Multiple sequence alignment - TraesCS6B01G088500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G088500 chr6B 100.000 3768 0 0 419 4186 64231095 64234862 0.000000e+00 6959.0
1 TraesCS6B01G088500 chr6B 76.992 778 104 48 2943 3687 64328008 64328743 3.950000e-100 375.0
2 TraesCS6B01G088500 chr6B 100.000 200 0 0 1 200 64230677 64230876 1.840000e-98 370.0
3 TraesCS6B01G088500 chrUn 96.909 3332 73 12 508 3822 102837160 102840478 0.000000e+00 5555.0
4 TraesCS6B01G088500 chrUn 89.262 149 13 2 2 150 102836628 102836773 2.570000e-42 183.0
5 TraesCS6B01G088500 chrUn 98.734 79 1 0 4108 4186 102841880 102841958 1.570000e-29 141.0
6 TraesCS6B01G088500 chrUn 91.111 45 4 0 2943 2987 103121788 103121832 1.260000e-05 62.1
7 TraesCS6B01G088500 chr6A 91.708 3256 178 50 477 3664 34979951 34983182 0.000000e+00 4433.0
8 TraesCS6B01G088500 chr6A 86.225 559 47 22 3652 4186 35006372 35006924 2.810000e-161 579.0
9 TraesCS6B01G088500 chr6A 88.182 220 21 3 2943 3159 35183476 35183693 1.490000e-64 257.0
10 TraesCS6B01G088500 chr6A 83.544 158 13 7 3160 3316 35146719 35146864 7.300000e-28 135.0
11 TraesCS6B01G088500 chr3A 100.000 29 0 0 3871 3899 718684068 718684040 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G088500 chr6B 64230677 64234862 4185 False 3664.500000 6959 100.000000 1 4186 2 chr6B.!!$F2 4185
1 TraesCS6B01G088500 chr6B 64328008 64328743 735 False 375.000000 375 76.992000 2943 3687 1 chr6B.!!$F1 744
2 TraesCS6B01G088500 chrUn 102836628 102841958 5330 False 1959.666667 5555 94.968333 2 4186 3 chrUn.!!$F2 4184
3 TraesCS6B01G088500 chr6A 34979951 34983182 3231 False 4433.000000 4433 91.708000 477 3664 1 chr6A.!!$F1 3187
4 TraesCS6B01G088500 chr6A 35006372 35006924 552 False 579.000000 579 86.225000 3652 4186 1 chr6A.!!$F2 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.037017 TTTAGCTGCGCCAACCCTAA 59.963 50.000 4.18 1.62 0.00 2.69 F
800 854 0.170561 GCAAATGCACAGCTCCTCAG 59.829 55.000 0.00 0.00 41.59 3.35 F
829 883 1.645265 CAAATGTGCTGATGTTTCGCG 59.355 47.619 0.00 0.00 0.00 5.87 F
1800 1907 1.210967 TCACTTGGAAACGACCACCTT 59.789 47.619 0.00 0.00 39.85 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1029 1114 0.035881 CAGACTGGCGGGCATCATAT 59.964 55.000 4.16 0.0 0.00 1.78 R
1757 1864 2.235650 AGATGTCATGGTGGACTGTGAG 59.764 50.000 0.00 0.0 38.61 3.51 R
2191 2298 4.219725 TCACGTTCATCTTCCATGTAGACA 59.780 41.667 0.00 0.0 0.00 3.41 R
3253 3372 0.725686 CCAACTTGAGCTGAGCATCG 59.274 55.000 7.39 0.0 38.61 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.250901 GGCGGATTCTGGGCATGTAT 60.251 55.000 0.00 0.00 0.00 2.29
39 40 1.427809 TCTGGGCATGTATGGGAGAG 58.572 55.000 0.00 0.00 0.00 3.20
41 42 1.492176 CTGGGCATGTATGGGAGAGTT 59.508 52.381 0.00 0.00 0.00 3.01
59 60 1.847890 TTCGGTTTAGCTGCGCCAAC 61.848 55.000 4.18 0.00 0.00 3.77
64 65 0.037017 TTTAGCTGCGCCAACCCTAA 59.963 50.000 4.18 1.62 0.00 2.69
96 97 0.530870 GGTGCCTGCTACCGAGAATC 60.531 60.000 0.00 0.00 0.00 2.52
100 101 1.804372 GCCTGCTACCGAGAATCTGTG 60.804 57.143 0.00 0.00 33.50 3.66
134 135 3.574284 TTGATGAAAAATGGCTCGTGG 57.426 42.857 0.00 0.00 0.00 4.94
142 143 1.237285 AATGGCTCGTGGTTGTCAGC 61.237 55.000 0.00 0.00 0.00 4.26
160 161 2.237393 GCTGCTGCTAAGTAGATGCT 57.763 50.000 8.53 0.00 38.33 3.79
161 162 1.865970 GCTGCTGCTAAGTAGATGCTG 59.134 52.381 8.53 0.00 38.33 4.41
162 163 1.865970 CTGCTGCTAAGTAGATGCTGC 59.134 52.381 0.00 8.67 46.71 5.25
163 164 1.224965 GCTGCTAAGTAGATGCTGCC 58.775 55.000 0.00 0.00 42.86 4.85
164 165 1.495878 CTGCTAAGTAGATGCTGCCG 58.504 55.000 0.00 0.00 0.00 5.69
165 166 0.530650 TGCTAAGTAGATGCTGCCGC 60.531 55.000 0.00 0.00 0.00 6.53
182 183 2.827604 GCAGCGTTGCTCTTCACTA 58.172 52.632 17.71 0.00 46.95 2.74
185 186 0.969894 AGCGTTGCTCTTCACTAGGT 59.030 50.000 0.00 0.00 30.62 3.08
192 193 4.617253 TGCTCTTCACTAGGTTGCTTTA 57.383 40.909 0.00 0.00 0.00 1.85
443 444 7.624360 TTGTTGGCATATCGATACTTTTTCT 57.376 32.000 7.41 0.00 0.00 2.52
444 445 8.725405 TTGTTGGCATATCGATACTTTTTCTA 57.275 30.769 7.41 0.00 0.00 2.10
445 446 8.138365 TGTTGGCATATCGATACTTTTTCTAC 57.862 34.615 7.41 3.27 0.00 2.59
447 448 9.472361 GTTGGCATATCGATACTTTTTCTACTA 57.528 33.333 7.41 0.00 0.00 1.82
449 450 9.692749 TGGCATATCGATACTTTTTCTACTAAG 57.307 33.333 7.41 0.00 0.00 2.18
461 462 9.457436 ACTTTTTCTACTAAGTTTGACTTTGGA 57.543 29.630 0.00 0.00 39.51 3.53
467 468 9.675464 TCTACTAAGTTTGACTTTGGAAAAAGA 57.325 29.630 5.27 0.00 39.51 2.52
470 471 9.803315 ACTAAGTTTGACTTTGGAAAAAGAATC 57.197 29.630 5.27 0.00 39.51 2.52
473 474 9.803315 AAGTTTGACTTTGGAAAAAGAATCTAC 57.197 29.630 5.27 0.00 34.11 2.59
475 476 9.750125 GTTTGACTTTGGAAAAAGAATCTACAT 57.250 29.630 5.27 0.00 34.06 2.29
479 480 9.508567 GACTTTGGAAAAAGAATCTACATATGC 57.491 33.333 1.58 0.00 34.06 3.14
480 481 9.023962 ACTTTGGAAAAAGAATCTACATATGCA 57.976 29.630 1.58 0.00 34.06 3.96
481 482 9.294030 CTTTGGAAAAAGAATCTACATATGCAC 57.706 33.333 1.58 0.00 31.58 4.57
482 483 8.579850 TTGGAAAAAGAATCTACATATGCACT 57.420 30.769 1.58 0.00 0.00 4.40
483 484 9.679661 TTGGAAAAAGAATCTACATATGCACTA 57.320 29.630 1.58 0.00 0.00 2.74
484 485 9.330063 TGGAAAAAGAATCTACATATGCACTAG 57.670 33.333 1.58 0.00 0.00 2.57
519 565 3.618690 GGGAGTATCATGGATGCTACC 57.381 52.381 9.41 9.41 45.68 3.18
523 569 3.521126 GAGTATCATGGATGCTACCCCAT 59.479 47.826 0.00 0.00 43.51 4.00
593 640 5.784750 TTTTCATTCGCTCATACAGACTG 57.215 39.130 0.00 0.00 0.00 3.51
594 641 3.443099 TCATTCGCTCATACAGACTGG 57.557 47.619 7.51 0.00 0.00 4.00
595 642 2.760650 TCATTCGCTCATACAGACTGGT 59.239 45.455 7.51 0.00 0.00 4.00
658 706 7.878477 CTGCAATTCAGTCAAACATATTTGT 57.122 32.000 0.00 0.00 39.04 2.83
662 710 9.190858 GCAATTCAGTCAAACATATTTGTGTTA 57.809 29.630 0.00 0.00 44.76 2.41
665 713 9.897744 ATTCAGTCAAACATATTTGTGTTACTG 57.102 29.630 12.24 12.24 43.46 2.74
723 772 1.024271 GTGTTTGAGCTTCCAGTGCA 58.976 50.000 0.00 0.00 0.00 4.57
752 801 2.346766 TGGTCATCACTGCAGTTTGT 57.653 45.000 18.94 2.77 0.00 2.83
800 854 0.170561 GCAAATGCACAGCTCCTCAG 59.829 55.000 0.00 0.00 41.59 3.35
822 876 4.940046 AGAAGTACCTCAAATGTGCTGATG 59.060 41.667 0.00 0.00 0.00 3.07
826 880 4.510038 ACCTCAAATGTGCTGATGTTTC 57.490 40.909 0.00 0.00 0.00 2.78
829 883 1.645265 CAAATGTGCTGATGTTTCGCG 59.355 47.619 0.00 0.00 0.00 5.87
861 917 8.224437 GCTAGTGATGTTTGTCTTTAGTTTCTC 58.776 37.037 0.00 0.00 0.00 2.87
982 1067 5.938125 TCTTCGAATAGGTTTTTGGAGAAGG 59.062 40.000 0.00 0.00 34.90 3.46
992 1077 3.586470 TTTGGAGAAGGGCTGTTTGTA 57.414 42.857 0.00 0.00 0.00 2.41
1147 1232 5.772393 TTCTCTAGATTTAAGTTGCCCCA 57.228 39.130 0.00 0.00 0.00 4.96
1257 1356 8.237267 GTGTAATGCTTGAGTAAACAGCTTTAT 58.763 33.333 0.00 0.00 31.31 1.40
1517 1619 9.884465 GTTATAAGATATGATTGGACAAAGTGC 57.116 33.333 0.00 0.00 0.00 4.40
1800 1907 1.210967 TCACTTGGAAACGACCACCTT 59.789 47.619 0.00 0.00 39.85 3.50
2191 2298 3.112580 CAACGTTGAAGGATTTGCGTTT 58.887 40.909 23.90 0.00 37.67 3.60
2524 2631 5.948162 ACTTTGATCTGTATGGCAAGATTGT 59.052 36.000 1.93 0.00 0.00 2.71
2603 2710 1.823610 ACTAAAGCTCTGGACGGTACC 59.176 52.381 0.16 0.16 0.00 3.34
2698 2805 6.016777 GCCTGCAGTAATAGCTTGATTGTAAT 60.017 38.462 13.81 0.00 0.00 1.89
3187 3304 3.432890 GCAAGGGAAGATAGGGACTGAAG 60.433 52.174 0.00 0.00 41.52 3.02
3242 3359 0.611618 TTCGGACCAAATGGCTGCAT 60.612 50.000 0.50 0.00 39.32 3.96
3253 3372 0.811219 TGGCTGCATCGTCATAGTGC 60.811 55.000 0.50 0.00 39.26 4.40
3280 3399 4.378874 GCTCAGCTCAAGTTGGTTATGTTC 60.379 45.833 2.34 0.00 0.00 3.18
3447 3570 0.450583 GTGTATCGACCGACAGCAGA 59.549 55.000 0.00 0.00 0.00 4.26
3600 3737 4.301628 CAGTGTTGCTTTCTTGGATTTCC 58.698 43.478 0.00 0.00 0.00 3.13
3602 3739 3.004315 GTGTTGCTTTCTTGGATTTCCGA 59.996 43.478 0.00 0.00 39.43 4.55
3617 3754 5.062183 GGATTTCCGAGCACTTTTTAAATGC 59.938 40.000 4.44 4.44 39.74 3.56
3642 3779 4.830600 TGATGATCAATTCATGTGGATGGG 59.169 41.667 0.00 0.00 45.29 4.00
3656 3793 4.263860 TGTGGATGGGATTTCACATGAAGA 60.264 41.667 0.00 0.00 40.68 2.87
3687 3824 3.652869 TCTTCCACTCCCAAGATGAACTT 59.347 43.478 0.00 0.00 39.70 2.66
3851 4029 2.264794 ACCCATCGGTTCGACAGC 59.735 61.111 0.00 0.00 40.58 4.40
3898 4076 4.819761 TCATGTCGCTGCTCCGGC 62.820 66.667 0.00 0.00 39.26 6.13
3938 4116 4.772231 TCCGGTAGGCGCCTCCTT 62.772 66.667 36.73 12.66 44.75 3.36
3955 4133 0.245539 CTTCGGTTTAGGCGAGGACA 59.754 55.000 0.00 0.00 0.00 4.02
3972 4150 1.806542 GACACATTCATGTCACCGCTT 59.193 47.619 1.08 0.00 46.89 4.68
4007 5368 5.934781 CTGAGGGACTAAATCAGGCTATTT 58.065 41.667 0.00 0.00 41.55 1.40
4050 5411 0.988678 AGCTTGTCCCTATCCACCCC 60.989 60.000 0.00 0.00 0.00 4.95
4053 5414 1.268992 TTGTCCCTATCCACCCCGTG 61.269 60.000 0.00 0.00 0.00 4.94
4061 5422 4.230002 CCACCCCGTGTGTGTCGT 62.230 66.667 2.20 0.00 43.85 4.34
4062 5423 2.202960 CACCCCGTGTGTGTCGTT 60.203 61.111 0.00 0.00 40.26 3.85
4064 5425 3.645975 CCCCGTGTGTGTCGTTGC 61.646 66.667 0.00 0.00 0.00 4.17
4078 5439 0.886490 CGTTGCTGCCACTTCCTCTT 60.886 55.000 2.24 0.00 0.00 2.85
4084 5445 1.206849 CTGCCACTTCCTCTTCCTCTC 59.793 57.143 0.00 0.00 0.00 3.20
4098 5459 1.203428 TCCTCTCCCACTTCCAATCCA 60.203 52.381 0.00 0.00 0.00 3.41
4177 5538 1.497991 GCGCCTCAAGCATTACGATA 58.502 50.000 0.00 0.00 44.04 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.658679 TACATGCCCAGAATCCGCCG 62.659 60.000 0.00 0.00 0.00 6.46
32 33 1.275291 CAGCTAAACCGAACTCTCCCA 59.725 52.381 0.00 0.00 0.00 4.37
59 60 2.094752 CACCGTTGCCAGATTTTTAGGG 60.095 50.000 0.00 0.00 0.00 3.53
114 115 2.890311 ACCACGAGCCATTTTTCATCAA 59.110 40.909 0.00 0.00 0.00 2.57
115 116 2.513753 ACCACGAGCCATTTTTCATCA 58.486 42.857 0.00 0.00 0.00 3.07
116 117 3.244976 CAACCACGAGCCATTTTTCATC 58.755 45.455 0.00 0.00 0.00 2.92
117 118 2.627699 ACAACCACGAGCCATTTTTCAT 59.372 40.909 0.00 0.00 0.00 2.57
126 127 2.031163 AGCTGACAACCACGAGCC 59.969 61.111 0.00 0.00 31.43 4.70
142 143 1.865970 GCAGCATCTACTTAGCAGCAG 59.134 52.381 0.00 0.00 40.04 4.24
165 166 1.337260 ACCTAGTGAAGAGCAACGCTG 60.337 52.381 0.00 0.00 39.88 5.18
166 167 0.969894 ACCTAGTGAAGAGCAACGCT 59.030 50.000 0.00 0.00 43.88 5.07
167 168 1.461127 CAACCTAGTGAAGAGCAACGC 59.539 52.381 0.00 0.00 0.00 4.84
173 174 6.255887 CCGTAATAAAGCAACCTAGTGAAGAG 59.744 42.308 0.00 0.00 0.00 2.85
175 176 5.873164 ACCGTAATAAAGCAACCTAGTGAAG 59.127 40.000 0.00 0.00 0.00 3.02
418 419 8.225603 AGAAAAAGTATCGATATGCCAACAAT 57.774 30.769 8.66 0.00 0.00 2.71
419 420 7.624360 AGAAAAAGTATCGATATGCCAACAA 57.376 32.000 8.66 0.00 0.00 2.83
420 421 7.985184 AGTAGAAAAAGTATCGATATGCCAACA 59.015 33.333 8.66 0.00 0.00 3.33
435 436 9.457436 TCCAAAGTCAAACTTAGTAGAAAAAGT 57.543 29.630 0.00 0.00 37.47 2.66
441 442 9.675464 TCTTTTTCCAAAGTCAAACTTAGTAGA 57.325 29.630 0.00 0.00 37.47 2.59
444 445 9.803315 GATTCTTTTTCCAAAGTCAAACTTAGT 57.197 29.630 0.00 0.00 37.47 2.24
447 448 9.803315 GTAGATTCTTTTTCCAAAGTCAAACTT 57.197 29.630 0.00 0.00 40.80 2.66
449 450 9.750125 ATGTAGATTCTTTTTCCAAAGTCAAAC 57.250 29.630 0.00 0.00 40.47 2.93
456 457 9.023962 AGTGCATATGTAGATTCTTTTTCCAAA 57.976 29.630 4.29 0.00 0.00 3.28
457 458 8.579850 AGTGCATATGTAGATTCTTTTTCCAA 57.420 30.769 4.29 0.00 0.00 3.53
458 459 9.330063 CTAGTGCATATGTAGATTCTTTTTCCA 57.670 33.333 4.29 0.00 0.00 3.53
459 460 9.331282 ACTAGTGCATATGTAGATTCTTTTTCC 57.669 33.333 4.29 0.00 0.00 3.13
475 476 9.201989 CCCTCTATTCCAATATACTAGTGCATA 57.798 37.037 5.39 0.00 0.00 3.14
476 477 7.901322 TCCCTCTATTCCAATATACTAGTGCAT 59.099 37.037 5.39 0.00 0.00 3.96
477 478 7.246027 TCCCTCTATTCCAATATACTAGTGCA 58.754 38.462 5.39 0.00 0.00 4.57
478 479 7.397761 ACTCCCTCTATTCCAATATACTAGTGC 59.602 40.741 5.39 0.00 0.00 4.40
479 480 8.887264 ACTCCCTCTATTCCAATATACTAGTG 57.113 38.462 5.39 0.00 0.00 2.74
488 527 6.334296 TCCATGATACTCCCTCTATTCCAAT 58.666 40.000 0.00 0.00 0.00 3.16
492 531 5.424895 AGCATCCATGATACTCCCTCTATTC 59.575 44.000 0.00 0.00 0.00 1.75
519 565 1.225704 GGGAGCACAGGAGAATGGG 59.774 63.158 0.00 0.00 0.00 4.00
523 569 0.250295 CAAACGGGAGCACAGGAGAA 60.250 55.000 0.00 0.00 0.00 2.87
565 611 7.427606 GTCTGTATGAGCGAATGAAAATTTCTG 59.572 37.037 7.29 0.00 0.00 3.02
593 640 5.445010 CGTTACAGTTTATTAACCAGCGACC 60.445 44.000 0.00 0.00 34.71 4.79
594 641 5.345741 TCGTTACAGTTTATTAACCAGCGAC 59.654 40.000 0.00 0.00 34.71 5.19
595 642 5.345741 GTCGTTACAGTTTATTAACCAGCGA 59.654 40.000 0.00 0.00 34.71 4.93
658 706 2.479837 CTGACCAGCGAAACAGTAACA 58.520 47.619 0.00 0.00 0.00 2.41
662 710 4.049393 GCTGACCAGCGAAACAGT 57.951 55.556 6.23 0.00 45.29 3.55
723 772 6.126940 ACTGCAGTGATGACCAAGTATCTAAT 60.127 38.462 20.97 0.00 0.00 1.73
778 832 2.086869 GAGGAGCTGTGCATTTGCTAA 58.913 47.619 10.29 0.00 42.66 3.09
800 854 4.697352 ACATCAGCACATTTGAGGTACTTC 59.303 41.667 0.00 0.00 41.55 3.01
822 876 2.259618 TCACTAGCAGATTCGCGAAAC 58.740 47.619 27.23 23.41 36.85 2.78
826 880 1.845266 ACATCACTAGCAGATTCGCG 58.155 50.000 0.00 0.00 36.85 5.87
829 883 6.734104 AAGACAAACATCACTAGCAGATTC 57.266 37.500 0.00 0.00 0.00 2.52
861 917 6.146837 CAGTCTCTGTTCCAGACATTTTACAG 59.853 42.308 2.84 0.00 42.51 2.74
885 941 7.378181 TCAATAGATAATAGCAGATTCACGCA 58.622 34.615 1.59 0.00 0.00 5.24
992 1077 0.322816 AATTGGCCTCATGTCGCTGT 60.323 50.000 3.32 0.00 0.00 4.40
1029 1114 0.035881 CAGACTGGCGGGCATCATAT 59.964 55.000 4.16 0.00 0.00 1.78
1118 1203 7.336931 GGCAACTTAAATCTAGAGAATGGACAA 59.663 37.037 0.00 0.00 0.00 3.18
1147 1232 5.870978 GCAACAGCAAATCAGATGGTAAAAT 59.129 36.000 0.00 0.00 0.00 1.82
1228 1327 6.263168 AGCTGTTTACTCAAGCATTACACTTT 59.737 34.615 0.00 0.00 0.00 2.66
1517 1619 2.995283 TGAACATTCTCTGGCCTGATG 58.005 47.619 13.33 11.12 0.00 3.07
1757 1864 2.235650 AGATGTCATGGTGGACTGTGAG 59.764 50.000 0.00 0.00 38.61 3.51
2191 2298 4.219725 TCACGTTCATCTTCCATGTAGACA 59.780 41.667 0.00 0.00 0.00 3.41
2318 2425 6.648879 ATAAGGCTACTGAGAGATGACTTC 57.351 41.667 0.00 0.00 0.00 3.01
2603 2710 6.877611 AACAAGTGTTAGTACCTTCCATTG 57.122 37.500 0.00 0.00 36.32 2.82
2698 2805 4.751098 GTGCTGCCAAAAGAATGAATTCAA 59.249 37.500 13.09 0.00 39.23 2.69
3242 3359 0.738389 TGAGCATCGCACTATGACGA 59.262 50.000 0.00 0.00 43.33 4.20
3253 3372 0.725686 CCAACTTGAGCTGAGCATCG 59.274 55.000 7.39 0.00 38.61 3.84
3447 3570 5.535753 AACCAAAGTGCAAAGCTAGAATT 57.464 34.783 0.00 0.00 0.00 2.17
3617 3754 6.447162 CCATCCACATGAATTGATCATCAAG 58.553 40.000 6.19 2.05 45.91 3.02
3656 3793 6.552008 TCTTGGGAGTGGAAGAATTAAACAT 58.448 36.000 0.00 0.00 0.00 2.71
3851 4029 0.037734 ACCTAAACCAAAGGAGGCGG 59.962 55.000 0.00 0.00 37.57 6.13
3938 4116 1.180456 TGTGTCCTCGCCTAAACCGA 61.180 55.000 0.00 0.00 0.00 4.69
3948 4126 2.002586 GGTGACATGAATGTGTCCTCG 58.997 52.381 0.00 0.00 46.17 4.63
3955 4133 1.078709 CGAAGCGGTGACATGAATGT 58.921 50.000 0.00 0.00 45.16 2.71
3977 4155 0.918983 TTTAGTCCCTCAGGGCCATG 59.081 55.000 12.23 12.23 43.94 3.66
3978 4156 1.777272 GATTTAGTCCCTCAGGGCCAT 59.223 52.381 4.08 0.00 43.94 4.40
3979 4157 1.213296 GATTTAGTCCCTCAGGGCCA 58.787 55.000 4.08 0.00 43.94 5.36
3985 4163 5.975988 AAATAGCCTGATTTAGTCCCTCA 57.024 39.130 0.00 0.00 0.00 3.86
4007 5368 0.675083 TTGCCTCGTCGTCCAGTTTA 59.325 50.000 0.00 0.00 0.00 2.01
4050 5411 2.053116 GCAGCAACGACACACACG 60.053 61.111 0.00 0.00 0.00 4.49
4053 5414 1.714899 AAGTGGCAGCAACGACACAC 61.715 55.000 9.17 0.00 36.35 3.82
4061 5422 0.250901 GGAAGAGGAAGTGGCAGCAA 60.251 55.000 0.00 0.00 0.00 3.91
4062 5423 1.130054 AGGAAGAGGAAGTGGCAGCA 61.130 55.000 0.00 0.00 0.00 4.41
4064 5425 1.206849 GAGAGGAAGAGGAAGTGGCAG 59.793 57.143 0.00 0.00 0.00 4.85
4078 5439 1.203428 TGGATTGGAAGTGGGAGAGGA 60.203 52.381 0.00 0.00 0.00 3.71
4084 5445 1.075374 TCACCTTGGATTGGAAGTGGG 59.925 52.381 0.00 0.00 0.00 4.61
4098 5459 3.261897 AGCAGCTTGTAGTATGTCACCTT 59.738 43.478 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.