Multiple sequence alignment - TraesCS6B01G090800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G090800 chr6B 100.000 5390 0 0 1 5390 66757380 66751991 0.000000e+00 9954.0
1 TraesCS6B01G090800 chr6B 94.235 5030 204 27 430 5390 66787568 66782556 0.000000e+00 7603.0
2 TraesCS6B01G090800 chr6B 87.294 2188 209 42 1550 3696 66862630 66860471 0.000000e+00 2436.0
3 TraesCS6B01G090800 chr6B 87.038 2191 218 43 1550 3696 66945102 66942934 0.000000e+00 2412.0
4 TraesCS6B01G090800 chr6B 86.432 2189 224 36 1550 3696 66920501 66918344 0.000000e+00 2329.0
5 TraesCS6B01G090800 chr6B 90.136 811 60 13 3700 4498 66860514 66859712 0.000000e+00 1037.0
6 TraesCS6B01G090800 chr6B 90.012 811 64 10 3700 4499 66942977 66942173 0.000000e+00 1033.0
7 TraesCS6B01G090800 chr6B 89.778 812 64 12 3700 4499 66918387 66917583 0.000000e+00 1022.0
8 TraesCS6B01G090800 chr6B 84.427 899 71 24 498 1351 66863631 66862757 0.000000e+00 821.0
9 TraesCS6B01G090800 chr6B 83.885 906 73 25 498 1351 66921512 66920628 0.000000e+00 797.0
10 TraesCS6B01G090800 chr6B 91.832 404 28 5 30 431 643417893 643418293 4.720000e-155 558.0
11 TraesCS6B01G090800 chr6B 83.688 564 57 19 814 1359 66945764 66945218 2.900000e-137 499.0
12 TraesCS6B01G090800 chr6B 88.017 242 25 3 191 431 696899741 696899979 3.180000e-72 283.0
13 TraesCS6B01G090800 chr6B 84.656 189 13 5 498 678 66867487 66867307 2.000000e-39 174.0
14 TraesCS6B01G090800 chr6B 93.694 111 7 0 687 797 66945932 66945822 3.340000e-37 167.0
15 TraesCS6B01G090800 chr6B 100.000 46 0 0 684 729 66904672 66904627 9.620000e-13 86.1
16 TraesCS6B01G090800 chr6B 100.000 46 0 0 684 729 66927260 66927215 9.620000e-13 86.1
17 TraesCS6B01G090800 chr6B 100.000 43 0 0 687 729 66866430 66866388 4.480000e-11 80.5
18 TraesCS6B01G090800 chr6B 95.000 40 2 0 4565 4604 66917287 66917248 4.510000e-06 63.9
19 TraesCS6B01G090800 chrUn 88.562 2142 201 24 1550 3658 100490256 100492386 0.000000e+00 2558.0
20 TraesCS6B01G090800 chrUn 90.493 1704 116 27 3700 5390 100492390 100494060 0.000000e+00 2207.0
21 TraesCS6B01G090800 chrUn 87.081 1788 196 17 1550 3309 100637662 100639442 0.000000e+00 1989.0
22 TraesCS6B01G090800 chrUn 87.289 1597 142 25 2159 3696 100620877 100622471 0.000000e+00 1768.0
23 TraesCS6B01G090800 chrUn 90.752 811 59 10 3700 4499 100622428 100623233 0.000000e+00 1068.0
24 TraesCS6B01G090800 chrUn 90.885 768 53 10 3700 4456 344892063 344892824 0.000000e+00 1014.0
25 TraesCS6B01G090800 chrUn 89.026 811 72 12 3700 4499 100660693 100661497 0.000000e+00 989.0
26 TraesCS6B01G090800 chrUn 86.572 849 79 13 2881 3696 344891260 344892106 0.000000e+00 904.0
27 TraesCS6B01G090800 chrUn 82.668 877 71 33 482 1335 323635688 323636506 0.000000e+00 702.0
28 TraesCS6B01G090800 chrUn 82.668 877 71 33 482 1335 323667545 323668363 0.000000e+00 702.0
29 TraesCS6B01G090800 chrUn 82.668 877 71 33 482 1335 329023756 329024574 0.000000e+00 702.0
30 TraesCS6B01G090800 chrUn 82.668 877 71 33 482 1335 329103119 329103937 0.000000e+00 702.0
31 TraesCS6B01G090800 chrUn 82.668 877 71 33 482 1335 361925770 361926588 0.000000e+00 702.0
32 TraesCS6B01G090800 chrUn 82.440 877 74 32 482 1335 100489298 100490117 0.000000e+00 693.0
33 TraesCS6B01G090800 chrUn 88.071 394 34 4 3315 3696 100660344 100660736 6.360000e-124 455.0
34 TraesCS6B01G090800 chrUn 87.708 301 27 7 430 729 100627737 100628028 5.170000e-90 342.0
35 TraesCS6B01G090800 chrUn 88.444 225 18 5 430 654 100468680 100468896 1.150000e-66 265.0
36 TraesCS6B01G090800 chrUn 93.805 113 7 0 4489 4601 344892965 344893077 2.580000e-38 171.0
37 TraesCS6B01G090800 chrUn 92.920 113 8 0 4489 4601 100661646 100661758 1.200000e-36 165.0
38 TraesCS6B01G090800 chrUn 92.035 113 9 0 4489 4601 100623382 100623494 5.590000e-35 159.0
39 TraesCS6B01G090800 chrUn 92.523 107 7 1 430 536 100596635 100596740 9.350000e-33 152.0
40 TraesCS6B01G090800 chrUn 86.275 102 9 2 688 784 100488810 100488911 7.380000e-19 106.0
41 TraesCS6B01G090800 chrUn 88.172 93 3 3 482 574 100488664 100488748 2.660000e-18 104.0
42 TraesCS6B01G090800 chr6A 87.969 2186 218 20 1550 3696 36055972 36053793 0.000000e+00 2538.0
43 TraesCS6B01G090800 chr6A 87.837 2187 219 22 1550 3696 35990579 35988400 0.000000e+00 2521.0
44 TraesCS6B01G090800 chr6A 90.259 811 63 10 3700 4499 36053836 36053031 0.000000e+00 1046.0
45 TraesCS6B01G090800 chr6A 89.766 811 66 11 3700 4499 35988443 35987639 0.000000e+00 1022.0
46 TraesCS6B01G090800 chr6A 81.568 944 76 42 433 1341 36056985 36056105 0.000000e+00 689.0
47 TraesCS6B01G090800 chr6A 95.195 437 14 2 1 431 610225620 610225185 0.000000e+00 684.0
48 TraesCS6B01G090800 chr6A 82.086 815 68 34 550 1341 35991471 35990712 4.580000e-175 625.0
49 TraesCS6B01G090800 chr6A 91.379 116 10 0 4489 4604 35987490 35987375 5.590000e-35 159.0
50 TraesCS6B01G090800 chr6A 82.222 135 8 7 430 549 35991634 35991501 9.550000e-18 102.0
51 TraesCS6B01G090800 chr7A 87.963 1620 170 13 1636 3234 255897066 255895451 0.000000e+00 1888.0
52 TraesCS6B01G090800 chr7A 87.615 218 20 7 6 222 36256697 36256908 4.170000e-61 246.0
53 TraesCS6B01G090800 chr2B 100.000 431 0 0 1 431 373486240 373485810 0.000000e+00 797.0
54 TraesCS6B01G090800 chr2B 89.130 230 21 3 203 432 250060673 250060448 3.180000e-72 283.0
55 TraesCS6B01G090800 chr4B 88.136 413 43 6 4982 5390 359718016 359717606 2.260000e-133 486.0
56 TraesCS6B01G090800 chr5A 88.235 408 45 3 4986 5390 548462610 548462203 8.120000e-133 484.0
57 TraesCS6B01G090800 chr5A 87.745 408 47 3 4986 5390 548481556 548481149 1.760000e-129 473.0
58 TraesCS6B01G090800 chr5A 88.288 222 18 8 6 225 579997204 579997419 5.360000e-65 259.0
59 TraesCS6B01G090800 chr5A 84.524 84 7 5 1405 1482 570472785 570472868 1.610000e-10 78.7
60 TraesCS6B01G090800 chr4A 86.925 413 46 7 4982 5390 217590184 217589776 1.770000e-124 457.0
61 TraesCS6B01G090800 chr4A 80.328 122 21 3 1432 1551 674943173 674943053 7.440000e-14 89.8
62 TraesCS6B01G090800 chr4A 100.000 30 0 0 4652 4681 712846326 712846297 7.540000e-04 56.5
63 TraesCS6B01G090800 chr3A 85.749 407 55 3 4984 5388 532910811 532910406 1.390000e-115 427.0
64 TraesCS6B01G090800 chr3A 85.401 411 53 5 4986 5390 387280783 387280374 2.320000e-113 420.0
65 TraesCS6B01G090800 chr3A 87.764 237 24 4 196 431 44820689 44820457 6.880000e-69 272.0
66 TraesCS6B01G090800 chr5D 85.891 404 52 4 4989 5390 88464002 88464402 4.990000e-115 425.0
67 TraesCS6B01G090800 chr7B 88.627 255 24 4 178 431 158388049 158388299 6.780000e-79 305.0
68 TraesCS6B01G090800 chr3D 93.659 205 11 1 225 429 537340397 537340599 6.780000e-79 305.0
69 TraesCS6B01G090800 chr3B 89.238 223 21 2 209 431 739051013 739050794 5.320000e-70 276.0
70 TraesCS6B01G090800 chr3B 82.251 231 28 9 7 225 682248056 682248285 2.560000e-43 187.0
71 TraesCS6B01G090800 chr7D 89.640 222 13 8 6 225 457151366 457151153 1.910000e-69 274.0
72 TraesCS6B01G090800 chr7D 89.595 173 15 3 55 225 637729154 637729325 3.270000e-52 217.0
73 TraesCS6B01G090800 chr7D 85.542 83 5 4 1407 1482 495833950 495834032 4.480000e-11 80.5
74 TraesCS6B01G090800 chr7D 97.059 34 1 0 4646 4679 593685918 593685885 2.100000e-04 58.4
75 TraesCS6B01G090800 chr1B 85.650 223 26 6 6 224 576056289 576056509 4.200000e-56 230.0
76 TraesCS6B01G090800 chr5B 83.333 156 19 4 1403 1551 411092923 411093078 2.620000e-28 137.0
77 TraesCS6B01G090800 chr5B 83.582 67 8 3 1367 1431 585396080 585396015 5.830000e-05 60.2
78 TraesCS6B01G090800 chr6D 80.978 184 22 3 1378 1556 174399795 174399620 3.390000e-27 134.0
79 TraesCS6B01G090800 chr2D 78.974 195 33 6 1369 1556 60120622 60120815 5.670000e-25 126.0
80 TraesCS6B01G090800 chr1A 81.818 154 22 4 1409 1556 49034806 49034653 2.040000e-24 124.0
81 TraesCS6B01G090800 chr2A 81.333 150 22 4 1412 1556 38342884 38342736 3.410000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G090800 chr6B 66751991 66757380 5389 True 9954.000000 9954 100.000000 1 5390 1 chr6B.!!$R1 5389
1 TraesCS6B01G090800 chr6B 66782556 66787568 5012 True 7603.000000 7603 94.235000 430 5390 1 chr6B.!!$R2 4960
2 TraesCS6B01G090800 chr6B 66917248 66921512 4264 True 1052.975000 2329 88.773750 498 4604 4 chr6B.!!$R6 4106
3 TraesCS6B01G090800 chr6B 66942173 66945932 3759 True 1027.750000 2412 88.608000 687 4499 4 chr6B.!!$R7 3812
4 TraesCS6B01G090800 chr6B 66859712 66867487 7775 True 909.700000 2436 89.302600 498 4498 5 chr6B.!!$R5 4000
5 TraesCS6B01G090800 chrUn 100637662 100639442 1780 False 1989.000000 1989 87.081000 1550 3309 1 chrUn.!!$F4 1759
6 TraesCS6B01G090800 chrUn 100488664 100494060 5396 False 1133.600000 2558 87.188400 482 5390 5 chrUn.!!$F10 4908
7 TraesCS6B01G090800 chrUn 100620877 100623494 2617 False 998.333333 1768 90.025333 2159 4601 3 chrUn.!!$F11 2442
8 TraesCS6B01G090800 chrUn 323635688 323636506 818 False 702.000000 702 82.668000 482 1335 1 chrUn.!!$F5 853
9 TraesCS6B01G090800 chrUn 323667545 323668363 818 False 702.000000 702 82.668000 482 1335 1 chrUn.!!$F6 853
10 TraesCS6B01G090800 chrUn 329023756 329024574 818 False 702.000000 702 82.668000 482 1335 1 chrUn.!!$F7 853
11 TraesCS6B01G090800 chrUn 329103119 329103937 818 False 702.000000 702 82.668000 482 1335 1 chrUn.!!$F8 853
12 TraesCS6B01G090800 chrUn 361925770 361926588 818 False 702.000000 702 82.668000 482 1335 1 chrUn.!!$F9 853
13 TraesCS6B01G090800 chrUn 344891260 344893077 1817 False 696.333333 1014 90.420667 2881 4601 3 chrUn.!!$F13 1720
14 TraesCS6B01G090800 chrUn 100660344 100661758 1414 False 536.333333 989 90.005667 3315 4601 3 chrUn.!!$F12 1286
15 TraesCS6B01G090800 chr6A 36053031 36056985 3954 True 1424.333333 2538 86.598667 433 4499 3 chr6A.!!$R3 4066
16 TraesCS6B01G090800 chr6A 35987375 35991634 4259 True 885.800000 2521 86.658000 430 4604 5 chr6A.!!$R2 4174
17 TraesCS6B01G090800 chr7A 255895451 255897066 1615 True 1888.000000 1888 87.963000 1636 3234 1 chr7A.!!$R1 1598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 397 0.036671 AGGGTTCATTTCGTCCGACC 60.037 55.0 0.0 0.0 0.00 4.79 F
1561 5747 0.036105 TGCGTCACTGGAATGAGCAT 60.036 50.0 0.0 0.0 31.87 3.79 F
2208 6416 0.537371 AACACCCCTTCTTCTTGGCG 60.537 55.0 0.0 0.0 0.00 5.69 F
3956 8249 1.126488 GAGGCTCTGGGATGACATGA 58.874 55.0 7.4 0.0 0.00 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 6219 0.393132 TGCACTCACGTTTCCCAACA 60.393 50.0 0.00 0.00 32.54 3.33 R
2775 7025 0.907486 CTTGAGCCAGTCCCAGATCA 59.093 55.0 0.00 0.00 0.00 2.92 R
4044 8345 0.184692 TTTGGATGCACACCACCAGA 59.815 50.0 13.09 0.48 37.13 3.86 R
4828 9522 0.107017 GCCTAGTGTGCATGACCCAT 60.107 55.0 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.065473 TGAACATAAATATGCAATGAACTGGT 57.935 30.769 2.39 0.00 37.19 4.00
26 27 9.183368 TGAACATAAATATGCAATGAACTGGTA 57.817 29.630 2.39 0.00 37.19 3.25
36 37 7.010697 TGCAATGAACTGGTAATAATACACG 57.989 36.000 0.00 0.00 33.45 4.49
38 39 7.334671 TGCAATGAACTGGTAATAATACACGAA 59.665 33.333 0.00 0.00 33.45 3.85
118 119 8.777865 AAAGAAAGGAAAGAAACAGGAAAAAG 57.222 30.769 0.00 0.00 0.00 2.27
119 120 7.718334 AGAAAGGAAAGAAACAGGAAAAAGA 57.282 32.000 0.00 0.00 0.00 2.52
120 121 8.134202 AGAAAGGAAAGAAACAGGAAAAAGAA 57.866 30.769 0.00 0.00 0.00 2.52
122 123 7.718334 AAGGAAAGAAACAGGAAAAAGAAGA 57.282 32.000 0.00 0.00 0.00 2.87
123 124 7.718334 AGGAAAGAAACAGGAAAAAGAAGAA 57.282 32.000 0.00 0.00 0.00 2.52
124 125 8.134202 AGGAAAGAAACAGGAAAAAGAAGAAA 57.866 30.769 0.00 0.00 0.00 2.52
125 126 8.593679 AGGAAAGAAACAGGAAAAAGAAGAAAA 58.406 29.630 0.00 0.00 0.00 2.29
126 127 9.214957 GGAAAGAAACAGGAAAAAGAAGAAAAA 57.785 29.630 0.00 0.00 0.00 1.94
129 130 9.942850 AAGAAACAGGAAAAAGAAGAAAAATCA 57.057 25.926 0.00 0.00 0.00 2.57
132 133 8.579682 AACAGGAAAAAGAAGAAAAATCATCG 57.420 30.769 0.00 0.00 0.00 3.84
133 134 6.642540 ACAGGAAAAAGAAGAAAAATCATCGC 59.357 34.615 0.00 0.00 0.00 4.58
136 137 6.183359 GGAAAAAGAAGAAAAATCATCGCGAC 60.183 38.462 12.93 0.00 0.00 5.19
137 138 4.342352 AAGAAGAAAAATCATCGCGACC 57.658 40.909 12.93 0.00 0.00 4.79
138 139 2.678336 AGAAGAAAAATCATCGCGACCC 59.322 45.455 12.93 0.00 0.00 4.46
139 140 2.403252 AGAAAAATCATCGCGACCCT 57.597 45.000 12.93 0.00 0.00 4.34
141 142 1.064060 GAAAAATCATCGCGACCCTGG 59.936 52.381 12.93 0.00 0.00 4.45
142 143 0.748005 AAAATCATCGCGACCCTGGG 60.748 55.000 12.93 12.28 0.00 4.45
144 145 1.410850 AATCATCGCGACCCTGGGAT 61.411 55.000 22.23 3.23 41.65 3.85
146 147 4.241555 ATCGCGACCCTGGGATGC 62.242 66.667 22.23 20.51 39.72 3.91
162 163 3.508840 GCCCAAATGAGGCGTCGG 61.509 66.667 1.39 0.00 41.41 4.79
163 164 2.824041 CCCAAATGAGGCGTCGGG 60.824 66.667 1.39 2.38 0.00 5.14
164 165 2.046314 CCAAATGAGGCGTCGGGT 60.046 61.111 1.39 0.00 0.00 5.28
166 167 1.671054 CAAATGAGGCGTCGGGTGT 60.671 57.895 1.39 0.00 0.00 4.16
167 168 1.671054 AAATGAGGCGTCGGGTGTG 60.671 57.895 1.39 0.00 0.00 3.82
168 169 4.760047 ATGAGGCGTCGGGTGTGC 62.760 66.667 1.39 0.00 0.00 4.57
175 176 3.050275 GTCGGGTGTGCAGGCTTC 61.050 66.667 0.00 0.00 0.00 3.86
176 177 3.555324 TCGGGTGTGCAGGCTTCA 61.555 61.111 0.00 0.00 0.00 3.02
177 178 3.052082 CGGGTGTGCAGGCTTCAG 61.052 66.667 0.00 0.00 0.00 3.02
178 179 3.368571 GGGTGTGCAGGCTTCAGC 61.369 66.667 0.00 9.40 41.14 4.26
180 181 2.666190 GTGTGCAGGCTTCAGCGA 60.666 61.111 0.00 0.00 43.26 4.93
181 182 2.110835 TGTGCAGGCTTCAGCGAA 59.889 55.556 0.00 0.00 43.26 4.70
182 183 1.962822 TGTGCAGGCTTCAGCGAAG 60.963 57.895 12.17 12.17 43.26 3.79
196 197 2.612200 CGAAGCCACGTCCTTTTGA 58.388 52.632 0.00 0.00 0.00 2.69
197 198 0.234884 CGAAGCCACGTCCTTTTGAC 59.765 55.000 0.00 0.00 40.81 3.18
205 206 1.576421 GTCCTTTTGACGCCTGCAG 59.424 57.895 6.78 6.78 33.49 4.41
217 218 2.397751 CCTGCAGGCGTCAAATAGG 58.602 57.895 22.33 0.00 0.00 2.57
218 219 0.107703 CCTGCAGGCGTCAAATAGGA 60.108 55.000 22.33 0.00 0.00 2.94
219 220 1.475751 CCTGCAGGCGTCAAATAGGAT 60.476 52.381 22.33 0.00 0.00 3.24
220 221 1.869767 CTGCAGGCGTCAAATAGGATC 59.130 52.381 5.57 0.00 0.00 3.36
221 222 1.486310 TGCAGGCGTCAAATAGGATCT 59.514 47.619 0.00 0.00 0.00 2.75
224 225 1.202698 AGGCGTCAAATAGGATCTGCC 60.203 52.381 0.00 0.00 41.50 4.85
225 226 1.230324 GCGTCAAATAGGATCTGCCC 58.770 55.000 0.00 0.00 37.37 5.36
226 227 1.884235 CGTCAAATAGGATCTGCCCC 58.116 55.000 0.00 0.00 37.37 5.80
227 228 1.873903 CGTCAAATAGGATCTGCCCCG 60.874 57.143 0.00 0.00 37.37 5.73
228 229 0.764890 TCAAATAGGATCTGCCCCGG 59.235 55.000 0.00 0.00 37.37 5.73
230 231 1.697432 CAAATAGGATCTGCCCCGGTA 59.303 52.381 0.00 0.00 37.37 4.02
231 232 2.305927 CAAATAGGATCTGCCCCGGTAT 59.694 50.000 0.00 0.00 37.37 2.73
232 233 1.573108 ATAGGATCTGCCCCGGTATG 58.427 55.000 0.00 0.00 37.37 2.39
233 234 1.192146 TAGGATCTGCCCCGGTATGC 61.192 60.000 0.00 0.00 37.37 3.14
234 235 2.357517 GATCTGCCCCGGTATGCG 60.358 66.667 0.00 0.00 0.00 4.73
235 236 4.626081 ATCTGCCCCGGTATGCGC 62.626 66.667 0.00 0.00 0.00 6.09
240 241 4.499633 CCCCGGTATGCGCCCTTT 62.500 66.667 4.18 0.00 0.00 3.11
241 242 3.209097 CCCGGTATGCGCCCTTTG 61.209 66.667 4.18 0.00 0.00 2.77
242 243 3.209097 CCGGTATGCGCCCTTTGG 61.209 66.667 4.18 0.00 0.00 3.28
243 244 2.124901 CGGTATGCGCCCTTTGGA 60.125 61.111 4.18 0.00 0.00 3.53
244 245 1.747367 CGGTATGCGCCCTTTGGAA 60.747 57.895 4.18 0.00 0.00 3.53
247 248 1.480545 GGTATGCGCCCTTTGGAATTT 59.519 47.619 4.18 0.00 0.00 1.82
249 250 2.857186 ATGCGCCCTTTGGAATTTTT 57.143 40.000 4.18 0.00 0.00 1.94
250 251 1.876322 TGCGCCCTTTGGAATTTTTG 58.124 45.000 4.18 0.00 0.00 2.44
251 252 1.139853 TGCGCCCTTTGGAATTTTTGT 59.860 42.857 4.18 0.00 0.00 2.83
252 253 1.530720 GCGCCCTTTGGAATTTTTGTG 59.469 47.619 0.00 0.00 0.00 3.33
254 255 3.202097 CGCCCTTTGGAATTTTTGTGTT 58.798 40.909 0.00 0.00 0.00 3.32
255 256 3.625313 CGCCCTTTGGAATTTTTGTGTTT 59.375 39.130 0.00 0.00 0.00 2.83
257 258 4.637977 GCCCTTTGGAATTTTTGTGTTTGA 59.362 37.500 0.00 0.00 0.00 2.69
258 259 5.124617 GCCCTTTGGAATTTTTGTGTTTGAA 59.875 36.000 0.00 0.00 0.00 2.69
260 261 6.247176 CCTTTGGAATTTTTGTGTTTGAACG 58.753 36.000 0.00 0.00 0.00 3.95
262 263 7.360438 CCTTTGGAATTTTTGTGTTTGAACGAA 60.360 33.333 0.00 0.00 0.00 3.85
264 265 7.421530 TGGAATTTTTGTGTTTGAACGAAAA 57.578 28.000 5.25 5.25 43.91 2.29
265 266 7.861630 TGGAATTTTTGTGTTTGAACGAAAAA 58.138 26.923 13.86 13.86 43.33 1.94
298 299 2.511600 CGGCCCACCAGACGAATC 60.512 66.667 0.00 0.00 34.57 2.52
299 300 2.124695 GGCCCACCAGACGAATCC 60.125 66.667 0.00 0.00 35.26 3.01
300 301 2.124695 GCCCACCAGACGAATCCC 60.125 66.667 0.00 0.00 0.00 3.85
302 303 1.221840 CCCACCAGACGAATCCCAG 59.778 63.158 0.00 0.00 0.00 4.45
303 304 1.553690 CCCACCAGACGAATCCCAGT 61.554 60.000 0.00 0.00 0.00 4.00
304 305 0.324943 CCACCAGACGAATCCCAGTT 59.675 55.000 0.00 0.00 0.00 3.16
305 306 1.442769 CACCAGACGAATCCCAGTTG 58.557 55.000 0.00 0.00 0.00 3.16
306 307 1.001974 CACCAGACGAATCCCAGTTGA 59.998 52.381 0.00 0.00 0.00 3.18
307 308 1.697432 ACCAGACGAATCCCAGTTGAA 59.303 47.619 0.00 0.00 0.00 2.69
309 310 2.484264 CCAGACGAATCCCAGTTGAAAC 59.516 50.000 0.00 0.00 0.00 2.78
312 313 4.216257 CAGACGAATCCCAGTTGAAACAAT 59.784 41.667 0.00 0.00 0.00 2.71
313 314 4.216257 AGACGAATCCCAGTTGAAACAATG 59.784 41.667 0.00 0.00 0.00 2.82
314 315 3.888930 ACGAATCCCAGTTGAAACAATGT 59.111 39.130 0.00 0.00 0.00 2.71
315 316 4.023193 ACGAATCCCAGTTGAAACAATGTC 60.023 41.667 0.00 0.00 0.00 3.06
317 318 5.458041 AATCCCAGTTGAAACAATGTCAG 57.542 39.130 0.00 0.00 0.00 3.51
318 319 3.221771 TCCCAGTTGAAACAATGTCAGG 58.778 45.455 0.00 0.00 0.00 3.86
319 320 2.297033 CCCAGTTGAAACAATGTCAGGG 59.703 50.000 0.00 0.00 0.00 4.45
321 322 3.384467 CCAGTTGAAACAATGTCAGGGTT 59.616 43.478 0.00 0.00 0.00 4.11
322 323 4.141959 CCAGTTGAAACAATGTCAGGGTTT 60.142 41.667 4.76 4.76 37.44 3.27
323 324 4.805192 CAGTTGAAACAATGTCAGGGTTTG 59.195 41.667 8.81 0.00 35.08 2.93
325 326 5.363580 AGTTGAAACAATGTCAGGGTTTGAT 59.636 36.000 8.81 0.00 38.29 2.57
328 329 7.353414 TGAAACAATGTCAGGGTTTGATTTA 57.647 32.000 8.81 0.00 38.29 1.40
333 334 3.670625 TGTCAGGGTTTGATTTAGACCG 58.329 45.455 0.00 0.00 38.29 4.79
334 335 3.007635 GTCAGGGTTTGATTTAGACCGG 58.992 50.000 0.00 0.00 38.29 5.28
335 336 2.026636 TCAGGGTTTGATTTAGACCGGG 60.027 50.000 6.32 0.00 34.22 5.73
336 337 2.026636 CAGGGTTTGATTTAGACCGGGA 60.027 50.000 6.32 0.00 34.22 5.14
337 338 2.850568 AGGGTTTGATTTAGACCGGGAT 59.149 45.455 6.32 0.00 34.22 3.85
338 339 3.268595 AGGGTTTGATTTAGACCGGGATT 59.731 43.478 6.32 0.00 34.22 3.01
339 340 3.380320 GGGTTTGATTTAGACCGGGATTG 59.620 47.826 6.32 0.00 34.22 2.67
341 342 5.187687 GGTTTGATTTAGACCGGGATTGTA 58.812 41.667 6.32 0.00 0.00 2.41
342 343 5.826208 GGTTTGATTTAGACCGGGATTGTAT 59.174 40.000 6.32 0.00 0.00 2.29
345 346 6.989155 TGATTTAGACCGGGATTGTATAGT 57.011 37.500 6.32 0.00 0.00 2.12
346 347 7.369551 TGATTTAGACCGGGATTGTATAGTT 57.630 36.000 6.32 0.00 0.00 2.24
347 348 7.798071 TGATTTAGACCGGGATTGTATAGTTT 58.202 34.615 6.32 0.00 0.00 2.66
348 349 8.926374 TGATTTAGACCGGGATTGTATAGTTTA 58.074 33.333 6.32 0.00 0.00 2.01
349 350 9.420551 GATTTAGACCGGGATTGTATAGTTTAG 57.579 37.037 6.32 0.00 0.00 1.85
351 352 4.591924 AGACCGGGATTGTATAGTTTAGGG 59.408 45.833 6.32 0.00 0.00 3.53
352 353 4.301205 ACCGGGATTGTATAGTTTAGGGT 58.699 43.478 6.32 0.00 0.00 4.34
353 354 4.102054 ACCGGGATTGTATAGTTTAGGGTG 59.898 45.833 6.32 0.00 0.00 4.61
355 356 4.443739 CGGGATTGTATAGTTTAGGGTGCA 60.444 45.833 0.00 0.00 0.00 4.57
356 357 5.442391 GGGATTGTATAGTTTAGGGTGCAA 58.558 41.667 0.00 0.00 0.00 4.08
357 358 6.068670 GGGATTGTATAGTTTAGGGTGCAAT 58.931 40.000 0.00 0.00 31.16 3.56
359 360 6.073222 GGATTGTATAGTTTAGGGTGCAATCG 60.073 42.308 0.00 0.00 41.52 3.34
360 361 5.601583 TGTATAGTTTAGGGTGCAATCGA 57.398 39.130 0.00 0.00 0.00 3.59
361 362 5.353938 TGTATAGTTTAGGGTGCAATCGAC 58.646 41.667 0.00 0.00 0.00 4.20
364 365 0.391927 TTTAGGGTGCAATCGACCGG 60.392 55.000 0.00 0.00 33.89 5.28
367 368 2.189521 GGTGCAATCGACCGGGAT 59.810 61.111 6.32 0.00 0.00 3.85
368 369 1.451387 GGTGCAATCGACCGGGATT 60.451 57.895 6.32 2.83 37.11 3.01
369 370 1.029947 GGTGCAATCGACCGGGATTT 61.030 55.000 6.32 0.00 34.50 2.17
370 371 0.377203 GTGCAATCGACCGGGATTTC 59.623 55.000 6.32 0.99 34.50 2.17
374 375 0.822164 AATCGACCGGGATTTCGACT 59.178 50.000 16.08 3.70 46.41 4.18
375 376 0.822164 ATCGACCGGGATTTCGACTT 59.178 50.000 16.08 0.20 46.41 3.01
376 377 0.108992 TCGACCGGGATTTCGACTTG 60.109 55.000 10.52 0.00 39.29 3.16
377 378 0.108992 CGACCGGGATTTCGACTTGA 60.109 55.000 6.32 0.00 37.43 3.02
379 380 0.249398 ACCGGGATTTCGACTTGAGG 59.751 55.000 6.32 0.00 0.00 3.86
380 381 0.462047 CCGGGATTTCGACTTGAGGG 60.462 60.000 0.00 0.00 0.00 4.30
381 382 0.249398 CGGGATTTCGACTTGAGGGT 59.751 55.000 0.00 0.00 0.00 4.34
382 383 1.338769 CGGGATTTCGACTTGAGGGTT 60.339 52.381 0.00 0.00 0.00 4.11
383 384 2.357075 GGGATTTCGACTTGAGGGTTC 58.643 52.381 0.00 0.00 0.00 3.62
384 385 2.290071 GGGATTTCGACTTGAGGGTTCA 60.290 50.000 0.00 0.00 0.00 3.18
386 387 4.010349 GGATTTCGACTTGAGGGTTCATT 58.990 43.478 0.00 0.00 32.27 2.57
387 388 4.459337 GGATTTCGACTTGAGGGTTCATTT 59.541 41.667 0.00 0.00 32.27 2.32
388 389 5.392057 GGATTTCGACTTGAGGGTTCATTTC 60.392 44.000 0.00 0.00 32.27 2.17
389 390 2.683968 TCGACTTGAGGGTTCATTTCG 58.316 47.619 0.00 0.00 38.41 3.46
390 391 2.036733 TCGACTTGAGGGTTCATTTCGT 59.963 45.455 7.66 0.00 38.31 3.85
391 392 2.412089 CGACTTGAGGGTTCATTTCGTC 59.588 50.000 0.00 0.00 35.14 4.20
392 393 2.742589 GACTTGAGGGTTCATTTCGTCC 59.257 50.000 0.00 0.00 32.27 4.79
393 394 1.732259 CTTGAGGGTTCATTTCGTCCG 59.268 52.381 0.00 0.00 32.27 4.79
396 397 0.036671 AGGGTTCATTTCGTCCGACC 60.037 55.000 0.00 0.00 0.00 4.79
398 399 1.022982 GGTTCATTTCGTCCGACCCC 61.023 60.000 0.00 0.00 0.00 4.95
400 401 1.205417 GTTCATTTCGTCCGACCCCTA 59.795 52.381 0.00 0.00 0.00 3.53
401 402 0.819582 TCATTTCGTCCGACCCCTAC 59.180 55.000 0.00 0.00 0.00 3.18
402 403 0.533491 CATTTCGTCCGACCCCTACA 59.467 55.000 0.00 0.00 0.00 2.74
404 405 0.604578 TTTCGTCCGACCCCTACAAG 59.395 55.000 0.00 0.00 0.00 3.16
405 406 0.540365 TTCGTCCGACCCCTACAAGT 60.540 55.000 0.00 0.00 0.00 3.16
408 409 1.545582 CGTCCGACCCCTACAAGTTTA 59.454 52.381 0.00 0.00 0.00 2.01
409 410 2.029110 CGTCCGACCCCTACAAGTTTAA 60.029 50.000 0.00 0.00 0.00 1.52
411 412 2.568509 TCCGACCCCTACAAGTTTAAGG 59.431 50.000 0.00 0.00 0.00 2.69
412 413 2.303890 CCGACCCCTACAAGTTTAAGGT 59.696 50.000 0.00 0.00 0.00 3.50
413 414 3.244665 CCGACCCCTACAAGTTTAAGGTT 60.245 47.826 0.00 0.00 0.00 3.50
414 415 4.392047 CGACCCCTACAAGTTTAAGGTTT 58.608 43.478 0.68 0.00 0.00 3.27
415 416 5.512921 CCGACCCCTACAAGTTTAAGGTTTA 60.513 44.000 0.00 0.00 0.00 2.01
416 417 5.997129 CGACCCCTACAAGTTTAAGGTTTAA 59.003 40.000 0.68 0.00 0.00 1.52
419 420 8.786710 ACCCCTACAAGTTTAAGGTTTAAAAT 57.213 30.769 0.00 0.00 0.00 1.82
420 421 8.644216 ACCCCTACAAGTTTAAGGTTTAAAATG 58.356 33.333 0.00 2.58 0.00 2.32
422 423 8.862085 CCCTACAAGTTTAAGGTTTAAAATGGA 58.138 33.333 3.87 0.49 0.00 3.41
423 424 9.687210 CCTACAAGTTTAAGGTTTAAAATGGAC 57.313 33.333 3.87 0.00 0.00 4.02
529 683 3.707611 TGGCAGGACGTACAAATATAGGT 59.292 43.478 0.00 0.00 0.00 3.08
577 4633 3.741476 GCTCTTGCCAGTTGCGGG 61.741 66.667 0.00 0.00 45.60 6.13
578 4634 2.281761 CTCTTGCCAGTTGCGGGT 60.282 61.111 0.00 0.00 45.60 5.28
579 4635 2.594303 TCTTGCCAGTTGCGGGTG 60.594 61.111 0.00 0.00 45.60 4.61
580 4636 4.347453 CTTGCCAGTTGCGGGTGC 62.347 66.667 0.00 0.00 45.60 5.01
620 4676 2.049802 ACGAACGATGTCGCGGTT 60.050 55.556 6.13 0.88 45.00 4.44
636 4692 2.545106 GCGGTTTTTGTCTCCTAACGAA 59.455 45.455 0.00 0.00 0.00 3.85
772 4828 0.373370 TTAGCGCATGCATGACGTTC 59.627 50.000 30.64 18.43 46.23 3.95
956 5070 3.950397 ACAAAATCAGCCGATCAACCTA 58.050 40.909 0.00 0.00 0.00 3.08
1270 5411 5.252969 TCATGCATGTTTATTTGCCTCTC 57.747 39.130 25.43 0.00 38.08 3.20
1271 5412 4.951715 TCATGCATGTTTATTTGCCTCTCT 59.048 37.500 25.43 0.00 38.08 3.10
1272 5413 5.419788 TCATGCATGTTTATTTGCCTCTCTT 59.580 36.000 25.43 0.00 38.08 2.85
1431 5576 4.667161 GCACATGGCAAATCGAACATTTTG 60.667 41.667 5.11 5.11 43.97 2.44
1444 5590 6.734137 TCGAACATTTTGCAAGTTTAGTGAT 58.266 32.000 0.00 0.00 0.00 3.06
1454 5600 4.183865 CAAGTTTAGTGATGCGAGGATGA 58.816 43.478 0.00 0.00 0.00 2.92
1464 5610 3.678056 TGCGAGGATGACAACTTTAGT 57.322 42.857 0.00 0.00 0.00 2.24
1494 5640 1.955762 GCAACTTCATGCGTCAGTTC 58.044 50.000 0.00 0.00 36.45 3.01
1504 5650 4.278170 TCATGCGTCAGTTCCTTTTTCAAT 59.722 37.500 0.00 0.00 0.00 2.57
1561 5747 0.036105 TGCGTCACTGGAATGAGCAT 60.036 50.000 0.00 0.00 31.87 3.79
1568 5754 6.324819 CGTCACTGGAATGAGCATAATTTTT 58.675 36.000 0.00 0.00 0.00 1.94
1892 6090 3.953712 ACATAATGGACTCGTGTGTGA 57.046 42.857 0.00 0.00 0.00 3.58
1964 6162 6.744175 TGATGAGAGAAGCTGGATATTCTT 57.256 37.500 0.00 0.00 35.93 2.52
2032 6230 2.118228 CACACATGTGTTGGGAAACG 57.882 50.000 28.64 11.26 42.83 3.60
2058 6258 7.227314 GTGAGTGCAATTTGGTCTATGATGATA 59.773 37.037 0.00 0.00 0.00 2.15
2109 6309 3.243724 AGTCTTAGAGTGGCCAAGTTCT 58.756 45.455 7.24 13.92 0.00 3.01
2208 6416 0.537371 AACACCCCTTCTTCTTGGCG 60.537 55.000 0.00 0.00 0.00 5.69
2258 6466 9.605275 TTCACAAACAATAATGGTGATTTCAAA 57.395 25.926 0.00 0.00 38.19 2.69
2630 6870 9.503399 CTACACCCCTTCCATTATTAGTTATTC 57.497 37.037 0.00 0.00 0.00 1.75
2631 6871 8.114301 ACACCCCTTCCATTATTAGTTATTCT 57.886 34.615 0.00 0.00 0.00 2.40
2635 6875 8.224720 CCCCTTCCATTATTAGTTATTCTGGAA 58.775 37.037 0.00 0.00 38.58 3.53
2732 6980 2.887783 TCGCACAATTAATGGTGTGGTT 59.112 40.909 28.17 0.00 44.32 3.67
2856 7106 2.034812 GTGGTCCATGACTATCCTCGAC 59.965 54.545 0.00 0.00 32.47 4.20
3138 7403 9.742144 GAATATAGAGATGTTAGGACTGGTCTA 57.258 37.037 0.67 0.00 0.00 2.59
3316 7588 8.100791 GGGTTAGTTGAGACCATATGCATAATA 58.899 37.037 11.13 0.00 37.68 0.98
3491 7772 6.491403 AGCATGGATTTAACCCTATCAATCAC 59.509 38.462 0.00 0.00 0.00 3.06
3595 7880 5.648092 AGTACCACCTCACATATTTCTTTGC 59.352 40.000 0.00 0.00 0.00 3.68
3604 7889 8.292448 CCTCACATATTTCTTTGCACCATATAC 58.708 37.037 0.00 0.00 0.00 1.47
3610 7895 9.860650 ATATTTCTTTGCACCATATACCTTGTA 57.139 29.630 0.00 0.00 0.00 2.41
3696 7988 2.029918 GGAGTGGGCATCTTTGTTTGAC 60.030 50.000 0.00 0.00 0.00 3.18
3706 7998 6.035327 GGCATCTTTGTTTGACTAATTGCATC 59.965 38.462 0.00 0.00 30.06 3.91
3775 8068 2.930826 TCGAGGGAAAATGGCTATCC 57.069 50.000 0.00 0.00 0.00 2.59
3895 8188 6.350445 GGCATGATTTAACAGAGGACAACAAT 60.350 38.462 0.00 0.00 0.00 2.71
3956 8249 1.126488 GAGGCTCTGGGATGACATGA 58.874 55.000 7.40 0.00 0.00 3.07
3986 8279 6.660521 TGCAAAGGTCAGAATACATCAAGAAT 59.339 34.615 0.00 0.00 0.00 2.40
4063 8365 0.184692 TCTGGTGGTGTGCATCCAAA 59.815 50.000 13.77 6.34 36.68 3.28
4072 8374 3.928375 GGTGTGCATCCAAATTGACATTC 59.072 43.478 0.00 0.00 0.00 2.67
4073 8375 3.928375 GTGTGCATCCAAATTGACATTCC 59.072 43.478 0.00 0.00 0.00 3.01
4252 8555 6.183361 GGATCTAAACAGGGAATGCTTCTCTA 60.183 42.308 0.00 0.00 38.82 2.43
4254 8557 6.407202 TCTAAACAGGGAATGCTTCTCTAAC 58.593 40.000 0.00 0.00 38.82 2.34
4259 8562 4.946157 CAGGGAATGCTTCTCTAACACAAT 59.054 41.667 0.00 0.00 38.82 2.71
4302 8605 0.034896 TTGGGGCGTCTCTCAACTTC 59.965 55.000 0.00 0.00 0.00 3.01
4336 8639 4.040706 TCAGCATCATGTATGGCTATGACA 59.959 41.667 0.00 0.00 36.26 3.58
4450 8754 1.371635 GCGCACCATTTTTCGCAGT 60.372 52.632 0.30 0.00 45.99 4.40
4556 9199 1.031571 CAAATGCCTTGAGCCGCCTA 61.032 55.000 0.00 0.00 42.71 3.93
4649 9343 2.414559 GGAACTGTCAATGCACGGATTG 60.415 50.000 5.02 5.02 35.05 2.67
4744 9438 3.368531 GCGAACTTCTCACAGACCCTATT 60.369 47.826 0.00 0.00 0.00 1.73
4749 9443 1.833630 TCTCACAGACCCTATTGGCAG 59.166 52.381 0.00 0.00 37.83 4.85
4772 9466 2.171079 ACAAGTGCGTGTGACCGTG 61.171 57.895 0.00 0.00 0.00 4.94
4820 9514 1.061799 GATCTGCAACAACGCAAGCG 61.062 55.000 13.50 13.50 42.45 4.68
4828 9522 1.207339 CAACGCAAGCGCATTCAGA 59.793 52.632 15.09 0.00 44.19 3.27
4829 9523 0.179181 CAACGCAAGCGCATTCAGAT 60.179 50.000 15.09 0.00 44.19 2.90
4940 9634 7.512130 AGTTGATTCATCTATCAATAGCCACA 58.488 34.615 0.00 0.00 44.01 4.17
4942 9636 6.470278 TGATTCATCTATCAATAGCCACAGG 58.530 40.000 0.00 0.00 31.82 4.00
4966 9660 5.186996 TCTTTGGTTCAATCTTGTTCAGC 57.813 39.130 0.00 0.00 0.00 4.26
5240 9937 3.673594 CGAAGTAGTCCTCGTGCTGATTT 60.674 47.826 0.00 0.00 0.00 2.17
5322 10019 3.840078 TGCTGCAGATAGAGCCCATTATA 59.160 43.478 20.43 0.00 34.04 0.98
5337 10034 8.482852 AGCCCATTATAAATAGCACTCAATTT 57.517 30.769 6.71 0.00 0.00 1.82
5375 10072 5.593010 TGTTAACATGTGGTAAAAACCAGC 58.407 37.500 3.59 0.00 41.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.065473 ACCAGTTCATTGCATATTTATGTTCA 57.935 30.769 0.00 0.00 36.11 3.18
10 11 8.769891 CGTGTATTATTACCAGTTCATTGCATA 58.230 33.333 0.00 0.00 0.00 3.14
13 14 7.241663 TCGTGTATTATTACCAGTTCATTGC 57.758 36.000 0.00 0.00 0.00 3.56
17 18 9.491675 TCTTTTTCGTGTATTATTACCAGTTCA 57.508 29.630 0.00 0.00 0.00 3.18
91 92 9.567776 TTTTTCCTGTTTCTTTCCTTTCTTTTT 57.432 25.926 0.00 0.00 0.00 1.94
93 94 8.593679 TCTTTTTCCTGTTTCTTTCCTTTCTTT 58.406 29.630 0.00 0.00 0.00 2.52
96 97 8.251026 TCTTCTTTTTCCTGTTTCTTTCCTTTC 58.749 33.333 0.00 0.00 0.00 2.62
97 98 8.134202 TCTTCTTTTTCCTGTTTCTTTCCTTT 57.866 30.769 0.00 0.00 0.00 3.11
98 99 7.718334 TCTTCTTTTTCCTGTTTCTTTCCTT 57.282 32.000 0.00 0.00 0.00 3.36
99 100 7.718334 TTCTTCTTTTTCCTGTTTCTTTCCT 57.282 32.000 0.00 0.00 0.00 3.36
100 101 8.771920 TTTTCTTCTTTTTCCTGTTTCTTTCC 57.228 30.769 0.00 0.00 0.00 3.13
103 104 9.942850 TGATTTTTCTTCTTTTTCCTGTTTCTT 57.057 25.926 0.00 0.00 0.00 2.52
106 107 9.034544 CGATGATTTTTCTTCTTTTTCCTGTTT 57.965 29.630 0.00 0.00 0.00 2.83
109 110 6.183359 CGCGATGATTTTTCTTCTTTTTCCTG 60.183 38.462 0.00 0.00 0.00 3.86
110 111 5.858581 CGCGATGATTTTTCTTCTTTTTCCT 59.141 36.000 0.00 0.00 0.00 3.36
111 112 5.856455 TCGCGATGATTTTTCTTCTTTTTCC 59.144 36.000 3.71 0.00 0.00 3.13
112 113 6.183359 GGTCGCGATGATTTTTCTTCTTTTTC 60.183 38.462 14.06 0.00 0.00 2.29
114 115 5.154222 GGTCGCGATGATTTTTCTTCTTTT 58.846 37.500 14.06 0.00 0.00 2.27
115 116 4.379499 GGGTCGCGATGATTTTTCTTCTTT 60.379 41.667 14.06 0.00 0.00 2.52
116 117 3.127030 GGGTCGCGATGATTTTTCTTCTT 59.873 43.478 14.06 0.00 0.00 2.52
118 119 2.678336 AGGGTCGCGATGATTTTTCTTC 59.322 45.455 14.06 0.00 0.00 2.87
119 120 2.420022 CAGGGTCGCGATGATTTTTCTT 59.580 45.455 14.06 0.00 0.00 2.52
120 121 2.009774 CAGGGTCGCGATGATTTTTCT 58.990 47.619 14.06 0.00 0.00 2.52
122 123 1.094785 CCAGGGTCGCGATGATTTTT 58.905 50.000 14.06 0.00 0.00 1.94
123 124 0.748005 CCCAGGGTCGCGATGATTTT 60.748 55.000 14.06 0.00 0.00 1.82
124 125 1.153168 CCCAGGGTCGCGATGATTT 60.153 57.895 14.06 0.00 0.00 2.17
125 126 1.410850 ATCCCAGGGTCGCGATGATT 61.411 55.000 14.06 0.00 0.00 2.57
126 127 1.838846 ATCCCAGGGTCGCGATGAT 60.839 57.895 14.06 5.29 0.00 2.45
127 128 2.443952 ATCCCAGGGTCGCGATGA 60.444 61.111 14.06 2.92 0.00 2.92
128 129 2.280389 CATCCCAGGGTCGCGATG 60.280 66.667 14.06 6.66 0.00 3.84
129 130 4.241555 GCATCCCAGGGTCGCGAT 62.242 66.667 14.06 0.00 0.00 4.58
146 147 2.824041 CCCGACGCCTCATTTGGG 60.824 66.667 0.00 0.00 0.00 4.12
147 148 2.046314 ACCCGACGCCTCATTTGG 60.046 61.111 0.00 0.00 0.00 3.28
150 151 2.047274 CACACCCGACGCCTCATT 60.047 61.111 0.00 0.00 0.00 2.57
151 152 4.760047 GCACACCCGACGCCTCAT 62.760 66.667 0.00 0.00 0.00 2.90
158 159 3.050275 GAAGCCTGCACACCCGAC 61.050 66.667 0.00 0.00 0.00 4.79
159 160 3.535629 CTGAAGCCTGCACACCCGA 62.536 63.158 0.00 0.00 0.00 5.14
160 161 3.052082 CTGAAGCCTGCACACCCG 61.052 66.667 0.00 0.00 0.00 5.28
161 162 3.368571 GCTGAAGCCTGCACACCC 61.369 66.667 0.00 0.00 37.23 4.61
162 163 3.730761 CGCTGAAGCCTGCACACC 61.731 66.667 0.00 0.00 37.12 4.16
163 164 2.180131 CTTCGCTGAAGCCTGCACAC 62.180 60.000 5.58 0.00 37.12 3.82
164 165 1.962822 CTTCGCTGAAGCCTGCACA 60.963 57.895 5.58 0.00 37.12 4.57
172 173 2.383527 GGACGTGGCTTCGCTGAAG 61.384 63.158 12.17 12.17 42.03 3.02
173 174 2.357034 GGACGTGGCTTCGCTGAA 60.357 61.111 0.00 0.00 0.00 3.02
175 176 1.507141 AAAAGGACGTGGCTTCGCTG 61.507 55.000 0.00 0.00 0.00 5.18
176 177 1.227853 AAAAGGACGTGGCTTCGCT 60.228 52.632 0.00 0.00 0.00 4.93
177 178 1.082104 CAAAAGGACGTGGCTTCGC 60.082 57.895 0.00 0.00 0.00 4.70
178 179 0.234884 GTCAAAAGGACGTGGCTTCG 59.765 55.000 0.00 1.70 36.65 3.79
187 188 1.576421 CTGCAGGCGTCAAAAGGAC 59.424 57.895 5.57 0.00 43.36 3.85
188 189 1.600636 CCTGCAGGCGTCAAAAGGA 60.601 57.895 22.33 0.00 0.00 3.36
199 200 0.107703 TCCTATTTGACGCCTGCAGG 60.108 55.000 29.34 29.34 38.53 4.85
202 203 1.869767 CAGATCCTATTTGACGCCTGC 59.130 52.381 0.00 0.00 0.00 4.85
203 204 1.869767 GCAGATCCTATTTGACGCCTG 59.130 52.381 0.00 0.00 0.00 4.85
205 206 1.230324 GGCAGATCCTATTTGACGCC 58.770 55.000 0.00 0.00 0.00 5.68
208 209 1.543429 CCGGGGCAGATCCTATTTGAC 60.543 57.143 0.00 0.00 34.39 3.18
209 210 0.764890 CCGGGGCAGATCCTATTTGA 59.235 55.000 0.00 0.00 34.39 2.69
210 211 0.474184 ACCGGGGCAGATCCTATTTG 59.526 55.000 6.32 0.00 34.39 2.32
212 213 1.909302 CATACCGGGGCAGATCCTATT 59.091 52.381 6.32 0.00 34.39 1.73
213 214 1.573108 CATACCGGGGCAGATCCTAT 58.427 55.000 6.32 0.00 34.39 2.57
215 216 2.520536 GCATACCGGGGCAGATCCT 61.521 63.158 6.32 0.00 34.39 3.24
216 217 2.032681 GCATACCGGGGCAGATCC 59.967 66.667 6.32 0.00 0.00 3.36
217 218 2.357517 CGCATACCGGGGCAGATC 60.358 66.667 6.32 0.00 0.00 2.75
218 219 4.626081 GCGCATACCGGGGCAGAT 62.626 66.667 6.32 0.00 45.15 2.90
224 225 3.209097 CAAAGGGCGCATACCGGG 61.209 66.667 10.83 0.00 37.44 5.73
225 226 3.209097 CCAAAGGGCGCATACCGG 61.209 66.667 10.83 0.00 37.44 5.28
226 227 1.101049 ATTCCAAAGGGCGCATACCG 61.101 55.000 10.83 0.00 40.75 4.02
227 228 1.111277 AATTCCAAAGGGCGCATACC 58.889 50.000 10.83 0.09 0.00 2.73
228 229 2.959507 AAATTCCAAAGGGCGCATAC 57.040 45.000 10.83 0.00 0.00 2.39
230 231 2.224499 ACAAAAATTCCAAAGGGCGCAT 60.224 40.909 10.83 0.00 0.00 4.73
231 232 1.139853 ACAAAAATTCCAAAGGGCGCA 59.860 42.857 10.83 0.00 0.00 6.09
232 233 1.530720 CACAAAAATTCCAAAGGGCGC 59.469 47.619 0.00 0.00 0.00 6.53
233 234 2.832563 ACACAAAAATTCCAAAGGGCG 58.167 42.857 0.00 0.00 0.00 6.13
234 235 4.637977 TCAAACACAAAAATTCCAAAGGGC 59.362 37.500 0.00 0.00 0.00 5.19
235 236 6.550843 GTTCAAACACAAAAATTCCAAAGGG 58.449 36.000 0.00 0.00 0.00 3.95
237 238 7.054855 TCGTTCAAACACAAAAATTCCAAAG 57.945 32.000 0.00 0.00 0.00 2.77
238 239 7.421530 TTCGTTCAAACACAAAAATTCCAAA 57.578 28.000 0.00 0.00 0.00 3.28
240 241 7.421530 TTTTCGTTCAAACACAAAAATTCCA 57.578 28.000 0.00 0.00 0.00 3.53
280 281 4.096003 ATTCGTCTGGTGGGCCGG 62.096 66.667 0.00 0.00 42.59 6.13
281 282 2.511600 GATTCGTCTGGTGGGCCG 60.512 66.667 0.00 0.00 37.67 6.13
282 283 2.124695 GGATTCGTCTGGTGGGCC 60.125 66.667 0.00 0.00 0.00 5.80
283 284 2.124695 GGGATTCGTCTGGTGGGC 60.125 66.667 0.00 0.00 0.00 5.36
284 285 1.221840 CTGGGATTCGTCTGGTGGG 59.778 63.158 0.00 0.00 0.00 4.61
285 286 0.324943 AACTGGGATTCGTCTGGTGG 59.675 55.000 0.00 0.00 0.00 4.61
286 287 1.001974 TCAACTGGGATTCGTCTGGTG 59.998 52.381 0.00 0.00 0.00 4.17
289 290 3.138304 TGTTTCAACTGGGATTCGTCTG 58.862 45.455 0.00 0.00 0.00 3.51
290 291 3.485463 TGTTTCAACTGGGATTCGTCT 57.515 42.857 0.00 0.00 0.00 4.18
291 292 4.023193 ACATTGTTTCAACTGGGATTCGTC 60.023 41.667 0.00 0.00 0.00 4.20
292 293 3.888930 ACATTGTTTCAACTGGGATTCGT 59.111 39.130 0.00 0.00 0.00 3.85
293 294 4.023279 TGACATTGTTTCAACTGGGATTCG 60.023 41.667 0.00 0.00 0.00 3.34
295 296 4.281688 CCTGACATTGTTTCAACTGGGATT 59.718 41.667 0.00 0.00 0.00 3.01
296 297 3.828451 CCTGACATTGTTTCAACTGGGAT 59.172 43.478 0.00 0.00 0.00 3.85
298 299 2.297033 CCCTGACATTGTTTCAACTGGG 59.703 50.000 0.00 0.00 0.00 4.45
299 300 2.958355 ACCCTGACATTGTTTCAACTGG 59.042 45.455 0.00 0.00 0.00 4.00
300 301 4.654091 AACCCTGACATTGTTTCAACTG 57.346 40.909 0.00 0.00 0.00 3.16
302 303 5.004922 TCAAACCCTGACATTGTTTCAAC 57.995 39.130 0.00 0.00 30.19 3.18
303 304 5.867903 ATCAAACCCTGACATTGTTTCAA 57.132 34.783 0.00 0.00 36.69 2.69
304 305 5.867903 AATCAAACCCTGACATTGTTTCA 57.132 34.783 0.00 0.00 36.69 2.69
305 306 7.595130 GTCTAAATCAAACCCTGACATTGTTTC 59.405 37.037 0.00 0.00 36.69 2.78
306 307 7.433680 GTCTAAATCAAACCCTGACATTGTTT 58.566 34.615 0.00 0.00 36.69 2.83
307 308 6.015434 GGTCTAAATCAAACCCTGACATTGTT 60.015 38.462 0.00 0.00 36.69 2.83
309 310 5.391950 CGGTCTAAATCAAACCCTGACATTG 60.392 44.000 0.00 0.00 36.69 2.82
312 313 3.558321 CCGGTCTAAATCAAACCCTGACA 60.558 47.826 0.00 0.00 36.69 3.58
313 314 3.007635 CCGGTCTAAATCAAACCCTGAC 58.992 50.000 0.00 0.00 36.69 3.51
314 315 2.026636 CCCGGTCTAAATCAAACCCTGA 60.027 50.000 0.00 0.00 38.81 3.86
315 316 2.026636 TCCCGGTCTAAATCAAACCCTG 60.027 50.000 0.00 0.00 0.00 4.45
317 318 2.793288 TCCCGGTCTAAATCAAACCC 57.207 50.000 0.00 0.00 0.00 4.11
318 319 4.014406 ACAATCCCGGTCTAAATCAAACC 58.986 43.478 0.00 0.00 0.00 3.27
319 320 6.937436 ATACAATCCCGGTCTAAATCAAAC 57.063 37.500 0.00 0.00 0.00 2.93
321 322 7.369551 ACTATACAATCCCGGTCTAAATCAA 57.630 36.000 0.00 0.00 0.00 2.57
322 323 6.989155 ACTATACAATCCCGGTCTAAATCA 57.011 37.500 0.00 0.00 0.00 2.57
323 324 9.420551 CTAAACTATACAATCCCGGTCTAAATC 57.579 37.037 0.00 0.00 0.00 2.17
325 326 7.202029 CCCTAAACTATACAATCCCGGTCTAAA 60.202 40.741 0.00 0.00 0.00 1.85
328 329 4.591924 CCCTAAACTATACAATCCCGGTCT 59.408 45.833 0.00 0.00 0.00 3.85
333 334 5.043737 TGCACCCTAAACTATACAATCCC 57.956 43.478 0.00 0.00 0.00 3.85
334 335 6.073222 CGATTGCACCCTAAACTATACAATCC 60.073 42.308 0.00 0.00 39.13 3.01
335 336 6.704493 TCGATTGCACCCTAAACTATACAATC 59.296 38.462 0.00 0.00 39.01 2.67
336 337 6.482308 GTCGATTGCACCCTAAACTATACAAT 59.518 38.462 0.00 0.00 0.00 2.71
337 338 5.813672 GTCGATTGCACCCTAAACTATACAA 59.186 40.000 0.00 0.00 0.00 2.41
338 339 5.353938 GTCGATTGCACCCTAAACTATACA 58.646 41.667 0.00 0.00 0.00 2.29
339 340 4.748600 GGTCGATTGCACCCTAAACTATAC 59.251 45.833 0.00 0.00 0.00 1.47
341 342 3.740141 CGGTCGATTGCACCCTAAACTAT 60.740 47.826 0.00 0.00 0.00 2.12
342 343 2.417651 CGGTCGATTGCACCCTAAACTA 60.418 50.000 0.00 0.00 0.00 2.24
345 346 0.391927 CCGGTCGATTGCACCCTAAA 60.392 55.000 0.00 0.00 0.00 1.85
346 347 1.219664 CCGGTCGATTGCACCCTAA 59.780 57.895 0.00 0.00 0.00 2.69
347 348 2.727392 CCCGGTCGATTGCACCCTA 61.727 63.158 0.00 0.00 0.00 3.53
348 349 4.096003 CCCGGTCGATTGCACCCT 62.096 66.667 0.00 0.00 0.00 4.34
349 350 2.886730 AATCCCGGTCGATTGCACCC 62.887 60.000 0.00 0.00 31.19 4.61
351 352 0.377203 GAAATCCCGGTCGATTGCAC 59.623 55.000 6.70 0.16 32.75 4.57
352 353 1.087202 CGAAATCCCGGTCGATTGCA 61.087 55.000 6.34 0.00 39.64 4.08
353 354 0.808453 TCGAAATCCCGGTCGATTGC 60.808 55.000 10.52 6.13 41.13 3.56
355 356 0.822164 AGTCGAAATCCCGGTCGATT 59.178 50.000 16.67 10.69 46.91 3.34
356 357 0.822164 AAGTCGAAATCCCGGTCGAT 59.178 50.000 16.67 2.81 46.91 3.59
357 358 0.108992 CAAGTCGAAATCCCGGTCGA 60.109 55.000 10.52 10.52 43.61 4.20
359 360 1.641577 CTCAAGTCGAAATCCCGGTC 58.358 55.000 0.00 0.00 0.00 4.79
360 361 0.249398 CCTCAAGTCGAAATCCCGGT 59.751 55.000 0.00 0.00 0.00 5.28
361 362 0.462047 CCCTCAAGTCGAAATCCCGG 60.462 60.000 0.00 0.00 0.00 5.73
364 365 3.053831 TGAACCCTCAAGTCGAAATCC 57.946 47.619 0.00 0.00 0.00 3.01
367 368 3.496884 CGAAATGAACCCTCAAGTCGAAA 59.503 43.478 0.00 0.00 41.20 3.46
368 369 3.064207 CGAAATGAACCCTCAAGTCGAA 58.936 45.455 0.00 0.00 41.20 3.71
369 370 2.036733 ACGAAATGAACCCTCAAGTCGA 59.963 45.455 14.15 0.00 41.20 4.20
370 371 2.412089 GACGAAATGAACCCTCAAGTCG 59.588 50.000 0.00 8.44 42.90 4.18
372 373 2.779506 GGACGAAATGAACCCTCAAGT 58.220 47.619 0.00 0.00 34.49 3.16
374 375 1.345089 TCGGACGAAATGAACCCTCAA 59.655 47.619 0.00 0.00 34.49 3.02
375 376 0.970640 TCGGACGAAATGAACCCTCA 59.029 50.000 0.00 0.00 35.56 3.86
376 377 1.356938 GTCGGACGAAATGAACCCTC 58.643 55.000 0.00 0.00 0.00 4.30
377 378 0.036671 GGTCGGACGAAATGAACCCT 60.037 55.000 1.43 0.00 0.00 4.34
379 380 1.022982 GGGGTCGGACGAAATGAACC 61.023 60.000 1.43 0.00 38.82 3.62
380 381 0.036671 AGGGGTCGGACGAAATGAAC 60.037 55.000 1.43 0.00 0.00 3.18
381 382 1.205417 GTAGGGGTCGGACGAAATGAA 59.795 52.381 1.43 0.00 0.00 2.57
382 383 0.819582 GTAGGGGTCGGACGAAATGA 59.180 55.000 1.43 0.00 0.00 2.57
383 384 0.533491 TGTAGGGGTCGGACGAAATG 59.467 55.000 1.43 0.00 0.00 2.32
384 385 1.206371 CTTGTAGGGGTCGGACGAAAT 59.794 52.381 1.43 0.00 0.00 2.17
386 387 0.540365 ACTTGTAGGGGTCGGACGAA 60.540 55.000 1.43 0.00 0.00 3.85
387 388 0.540365 AACTTGTAGGGGTCGGACGA 60.540 55.000 1.43 0.00 0.00 4.20
388 389 0.319405 AAACTTGTAGGGGTCGGACG 59.681 55.000 1.43 0.00 0.00 4.79
389 390 3.593096 CTTAAACTTGTAGGGGTCGGAC 58.407 50.000 0.00 0.00 0.00 4.79
390 391 2.568509 CCTTAAACTTGTAGGGGTCGGA 59.431 50.000 0.00 0.00 0.00 4.55
391 392 2.303890 ACCTTAAACTTGTAGGGGTCGG 59.696 50.000 0.00 0.00 33.22 4.79
392 393 3.690475 ACCTTAAACTTGTAGGGGTCG 57.310 47.619 0.00 0.00 33.22 4.79
393 394 7.822161 TTTAAACCTTAAACTTGTAGGGGTC 57.178 36.000 0.00 0.00 33.22 4.46
396 397 8.862085 TCCATTTTAAACCTTAAACTTGTAGGG 58.138 33.333 0.00 0.00 33.22 3.53
428 429 0.397187 TTGACCGGTTTTCCATCGGA 59.603 50.000 9.42 0.00 45.96 4.55
441 442 1.128692 GAAAAGTCTGCCGATTGACCG 59.871 52.381 0.00 0.00 34.02 4.79
538 730 5.649395 AGCCACACACGTAATAAGTACTCTA 59.351 40.000 0.00 0.00 0.00 2.43
541 733 4.461781 AGAGCCACACACGTAATAAGTACT 59.538 41.667 0.00 0.00 0.00 2.73
542 734 4.741342 AGAGCCACACACGTAATAAGTAC 58.259 43.478 0.00 0.00 0.00 2.73
543 735 5.165676 CAAGAGCCACACACGTAATAAGTA 58.834 41.667 0.00 0.00 0.00 2.24
544 736 3.955650 AGAGCCACACACGTAATAAGT 57.044 42.857 0.00 0.00 0.00 2.24
545 737 3.181520 GCAAGAGCCACACACGTAATAAG 60.182 47.826 0.00 0.00 33.58 1.73
546 738 2.739913 GCAAGAGCCACACACGTAATAA 59.260 45.455 0.00 0.00 33.58 1.40
547 739 2.343101 GCAAGAGCCACACACGTAATA 58.657 47.619 0.00 0.00 33.58 0.98
548 740 1.156736 GCAAGAGCCACACACGTAAT 58.843 50.000 0.00 0.00 33.58 1.89
574 4630 3.129502 CTCCATGCACTGCACCCG 61.130 66.667 5.67 0.00 43.04 5.28
575 4631 0.895100 TTTCTCCATGCACTGCACCC 60.895 55.000 5.67 0.00 43.04 4.61
576 4632 0.242017 GTTTCTCCATGCACTGCACC 59.758 55.000 5.67 0.00 43.04 5.01
577 4633 0.242017 GGTTTCTCCATGCACTGCAC 59.758 55.000 5.67 0.00 43.04 4.57
578 4634 1.236616 CGGTTTCTCCATGCACTGCA 61.237 55.000 6.09 6.09 44.86 4.41
579 4635 1.237285 ACGGTTTCTCCATGCACTGC 61.237 55.000 0.00 0.00 35.57 4.40
580 4636 0.518636 CACGGTTTCTCCATGCACTG 59.481 55.000 0.00 0.00 35.57 3.66
581 4637 0.108585 ACACGGTTTCTCCATGCACT 59.891 50.000 0.00 0.00 31.89 4.40
582 4638 0.238289 CACACGGTTTCTCCATGCAC 59.762 55.000 0.00 0.00 31.89 4.57
587 4643 4.134623 GTGCACACGGTTTCTCCA 57.865 55.556 13.17 0.00 35.57 3.86
620 4676 4.342951 TCTGGTCTTCGTTAGGAGACAAAA 59.657 41.667 8.94 0.00 33.35 2.44
636 4692 4.523083 GACTCTGATGTCTAGTCTGGTCT 58.477 47.826 0.00 0.00 37.30 3.85
678 4734 0.826672 TGAACCATGCATGCACCACA 60.827 50.000 25.37 15.58 0.00 4.17
772 4828 4.414852 CGAGCCATGTGGAAATTTTACTG 58.585 43.478 2.55 0.00 37.39 2.74
1148 5279 1.037579 ATCGTCGGACAGCTCATGGA 61.038 55.000 9.10 0.00 0.00 3.41
1382 5527 1.651987 CTGACATTCGGCGTTACCAT 58.348 50.000 6.85 0.00 39.03 3.55
1392 5537 1.269166 GTGCTCGTACCTGACATTCG 58.731 55.000 0.00 0.00 0.00 3.34
1421 5566 6.614162 GCATCACTAAACTTGCAAAATGTTCG 60.614 38.462 0.00 0.00 35.22 3.95
1431 5576 2.346803 TCCTCGCATCACTAAACTTGC 58.653 47.619 0.00 0.00 0.00 4.01
1440 5586 2.015736 AGTTGTCATCCTCGCATCAC 57.984 50.000 0.00 0.00 0.00 3.06
1444 5590 3.678056 ACTAAAGTTGTCATCCTCGCA 57.322 42.857 0.00 0.00 0.00 5.10
1504 5650 3.206964 TGACACACACGGCAATTTTCTA 58.793 40.909 0.00 0.00 0.00 2.10
1706 5901 9.122613 GAGCAAACTTCTTTTTAGCAAGAATAG 57.877 33.333 0.00 0.00 41.06 1.73
1748 5946 4.458989 TGCTTGAACATTCGATAGGCTTTT 59.541 37.500 0.00 0.00 0.00 2.27
1794 5992 3.250762 CGTGCTCAACATTCCTTTTCTGA 59.749 43.478 0.00 0.00 0.00 3.27
1940 6138 6.744175 AGAATATCCAGCTTCTCTCATCAA 57.256 37.500 0.00 0.00 0.00 2.57
1964 6162 5.310451 AGTATTTTACTGACCTGCCGAAAA 58.690 37.500 0.00 0.00 37.69 2.29
2021 6219 0.393132 TGCACTCACGTTTCCCAACA 60.393 50.000 0.00 0.00 32.54 3.33
2032 6230 5.355071 TCATCATAGACCAAATTGCACTCAC 59.645 40.000 0.00 0.00 0.00 3.51
2124 6329 3.821033 GGTGTTTCTATGCTCCACAAAGT 59.179 43.478 0.00 0.00 0.00 2.66
2191 6396 3.987404 CGCCAAGAAGAAGGGGTG 58.013 61.111 0.00 0.00 33.55 4.61
2208 6416 0.716108 CGAAGAACATCGTCTGCCAC 59.284 55.000 0.00 0.00 38.01 5.01
2258 6466 4.576330 AAGGTCTTTGCTATGCCTAAGT 57.424 40.909 0.00 0.00 0.00 2.24
2630 6870 4.034285 AGGTAGGTGGACAAATTTCCAG 57.966 45.455 0.00 0.00 46.75 3.86
2631 6871 5.789574 ATAGGTAGGTGGACAAATTTCCA 57.210 39.130 0.00 0.00 43.83 3.53
2635 6875 6.134535 TGTCAATAGGTAGGTGGACAAATT 57.865 37.500 0.00 0.00 32.85 1.82
2641 6881 4.942944 TCTCTTGTCAATAGGTAGGTGGA 58.057 43.478 0.00 0.00 0.00 4.02
2695 6943 4.006319 TGTGCGAATACATGACCAATGAA 58.994 39.130 0.00 0.00 38.72 2.57
2696 6944 3.604582 TGTGCGAATACATGACCAATGA 58.395 40.909 0.00 0.00 38.72 2.57
2697 6945 4.354071 TTGTGCGAATACATGACCAATG 57.646 40.909 0.00 0.00 42.48 2.82
2698 6946 5.581126 AATTGTGCGAATACATGACCAAT 57.419 34.783 0.00 0.00 0.00 3.16
2775 7025 0.907486 CTTGAGCCAGTCCCAGATCA 59.093 55.000 0.00 0.00 0.00 2.92
2812 7062 6.429692 CACATGTACCATTTCAGAACTTGGTA 59.570 38.462 15.78 15.78 42.35 3.25
2856 7106 6.183360 CCCGATATCTAGAGAAGGATAAACCG 60.183 46.154 12.24 0.00 44.74 4.44
3324 7605 8.612619 ACTTTGTGTGTGAAACTTCTATAACAG 58.387 33.333 0.00 0.00 38.04 3.16
3491 7772 5.971763 AGTAGACATACTGCTTTCTTGAGG 58.028 41.667 0.00 0.00 40.84 3.86
3732 8025 8.562052 CGATCATGAATCCATCAAACAAAGATA 58.438 33.333 0.00 0.00 42.54 1.98
3775 8068 6.933521 CCTTTGATGTAGGGATCTGATTAGTG 59.066 42.308 0.00 0.00 0.00 2.74
3916 8209 0.627451 TGATCTTTGCAGGGCAGGAT 59.373 50.000 7.94 7.94 40.61 3.24
3956 8249 3.327757 TGTATTCTGACCTTTGCACTCCT 59.672 43.478 0.00 0.00 0.00 3.69
4044 8345 0.184692 TTTGGATGCACACCACCAGA 59.815 50.000 13.09 0.48 37.13 3.86
4063 8365 5.721000 TCAGCCTAATTTTGGGAATGTCAAT 59.279 36.000 0.00 0.00 0.00 2.57
4072 8374 5.920193 TTTCAGATCAGCCTAATTTTGGG 57.080 39.130 0.00 0.00 0.00 4.12
4073 8375 7.161773 TCTTTTCAGATCAGCCTAATTTTGG 57.838 36.000 0.00 0.00 0.00 3.28
4252 8555 3.211045 GTGGTAGTGTGGACATTGTGTT 58.789 45.455 0.00 0.00 0.00 3.32
4254 8557 2.151202 GGTGGTAGTGTGGACATTGTG 58.849 52.381 0.00 0.00 0.00 3.33
4259 8562 1.203137 AGCTAGGTGGTAGTGTGGACA 60.203 52.381 0.00 0.00 0.00 4.02
4302 8605 2.020131 GATGCTGACCATCCTTGCG 58.980 57.895 0.00 0.00 43.72 4.85
4450 8754 0.178301 TCACGTACAACTGGGCAACA 59.822 50.000 0.00 0.00 39.74 3.33
4532 9175 1.000385 CGGCTCAAGGCATTTGACAAA 60.000 47.619 2.48 2.48 40.82 2.83
4541 9184 2.803155 CTTGTAGGCGGCTCAAGGCA 62.803 60.000 27.86 15.40 44.01 4.75
4624 9318 2.945008 CCGTGCATTGACAGTTCCATAT 59.055 45.455 0.00 0.00 0.00 1.78
4629 9323 2.855180 CAATCCGTGCATTGACAGTTC 58.145 47.619 0.00 0.00 36.03 3.01
4649 9343 3.764972 AGGCGGATTAGGATCTAACTAGC 59.235 47.826 0.00 0.00 32.66 3.42
4704 9398 4.655762 TCGCTATGCACAAGAGAACTAT 57.344 40.909 2.10 0.00 0.00 2.12
4720 9414 1.544691 GGGTCTGTGAGAAGTTCGCTA 59.455 52.381 8.14 0.00 37.22 4.26
4744 9438 2.545596 CGCACTTGTGCTTCTGCCA 61.546 57.895 21.17 0.00 38.71 4.92
4749 9443 0.316196 GTCACACGCACTTGTGCTTC 60.316 55.000 21.17 0.00 45.58 3.86
4786 9480 3.075005 ATCACTGGCCGCCGTACT 61.075 61.111 4.58 0.00 0.00 2.73
4820 9514 1.066605 GTGCATGACCCATCTGAATGC 59.933 52.381 0.00 3.42 43.08 3.56
4828 9522 0.107017 GCCTAGTGTGCATGACCCAT 60.107 55.000 0.00 0.00 0.00 4.00
4829 9523 1.299648 GCCTAGTGTGCATGACCCA 59.700 57.895 0.00 0.00 0.00 4.51
4916 9610 7.094890 CCTGTGGCTATTGATAGATGAATCAAC 60.095 40.741 1.63 0.00 45.90 3.18
4926 9620 5.297776 CCAAAGAACCTGTGGCTATTGATAG 59.702 44.000 0.00 0.00 31.50 2.08
4940 9634 5.656416 TGAACAAGATTGAACCAAAGAACCT 59.344 36.000 0.00 0.00 0.00 3.50
4942 9636 5.460091 GCTGAACAAGATTGAACCAAAGAAC 59.540 40.000 0.00 0.00 0.00 3.01
4966 9660 5.382618 AAAAGTATTTCCTGCAAGCAGAG 57.617 39.130 22.76 12.85 41.50 3.35
5114 9810 4.450053 AGCAAATGAGGTAGCAGATTCTC 58.550 43.478 0.00 0.00 0.00 2.87
5154 9850 5.622770 ATGATTTTGGGACAGTTTCGTAC 57.377 39.130 0.00 0.00 42.39 3.67
5322 10019 6.930164 TGATTGTGCAAAATTGAGTGCTATTT 59.070 30.769 2.99 0.00 41.48 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.