Multiple sequence alignment - TraesCS6B01G090300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G090300 chr6B 100.000 3893 0 0 796 4688 66453628 66457520 0.000000e+00 7190
1 TraesCS6B01G090300 chr6B 100.000 459 0 0 1 459 66452833 66453291 0.000000e+00 848
2 TraesCS6B01G090300 chr6B 83.033 778 83 24 3606 4355 440527120 440527876 0.000000e+00 660
3 TraesCS6B01G090300 chrUn 91.028 1984 105 24 2258 4230 100782041 100780120 0.000000e+00 2610
4 TraesCS6B01G090300 chrUn 85.890 652 49 25 812 1449 100783711 100783089 0.000000e+00 654
5 TraesCS6B01G090300 chrUn 89.091 495 34 7 1624 2102 100783056 100782566 8.680000e-167 597
6 TraesCS6B01G090300 chrUn 85.169 236 15 10 224 457 100783984 100783767 1.700000e-54 224
7 TraesCS6B01G090300 chr6A 87.703 2212 162 51 796 2925 35642684 35644867 0.000000e+00 2477
8 TraesCS6B01G090300 chr6A 91.148 836 53 12 3386 4217 35645563 35646381 0.000000e+00 1114
9 TraesCS6B01G090300 chr6A 91.540 721 46 6 1780 2495 53687889 53687179 0.000000e+00 979
10 TraesCS6B01G090300 chr6A 90.871 723 53 5 1780 2498 245229976 245229263 0.000000e+00 957
11 TraesCS6B01G090300 chr6A 90.833 720 52 6 1780 2495 62870936 62871645 0.000000e+00 952
12 TraesCS6B01G090300 chr6A 84.321 759 83 13 1048 1781 62870148 62870895 0.000000e+00 710
13 TraesCS6B01G090300 chr6A 83.617 763 92 12 1042 1781 53688682 53687930 0.000000e+00 686
14 TraesCS6B01G090300 chr6A 83.137 765 92 19 1042 1781 245230768 245230016 0.000000e+00 664
15 TraesCS6B01G090300 chr6A 86.266 466 37 7 2924 3387 35645026 35645466 9.120000e-132 481
16 TraesCS6B01G090300 chr6A 90.909 242 13 5 224 459 35642401 35642639 2.720000e-82 316
17 TraesCS6B01G090300 chr6A 81.612 397 51 21 4293 4685 35646497 35646875 4.560000e-80 309
18 TraesCS6B01G090300 chr4A 91.794 719 46 10 1780 2495 39720884 39721592 0.000000e+00 989
19 TraesCS6B01G090300 chr4A 84.967 765 79 13 1042 1781 39720090 39720843 0.000000e+00 743
20 TraesCS6B01G090300 chr3A 91.298 724 49 7 1780 2498 37897401 37896687 0.000000e+00 976
21 TraesCS6B01G090300 chr3A 91.286 723 50 10 1780 2498 149406950 149406237 0.000000e+00 974
22 TraesCS6B01G090300 chr3A 91.286 723 50 5 1780 2498 628780581 628779868 0.000000e+00 974
23 TraesCS6B01G090300 chr3A 84.121 762 91 10 1042 1781 149407752 149406999 0.000000e+00 710
24 TraesCS6B01G090300 chr3A 84.016 757 88 13 1048 1781 37898189 37897443 0.000000e+00 697
25 TraesCS6B01G090300 chr7A 91.250 720 50 5 1780 2495 458346729 458347439 0.000000e+00 968
26 TraesCS6B01G090300 chr7A 85.231 562 71 9 1042 1600 458334562 458335114 6.810000e-158 568
27 TraesCS6B01G090300 chr7B 91.111 720 51 5 1780 2495 745074452 745075162 0.000000e+00 963
28 TraesCS6B01G090300 chr7B 84.404 763 84 19 1042 1781 745073661 745074411 0.000000e+00 717
29 TraesCS6B01G090300 chr7B 86.519 586 63 13 1047 1628 630507296 630507869 8.560000e-177 630
30 TraesCS6B01G090300 chr7B 84.941 591 73 11 1042 1628 6962383 6962961 6.760000e-163 584
31 TraesCS6B01G090300 chr7B 86.598 388 41 5 1244 1628 612597038 612597417 7.260000e-113 418
32 TraesCS6B01G090300 chr2D 82.360 788 80 32 3606 4355 172547255 172546489 8.560000e-177 630
33 TraesCS6B01G090300 chr3B 85.085 590 74 10 1042 1628 791023914 791024492 1.450000e-164 590
34 TraesCS6B01G090300 chr5B 85.099 557 65 13 1078 1629 23308086 23307543 1.910000e-153 553
35 TraesCS6B01G090300 chr5B 87.898 157 12 6 3606 3758 327001045 327000892 1.340000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G090300 chr6B 66452833 66457520 4687 False 4019.00 7190 100.0000 1 4688 2 chr6B.!!$F2 4687
1 TraesCS6B01G090300 chr6B 440527120 440527876 756 False 660.00 660 83.0330 3606 4355 1 chr6B.!!$F1 749
2 TraesCS6B01G090300 chrUn 100780120 100783984 3864 True 1021.25 2610 87.7945 224 4230 4 chrUn.!!$R1 4006
3 TraesCS6B01G090300 chr6A 35642401 35646875 4474 False 939.40 2477 87.5276 224 4685 5 chr6A.!!$F1 4461
4 TraesCS6B01G090300 chr6A 53687179 53688682 1503 True 832.50 979 87.5785 1042 2495 2 chr6A.!!$R1 1453
5 TraesCS6B01G090300 chr6A 62870148 62871645 1497 False 831.00 952 87.5770 1048 2495 2 chr6A.!!$F2 1447
6 TraesCS6B01G090300 chr6A 245229263 245230768 1505 True 810.50 957 87.0040 1042 2498 2 chr6A.!!$R2 1456
7 TraesCS6B01G090300 chr4A 39720090 39721592 1502 False 866.00 989 88.3805 1042 2495 2 chr4A.!!$F1 1453
8 TraesCS6B01G090300 chr3A 628779868 628780581 713 True 974.00 974 91.2860 1780 2498 1 chr3A.!!$R1 718
9 TraesCS6B01G090300 chr3A 149406237 149407752 1515 True 842.00 974 87.7035 1042 2498 2 chr3A.!!$R3 1456
10 TraesCS6B01G090300 chr3A 37896687 37898189 1502 True 836.50 976 87.6570 1048 2498 2 chr3A.!!$R2 1450
11 TraesCS6B01G090300 chr7A 458346729 458347439 710 False 968.00 968 91.2500 1780 2495 1 chr7A.!!$F2 715
12 TraesCS6B01G090300 chr7A 458334562 458335114 552 False 568.00 568 85.2310 1042 1600 1 chr7A.!!$F1 558
13 TraesCS6B01G090300 chr7B 745073661 745075162 1501 False 840.00 963 87.7575 1042 2495 2 chr7B.!!$F4 1453
14 TraesCS6B01G090300 chr7B 630507296 630507869 573 False 630.00 630 86.5190 1047 1628 1 chr7B.!!$F3 581
15 TraesCS6B01G090300 chr7B 6962383 6962961 578 False 584.00 584 84.9410 1042 1628 1 chr7B.!!$F1 586
16 TraesCS6B01G090300 chr2D 172546489 172547255 766 True 630.00 630 82.3600 3606 4355 1 chr2D.!!$R1 749
17 TraesCS6B01G090300 chr3B 791023914 791024492 578 False 590.00 590 85.0850 1042 1628 1 chr3B.!!$F1 586
18 TraesCS6B01G090300 chr5B 23307543 23308086 543 True 553.00 553 85.0990 1078 1629 1 chr5B.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 891 0.321996 GGCTTCCTTGGTCTCTCGTT 59.678 55.0 0.00 0.00 0.0 3.85 F
1192 1218 0.108662 TAGTGTCCACATCAGCAGCG 60.109 55.0 0.00 0.00 0.0 5.18 F
1196 1222 0.531532 GTCCACATCAGCAGCGCTAT 60.532 55.0 10.99 0.00 36.4 2.97 F
1198 1224 0.585357 CCACATCAGCAGCGCTATTC 59.415 55.0 10.99 1.89 36.4 1.75 F
1618 1653 0.901124 AGCAGCACTTGACTAGGAGG 59.099 55.0 0.00 0.00 0.0 4.30 F
2662 3191 0.179073 ACCAGTGAGTGTGTGACAGC 60.179 55.0 0.00 0.00 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 2704 0.322456 TTTCCAGATCGCCCACAAGG 60.322 55.000 0.00 0.00 39.47 3.61 R
2384 2893 0.542702 ATGGCCACCAACCTGGAAAG 60.543 55.000 8.16 0.00 40.96 2.62 R
2647 3176 0.870393 CCATGCTGTCACACACTCAC 59.130 55.000 0.00 0.00 0.00 3.51 R
2650 3179 2.928801 TTACCATGCTGTCACACACT 57.071 45.000 0.00 0.00 0.00 3.55 R
3354 4047 1.863454 CACGATGCTCAATGGACTAGC 59.137 52.381 0.00 0.00 36.77 3.42 R
3712 4507 0.106521 TGCTTAGTGTGCAGCAGACA 59.893 50.000 23.71 7.94 41.20 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.063180 CAAATTCTAAATCCTGCACTGCA 57.937 39.130 3.11 3.11 36.92 4.41
23 24 5.657474 CAAATTCTAAATCCTGCACTGCAT 58.343 37.500 3.64 0.00 38.13 3.96
24 25 4.913335 ATTCTAAATCCTGCACTGCATG 57.087 40.909 3.64 1.66 38.13 4.06
25 26 3.354948 TCTAAATCCTGCACTGCATGT 57.645 42.857 3.64 0.00 38.13 3.21
26 27 4.486125 TCTAAATCCTGCACTGCATGTA 57.514 40.909 3.64 0.00 38.13 2.29
27 28 4.842574 TCTAAATCCTGCACTGCATGTAA 58.157 39.130 3.64 0.00 38.13 2.41
28 29 4.877823 TCTAAATCCTGCACTGCATGTAAG 59.122 41.667 3.64 0.00 38.13 2.34
29 30 3.354948 AATCCTGCACTGCATGTAAGA 57.645 42.857 3.64 0.00 38.13 2.10
30 31 2.099141 TCCTGCACTGCATGTAAGAC 57.901 50.000 3.64 0.00 38.13 3.01
31 32 1.347378 TCCTGCACTGCATGTAAGACA 59.653 47.619 3.64 2.53 38.13 3.41
32 33 2.153645 CCTGCACTGCATGTAAGACAA 58.846 47.619 3.64 0.00 38.13 3.18
33 34 2.161012 CCTGCACTGCATGTAAGACAAG 59.839 50.000 3.64 0.00 38.13 3.16
34 35 2.810274 CTGCACTGCATGTAAGACAAGT 59.190 45.455 3.64 0.00 38.13 3.16
35 36 3.996363 CTGCACTGCATGTAAGACAAGTA 59.004 43.478 3.64 0.00 38.13 2.24
36 37 3.996363 TGCACTGCATGTAAGACAAGTAG 59.004 43.478 0.00 0.00 36.00 2.57
37 38 4.245660 GCACTGCATGTAAGACAAGTAGA 58.754 43.478 6.89 0.00 34.09 2.59
38 39 4.690748 GCACTGCATGTAAGACAAGTAGAA 59.309 41.667 6.89 0.00 34.09 2.10
39 40 5.179368 GCACTGCATGTAAGACAAGTAGAAA 59.821 40.000 6.89 0.00 34.09 2.52
40 41 6.293407 GCACTGCATGTAAGACAAGTAGAAAA 60.293 38.462 6.89 0.00 34.09 2.29
41 42 7.072030 CACTGCATGTAAGACAAGTAGAAAAC 58.928 38.462 6.89 0.00 34.09 2.43
42 43 6.204882 ACTGCATGTAAGACAAGTAGAAAACC 59.795 38.462 6.89 0.00 34.09 3.27
43 44 5.472137 TGCATGTAAGACAAGTAGAAAACCC 59.528 40.000 0.00 0.00 0.00 4.11
44 45 5.106277 GCATGTAAGACAAGTAGAAAACCCC 60.106 44.000 0.00 0.00 0.00 4.95
45 46 4.634199 TGTAAGACAAGTAGAAAACCCCG 58.366 43.478 0.00 0.00 0.00 5.73
46 47 3.851458 AAGACAAGTAGAAAACCCCGT 57.149 42.857 0.00 0.00 0.00 5.28
47 48 3.121738 AGACAAGTAGAAAACCCCGTG 57.878 47.619 0.00 0.00 0.00 4.94
48 49 2.701951 AGACAAGTAGAAAACCCCGTGA 59.298 45.455 0.00 0.00 0.00 4.35
49 50 3.064931 GACAAGTAGAAAACCCCGTGAG 58.935 50.000 0.00 0.00 0.00 3.51
72 73 6.835819 GGCCTAACCTGTTTTTAGAAATCT 57.164 37.500 0.00 0.00 34.51 2.40
73 74 7.228314 GGCCTAACCTGTTTTTAGAAATCTT 57.772 36.000 0.00 0.00 34.51 2.40
74 75 8.344446 GGCCTAACCTGTTTTTAGAAATCTTA 57.656 34.615 0.00 0.00 34.51 2.10
75 76 8.799367 GGCCTAACCTGTTTTTAGAAATCTTAA 58.201 33.333 0.00 0.00 34.51 1.85
76 77 9.622004 GCCTAACCTGTTTTTAGAAATCTTAAC 57.378 33.333 0.00 0.00 0.00 2.01
77 78 9.821662 CCTAACCTGTTTTTAGAAATCTTAACG 57.178 33.333 0.00 0.00 0.00 3.18
88 89 8.786826 TTAGAAATCTTAACGAATCATGGTGT 57.213 30.769 0.00 0.00 0.00 4.16
89 90 9.878667 TTAGAAATCTTAACGAATCATGGTGTA 57.121 29.630 0.00 0.00 0.00 2.90
90 91 8.425577 AGAAATCTTAACGAATCATGGTGTAG 57.574 34.615 0.00 0.00 0.00 2.74
91 92 7.495934 AGAAATCTTAACGAATCATGGTGTAGG 59.504 37.037 0.00 0.00 0.00 3.18
92 93 5.925506 TCTTAACGAATCATGGTGTAGGA 57.074 39.130 0.00 0.00 0.00 2.94
93 94 6.288941 TCTTAACGAATCATGGTGTAGGAA 57.711 37.500 0.00 0.00 0.00 3.36
94 95 6.884832 TCTTAACGAATCATGGTGTAGGAAT 58.115 36.000 0.00 0.00 0.00 3.01
95 96 6.761242 TCTTAACGAATCATGGTGTAGGAATG 59.239 38.462 0.00 0.00 0.00 2.67
96 97 3.206150 ACGAATCATGGTGTAGGAATGC 58.794 45.455 0.00 0.00 0.00 3.56
97 98 3.205338 CGAATCATGGTGTAGGAATGCA 58.795 45.455 0.00 0.00 0.00 3.96
98 99 3.627123 CGAATCATGGTGTAGGAATGCAA 59.373 43.478 0.00 0.00 0.00 4.08
99 100 4.096231 CGAATCATGGTGTAGGAATGCAAA 59.904 41.667 0.00 0.00 0.00 3.68
100 101 4.989279 ATCATGGTGTAGGAATGCAAAC 57.011 40.909 0.00 0.00 0.00 2.93
101 102 3.088532 TCATGGTGTAGGAATGCAAACC 58.911 45.455 0.00 0.00 0.00 3.27
102 103 2.666272 TGGTGTAGGAATGCAAACCA 57.334 45.000 13.62 6.18 35.39 3.67
103 104 3.168035 TGGTGTAGGAATGCAAACCAT 57.832 42.857 13.62 3.53 32.88 3.55
104 105 4.308526 TGGTGTAGGAATGCAAACCATA 57.691 40.909 13.62 2.76 32.88 2.74
105 106 4.269183 TGGTGTAGGAATGCAAACCATAG 58.731 43.478 13.62 0.00 32.88 2.23
106 107 4.018870 TGGTGTAGGAATGCAAACCATAGA 60.019 41.667 13.62 1.80 32.88 1.98
107 108 4.576463 GGTGTAGGAATGCAAACCATAGAG 59.424 45.833 13.62 0.00 32.67 2.43
108 109 5.428253 GTGTAGGAATGCAAACCATAGAGA 58.572 41.667 13.62 0.00 32.67 3.10
109 110 5.880332 GTGTAGGAATGCAAACCATAGAGAA 59.120 40.000 13.62 0.00 32.67 2.87
110 111 6.543831 GTGTAGGAATGCAAACCATAGAGAAT 59.456 38.462 13.62 0.00 32.67 2.40
111 112 7.067494 GTGTAGGAATGCAAACCATAGAGAATT 59.933 37.037 13.62 0.00 32.67 2.17
112 113 6.461110 AGGAATGCAAACCATAGAGAATTG 57.539 37.500 13.62 0.00 32.67 2.32
113 114 5.045872 GGAATGCAAACCATAGAGAATTGC 58.954 41.667 7.52 2.07 44.93 3.56
117 118 4.365723 GCAAACCATAGAGAATTGCATGG 58.634 43.478 4.10 0.00 44.29 3.66
123 124 6.174451 CCATAGAGAATTGCATGGTATTCG 57.826 41.667 0.00 0.00 36.21 3.34
124 125 5.702670 CCATAGAGAATTGCATGGTATTCGT 59.297 40.000 0.00 0.00 36.21 3.85
125 126 6.205464 CCATAGAGAATTGCATGGTATTCGTT 59.795 38.462 0.00 0.30 36.21 3.85
126 127 5.741388 AGAGAATTGCATGGTATTCGTTC 57.259 39.130 0.00 0.00 36.21 3.95
127 128 4.271049 AGAGAATTGCATGGTATTCGTTCG 59.729 41.667 0.00 0.00 36.21 3.95
128 129 4.188462 AGAATTGCATGGTATTCGTTCGA 58.812 39.130 0.00 0.00 36.21 3.71
129 130 3.944422 ATTGCATGGTATTCGTTCGAC 57.056 42.857 0.00 0.00 0.00 4.20
130 131 2.665649 TGCATGGTATTCGTTCGACT 57.334 45.000 0.00 0.00 0.00 4.18
131 132 2.967362 TGCATGGTATTCGTTCGACTT 58.033 42.857 0.00 0.00 0.00 3.01
132 133 3.331150 TGCATGGTATTCGTTCGACTTT 58.669 40.909 0.00 0.00 0.00 2.66
133 134 3.369756 TGCATGGTATTCGTTCGACTTTC 59.630 43.478 0.00 0.00 0.00 2.62
134 135 3.242316 GCATGGTATTCGTTCGACTTTCC 60.242 47.826 0.00 0.00 0.00 3.13
135 136 2.963432 TGGTATTCGTTCGACTTTCCC 58.037 47.619 0.00 0.00 0.00 3.97
136 137 2.274437 GGTATTCGTTCGACTTTCCCC 58.726 52.381 0.00 0.00 0.00 4.81
137 138 2.354003 GGTATTCGTTCGACTTTCCCCA 60.354 50.000 0.00 0.00 0.00 4.96
138 139 2.554370 ATTCGTTCGACTTTCCCCAA 57.446 45.000 0.00 0.00 0.00 4.12
139 140 2.554370 TTCGTTCGACTTTCCCCAAT 57.446 45.000 0.00 0.00 0.00 3.16
140 141 3.681593 TTCGTTCGACTTTCCCCAATA 57.318 42.857 0.00 0.00 0.00 1.90
141 142 3.681593 TCGTTCGACTTTCCCCAATAA 57.318 42.857 0.00 0.00 0.00 1.40
142 143 4.005487 TCGTTCGACTTTCCCCAATAAA 57.995 40.909 0.00 0.00 0.00 1.40
143 144 4.581868 TCGTTCGACTTTCCCCAATAAAT 58.418 39.130 0.00 0.00 0.00 1.40
144 145 5.732633 TCGTTCGACTTTCCCCAATAAATA 58.267 37.500 0.00 0.00 0.00 1.40
145 146 6.171921 TCGTTCGACTTTCCCCAATAAATAA 58.828 36.000 0.00 0.00 0.00 1.40
146 147 6.654161 TCGTTCGACTTTCCCCAATAAATAAA 59.346 34.615 0.00 0.00 0.00 1.40
147 148 7.337436 TCGTTCGACTTTCCCCAATAAATAAAT 59.663 33.333 0.00 0.00 0.00 1.40
148 149 7.642586 CGTTCGACTTTCCCCAATAAATAAATC 59.357 37.037 0.00 0.00 0.00 2.17
149 150 7.576861 TCGACTTTCCCCAATAAATAAATCC 57.423 36.000 0.00 0.00 0.00 3.01
150 151 7.351166 TCGACTTTCCCCAATAAATAAATCCT 58.649 34.615 0.00 0.00 0.00 3.24
151 152 7.837187 TCGACTTTCCCCAATAAATAAATCCTT 59.163 33.333 0.00 0.00 0.00 3.36
152 153 7.920682 CGACTTTCCCCAATAAATAAATCCTTG 59.079 37.037 0.00 0.00 0.00 3.61
153 154 8.909423 ACTTTCCCCAATAAATAAATCCTTGA 57.091 30.769 0.00 0.00 0.00 3.02
154 155 9.332713 ACTTTCCCCAATAAATAAATCCTTGAA 57.667 29.630 0.00 0.00 0.00 2.69
158 159 8.713036 TCCCCAATAAATAAATCCTTGAATTGG 58.287 33.333 0.00 0.00 41.04 3.16
159 160 8.493607 CCCCAATAAATAAATCCTTGAATTGGT 58.506 33.333 9.25 0.00 40.19 3.67
160 161 9.904198 CCCAATAAATAAATCCTTGAATTGGTT 57.096 29.630 9.25 0.00 40.19 3.67
195 196 9.981460 ATTACTTTAAATCCAAAGATCACCTCT 57.019 29.630 0.00 0.00 38.60 3.69
197 198 8.794335 ACTTTAAATCCAAAGATCACCTCTAC 57.206 34.615 0.00 0.00 38.60 2.59
198 199 8.383175 ACTTTAAATCCAAAGATCACCTCTACA 58.617 33.333 0.00 0.00 38.60 2.74
199 200 9.231297 CTTTAAATCCAAAGATCACCTCTACAA 57.769 33.333 0.00 0.00 37.66 2.41
200 201 9.753674 TTTAAATCCAAAGATCACCTCTACAAT 57.246 29.630 0.00 0.00 32.41 2.71
201 202 7.636150 AAATCCAAAGATCACCTCTACAATG 57.364 36.000 0.00 0.00 32.41 2.82
202 203 6.566079 ATCCAAAGATCACCTCTACAATGA 57.434 37.500 0.00 0.00 32.41 2.57
203 204 6.373005 TCCAAAGATCACCTCTACAATGAA 57.627 37.500 0.00 0.00 32.41 2.57
204 205 6.778821 TCCAAAGATCACCTCTACAATGAAA 58.221 36.000 0.00 0.00 32.41 2.69
205 206 7.230747 TCCAAAGATCACCTCTACAATGAAAA 58.769 34.615 0.00 0.00 32.41 2.29
206 207 7.723616 TCCAAAGATCACCTCTACAATGAAAAA 59.276 33.333 0.00 0.00 32.41 1.94
284 290 5.624159 AGATGGAGATGAAAAGTGTGTCAA 58.376 37.500 0.00 0.00 0.00 3.18
295 301 5.568620 AAAGTGTGTCAACCTTAGGAGAT 57.431 39.130 4.77 0.00 0.00 2.75
301 307 4.223032 GTGTCAACCTTAGGAGATCCTCAA 59.777 45.833 4.77 0.00 44.77 3.02
309 315 0.744771 GGAGATCCTCAACCGTTGGC 60.745 60.000 11.35 0.00 31.08 4.52
355 361 2.224426 ACCACCGTGATAACTTCTGCAA 60.224 45.455 0.00 0.00 0.00 4.08
365 371 5.945784 TGATAACTTCTGCAAAGCACCTTAT 59.054 36.000 8.09 5.70 33.79 1.73
408 414 3.504520 GGGTAAGAATTTCCGTCAAAGCA 59.495 43.478 0.00 0.00 36.23 3.91
880 887 2.665603 GCGGCTTCCTTGGTCTCT 59.334 61.111 0.00 0.00 0.00 3.10
884 891 0.321996 GGCTTCCTTGGTCTCTCGTT 59.678 55.000 0.00 0.00 0.00 3.85
897 909 3.440872 GTCTCTCGTTCTCTCTTGGCTTA 59.559 47.826 0.00 0.00 0.00 3.09
899 911 4.156922 TCTCTCGTTCTCTCTTGGCTTAAG 59.843 45.833 0.00 0.00 37.76 1.85
925 937 1.215647 GGTGGATTGACGCGTCTCT 59.784 57.895 36.27 24.49 0.00 3.10
1017 1030 4.214266 ATGGCAGGCATGGGCGAT 62.214 61.111 9.06 0.00 42.47 4.58
1142 1165 2.743126 CCGCAACCCTAACGATTTTACA 59.257 45.455 0.00 0.00 0.00 2.41
1163 1186 6.465439 ACATGTTATACTAGCTAGTGTGCA 57.535 37.500 32.21 26.29 37.10 4.57
1179 1205 6.137794 AGTGTGCAGACATATACTAGTGTC 57.862 41.667 17.22 4.32 43.85 3.67
1182 1208 5.163550 TGTGCAGACATATACTAGTGTCCAC 60.164 44.000 5.39 9.08 44.43 4.02
1188 1214 6.015856 AGACATATACTAGTGTCCACATCAGC 60.016 42.308 5.39 0.00 44.43 4.26
1191 1217 1.066573 ACTAGTGTCCACATCAGCAGC 60.067 52.381 0.00 0.00 0.00 5.25
1192 1218 0.108662 TAGTGTCCACATCAGCAGCG 60.109 55.000 0.00 0.00 0.00 5.18
1193 1219 2.743538 TGTCCACATCAGCAGCGC 60.744 61.111 0.00 0.00 0.00 5.92
1194 1220 2.435586 GTCCACATCAGCAGCGCT 60.436 61.111 2.64 2.64 40.77 5.92
1195 1221 1.153568 GTCCACATCAGCAGCGCTA 60.154 57.895 10.99 0.00 36.40 4.26
1196 1222 0.531532 GTCCACATCAGCAGCGCTAT 60.532 55.000 10.99 0.00 36.40 2.97
1198 1224 0.585357 CCACATCAGCAGCGCTATTC 59.415 55.000 10.99 1.89 36.40 1.75
1201 1227 3.126073 CACATCAGCAGCGCTATTCTTA 58.874 45.455 10.99 0.00 36.40 2.10
1202 1228 3.183976 CACATCAGCAGCGCTATTCTTAG 59.816 47.826 10.99 0.00 36.40 2.18
1203 1229 3.181471 ACATCAGCAGCGCTATTCTTAGT 60.181 43.478 10.99 0.55 36.40 2.24
1204 1230 4.038042 ACATCAGCAGCGCTATTCTTAGTA 59.962 41.667 10.99 0.00 36.40 1.82
1205 1231 4.230314 TCAGCAGCGCTATTCTTAGTAG 57.770 45.455 10.99 0.00 36.40 2.57
1206 1232 3.004839 TCAGCAGCGCTATTCTTAGTAGG 59.995 47.826 10.99 0.00 36.40 3.18
1207 1233 2.959707 AGCAGCGCTATTCTTAGTAGGT 59.040 45.455 10.99 0.00 36.99 3.08
1221 1250 7.069877 TCTTAGTAGGTTTGCTAGGTTTTGA 57.930 36.000 0.00 0.00 0.00 2.69
1223 1252 7.994334 TCTTAGTAGGTTTGCTAGGTTTTGAAA 59.006 33.333 0.00 0.00 0.00 2.69
1349 1384 9.765795 CTTCTACTCTTTCTTGTTCCTTTTAGA 57.234 33.333 0.00 0.00 0.00 2.10
1350 1385 9.543783 TTCTACTCTTTCTTGTTCCTTTTAGAC 57.456 33.333 0.00 0.00 0.00 2.59
1351 1386 8.925338 TCTACTCTTTCTTGTTCCTTTTAGACT 58.075 33.333 0.00 0.00 0.00 3.24
1352 1387 9.549078 CTACTCTTTCTTGTTCCTTTTAGACTT 57.451 33.333 0.00 0.00 0.00 3.01
1353 1388 8.809468 ACTCTTTCTTGTTCCTTTTAGACTTT 57.191 30.769 0.00 0.00 0.00 2.66
1360 1395 7.554835 TCTTGTTCCTTTTAGACTTTTAGTGCA 59.445 33.333 0.00 0.00 0.00 4.57
1362 1397 6.038936 TGTTCCTTTTAGACTTTTAGTGCACC 59.961 38.462 14.63 0.00 0.00 5.01
1363 1398 5.937111 TCCTTTTAGACTTTTAGTGCACCT 58.063 37.500 14.63 3.86 0.00 4.00
1364 1399 7.069877 TCCTTTTAGACTTTTAGTGCACCTA 57.930 36.000 14.63 2.78 0.00 3.08
1365 1400 6.932960 TCCTTTTAGACTTTTAGTGCACCTAC 59.067 38.462 14.63 0.00 0.00 3.18
1396 1431 4.687901 TGATATCCTCAATTCGCTTGGA 57.312 40.909 0.00 0.00 35.43 3.53
1398 1433 5.240891 TGATATCCTCAATTCGCTTGGATC 58.759 41.667 0.00 0.00 38.36 3.36
1441 1476 3.055719 GTGCATGGGTGGTCGGTG 61.056 66.667 0.00 0.00 0.00 4.94
1443 1478 4.344865 GCATGGGTGGTCGGTGGT 62.345 66.667 0.00 0.00 0.00 4.16
1466 1501 6.035758 GGTGAAGTAATCTGAAACGTATGGTC 59.964 42.308 0.00 0.00 0.00 4.02
1469 1504 5.661458 AGTAATCTGAAACGTATGGTCCTG 58.339 41.667 0.00 0.00 0.00 3.86
1485 1520 3.462021 GTCCTGTCTGAATGATGCTACC 58.538 50.000 0.00 0.00 0.00 3.18
1492 1527 5.048782 TGTCTGAATGATGCTACCAAAACAC 60.049 40.000 0.00 0.00 0.00 3.32
1495 1530 4.083537 TGAATGATGCTACCAAAACACGAC 60.084 41.667 0.00 0.00 0.00 4.34
1552 1587 4.965200 AGGATGTATAAGCTCTGTTCCC 57.035 45.455 0.00 0.00 0.00 3.97
1572 1607 1.136891 CGGATGGTGCTGTGTAGATCA 59.863 52.381 0.00 0.00 0.00 2.92
1578 1613 1.656095 GTGCTGTGTAGATCAGTTCGC 59.344 52.381 0.00 0.00 35.60 4.70
1611 1646 2.478134 CTGTAGTTGAGCAGCACTTGAC 59.522 50.000 0.00 0.00 0.00 3.18
1616 1651 1.632589 TGAGCAGCACTTGACTAGGA 58.367 50.000 0.00 0.00 0.00 2.94
1618 1653 0.901124 AGCAGCACTTGACTAGGAGG 59.099 55.000 0.00 0.00 0.00 4.30
1620 1655 1.674221 GCAGCACTTGACTAGGAGGTG 60.674 57.143 0.00 0.00 35.74 4.00
1621 1656 1.620819 CAGCACTTGACTAGGAGGTGT 59.379 52.381 7.74 0.00 31.18 4.16
1622 1657 2.037772 CAGCACTTGACTAGGAGGTGTT 59.962 50.000 7.74 0.60 31.18 3.32
1649 1700 2.430694 AGCATGACTCGGTAATACAGCA 59.569 45.455 0.00 0.00 0.00 4.41
1666 1717 2.490903 CAGCAGAGGATCCCAAAACTTG 59.509 50.000 8.55 0.00 33.66 3.16
1710 1765 8.644374 TGTTTGATAGGCCTTACAGTTTTAAT 57.356 30.769 12.58 0.00 0.00 1.40
1861 1968 2.758089 GGCCATCAGCAGTTCAGCG 61.758 63.158 0.00 0.00 46.50 5.18
1886 1993 6.656693 GCTAACCTATTTATCATGGCTGACAT 59.343 38.462 0.00 0.00 41.57 3.06
1993 2105 4.202080 CCACATATGTTCATTGCTCAAGGG 60.202 45.833 5.37 0.00 0.00 3.95
2053 2165 3.370527 GGGAAGTACTTAGCTGCCAATGA 60.371 47.826 8.42 0.00 33.17 2.57
2085 2197 3.173953 TCTTTGGCTGGAACAATGGAT 57.826 42.857 0.00 0.00 38.70 3.41
2095 2547 5.521372 GCTGGAACAATGGATGCTATTTTTC 59.479 40.000 0.00 0.00 38.70 2.29
2121 2581 5.349817 GGAAGATGGATGCTATTCATGTACG 59.650 44.000 0.00 0.00 35.05 3.67
2131 2591 4.988540 GCTATTCATGTACGCACTGGATTA 59.011 41.667 0.00 0.00 0.00 1.75
2150 2610 7.976826 TGGATTATGCATTTTGATTTTCAAGC 58.023 30.769 3.54 0.00 37.70 4.01
2220 2689 7.244166 CATGTAGTGCTTAAGAAATCTGAGG 57.756 40.000 6.67 0.00 0.00 3.86
2263 2769 3.945285 GGGCGATCTGGAAAATAGACAAA 59.055 43.478 0.00 0.00 0.00 2.83
2377 2885 3.309954 GTCATACGGAAAACTGATCCTGC 59.690 47.826 0.00 0.00 34.66 4.85
2384 2893 5.123979 ACGGAAAACTGATCCTGCTTATTTC 59.876 40.000 0.00 0.00 34.66 2.17
2463 2972 8.358582 AGCCAAAAGATGAAGTTCAGATTTAT 57.641 30.769 11.91 0.00 0.00 1.40
2647 3176 6.772233 TCACATCCCATGTCATAAAATACCAG 59.228 38.462 0.00 0.00 42.70 4.00
2650 3179 6.320434 TCCCATGTCATAAAATACCAGTGA 57.680 37.500 0.00 0.00 0.00 3.41
2662 3191 0.179073 ACCAGTGAGTGTGTGACAGC 60.179 55.000 0.00 0.00 0.00 4.40
2829 3358 5.124776 TGTTGTCAAACAGGTAAGTTCTTGG 59.875 40.000 0.00 0.00 41.41 3.61
2848 3377 6.218019 TCTTGGCTGATTTGTTTCTTCAATG 58.782 36.000 0.00 0.00 0.00 2.82
2983 3672 3.039011 GAGCACCCTGTCCTAAATCCTA 58.961 50.000 0.00 0.00 0.00 2.94
2984 3673 3.454812 GAGCACCCTGTCCTAAATCCTAA 59.545 47.826 0.00 0.00 0.00 2.69
2985 3674 3.850173 AGCACCCTGTCCTAAATCCTAAA 59.150 43.478 0.00 0.00 0.00 1.85
2986 3675 4.478686 AGCACCCTGTCCTAAATCCTAAAT 59.521 41.667 0.00 0.00 0.00 1.40
2987 3676 4.822350 GCACCCTGTCCTAAATCCTAAATC 59.178 45.833 0.00 0.00 0.00 2.17
2988 3677 5.377478 CACCCTGTCCTAAATCCTAAATCC 58.623 45.833 0.00 0.00 0.00 3.01
2989 3678 5.132816 CACCCTGTCCTAAATCCTAAATCCT 59.867 44.000 0.00 0.00 0.00 3.24
3026 3715 6.069440 ACCTCATTCACTCCTTTATGGATGAA 60.069 38.462 11.31 11.31 45.16 2.57
3061 3750 7.229581 AGTTCTACTTTCAGGAACGAGTTAT 57.770 36.000 0.00 0.00 42.60 1.89
3064 3753 9.583765 GTTCTACTTTCAGGAACGAGTTATATT 57.416 33.333 0.00 0.00 31.76 1.28
3065 3754 9.582431 TTCTACTTTCAGGAACGAGTTATATTG 57.418 33.333 0.00 0.00 0.00 1.90
3117 3806 5.011635 TGGTTCTCACTACTGTTTATGAGCA 59.988 40.000 9.52 0.00 38.77 4.26
3118 3807 6.109359 GGTTCTCACTACTGTTTATGAGCAT 58.891 40.000 9.52 0.00 38.77 3.79
3231 3922 2.254051 GCAGCTTGCGCCGTTTTA 59.746 55.556 4.18 0.00 36.60 1.52
3246 3937 6.183360 GCGCCGTTTTACAATTATGTTTCAAT 60.183 34.615 0.00 0.00 41.05 2.57
3265 3958 4.578516 TCAATTATGCGTTCAATACTGGGG 59.421 41.667 0.00 0.00 0.00 4.96
3274 3967 4.938832 CGTTCAATACTGGGGAACAACATA 59.061 41.667 0.00 0.00 40.62 2.29
3275 3968 5.588648 CGTTCAATACTGGGGAACAACATAT 59.411 40.000 0.00 0.00 40.62 1.78
3326 4019 5.483937 TGTTCCAGACAGTATGGTAATCACT 59.516 40.000 14.06 0.00 43.62 3.41
3346 4039 6.103997 TCACTAGTTCCATACCGAAATTGAC 58.896 40.000 0.00 0.00 0.00 3.18
3354 4047 5.007234 TCCATACCGAAATTGACGCTTATTG 59.993 40.000 0.00 0.00 0.00 1.90
3369 4062 3.879295 GCTTATTGCTAGTCCATTGAGCA 59.121 43.478 0.00 0.00 44.25 4.26
3371 4064 5.334724 GCTTATTGCTAGTCCATTGAGCATC 60.335 44.000 0.00 0.00 45.20 3.91
3424 4215 8.650143 AATTTCCATTGTACAACCTATGTTCT 57.350 30.769 11.22 0.00 43.63 3.01
3578 4370 2.880890 GGCTTCCAGGTATGCATAAGTG 59.119 50.000 8.28 8.65 0.00 3.16
3595 4387 7.606858 CATAAGTGCTGTATTATGCTAGCAT 57.393 36.000 31.60 31.60 46.48 3.79
3596 4388 8.037382 CATAAGTGCTGTATTATGCTAGCATT 57.963 34.615 33.74 20.07 46.48 3.56
3599 4391 6.057533 AGTGCTGTATTATGCTAGCATTTCA 58.942 36.000 33.74 23.28 46.48 2.69
3602 4394 7.536622 GTGCTGTATTATGCTAGCATTTCATTC 59.463 37.037 33.74 20.02 46.48 2.67
3603 4395 7.025963 GCTGTATTATGCTAGCATTTCATTCC 58.974 38.462 33.74 15.97 37.82 3.01
3604 4396 7.132694 TGTATTATGCTAGCATTTCATTCCG 57.867 36.000 33.74 0.00 37.82 4.30
3608 4400 4.782019 TGCTAGCATTTCATTCCGTTTT 57.218 36.364 14.93 0.00 0.00 2.43
3609 4401 4.732784 TGCTAGCATTTCATTCCGTTTTC 58.267 39.130 14.93 0.00 0.00 2.29
3612 4404 5.863935 GCTAGCATTTCATTCCGTTTTCTTT 59.136 36.000 10.63 0.00 0.00 2.52
3617 4409 6.019156 GCATTTCATTCCGTTTTCTTTGTTGA 60.019 34.615 0.00 0.00 0.00 3.18
3621 4413 5.124776 TCATTCCGTTTTCTTTGTTGACACT 59.875 36.000 0.00 0.00 0.00 3.55
3623 4415 4.728534 TCCGTTTTCTTTGTTGACACTTG 58.271 39.130 0.00 0.00 0.00 3.16
3626 4418 6.072618 TCCGTTTTCTTTGTTGACACTTGTTA 60.073 34.615 0.00 0.00 0.00 2.41
3629 4421 8.643752 CGTTTTCTTTGTTGACACTTGTTATTT 58.356 29.630 0.00 0.00 0.00 1.40
3711 4506 4.171005 CTGTGCCATCTTGCAAAATAGTG 58.829 43.478 0.00 0.00 44.11 2.74
3712 4507 3.573538 TGTGCCATCTTGCAAAATAGTGT 59.426 39.130 0.00 0.00 44.11 3.55
3749 4546 3.142404 GCAGAATAGTTTTCCTGCTGC 57.858 47.619 0.00 0.00 46.04 5.25
3753 4550 2.691409 ATAGTTTTCCTGCTGCGCTA 57.309 45.000 9.73 0.00 0.00 4.26
3754 4551 2.691409 TAGTTTTCCTGCTGCGCTAT 57.309 45.000 9.73 0.00 0.00 2.97
3755 4552 1.826385 AGTTTTCCTGCTGCGCTATT 58.174 45.000 9.73 0.00 0.00 1.73
3776 4573 2.455674 TTATCTTGAGCTGTGCGTGT 57.544 45.000 0.00 0.00 0.00 4.49
3807 4604 0.741915 CTCTCCTTAGTGGTCGCCTC 59.258 60.000 0.00 0.00 37.07 4.70
3877 4678 8.082852 TGAACTAGTATTTGAGACTTGACACTC 58.917 37.037 0.00 0.00 0.00 3.51
3881 4683 6.686630 AGTATTTGAGACTTGACACTCAGAG 58.313 40.000 0.00 0.00 42.72 3.35
3985 4797 6.205464 CCAGCAGAACATATGTAAACATAGGG 59.795 42.308 9.21 10.08 42.85 3.53
4030 4842 7.920682 GGCTGAATTTACCAAATAAATGACGAT 59.079 33.333 0.00 0.00 41.73 3.73
4091 4908 7.535258 CAGTAACATCTGATGCAACTAAACAAC 59.465 37.037 17.24 2.10 37.61 3.32
4103 4920 6.701841 TGCAACTAAACAACAAAACTTGTGAA 59.298 30.769 0.00 0.00 44.59 3.18
4127 4944 5.352643 TCAGATAATGAGCATTGCAATCG 57.647 39.130 9.53 6.73 32.77 3.34
4142 4962 6.912203 TTGCAATCGAATTTCGTAGGATTA 57.088 33.333 17.61 0.00 41.35 1.75
4146 4966 6.792250 GCAATCGAATTTCGTAGGATTATGTG 59.208 38.462 17.61 2.10 41.35 3.21
4166 4986 3.055094 GTGAACTCCCATTTCTGCCTAGA 60.055 47.826 0.00 0.00 0.00 2.43
4203 5137 5.726980 ATCTTGGCAATGAAAGCAAGTTA 57.273 34.783 0.00 0.00 0.00 2.24
4210 5144 1.234821 TGAAAGCAAGTTACCAGGCG 58.765 50.000 0.00 0.00 0.00 5.52
4255 5193 7.851822 ATATAAACTCGTGTTTTGCAACAAG 57.148 32.000 19.47 0.00 44.72 3.16
4278 5223 3.292492 AAAAAGGACCTGGTTTCGTCT 57.708 42.857 0.00 0.00 0.00 4.18
4279 5224 3.292492 AAAAGGACCTGGTTTCGTCTT 57.708 42.857 0.00 0.00 0.00 3.01
4280 5225 3.292492 AAAGGACCTGGTTTCGTCTTT 57.708 42.857 0.00 4.34 30.39 2.52
4281 5226 2.256117 AGGACCTGGTTTCGTCTTTG 57.744 50.000 0.00 0.00 0.00 2.77
4282 5227 1.766496 AGGACCTGGTTTCGTCTTTGA 59.234 47.619 0.00 0.00 0.00 2.69
4283 5228 2.143925 GGACCTGGTTTCGTCTTTGAG 58.856 52.381 0.00 0.00 0.00 3.02
4284 5229 2.224209 GGACCTGGTTTCGTCTTTGAGA 60.224 50.000 0.00 0.00 0.00 3.27
4286 5231 3.665190 ACCTGGTTTCGTCTTTGAGATC 58.335 45.455 0.00 0.00 0.00 2.75
4299 5245 4.286808 TCTTTGAGATCCCTGTTGATGTCA 59.713 41.667 0.00 0.00 41.63 3.58
4302 5248 5.955961 TGAGATCCCTGTTGATGTCATAA 57.044 39.130 0.00 0.00 39.35 1.90
4313 5259 3.669536 TGATGTCATAACGAACAAGGCA 58.330 40.909 0.00 0.00 0.00 4.75
4337 5283 1.863662 CTTCAGCCTGCCTTGCACAG 61.864 60.000 0.00 0.00 33.79 3.66
4338 5284 2.596631 CAGCCTGCCTTGCACAGT 60.597 61.111 2.52 0.00 33.79 3.55
4345 5291 2.109126 GCCTTGCACAGTCGGATCC 61.109 63.158 0.00 0.00 0.00 3.36
4348 5294 0.460987 CTTGCACAGTCGGATCCTCC 60.461 60.000 10.75 0.00 0.00 4.30
4410 5358 3.844211 TCCATGTTTAGCTCCCTAACTGT 59.156 43.478 0.00 0.00 33.43 3.55
4412 5360 5.665812 TCCATGTTTAGCTCCCTAACTGTAT 59.334 40.000 0.00 0.00 33.43 2.29
4437 5385 1.079127 AATCTCGCAACGACAGGGG 60.079 57.895 0.00 0.00 0.00 4.79
4438 5386 1.827399 AATCTCGCAACGACAGGGGT 61.827 55.000 0.00 0.00 0.00 4.95
4439 5387 0.968901 ATCTCGCAACGACAGGGGTA 60.969 55.000 0.00 0.00 0.00 3.69
4440 5388 1.445582 CTCGCAACGACAGGGGTAC 60.446 63.158 0.00 0.00 0.00 3.34
4441 5389 1.874345 CTCGCAACGACAGGGGTACT 61.874 60.000 0.00 0.00 0.00 2.73
4442 5390 1.005394 CGCAACGACAGGGGTACTT 60.005 57.895 0.00 0.00 0.00 2.24
4443 5391 0.601841 CGCAACGACAGGGGTACTTT 60.602 55.000 0.00 0.00 0.00 2.66
4444 5392 1.154197 GCAACGACAGGGGTACTTTC 58.846 55.000 0.00 0.00 0.00 2.62
4445 5393 1.804601 CAACGACAGGGGTACTTTCC 58.195 55.000 0.00 0.00 0.00 3.13
4446 5394 0.319405 AACGACAGGGGTACTTTCCG 59.681 55.000 0.00 0.00 0.00 4.30
4447 5395 1.447314 CGACAGGGGTACTTTCCGC 60.447 63.158 0.00 0.00 40.15 5.54
4448 5396 1.675219 GACAGGGGTACTTTCCGCA 59.325 57.895 0.00 0.00 41.92 5.69
4449 5397 0.035739 GACAGGGGTACTTTCCGCAA 59.964 55.000 0.00 0.00 41.92 4.85
4450 5398 0.036306 ACAGGGGTACTTTCCGCAAG 59.964 55.000 0.00 0.00 41.92 4.01
4451 5399 0.323629 CAGGGGTACTTTCCGCAAGA 59.676 55.000 0.00 0.00 41.92 3.02
4452 5400 1.065418 CAGGGGTACTTTCCGCAAGAT 60.065 52.381 0.00 0.00 41.92 2.40
4453 5401 2.169769 CAGGGGTACTTTCCGCAAGATA 59.830 50.000 0.00 0.00 41.92 1.98
4454 5402 2.169978 AGGGGTACTTTCCGCAAGATAC 59.830 50.000 0.00 0.38 41.92 2.24
4455 5403 2.093341 GGGGTACTTTCCGCAAGATACA 60.093 50.000 0.00 0.00 39.71 2.29
4456 5404 3.602483 GGGTACTTTCCGCAAGATACAA 58.398 45.455 0.00 0.00 43.02 2.41
4457 5405 4.004982 GGGTACTTTCCGCAAGATACAAA 58.995 43.478 0.00 0.00 43.02 2.83
4458 5406 4.094442 GGGTACTTTCCGCAAGATACAAAG 59.906 45.833 0.00 0.00 43.02 2.77
4459 5407 4.933400 GGTACTTTCCGCAAGATACAAAGA 59.067 41.667 0.00 0.00 43.02 2.52
4460 5408 5.063564 GGTACTTTCCGCAAGATACAAAGAG 59.936 44.000 0.00 0.00 43.02 2.85
4461 5409 4.894784 ACTTTCCGCAAGATACAAAGAGA 58.105 39.130 0.00 0.00 43.02 3.10
4462 5410 4.932200 ACTTTCCGCAAGATACAAAGAGAG 59.068 41.667 0.00 0.00 43.02 3.20
4463 5411 2.893637 TCCGCAAGATACAAAGAGAGC 58.106 47.619 0.00 0.00 43.02 4.09
4464 5412 1.936547 CCGCAAGATACAAAGAGAGCC 59.063 52.381 0.00 0.00 43.02 4.70
4465 5413 2.621338 CGCAAGATACAAAGAGAGCCA 58.379 47.619 0.00 0.00 43.02 4.75
4466 5414 3.201290 CGCAAGATACAAAGAGAGCCAT 58.799 45.455 0.00 0.00 43.02 4.40
4467 5415 3.002042 CGCAAGATACAAAGAGAGCCATG 59.998 47.826 0.00 0.00 43.02 3.66
4468 5416 3.314635 GCAAGATACAAAGAGAGCCATGG 59.685 47.826 7.63 7.63 0.00 3.66
4478 5426 1.767681 GAGAGCCATGGATGAGGACTT 59.232 52.381 18.40 0.00 0.00 3.01
4497 5445 1.371389 GCACACTGCAAAGAGCTGC 60.371 57.895 0.00 0.00 44.26 5.25
4498 5446 1.082300 CACACTGCAAAGAGCTGCG 60.082 57.895 0.00 0.00 45.74 5.18
4499 5447 1.524621 ACACTGCAAAGAGCTGCGT 60.525 52.632 0.00 0.00 45.74 5.24
4507 5476 2.095768 GCAAAGAGCTGCGTACATTTCA 60.096 45.455 0.00 0.00 41.15 2.69
4510 5479 1.667724 AGAGCTGCGTACATTTCATGC 59.332 47.619 0.00 0.00 0.00 4.06
4530 5499 2.165167 CCAAATGTGTCTGACAGCCAT 58.835 47.619 11.41 9.27 38.23 4.40
4534 5503 2.472695 TGTGTCTGACAGCCATTACC 57.527 50.000 11.41 0.00 0.00 2.85
4537 5506 2.094390 GTGTCTGACAGCCATTACCGTA 60.094 50.000 11.41 0.00 0.00 4.02
4544 5513 3.332034 ACAGCCATTACCGTAAACTCAC 58.668 45.455 0.00 0.00 0.00 3.51
4546 5515 2.303600 AGCCATTACCGTAAACTCACCA 59.696 45.455 0.00 0.00 0.00 4.17
4549 5518 4.320870 CCATTACCGTAAACTCACCAAGT 58.679 43.478 0.00 0.00 41.10 3.16
4580 5549 3.195396 GCTCATATGGACCTTTTGCCAAA 59.805 43.478 2.13 0.00 37.78 3.28
4581 5550 4.141869 GCTCATATGGACCTTTTGCCAAAT 60.142 41.667 2.13 0.00 37.78 2.32
4582 5551 5.341872 TCATATGGACCTTTTGCCAAATG 57.658 39.130 2.13 0.00 37.78 2.32
4583 5552 2.477845 ATGGACCTTTTGCCAAATGC 57.522 45.000 0.00 0.00 37.78 3.56
4588 5557 2.412770 GACCTTTTGCCAAATGCGATTG 59.587 45.455 0.00 0.00 45.60 2.67
4598 5567 2.038387 AATGCGATTGTAGGGTGGAC 57.962 50.000 0.00 0.00 0.00 4.02
4600 5569 1.520787 GCGATTGTAGGGTGGACGG 60.521 63.158 0.00 0.00 0.00 4.79
4602 5571 0.179119 CGATTGTAGGGTGGACGGAC 60.179 60.000 0.00 0.00 0.00 4.79
4603 5572 0.899720 GATTGTAGGGTGGACGGACA 59.100 55.000 0.00 0.00 0.00 4.02
4604 5573 0.611714 ATTGTAGGGTGGACGGACAC 59.388 55.000 3.45 3.45 40.60 3.67
4613 5582 0.669318 TGGACGGACACGCTTTGATC 60.669 55.000 0.00 0.00 46.04 2.92
4619 5588 0.723981 GACACGCTTTGATCTCCAGC 59.276 55.000 0.00 0.00 0.00 4.85
4635 5604 0.795085 CAGCGAACCTGCTCTTCAAG 59.205 55.000 0.00 0.00 45.23 3.02
4640 5609 2.548920 CGAACCTGCTCTTCAAGGTCTT 60.549 50.000 0.00 0.00 32.84 3.01
4649 5618 4.622695 GCTCTTCAAGGTCTTCATAGCAGT 60.623 45.833 0.00 0.00 0.00 4.40
4685 5654 8.631797 TGTTTTCAATCACTTCATTTCATCTGA 58.368 29.630 0.00 0.00 0.00 3.27
4686 5655 9.467258 GTTTTCAATCACTTCATTTCATCTGAA 57.533 29.630 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.063180 TGCAGTGCAGGATTTAGAATTTG 57.937 39.130 15.37 0.00 33.32 2.32
1 2 5.186409 ACATGCAGTGCAGGATTTAGAATTT 59.814 36.000 34.24 6.57 43.36 1.82
2 3 4.708421 ACATGCAGTGCAGGATTTAGAATT 59.292 37.500 34.24 7.34 43.36 2.17
5 6 3.354948 ACATGCAGTGCAGGATTTAGA 57.645 42.857 34.24 2.24 43.36 2.10
6 7 4.877823 TCTTACATGCAGTGCAGGATTTAG 59.122 41.667 34.24 22.38 43.36 1.85
7 8 4.635765 GTCTTACATGCAGTGCAGGATTTA 59.364 41.667 34.24 14.94 43.36 1.40
8 9 3.441572 GTCTTACATGCAGTGCAGGATTT 59.558 43.478 34.24 15.99 43.36 2.17
9 10 3.012518 GTCTTACATGCAGTGCAGGATT 58.987 45.455 34.24 16.72 43.36 3.01
10 11 2.026915 TGTCTTACATGCAGTGCAGGAT 60.027 45.455 34.24 20.51 43.36 3.24
11 12 1.347378 TGTCTTACATGCAGTGCAGGA 59.653 47.619 34.24 15.35 43.36 3.86
12 13 1.812235 TGTCTTACATGCAGTGCAGG 58.188 50.000 27.03 27.03 46.22 4.85
13 14 2.810274 ACTTGTCTTACATGCAGTGCAG 59.190 45.455 24.20 16.97 43.65 4.41
14 15 2.849942 ACTTGTCTTACATGCAGTGCA 58.150 42.857 22.22 22.22 44.86 4.57
15 16 4.245660 TCTACTTGTCTTACATGCAGTGC 58.754 43.478 8.58 8.58 0.00 4.40
16 17 6.785488 TTTCTACTTGTCTTACATGCAGTG 57.215 37.500 0.00 0.00 0.00 3.66
17 18 6.204882 GGTTTTCTACTTGTCTTACATGCAGT 59.795 38.462 0.00 0.00 0.00 4.40
18 19 6.348540 GGGTTTTCTACTTGTCTTACATGCAG 60.349 42.308 0.00 0.00 0.00 4.41
19 20 5.472137 GGGTTTTCTACTTGTCTTACATGCA 59.528 40.000 0.00 0.00 0.00 3.96
20 21 5.106277 GGGGTTTTCTACTTGTCTTACATGC 60.106 44.000 0.00 0.00 0.00 4.06
21 22 5.121768 CGGGGTTTTCTACTTGTCTTACATG 59.878 44.000 0.00 0.00 0.00 3.21
22 23 5.221783 ACGGGGTTTTCTACTTGTCTTACAT 60.222 40.000 0.00 0.00 0.00 2.29
23 24 4.101430 ACGGGGTTTTCTACTTGTCTTACA 59.899 41.667 0.00 0.00 0.00 2.41
24 25 4.450080 CACGGGGTTTTCTACTTGTCTTAC 59.550 45.833 0.00 0.00 0.00 2.34
25 26 4.344679 TCACGGGGTTTTCTACTTGTCTTA 59.655 41.667 0.00 0.00 0.00 2.10
26 27 3.135167 TCACGGGGTTTTCTACTTGTCTT 59.865 43.478 0.00 0.00 0.00 3.01
27 28 2.701951 TCACGGGGTTTTCTACTTGTCT 59.298 45.455 0.00 0.00 0.00 3.41
28 29 3.064931 CTCACGGGGTTTTCTACTTGTC 58.935 50.000 0.00 0.00 0.00 3.18
29 30 2.224450 CCTCACGGGGTTTTCTACTTGT 60.224 50.000 0.00 0.00 0.00 3.16
30 31 2.423577 CCTCACGGGGTTTTCTACTTG 58.576 52.381 0.00 0.00 0.00 3.16
31 32 1.271217 GCCTCACGGGGTTTTCTACTT 60.271 52.381 0.00 0.00 35.12 2.24
32 33 0.323957 GCCTCACGGGGTTTTCTACT 59.676 55.000 0.00 0.00 35.12 2.57
33 34 0.675837 GGCCTCACGGGGTTTTCTAC 60.676 60.000 0.00 0.00 35.12 2.59
34 35 0.838987 AGGCCTCACGGGGTTTTCTA 60.839 55.000 0.00 0.00 35.12 2.10
35 36 0.838987 TAGGCCTCACGGGGTTTTCT 60.839 55.000 9.68 0.00 35.12 2.52
36 37 0.037160 TTAGGCCTCACGGGGTTTTC 59.963 55.000 9.68 0.00 35.12 2.29
37 38 0.251033 GTTAGGCCTCACGGGGTTTT 60.251 55.000 9.68 0.00 35.12 2.43
38 39 1.377612 GTTAGGCCTCACGGGGTTT 59.622 57.895 9.68 0.00 35.12 3.27
39 40 2.599757 GGTTAGGCCTCACGGGGTT 61.600 63.158 9.68 0.00 35.12 4.11
40 41 3.007323 GGTTAGGCCTCACGGGGT 61.007 66.667 9.68 0.00 35.12 4.95
41 42 2.687566 AGGTTAGGCCTCACGGGG 60.688 66.667 9.68 0.00 46.96 5.73
42 43 1.838073 AACAGGTTAGGCCTCACGGG 61.838 60.000 9.68 6.81 46.96 5.28
43 44 0.036306 AAACAGGTTAGGCCTCACGG 59.964 55.000 9.68 7.22 46.96 4.94
44 45 1.892209 AAAACAGGTTAGGCCTCACG 58.108 50.000 9.68 0.00 46.96 4.35
45 46 4.648651 TCTAAAAACAGGTTAGGCCTCAC 58.351 43.478 9.68 9.09 46.96 3.51
46 47 4.986054 TCTAAAAACAGGTTAGGCCTCA 57.014 40.909 9.68 0.00 46.96 3.86
47 48 6.659668 AGATTTCTAAAAACAGGTTAGGCCTC 59.340 38.462 9.68 0.00 46.96 4.70
49 50 6.835819 AGATTTCTAAAAACAGGTTAGGCC 57.164 37.500 0.00 0.00 37.58 5.19
50 51 9.622004 GTTAAGATTTCTAAAAACAGGTTAGGC 57.378 33.333 0.00 0.00 0.00 3.93
51 52 9.821662 CGTTAAGATTTCTAAAAACAGGTTAGG 57.178 33.333 0.00 0.00 0.00 2.69
62 63 9.226606 ACACCATGATTCGTTAAGATTTCTAAA 57.773 29.630 0.00 0.00 0.00 1.85
63 64 8.786826 ACACCATGATTCGTTAAGATTTCTAA 57.213 30.769 0.00 0.00 0.00 2.10
64 65 9.529325 CTACACCATGATTCGTTAAGATTTCTA 57.471 33.333 0.00 0.00 0.00 2.10
65 66 7.495934 CCTACACCATGATTCGTTAAGATTTCT 59.504 37.037 0.00 0.00 0.00 2.52
66 67 7.494625 TCCTACACCATGATTCGTTAAGATTTC 59.505 37.037 0.00 0.00 0.00 2.17
67 68 7.335627 TCCTACACCATGATTCGTTAAGATTT 58.664 34.615 0.00 0.00 0.00 2.17
68 69 6.884832 TCCTACACCATGATTCGTTAAGATT 58.115 36.000 0.00 0.00 0.00 2.40
69 70 6.479972 TCCTACACCATGATTCGTTAAGAT 57.520 37.500 0.00 0.00 0.00 2.40
70 71 5.925506 TCCTACACCATGATTCGTTAAGA 57.074 39.130 0.00 0.00 0.00 2.10
71 72 6.511767 GCATTCCTACACCATGATTCGTTAAG 60.512 42.308 0.00 0.00 0.00 1.85
72 73 5.295787 GCATTCCTACACCATGATTCGTTAA 59.704 40.000 0.00 0.00 0.00 2.01
73 74 4.814234 GCATTCCTACACCATGATTCGTTA 59.186 41.667 0.00 0.00 0.00 3.18
74 75 3.627577 GCATTCCTACACCATGATTCGTT 59.372 43.478 0.00 0.00 0.00 3.85
75 76 3.206150 GCATTCCTACACCATGATTCGT 58.794 45.455 0.00 0.00 0.00 3.85
76 77 3.205338 TGCATTCCTACACCATGATTCG 58.795 45.455 0.00 0.00 0.00 3.34
77 78 5.343249 GTTTGCATTCCTACACCATGATTC 58.657 41.667 0.00 0.00 0.00 2.52
78 79 4.160252 GGTTTGCATTCCTACACCATGATT 59.840 41.667 0.00 0.00 0.00 2.57
79 80 3.701040 GGTTTGCATTCCTACACCATGAT 59.299 43.478 0.00 0.00 0.00 2.45
80 81 3.088532 GGTTTGCATTCCTACACCATGA 58.911 45.455 0.00 0.00 0.00 3.07
81 82 2.824936 TGGTTTGCATTCCTACACCATG 59.175 45.455 8.73 0.00 29.11 3.66
82 83 3.168035 TGGTTTGCATTCCTACACCAT 57.832 42.857 8.73 0.00 29.11 3.55
83 84 2.666272 TGGTTTGCATTCCTACACCA 57.334 45.000 8.73 0.00 31.73 4.17
84 85 4.523083 TCTATGGTTTGCATTCCTACACC 58.477 43.478 8.73 0.00 0.00 4.16
85 86 5.428253 TCTCTATGGTTTGCATTCCTACAC 58.572 41.667 8.73 0.00 0.00 2.90
86 87 5.692115 TCTCTATGGTTTGCATTCCTACA 57.308 39.130 8.73 0.00 0.00 2.74
87 88 7.420800 CAATTCTCTATGGTTTGCATTCCTAC 58.579 38.462 8.73 0.00 0.00 3.18
88 89 6.039717 GCAATTCTCTATGGTTTGCATTCCTA 59.960 38.462 8.73 0.00 41.67 2.94
89 90 5.163478 GCAATTCTCTATGGTTTGCATTCCT 60.163 40.000 8.73 0.00 41.67 3.36
90 91 5.045872 GCAATTCTCTATGGTTTGCATTCC 58.954 41.667 0.00 0.00 41.67 3.01
91 92 5.653507 TGCAATTCTCTATGGTTTGCATTC 58.346 37.500 4.66 0.00 45.42 2.67
92 93 5.664294 TGCAATTCTCTATGGTTTGCATT 57.336 34.783 4.66 0.00 45.42 3.56
95 96 4.365723 CCATGCAATTCTCTATGGTTTGC 58.634 43.478 0.00 0.00 42.23 3.68
100 101 5.702670 ACGAATACCATGCAATTCTCTATGG 59.297 40.000 13.30 0.00 44.38 2.74
101 102 6.791887 ACGAATACCATGCAATTCTCTATG 57.208 37.500 13.30 0.00 31.29 2.23
102 103 6.146184 CGAACGAATACCATGCAATTCTCTAT 59.854 38.462 13.30 1.71 31.29 1.98
103 104 5.462068 CGAACGAATACCATGCAATTCTCTA 59.538 40.000 13.30 0.00 31.29 2.43
104 105 4.271049 CGAACGAATACCATGCAATTCTCT 59.729 41.667 13.30 3.95 31.29 3.10
105 106 4.270084 TCGAACGAATACCATGCAATTCTC 59.730 41.667 13.30 6.90 31.29 2.87
106 107 4.034048 GTCGAACGAATACCATGCAATTCT 59.966 41.667 13.30 0.52 31.29 2.40
107 108 4.034048 AGTCGAACGAATACCATGCAATTC 59.966 41.667 0.00 0.00 0.00 2.17
108 109 3.938963 AGTCGAACGAATACCATGCAATT 59.061 39.130 0.00 0.00 0.00 2.32
109 110 3.531538 AGTCGAACGAATACCATGCAAT 58.468 40.909 0.00 0.00 0.00 3.56
110 111 2.967362 AGTCGAACGAATACCATGCAA 58.033 42.857 0.00 0.00 0.00 4.08
111 112 2.665649 AGTCGAACGAATACCATGCA 57.334 45.000 0.00 0.00 0.00 3.96
112 113 3.242316 GGAAAGTCGAACGAATACCATGC 60.242 47.826 12.61 0.00 0.00 4.06
113 114 3.308866 GGGAAAGTCGAACGAATACCATG 59.691 47.826 16.65 0.00 0.00 3.66
114 115 3.528532 GGGAAAGTCGAACGAATACCAT 58.471 45.455 16.65 0.01 0.00 3.55
115 116 2.354003 GGGGAAAGTCGAACGAATACCA 60.354 50.000 16.65 0.00 0.00 3.25
116 117 2.274437 GGGGAAAGTCGAACGAATACC 58.726 52.381 0.00 5.55 0.00 2.73
117 118 2.963432 TGGGGAAAGTCGAACGAATAC 58.037 47.619 0.00 0.00 0.00 1.89
118 119 3.681593 TTGGGGAAAGTCGAACGAATA 57.318 42.857 0.00 0.00 0.00 1.75
119 120 2.554370 TTGGGGAAAGTCGAACGAAT 57.446 45.000 0.00 0.00 0.00 3.34
120 121 2.554370 ATTGGGGAAAGTCGAACGAA 57.446 45.000 0.00 0.00 0.00 3.85
121 122 3.681593 TTATTGGGGAAAGTCGAACGA 57.318 42.857 0.00 0.00 0.00 3.85
122 123 4.957759 ATTTATTGGGGAAAGTCGAACG 57.042 40.909 0.00 0.00 0.00 3.95
123 124 7.919091 GGATTTATTTATTGGGGAAAGTCGAAC 59.081 37.037 0.00 0.00 0.00 3.95
124 125 7.837187 AGGATTTATTTATTGGGGAAAGTCGAA 59.163 33.333 0.00 0.00 0.00 3.71
125 126 7.351166 AGGATTTATTTATTGGGGAAAGTCGA 58.649 34.615 0.00 0.00 0.00 4.20
126 127 7.582667 AGGATTTATTTATTGGGGAAAGTCG 57.417 36.000 0.00 0.00 0.00 4.18
127 128 8.977412 TCAAGGATTTATTTATTGGGGAAAGTC 58.023 33.333 0.00 0.00 0.00 3.01
128 129 8.909423 TCAAGGATTTATTTATTGGGGAAAGT 57.091 30.769 0.00 0.00 0.00 2.66
132 133 8.713036 CCAATTCAAGGATTTATTTATTGGGGA 58.287 33.333 0.00 0.00 37.94 4.81
133 134 8.493607 ACCAATTCAAGGATTTATTTATTGGGG 58.506 33.333 13.28 0.00 43.06 4.96
134 135 9.904198 AACCAATTCAAGGATTTATTTATTGGG 57.096 29.630 13.28 0.00 43.06 4.12
169 170 9.981460 AGAGGTGATCTTTGGATTTAAAGTAAT 57.019 29.630 0.00 0.00 38.49 1.89
171 172 9.886132 GTAGAGGTGATCTTTGGATTTAAAGTA 57.114 33.333 0.00 0.00 39.64 2.24
172 173 8.383175 TGTAGAGGTGATCTTTGGATTTAAAGT 58.617 33.333 0.00 0.00 39.64 2.66
173 174 8.792830 TGTAGAGGTGATCTTTGGATTTAAAG 57.207 34.615 0.00 0.00 39.64 1.85
174 175 9.753674 ATTGTAGAGGTGATCTTTGGATTTAAA 57.246 29.630 0.00 0.00 39.64 1.52
175 176 9.177608 CATTGTAGAGGTGATCTTTGGATTTAA 57.822 33.333 0.00 0.00 39.64 1.52
176 177 8.548025 TCATTGTAGAGGTGATCTTTGGATTTA 58.452 33.333 0.00 0.00 39.64 1.40
177 178 7.405292 TCATTGTAGAGGTGATCTTTGGATTT 58.595 34.615 0.00 0.00 39.64 2.17
178 179 6.962182 TCATTGTAGAGGTGATCTTTGGATT 58.038 36.000 0.00 0.00 39.64 3.01
179 180 6.566079 TCATTGTAGAGGTGATCTTTGGAT 57.434 37.500 0.00 0.00 39.64 3.41
180 181 6.373005 TTCATTGTAGAGGTGATCTTTGGA 57.627 37.500 0.00 0.00 39.64 3.53
181 182 7.452880 TTTTCATTGTAGAGGTGATCTTTGG 57.547 36.000 0.00 0.00 39.64 3.28
214 215 3.889520 ACTACTACTACTTGGCCTTGC 57.110 47.619 3.32 0.00 0.00 4.01
215 216 6.710597 TCATACTACTACTACTTGGCCTTG 57.289 41.667 3.32 0.00 0.00 3.61
216 217 7.916077 AATCATACTACTACTACTTGGCCTT 57.084 36.000 3.32 0.00 0.00 4.35
217 218 7.916077 AAATCATACTACTACTACTTGGCCT 57.084 36.000 3.32 0.00 0.00 5.19
218 219 8.305317 CCTAAATCATACTACTACTACTTGGCC 58.695 40.741 0.00 0.00 0.00 5.36
219 220 9.075678 TCCTAAATCATACTACTACTACTTGGC 57.924 37.037 0.00 0.00 0.00 4.52
295 301 3.961414 GGGGCCAACGGTTGAGGA 61.961 66.667 21.88 0.00 0.00 3.71
355 361 6.799925 CGAAATCGTTGTTTTATAAGGTGCTT 59.200 34.615 0.00 0.00 34.11 3.91
381 387 3.181442 TGACGGAAATTCTTACCCAACCA 60.181 43.478 0.00 0.00 0.00 3.67
389 395 5.278758 CCCTTTGCTTTGACGGAAATTCTTA 60.279 40.000 0.00 0.00 0.00 2.10
390 396 4.501400 CCCTTTGCTTTGACGGAAATTCTT 60.501 41.667 0.00 0.00 0.00 2.52
408 414 2.304470 ACTTTTGTGGTTTGCACCCTTT 59.696 40.909 3.41 0.00 43.49 3.11
839 846 4.869440 CTGCTCCGCTGCCTCTCG 62.869 72.222 0.00 0.00 0.00 4.04
840 847 4.527583 CCTGCTCCGCTGCCTCTC 62.528 72.222 0.00 0.00 0.00 3.20
842 849 4.828925 GACCTGCTCCGCTGCCTC 62.829 72.222 0.00 0.00 0.00 4.70
863 870 1.448717 GAGAGACCAAGGAAGCCGC 60.449 63.158 0.00 0.00 0.00 6.53
868 875 2.820787 GAGAGAACGAGAGACCAAGGAA 59.179 50.000 0.00 0.00 0.00 3.36
872 879 2.558795 CCAAGAGAGAACGAGAGACCAA 59.441 50.000 0.00 0.00 0.00 3.67
877 884 4.156922 TCTTAAGCCAAGAGAGAACGAGAG 59.843 45.833 0.00 0.00 38.39 3.20
880 887 4.866508 TTCTTAAGCCAAGAGAGAACGA 57.133 40.909 0.00 0.00 44.10 3.85
884 891 5.308825 CAACCTTTCTTAAGCCAAGAGAGA 58.691 41.667 14.46 0.51 44.56 3.10
897 909 2.884639 CGTCAATCCACCAACCTTTCTT 59.115 45.455 0.00 0.00 0.00 2.52
899 911 1.068541 GCGTCAATCCACCAACCTTTC 60.069 52.381 0.00 0.00 0.00 2.62
925 937 0.597898 TCGATGCGACACGAACCAAA 60.598 50.000 0.00 0.00 35.62 3.28
981 994 0.684805 TCTCCCTCCTCGGAAAGCTC 60.685 60.000 0.00 0.00 33.16 4.09
1017 1030 2.029518 CGCGGCCTCATCTGCATA 59.970 61.111 0.00 0.00 38.22 3.14
1087 1100 2.829043 TTCTCGCGGTCGATGGGTTG 62.829 60.000 6.13 0.00 44.56 3.77
1142 1165 6.321435 TGTCTGCACACTAGCTAGTATAACAT 59.679 38.462 25.63 5.27 34.13 2.71
1163 1186 6.015856 GCTGATGTGGACACTAGTATATGTCT 60.016 42.308 10.13 0.00 43.91 3.41
1179 1205 0.585357 GAATAGCGCTGCTGATGTGG 59.415 55.000 22.90 0.00 40.10 4.17
1182 1208 3.388308 ACTAAGAATAGCGCTGCTGATG 58.612 45.455 22.90 7.31 40.10 3.07
1188 1214 4.025647 GCAAACCTACTAAGAATAGCGCTG 60.026 45.833 22.90 3.15 31.96 5.18
1191 1217 5.921408 CCTAGCAAACCTACTAAGAATAGCG 59.079 44.000 0.00 0.00 31.96 4.26
1192 1218 6.818233 ACCTAGCAAACCTACTAAGAATAGC 58.182 40.000 0.00 0.00 31.96 2.97
1193 1219 9.668497 AAAACCTAGCAAACCTACTAAGAATAG 57.332 33.333 0.00 0.00 35.14 1.73
1194 1220 9.444600 CAAAACCTAGCAAACCTACTAAGAATA 57.555 33.333 0.00 0.00 0.00 1.75
1195 1221 8.161425 TCAAAACCTAGCAAACCTACTAAGAAT 58.839 33.333 0.00 0.00 0.00 2.40
1196 1222 7.511268 TCAAAACCTAGCAAACCTACTAAGAA 58.489 34.615 0.00 0.00 0.00 2.52
1198 1224 7.739498 TTCAAAACCTAGCAAACCTACTAAG 57.261 36.000 0.00 0.00 0.00 2.18
1201 1227 7.597288 AATTTCAAAACCTAGCAAACCTACT 57.403 32.000 0.00 0.00 0.00 2.57
1202 1228 8.789762 TCTAATTTCAAAACCTAGCAAACCTAC 58.210 33.333 0.00 0.00 0.00 3.18
1203 1229 8.927675 TCTAATTTCAAAACCTAGCAAACCTA 57.072 30.769 0.00 0.00 0.00 3.08
1204 1230 7.039714 CCTCTAATTTCAAAACCTAGCAAACCT 60.040 37.037 0.00 0.00 0.00 3.50
1205 1231 7.039993 TCCTCTAATTTCAAAACCTAGCAAACC 60.040 37.037 0.00 0.00 0.00 3.27
1206 1232 7.882179 TCCTCTAATTTCAAAACCTAGCAAAC 58.118 34.615 0.00 0.00 0.00 2.93
1207 1233 8.650143 ATCCTCTAATTTCAAAACCTAGCAAA 57.350 30.769 0.00 0.00 0.00 3.68
1221 1250 4.162320 TCAGTCCTCGCAATCCTCTAATTT 59.838 41.667 0.00 0.00 0.00 1.82
1223 1252 3.300388 TCAGTCCTCGCAATCCTCTAAT 58.700 45.455 0.00 0.00 0.00 1.73
1349 1384 2.413837 CGCTGTAGGTGCACTAAAAGT 58.586 47.619 17.98 0.00 32.37 2.66
1360 1395 4.467795 AGGATATCATAATGCGCTGTAGGT 59.532 41.667 9.73 0.00 0.00 3.08
1362 1397 5.654497 TGAGGATATCATAATGCGCTGTAG 58.346 41.667 9.73 0.00 31.12 2.74
1363 1398 5.659440 TGAGGATATCATAATGCGCTGTA 57.341 39.130 9.73 0.17 31.12 2.74
1364 1399 4.541973 TGAGGATATCATAATGCGCTGT 57.458 40.909 9.73 0.00 31.12 4.40
1365 1400 6.432607 AATTGAGGATATCATAATGCGCTG 57.567 37.500 9.73 0.00 37.89 5.18
1396 1431 6.889301 AGATCCAATCAAATATTGCACGAT 57.111 33.333 0.00 0.00 0.00 3.73
1398 1433 6.635641 CAGAAGATCCAATCAAATATTGCACG 59.364 38.462 0.00 0.00 0.00 5.34
1441 1476 5.873164 ACCATACGTTTCAGATTACTTCACC 59.127 40.000 0.00 0.00 0.00 4.02
1443 1478 6.070995 AGGACCATACGTTTCAGATTACTTCA 60.071 38.462 0.00 0.00 0.00 3.02
1466 1501 3.548745 TGGTAGCATCATTCAGACAGG 57.451 47.619 0.00 0.00 0.00 4.00
1469 1504 5.393962 GTGTTTTGGTAGCATCATTCAGAC 58.606 41.667 0.00 0.00 0.00 3.51
1485 1520 4.233789 CAATGGTAATGGGTCGTGTTTTG 58.766 43.478 0.00 0.00 0.00 2.44
1492 1527 1.670811 GAGCACAATGGTAATGGGTCG 59.329 52.381 0.00 0.00 0.00 4.79
1495 1530 1.401552 CGTGAGCACAATGGTAATGGG 59.598 52.381 1.20 0.00 0.00 4.00
1543 1578 1.450312 GCACCATCCGGGAACAGAG 60.450 63.158 0.00 0.00 41.15 3.35
1552 1587 1.136891 TGATCTACACAGCACCATCCG 59.863 52.381 0.00 0.00 0.00 4.18
1578 1613 0.539986 AACTACAGGTGCCATACGGG 59.460 55.000 0.00 0.00 40.85 5.28
1611 1646 6.043411 GTCATGCTAGTTAAACACCTCCTAG 58.957 44.000 0.00 0.00 0.00 3.02
1616 1651 4.495422 CGAGTCATGCTAGTTAAACACCT 58.505 43.478 0.00 0.00 0.00 4.00
1618 1653 4.243270 ACCGAGTCATGCTAGTTAAACAC 58.757 43.478 0.00 0.00 0.00 3.32
1620 1655 7.703621 TGTATTACCGAGTCATGCTAGTTAAAC 59.296 37.037 0.00 0.00 0.00 2.01
1621 1656 7.774134 TGTATTACCGAGTCATGCTAGTTAAA 58.226 34.615 0.00 0.00 0.00 1.52
1622 1657 7.337480 TGTATTACCGAGTCATGCTAGTTAA 57.663 36.000 0.00 0.00 0.00 2.01
1649 1700 4.546674 ACAAACAAGTTTTGGGATCCTCT 58.453 39.130 12.58 0.27 33.92 3.69
1666 1717 6.367422 TCAAACAAACCAACATTCTGACAAAC 59.633 34.615 0.00 0.00 0.00 2.93
1710 1765 5.538053 TGATTAGCCAGGTTTCATGTTGAAA 59.462 36.000 0.00 0.00 43.37 2.69
1827 1933 8.204886 GCTGATGGCCTTCACAAAATTTTGTC 62.205 42.308 29.21 18.90 41.17 3.18
1861 1968 5.997746 TGTCAGCCATGATAAATAGGTTAGC 59.002 40.000 0.00 0.00 37.87 3.09
1901 2008 9.604626 CTTAGAATGCTCGAAAATAATGGAATC 57.395 33.333 0.00 0.00 0.00 2.52
1966 2076 5.495640 TGAGCAATGAACATATGTGGTGTA 58.504 37.500 9.63 0.00 0.00 2.90
1993 2105 3.502211 CAGTTCCAACACCAACAGATACC 59.498 47.826 0.00 0.00 0.00 2.73
2075 2187 6.866480 TCCTGAAAAATAGCATCCATTGTTC 58.134 36.000 0.00 0.00 32.45 3.18
2078 2190 7.104043 TCTTCCTGAAAAATAGCATCCATTG 57.896 36.000 0.00 0.00 0.00 2.82
2085 2197 5.068198 GCATCCATCTTCCTGAAAAATAGCA 59.932 40.000 0.00 0.00 0.00 3.49
2095 2547 5.314529 ACATGAATAGCATCCATCTTCCTG 58.685 41.667 0.00 0.00 34.15 3.86
2121 2581 6.913873 AAATCAAAATGCATAATCCAGTGC 57.086 33.333 0.00 0.00 41.61 4.40
2131 2591 4.155280 GCTGGCTTGAAAATCAAAATGCAT 59.845 37.500 0.00 0.00 35.73 3.96
2235 2704 0.322456 TTTCCAGATCGCCCACAAGG 60.322 55.000 0.00 0.00 39.47 3.61
2236 2705 1.533625 TTTTCCAGATCGCCCACAAG 58.466 50.000 0.00 0.00 0.00 3.16
2237 2706 2.214376 ATTTTCCAGATCGCCCACAA 57.786 45.000 0.00 0.00 0.00 3.33
2263 2769 6.678547 AGTTGGAGAGTGTAAGGATCTCTAT 58.321 40.000 0.00 0.00 39.53 1.98
2357 2865 3.535561 AGCAGGATCAGTTTTCCGTATG 58.464 45.455 0.00 0.00 38.36 2.39
2362 2870 6.765915 AGAAATAAGCAGGATCAGTTTTCC 57.234 37.500 0.00 0.00 0.00 3.13
2377 2885 4.321974 GCCACCAACCTGGAAAGAAATAAG 60.322 45.833 0.00 0.00 40.96 1.73
2384 2893 0.542702 ATGGCCACCAACCTGGAAAG 60.543 55.000 8.16 0.00 40.96 2.62
2598 3127 2.345991 TGGACGCCCAAGCACTAC 59.654 61.111 0.00 0.00 40.09 2.73
2647 3176 0.870393 CCATGCTGTCACACACTCAC 59.130 55.000 0.00 0.00 0.00 3.51
2650 3179 2.928801 TTACCATGCTGTCACACACT 57.071 45.000 0.00 0.00 0.00 3.55
2829 3358 4.309099 TGGCATTGAAGAAACAAATCAGC 58.691 39.130 0.00 0.00 33.44 4.26
2929 3618 8.869897 TGTAAATTACGAGTAGCATTGAAGAAG 58.130 33.333 0.00 0.00 0.00 2.85
2939 3628 7.000575 TCTGCATTTGTAAATTACGAGTAGC 57.999 36.000 0.00 3.46 0.00 3.58
2985 3674 9.566432 GTGAATGAGGTATCAGAAATTTAGGAT 57.434 33.333 8.58 8.58 39.29 3.24
2986 3675 8.772250 AGTGAATGAGGTATCAGAAATTTAGGA 58.228 33.333 0.00 0.00 39.29 2.94
2987 3676 8.970859 AGTGAATGAGGTATCAGAAATTTAGG 57.029 34.615 0.00 0.00 39.29 2.69
2988 3677 9.050601 GGAGTGAATGAGGTATCAGAAATTTAG 57.949 37.037 0.00 0.00 39.29 1.85
2989 3678 8.772250 AGGAGTGAATGAGGTATCAGAAATTTA 58.228 33.333 0.00 0.00 39.29 1.40
3026 3715 7.455008 TCCTGAAAGTAGAACTAACATCTCCTT 59.545 37.037 0.00 0.00 0.00 3.36
3147 3838 3.344515 TGAGACAGCGCTAGAGACTTTA 58.655 45.455 10.99 0.00 0.00 1.85
3231 3922 8.978564 TGAACGCATAATTGAAACATAATTGT 57.021 26.923 0.00 0.00 37.82 2.71
3246 3937 3.916359 TCCCCAGTATTGAACGCATAA 57.084 42.857 0.00 0.00 0.00 1.90
3265 3958 3.857157 TGGCCTAGGGATATGTTGTTC 57.143 47.619 11.72 0.00 0.00 3.18
3274 3967 2.741159 TGGTCATATGGCCTAGGGAT 57.259 50.000 26.20 0.00 41.34 3.85
3275 3968 2.741159 ATGGTCATATGGCCTAGGGA 57.259 50.000 26.20 6.85 41.34 4.20
3326 4019 3.866910 GCGTCAATTTCGGTATGGAACTA 59.133 43.478 2.71 0.00 0.00 2.24
3354 4047 1.863454 CACGATGCTCAATGGACTAGC 59.137 52.381 0.00 0.00 36.77 3.42
3369 4062 5.475719 TGTAACTAGCAGTTTAAGCACGAT 58.524 37.500 6.82 0.00 39.51 3.73
3371 4064 5.220416 GGATGTAACTAGCAGTTTAAGCACG 60.220 44.000 6.82 0.00 39.51 5.34
3424 4215 7.566760 ACGGTTATGATTTATGAATGCAAGA 57.433 32.000 0.00 0.00 0.00 3.02
3462 4253 4.929211 TGTCCAACAAGATGAGTTATCACG 59.071 41.667 0.00 0.00 38.57 4.35
3578 4370 7.025963 GGAATGAAATGCTAGCATAATACAGC 58.974 38.462 29.77 19.22 35.31 4.40
3580 4372 6.710295 ACGGAATGAAATGCTAGCATAATACA 59.290 34.615 29.77 23.81 35.31 2.29
3582 4374 7.744087 AACGGAATGAAATGCTAGCATAATA 57.256 32.000 29.77 18.32 35.31 0.98
3584 4376 6.449635 AAACGGAATGAAATGCTAGCATAA 57.550 33.333 29.77 18.54 35.31 1.90
3589 4381 6.863126 ACAAAGAAAACGGAATGAAATGCTAG 59.137 34.615 0.00 0.00 0.00 3.42
3592 4384 5.905480 ACAAAGAAAACGGAATGAAATGC 57.095 34.783 0.00 0.00 0.00 3.56
3593 4385 7.009999 TGTCAACAAAGAAAACGGAATGAAATG 59.990 33.333 0.00 0.00 0.00 2.32
3594 4386 7.010091 GTGTCAACAAAGAAAACGGAATGAAAT 59.990 33.333 0.00 0.00 0.00 2.17
3595 4387 6.309251 GTGTCAACAAAGAAAACGGAATGAAA 59.691 34.615 0.00 0.00 0.00 2.69
3596 4388 5.802956 GTGTCAACAAAGAAAACGGAATGAA 59.197 36.000 0.00 0.00 0.00 2.57
3599 4391 5.576447 AGTGTCAACAAAGAAAACGGAAT 57.424 34.783 0.00 0.00 0.00 3.01
3602 4394 4.481463 ACAAGTGTCAACAAAGAAAACGG 58.519 39.130 0.00 0.00 0.00 4.44
3603 4395 7.734538 ATAACAAGTGTCAACAAAGAAAACG 57.265 32.000 0.00 0.00 0.00 3.60
3626 4418 8.076178 GCAAACGAAGGTAGCATGATAATAAAT 58.924 33.333 0.00 0.00 0.00 1.40
3629 4421 6.052360 TGCAAACGAAGGTAGCATGATAATA 58.948 36.000 0.00 0.00 33.88 0.98
3630 4422 4.881273 TGCAAACGAAGGTAGCATGATAAT 59.119 37.500 0.00 0.00 33.88 1.28
3635 4427 2.076100 TCTGCAAACGAAGGTAGCATG 58.924 47.619 0.00 0.00 36.91 4.06
3646 4441 5.580691 TCAAGTAATCACCTATCTGCAAACG 59.419 40.000 0.00 0.00 0.00 3.60
3711 4506 0.514691 GCTTAGTGTGCAGCAGACAC 59.485 55.000 23.71 15.69 43.45 3.67
3712 4507 0.106521 TGCTTAGTGTGCAGCAGACA 59.893 50.000 23.71 7.94 41.20 3.41
3749 4546 5.443824 CGCACAGCTCAAGATAATAATAGCG 60.444 44.000 0.00 0.00 35.17 4.26
3753 4550 5.007039 CACACGCACAGCTCAAGATAATAAT 59.993 40.000 0.00 0.00 0.00 1.28
3754 4551 4.329801 CACACGCACAGCTCAAGATAATAA 59.670 41.667 0.00 0.00 0.00 1.40
3755 4552 3.865164 CACACGCACAGCTCAAGATAATA 59.135 43.478 0.00 0.00 0.00 0.98
3776 4573 2.260639 AAGGAGAGCTTCATCCCTCA 57.739 50.000 9.31 0.00 36.14 3.86
3807 4604 1.263356 TCTGGTTCCAGTTCCCTACG 58.737 55.000 17.00 0.00 35.70 3.51
3877 4678 4.260825 GCAAGCAATCACATCAGATCTCTG 60.261 45.833 0.00 0.56 45.08 3.35
3881 4683 5.238868 ACATAGCAAGCAATCACATCAGATC 59.761 40.000 0.00 0.00 0.00 2.75
4005 4817 8.856490 ATCGTCATTTATTTGGTAAATTCAGC 57.144 30.769 0.00 0.00 40.23 4.26
4056 4871 5.175856 GCATCAGATGTTACTGGTAACGATC 59.824 44.000 12.18 16.92 46.19 3.69
4091 4908 8.945758 CTCATTATCTGAGTTCACAAGTTTTG 57.054 34.615 0.00 0.00 45.42 2.44
4127 4944 7.041984 GGGAGTTCACATAATCCTACGAAATTC 60.042 40.741 0.00 0.00 32.18 2.17
4142 4962 2.042162 AGGCAGAAATGGGAGTTCACAT 59.958 45.455 0.00 0.00 42.84 3.21
4146 4966 3.914426 TCTAGGCAGAAATGGGAGTTC 57.086 47.619 0.00 0.00 0.00 3.01
4185 5005 2.961741 TGGTAACTTGCTTTCATTGCCA 59.038 40.909 0.00 0.00 34.87 4.92
4186 5006 3.578688 CTGGTAACTTGCTTTCATTGCC 58.421 45.455 0.00 0.00 37.61 4.52
4187 5007 3.578688 CCTGGTAACTTGCTTTCATTGC 58.421 45.455 0.00 0.00 37.61 3.56
4190 5010 1.812571 CGCCTGGTAACTTGCTTTCAT 59.187 47.619 0.00 0.00 37.61 2.57
4203 5137 1.003118 TCATTAGCAAGAACGCCTGGT 59.997 47.619 0.00 0.00 0.00 4.00
4265 5210 3.557264 GGATCTCAAAGACGAAACCAGGT 60.557 47.826 0.00 0.00 0.00 4.00
4266 5211 3.003480 GGATCTCAAAGACGAAACCAGG 58.997 50.000 0.00 0.00 0.00 4.45
4267 5212 3.003480 GGGATCTCAAAGACGAAACCAG 58.997 50.000 0.00 0.00 0.00 4.00
4268 5213 2.637872 AGGGATCTCAAAGACGAAACCA 59.362 45.455 0.00 0.00 0.00 3.67
4270 5215 3.665190 ACAGGGATCTCAAAGACGAAAC 58.335 45.455 0.00 0.00 0.00 2.78
4273 5218 2.897326 TCAACAGGGATCTCAAAGACGA 59.103 45.455 0.00 0.00 0.00 4.20
4274 5219 3.319137 TCAACAGGGATCTCAAAGACG 57.681 47.619 0.00 0.00 0.00 4.18
4276 5221 4.286808 TGACATCAACAGGGATCTCAAAGA 59.713 41.667 0.00 0.00 0.00 2.52
4277 5222 4.582869 TGACATCAACAGGGATCTCAAAG 58.417 43.478 0.00 0.00 0.00 2.77
4278 5223 4.639078 TGACATCAACAGGGATCTCAAA 57.361 40.909 0.00 0.00 0.00 2.69
4279 5224 4.849813 ATGACATCAACAGGGATCTCAA 57.150 40.909 0.00 0.00 28.26 3.02
4280 5225 5.674525 GTTATGACATCAACAGGGATCTCA 58.325 41.667 0.00 0.00 28.86 3.27
4281 5226 4.747108 CGTTATGACATCAACAGGGATCTC 59.253 45.833 0.00 0.00 0.00 2.75
4282 5227 4.405680 TCGTTATGACATCAACAGGGATCT 59.594 41.667 0.00 0.00 0.00 2.75
4283 5228 4.693283 TCGTTATGACATCAACAGGGATC 58.307 43.478 0.00 0.00 0.00 3.36
4284 5229 4.753516 TCGTTATGACATCAACAGGGAT 57.246 40.909 0.00 0.00 0.00 3.85
4286 5231 4.000325 TGTTCGTTATGACATCAACAGGG 59.000 43.478 0.00 0.00 0.00 4.45
4299 5245 1.628846 AGACCCTGCCTTGTTCGTTAT 59.371 47.619 0.00 0.00 0.00 1.89
4302 5248 0.250338 GAAGACCCTGCCTTGTTCGT 60.250 55.000 0.00 0.00 0.00 3.85
4313 5259 1.849823 AAGGCAGGCTGAAGACCCT 60.850 57.895 20.86 11.91 0.00 4.34
4327 5273 2.109126 GGATCCGACTGTGCAAGGC 61.109 63.158 0.00 0.00 0.00 4.35
4328 5274 0.460987 GAGGATCCGACTGTGCAAGG 60.461 60.000 5.98 0.00 0.00 3.61
4357 5303 8.270030 TGGAAGTGATTTCATCATCTCAAGTAT 58.730 33.333 0.00 0.00 42.04 2.12
4363 5309 5.645067 TGTGTGGAAGTGATTTCATCATCTC 59.355 40.000 0.00 0.00 42.04 2.75
4364 5310 5.563592 TGTGTGGAAGTGATTTCATCATCT 58.436 37.500 0.00 0.00 42.04 2.90
4365 5311 5.885230 TGTGTGGAAGTGATTTCATCATC 57.115 39.130 0.00 0.00 42.04 2.92
4367 5313 4.701651 GGATGTGTGGAAGTGATTTCATCA 59.298 41.667 0.00 0.00 37.54 3.07
4368 5314 4.701651 TGGATGTGTGGAAGTGATTTCATC 59.298 41.667 0.00 0.00 37.54 2.92
4410 5358 2.949644 TCGTTGCGAGATTCTCCTCATA 59.050 45.455 8.09 0.00 32.86 2.15
4412 5360 1.135373 GTCGTTGCGAGATTCTCCTCA 60.135 52.381 8.09 3.97 36.23 3.86
4437 5385 5.867716 TCTCTTTGTATCTTGCGGAAAGTAC 59.132 40.000 0.00 0.00 37.18 2.73
4438 5386 6.032956 TCTCTTTGTATCTTGCGGAAAGTA 57.967 37.500 0.00 0.00 37.18 2.24
4439 5387 4.894784 TCTCTTTGTATCTTGCGGAAAGT 58.105 39.130 0.00 0.00 37.18 2.66
4440 5388 4.201763 GCTCTCTTTGTATCTTGCGGAAAG 60.202 45.833 0.00 0.00 37.22 2.62
4441 5389 3.684788 GCTCTCTTTGTATCTTGCGGAAA 59.315 43.478 0.00 0.00 0.00 3.13
4442 5390 3.262420 GCTCTCTTTGTATCTTGCGGAA 58.738 45.455 0.00 0.00 0.00 4.30
4443 5391 2.418746 GGCTCTCTTTGTATCTTGCGGA 60.419 50.000 0.00 0.00 0.00 5.54
4444 5392 1.936547 GGCTCTCTTTGTATCTTGCGG 59.063 52.381 0.00 0.00 0.00 5.69
4445 5393 2.621338 TGGCTCTCTTTGTATCTTGCG 58.379 47.619 0.00 0.00 0.00 4.85
4446 5394 3.314635 CCATGGCTCTCTTTGTATCTTGC 59.685 47.826 0.00 0.00 0.00 4.01
4447 5395 4.774124 TCCATGGCTCTCTTTGTATCTTG 58.226 43.478 6.96 0.00 0.00 3.02
4448 5396 5.131642 TCATCCATGGCTCTCTTTGTATCTT 59.868 40.000 6.96 0.00 0.00 2.40
4449 5397 4.657504 TCATCCATGGCTCTCTTTGTATCT 59.342 41.667 6.96 0.00 0.00 1.98
4450 5398 4.965814 TCATCCATGGCTCTCTTTGTATC 58.034 43.478 6.96 0.00 0.00 2.24
4451 5399 4.202440 CCTCATCCATGGCTCTCTTTGTAT 60.202 45.833 6.96 0.00 0.00 2.29
4452 5400 3.135348 CCTCATCCATGGCTCTCTTTGTA 59.865 47.826 6.96 0.00 0.00 2.41
4453 5401 2.092538 CCTCATCCATGGCTCTCTTTGT 60.093 50.000 6.96 0.00 0.00 2.83
4454 5402 2.172082 TCCTCATCCATGGCTCTCTTTG 59.828 50.000 6.96 0.00 0.00 2.77
4455 5403 2.172293 GTCCTCATCCATGGCTCTCTTT 59.828 50.000 6.96 0.00 0.00 2.52
4456 5404 1.767681 GTCCTCATCCATGGCTCTCTT 59.232 52.381 6.96 0.00 0.00 2.85
4457 5405 1.062275 AGTCCTCATCCATGGCTCTCT 60.062 52.381 6.96 0.00 0.00 3.10
4458 5406 1.422531 AGTCCTCATCCATGGCTCTC 58.577 55.000 6.96 0.00 0.00 3.20
4459 5407 1.489649 CAAGTCCTCATCCATGGCTCT 59.510 52.381 6.96 0.00 0.00 4.09
4460 5408 1.964552 CAAGTCCTCATCCATGGCTC 58.035 55.000 6.96 0.00 0.00 4.70
4461 5409 0.106819 GCAAGTCCTCATCCATGGCT 60.107 55.000 6.96 0.00 0.00 4.75
4462 5410 0.394762 TGCAAGTCCTCATCCATGGC 60.395 55.000 6.96 0.00 0.00 4.40
4463 5411 1.340308 TGTGCAAGTCCTCATCCATGG 60.340 52.381 4.97 4.97 0.00 3.66
4464 5412 1.741706 GTGTGCAAGTCCTCATCCATG 59.258 52.381 0.00 0.00 0.00 3.66
4465 5413 1.632409 AGTGTGCAAGTCCTCATCCAT 59.368 47.619 0.00 0.00 0.00 3.41
4466 5414 1.059098 AGTGTGCAAGTCCTCATCCA 58.941 50.000 0.00 0.00 0.00 3.41
4467 5415 1.446907 CAGTGTGCAAGTCCTCATCC 58.553 55.000 0.00 0.00 0.00 3.51
4468 5416 0.801251 GCAGTGTGCAAGTCCTCATC 59.199 55.000 0.00 0.00 44.26 2.92
4507 5476 1.542915 GCTGTCAGACACATTTGGCAT 59.457 47.619 3.32 0.00 33.23 4.40
4510 5479 1.608055 TGGCTGTCAGACACATTTGG 58.392 50.000 3.55 0.00 33.23 3.28
4544 5513 6.017605 GTCCATATGAGCTATGTTGAACTTGG 60.018 42.308 3.65 0.00 36.27 3.61
4546 5515 6.058183 GGTCCATATGAGCTATGTTGAACTT 58.942 40.000 3.65 0.00 38.47 2.66
4580 5549 0.179084 CGTCCACCCTACAATCGCAT 60.179 55.000 0.00 0.00 0.00 4.73
4581 5550 1.216977 CGTCCACCCTACAATCGCA 59.783 57.895 0.00 0.00 0.00 5.10
4582 5551 1.520787 CCGTCCACCCTACAATCGC 60.521 63.158 0.00 0.00 0.00 4.58
4583 5552 0.179119 GTCCGTCCACCCTACAATCG 60.179 60.000 0.00 0.00 0.00 3.34
4588 5557 2.570181 CGTGTCCGTCCACCCTAC 59.430 66.667 0.00 0.00 31.47 3.18
4598 5567 0.389817 TGGAGATCAAAGCGTGTCCG 60.390 55.000 0.00 0.00 37.07 4.79
4600 5569 0.723981 GCTGGAGATCAAAGCGTGTC 59.276 55.000 0.00 0.00 0.00 3.67
4613 5582 0.739112 GAAGAGCAGGTTCGCTGGAG 60.739 60.000 0.00 0.00 44.01 3.86
4619 5588 1.001406 AGACCTTGAAGAGCAGGTTCG 59.999 52.381 0.00 0.00 34.38 3.95
4649 5618 5.964758 AGTGATTGAAAACAAGACAGCAAA 58.035 33.333 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.