCATCCGTACGTAGTTTGTAGTG 59.455 47.826 15.21 0.00 37.78 2.74
2268 5575 3.191162 TGCATCCGTACGTAGTTTGTAGT 59.809 43.478 15.21 0.00 37.78 2.73
2269 5576 3.761657 TGCATCCGTACGTAGTTTGTAG 58.238 45.455 15.21 0.00 37.78 2.74
2270 5577 3.846423 TGCATCCGTACGTAGTTTGTA 57.154 42.857 15.21 1.12 37.78 2.41
2271 5578 2.728690 TGCATCCGTACGTAGTTTGT 57.271 45.000 15.21 0.00 37.78 2.83
2272 5579 6.304922 GTCTATATGCATCCGTACGTAGTTTG 59.695 42.308 15.21 5.29 37.78 2.93
2273 5580 6.016860 TGTCTATATGCATCCGTACGTAGTTT 60.017 38.462 15.21 0.00 37.78 2.66
2274 5581 5.471116 TGTCTATATGCATCCGTACGTAGTT 59.529 40.000 15.21 0.00 37.78 2.24
2276 5583 5.541098 TGTCTATATGCATCCGTACGTAG 57.459 43.478 15.21 6.72 0.00 3.51
2277 5584 5.875930 CATGTCTATATGCATCCGTACGTA 58.124 41.667 15.21 0.00 0.00 3.57
2278 5585 4.733850 CATGTCTATATGCATCCGTACGT 58.266 43.478 15.21 0.00 0.00 3.57
2289 5596 7.436933 TCCACACTCTAAAGCATGTCTATATG 58.563 38.462 0.00 0.00 0.00 1.78
2290 5597 7.603180 TCCACACTCTAAAGCATGTCTATAT 57.397 36.000 0.00 0.00 0.00 0.86
2291 5598 7.603180 ATCCACACTCTAAAGCATGTCTATA 57.397 36.000 0.00 0.00 0.00 1.31
2292 5599 5.939764 TCCACACTCTAAAGCATGTCTAT 57.060 39.130 0.00 0.00 0.00 1.98
2293 5600 5.939764 ATCCACACTCTAAAGCATGTCTA 57.060 39.130 0.00 0.00 0.00 2.59
2294 5601 4.833478 ATCCACACTCTAAAGCATGTCT 57.167 40.909 0.00 0.00 0.00 3.41
2295 5602 4.937620 TGAATCCACACTCTAAAGCATGTC 59.062 41.667 0.00 0.00 0.00 3.06
2296 5603 4.697352 GTGAATCCACACTCTAAAGCATGT 59.303 41.667 0.00 0.00 42.72 3.21
2297 5604 4.940046 AGTGAATCCACACTCTAAAGCATG 59.060 41.667 0.00 0.00 46.36 4.06
2298 5605 5.171339 AGTGAATCCACACTCTAAAGCAT 57.829 39.130 0.00 0.00 46.36 3.79
2299 5606 4.623932 AGTGAATCCACACTCTAAAGCA 57.376 40.909 0.00 0.00 46.36 3.91
2308 5615 5.183713 TGGATCAAAATGAGTGAATCCACAC 59.816 40.000 0.00 0.00 45.54 3.82
2309 5616 5.323581 TGGATCAAAATGAGTGAATCCACA 58.676 37.500 0.00 0.00 45.54 4.17
2310 5617 5.902613 TGGATCAAAATGAGTGAATCCAC 57.097 39.130 0.00 0.00 43.50 4.02
2311 5618 7.781219 ACATATGGATCAAAATGAGTGAATCCA 59.219 33.333 7.80 4.50 37.23 3.41
2312 5619 8.174733 ACATATGGATCAAAATGAGTGAATCC 57.825 34.615 7.80 0.00 0.00 3.01
2314 5621 9.857656 ACTACATATGGATCAAAATGAGTGAAT 57.142 29.630 7.80 0.00 0.00 2.57
2315 5622 9.330063 GACTACATATGGATCAAAATGAGTGAA 57.670 33.333 7.80 0.00 0.00 3.18
2316 5623 7.933577 GGACTACATATGGATCAAAATGAGTGA 59.066 37.037 7.80 0.00 0.00 3.41
2317 5624 7.716560 TGGACTACATATGGATCAAAATGAGTG 59.283 37.037 7.80 0.00 0.00 3.51
2318 5625 7.805163 TGGACTACATATGGATCAAAATGAGT 58.195 34.615 7.80 1.27 0.00 3.41
2319 5626 8.859236 ATGGACTACATATGGATCAAAATGAG 57.141 34.615 7.80 0.00 38.26 2.90
2320 5627 9.948964 CTATGGACTACATATGGATCAAAATGA 57.051 33.333 7.80 0.00 41.07 2.57
2321 5628 9.730705 ACTATGGACTACATATGGATCAAAATG 57.269 33.333 7.80 0.00 41.07 2.32
2322 5629 9.730705 CACTATGGACTACATATGGATCAAAAT 57.269 33.333 7.80 0.00 41.07 1.82
2323 5630 8.933653 TCACTATGGACTACATATGGATCAAAA 58.066 33.333 7.80 0.00 41.07 2.44
2324 5631 8.491045 TCACTATGGACTACATATGGATCAAA 57.509 34.615 7.80 0.00 41.07 2.69
2325 5632 8.491045 TTCACTATGGACTACATATGGATCAA 57.509 34.615 7.80 0.00 41.07 2.57
2326 5633 8.491045 TTTCACTATGGACTACATATGGATCA 57.509 34.615 7.80 0.00 41.07 2.92
2327 5634 9.593134 GATTTCACTATGGACTACATATGGATC 57.407 37.037 7.80 1.31 41.07 3.36
2328 5635 9.331466 AGATTTCACTATGGACTACATATGGAT 57.669 33.333 7.80 0.00 41.07 3.41
2329 5636 8.727100 AGATTTCACTATGGACTACATATGGA 57.273 34.615 7.80 0.00 41.07 3.41
2330 5637 8.811017 AGAGATTTCACTATGGACTACATATGG 58.189 37.037 7.80 0.00 41.07 2.74
2338 5645 9.660180 GTCTTTTTAGAGATTTCACTATGGACT 57.340 33.333 0.00 0.00 0.00 3.85
2339 5646 9.660180 AGTCTTTTTAGAGATTTCACTATGGAC 57.340 33.333 0.00 0.00 0.00 4.02
2613 5920 9.498307 CCATACGGTAAACAAATAATCAGTTTC 57.502 33.333 0.00 0.00 36.85 2.78
2614 5921 7.971722 GCCATACGGTAAACAAATAATCAGTTT 59.028 33.333 0.00 0.00 38.79 2.66
2615 5922 7.121463 TGCCATACGGTAAACAAATAATCAGTT 59.879 33.333 0.00 0.00 33.28 3.16
2616 5923 6.600032 TGCCATACGGTAAACAAATAATCAGT 59.400 34.615 0.00 0.00 33.28 3.41
2617 5924 7.022055 TGCCATACGGTAAACAAATAATCAG 57.978 36.000 0.00 0.00 33.28 2.90
2691 5998 5.071788 AGTTCCAGAACCATTACAGAGAACA 59.928 40.000 6.91 0.00 42.06 3.18
2696 6003 5.013079 ACATCAGTTCCAGAACCATTACAGA 59.987 40.000 6.91 0.00 42.06 3.41
2723 6030 1.452110 TCCATTGCATGACAACGGAG 58.548 50.000 11.82 2.04 45.43 4.63
2769 6076 1.069906 CCACAGCGGAAGACTTTTTCG 60.070 52.381 0.00 0.00 36.56 3.46
2893 6200 8.545420 GCCATAAGCATGTTCATGATTAAAAAG 58.455 33.333 21.47 13.74 42.97 2.27
3042 6404 3.856638 GCATGGCACTCACAAAATTTCGA 60.857 43.478 0.00 0.00 0.00 3.71
3209 6571 7.244886 TCTCTCTATTGTTCCTCATCACAAA 57.755 36.000 0.00 0.00 36.50 2.83
3260 6622 5.313712 TCTGGAAGTAGTCAAATGGGTTTC 58.686 41.667 0.00 0.00 33.76 2.78
3294 6656 7.120923 TCTACTATGCGGAATAAAAAGGACT 57.879 36.000 0.00 0.00 0.00 3.85
3314 6676 7.044052 GCAAAGTTTGACTTGACACAAATCTAC 60.044 37.037 19.82 0.00 38.66 2.59
3482 7181 3.335579 CCAGGTTACAAACTAGAGGTGC 58.664 50.000 0.00 0.00 0.00 5.01
3639 7338 4.602340 AGGAACTACTTCAACGTGATGT 57.398 40.909 0.00 0.33 36.02 3.06
3716 7415 1.401552 GACAAGTTGAAGCAGCACACA 59.598 47.619 10.54 0.00 0.00 3.72
3809 7508 7.232188 TGAGTAGACTCTTTCCTAACAGAGAA 58.768 38.462 10.87 0.00 43.25 2.87
3829 7528 9.256228 ACTCCAATACAATCTCTAAACTGAGTA 57.744 33.333 0.00 0.00 35.68 2.59
3902 7602 4.631740 TGAGAGGGGTCGGCCACA 62.632 66.667 12.87 0.00 41.86 4.17
3920 7620 8.705048 AACGACAATAATCTTCTCTCCTTTAC 57.295 34.615 0.00 0.00 0.00 2.01
4127 7827 4.759693 CCTTACACTAAAACATGCACTGGA 59.240 41.667 0.00 0.00 0.00 3.86
4134 7834 5.058149 TGCATGCCTTACACTAAAACATG 57.942 39.130 16.68 0.00 35.65 3.21
4287 7989 5.447279 CGCCAAAACTTGTCTACATACATCC 60.447 44.000 0.00 0.00 0.00 3.51
4589 8293 6.992123 CCTGCAACCAACTAGTATCATATCAA 59.008 38.462 0.00 0.00 0.00 2.57
4782 8486 9.331282 AGATAAGACAATCCTTTCGAAATAAGG 57.669 33.333 11.70 9.57 42.89 2.69
4918 8622 2.238144 AGCATGCATGAGTACCTTCACT 59.762 45.455 30.64 10.38 0.00 3.41
4960 8664 2.468831 TGCAAGCAAAGGTTTAAAGCG 58.531 42.857 11.50 0.00 0.00 4.68
5059 8763 1.398390 ACGATTCATTTCGAGCAAGGC 59.602 47.619 0.31 0.00 41.62 4.35
5148 8853 6.640907 CACATCATTTGCCATATCAGTCATTG 59.359 38.462 0.00 0.00 0.00 2.82
5260 8965 3.308438 AATTGAAATGCACTGCACTCC 57.692 42.857 5.67 0.00 43.04 3.85
5276 8983 9.173021 TGGAATTCCACTACAGTGTATAAATTG 57.827 33.333 23.63 0.00 44.21 2.32
5333 9045 1.486310 TGACAACTCTGCACCTCAACT 59.514 47.619 0.00 0.00 0.00 3.16
5334 9046 1.953559 TGACAACTCTGCACCTCAAC 58.046 50.000 0.00 0.00 0.00 3.18
5335 9047 2.880268 CAATGACAACTCTGCACCTCAA 59.120 45.455 0.00 0.00 0.00 3.02
5336 9048 2.158769 ACAATGACAACTCTGCACCTCA 60.159 45.455 0.00 0.00 0.00 3.86
5337 9049 2.481952 GACAATGACAACTCTGCACCTC 59.518 50.000 0.00 0.00 0.00 3.85
5373 9085 1.946081 TGCTCGATTGTTTGCAAGTCA 59.054 42.857 0.00 0.47 38.10 3.41
5400 9112 3.119602 GCATAGCATGGATAAGGCACATG 60.120 47.826 0.00 0.00 43.58 3.21
5482 9194 4.203563 GTCGCTAAACAAAAAGGACAAACG 59.796 41.667 0.00 0.00 0.00 3.60
5677 9396 2.170273 GTTTGAGCGTCCGCGTTC 59.830 61.111 4.92 0.00 46.27 3.95
5811 9539 2.268022 ACGGAAGTGACAGCGATCT 58.732 52.632 0.00 0.00 46.97 2.75
5873 9601 0.243907 CGCTTCAGACGAGAAAGGGA 59.756 55.000 0.00 0.00 0.00 4.20
5920 9648 1.264749 ATAGGCAAGACAGCGGTCCA 61.265 55.000 13.67 0.00 45.48 4.02
5924 9652 1.131126 CAAACATAGGCAAGACAGCGG 59.869 52.381 0.00 0.00 34.64 5.52
5925 9653 2.076100 TCAAACATAGGCAAGACAGCG 58.924 47.619 0.00 0.00 34.64 5.18
5937 9665 0.402504 AGCCGGGGTTGTCAAACATA 59.597 50.000 2.18 0.00 38.10 2.29
5938 9666 0.893727 GAGCCGGGGTTGTCAAACAT 60.894 55.000 2.18 0.00 38.10 2.71
5939 9667 1.527380 GAGCCGGGGTTGTCAAACA 60.527 57.895 2.18 0.00 38.10 2.83
5952 9713 0.179000 ATAGAGCTTTGGGTGAGCCG 59.821 55.000 0.00 0.00 41.03 5.52
5965 9726 2.549778 GGATGTGGGCAAGAGATAGAGC 60.550 54.545 0.00 0.00 0.00 4.09
5973 9734 0.039618 GGGAAAGGATGTGGGCAAGA 59.960 55.000 0.00 0.00 0.00 3.02
6000 9761 3.273434 GCTGGTATGAATGCTGAGTTGA 58.727 45.455 0.00 0.00 0.00 3.18
6019 9780 2.042831 GGCGAGCCACTTGAATGCT 61.043 57.895 9.58 0.00 38.24 3.79
6025 9850 3.114616 CAGTCGGCGAGCCACTTG 61.115 66.667 11.20 4.80 35.37 3.16
6056 9881 1.005867 GTAACCCCGACAGACGCAA 60.006 57.895 0.00 0.00 41.07 4.85
6085 9910 5.359292 ACTCTTTCGTACCCCTAATACTCAC 59.641 44.000 0.00 0.00 0.00 3.51
6125 9950 2.871133 TCGAGTATTACACTTGTGCCG 58.129 47.619 0.10 0.00 39.42 5.69
6139 9964 5.408356 GCTTGAACTCCTAAACATCGAGTA 58.592 41.667 0.00 0.00 35.84 2.59
6145 9970 4.388577 AAGGGCTTGAACTCCTAAACAT 57.611 40.909 0.00 0.00 0.00 2.71
6160 9985 0.252558 TACCTCCTCGGAAAAGGGCT 60.253 55.000 9.44 0.00 37.02 5.19
6165 9990 3.381335 AGGCTATTACCTCCTCGGAAAA 58.619 45.455 0.00 0.00 33.62 2.29
6167 9992 2.769602 AGGCTATTACCTCCTCGGAA 57.230 50.000 0.00 0.00 33.62 4.30
6192 10017 3.518590 CACGAGATGTAGGGTTGTTACC 58.481 50.000 0.00 0.00 44.22 2.85
6193 10018 2.928116 GCACGAGATGTAGGGTTGTTAC 59.072 50.000 0.00 0.00 0.00 2.50
6194 10019 2.093869 GGCACGAGATGTAGGGTTGTTA 60.094 50.000 0.00 0.00 0.00 2.41
6195 10020 1.338769 GGCACGAGATGTAGGGTTGTT 60.339 52.381 0.00 0.00 0.00 2.83
6362 10377 4.880696 ACTCCCGTAGTTGTGACTATCTAC 59.119 45.833 0.00 0.00 40.33 2.59
6363 10378 5.108187 ACTCCCGTAGTTGTGACTATCTA 57.892 43.478 0.00 0.00 40.33 1.98
6364 10379 3.965694 ACTCCCGTAGTTGTGACTATCT 58.034 45.455 0.00 0.00 40.33 1.98
6374 10389 8.709499 GCCATAGCTACTATAACTCCCGTAGTT 61.709 44.444 0.00 5.80 43.01 2.24
6375 10390 6.179040 CCATAGCTACTATAACTCCCGTAGT 58.821 44.000 0.00 0.00 41.49 2.73
6376 10391 5.066246 GCCATAGCTACTATAACTCCCGTAG 59.934 48.000 0.00 0.00 35.50 3.51
6377 10392 4.946157 GCCATAGCTACTATAACTCCCGTA 59.054 45.833 0.00 0.00 35.50 4.02
6378 10393 3.762823 GCCATAGCTACTATAACTCCCGT 59.237 47.826 0.00 0.00 35.50 5.28
6379 10394 4.373348 GCCATAGCTACTATAACTCCCG 57.627 50.000 0.00 0.00 35.50 5.14
6429 10444 0.681887 CATGGGAGCTGCAATGGTCA 60.682 55.000 14.62 0.00 36.30 4.02
6501 10543 3.035363 TGTACAACAGGAAGTCCACTCA 58.965 45.455 0.00 0.00 38.89 3.41
6521 10563 1.794701 CCATATGAGCGTTCGGATGTG 59.205 52.381 3.65 2.22 0.00 3.21
6522 10564 1.412710 ACCATATGAGCGTTCGGATGT 59.587 47.619 3.65 0.00 0.00 3.06
6531 10573 2.430546 GTCTCTGGACCATATGAGCG 57.569 55.000 3.65 0.00 36.53 5.03
6556 10598 7.147983 GGCTAATGATGAGGTCACCTACTATAG 60.148 44.444 0.00 0.00 40.28 1.31
6557 10599 6.663953 GGCTAATGATGAGGTCACCTACTATA 59.336 42.308 0.00 0.00 40.28 1.31
6558 10600 5.482175 GGCTAATGATGAGGTCACCTACTAT 59.518 44.000 0.00 0.00 40.28 2.12
6559 10601 4.833380 GGCTAATGATGAGGTCACCTACTA 59.167 45.833 0.00 0.00 40.28 1.82
6560 10602 3.643792 GGCTAATGATGAGGTCACCTACT 59.356 47.826 0.00 0.00 40.28 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.