Multiple sequence alignment - TraesCS6B01G086500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G086500 chr6B 100.000 3425 0 0 1 3425 62652760 62656184 0.000000e+00 6325.0
1 TraesCS6B01G086500 chr6B 88.514 2281 200 35 1160 3425 43520963 43523196 0.000000e+00 2704.0
2 TraesCS6B01G086500 chr6B 90.066 1822 158 18 1610 3425 43549877 43551681 0.000000e+00 2340.0
3 TraesCS6B01G086500 chr6B 89.742 1823 159 22 1610 3425 43561092 43562893 0.000000e+00 2305.0
4 TraesCS6B01G086500 chr6B 89.687 1823 161 21 1610 3425 43572291 43574093 0.000000e+00 2300.0
5 TraesCS6B01G086500 chr6B 90.112 1335 115 14 1796 3124 43533127 43534450 0.000000e+00 1718.0
6 TraesCS6B01G086500 chr6B 87.622 307 32 3 3119 3425 43540174 43540474 5.440000e-93 351.0
7 TraesCS6B01G086500 chr6B 83.384 331 39 10 3106 3424 43438697 43439023 3.340000e-75 292.0
8 TraesCS6B01G086500 chr6B 83.082 331 40 10 3106 3424 43386647 43386973 1.560000e-73 287.0
9 TraesCS6B01G086500 chr6B 80.198 101 16 4 10 108 252244272 252244174 4.740000e-09 73.1
10 TraesCS6B01G086500 chrUn 92.998 1471 81 9 178 1634 94279768 94281230 0.000000e+00 2126.0
11 TraesCS6B01G086500 chrUn 92.714 1496 70 15 181 1646 94345043 94346529 0.000000e+00 2122.0
12 TraesCS6B01G086500 chrUn 93.356 1445 72 11 181 1610 94374089 94375524 0.000000e+00 2115.0
13 TraesCS6B01G086500 chrUn 93.065 1442 76 9 181 1607 94456224 94457656 0.000000e+00 2087.0
14 TraesCS6B01G086500 chrUn 92.610 1475 70 16 181 1625 94399016 94400481 0.000000e+00 2084.0
15 TraesCS6B01G086500 chrUn 92.565 1466 67 22 181 1613 325949473 325950929 0.000000e+00 2065.0
16 TraesCS6B01G086500 chrUn 91.771 1203 90 5 181 1378 94590537 94591735 0.000000e+00 1664.0
17 TraesCS6B01G086500 chrUn 92.395 1144 64 13 181 1312 284306039 284307171 0.000000e+00 1609.0
18 TraesCS6B01G086500 chrUn 90.762 1050 83 6 1634 2681 94346466 94347503 0.000000e+00 1389.0
19 TraesCS6B01G086500 chrUn 90.698 1032 82 6 1652 2681 325489780 325488761 0.000000e+00 1362.0
20 TraesCS6B01G086500 chrUn 90.671 1029 82 6 1655 2681 94400439 94401455 0.000000e+00 1356.0
21 TraesCS6B01G086500 chrUn 90.643 1026 82 6 1658 2681 284307505 284308518 0.000000e+00 1351.0
22 TraesCS6B01G086500 chrUn 90.476 1029 84 6 1655 2681 355223753 355224769 0.000000e+00 1345.0
23 TraesCS6B01G086500 chrUn 88.801 759 66 8 2676 3425 94617602 94618350 0.000000e+00 913.0
24 TraesCS6B01G086500 chrUn 82.769 325 41 12 3106 3420 94216951 94217270 3.370000e-70 276.0
25 TraesCS6B01G086500 chrUn 78.571 350 53 14 3078 3418 421756581 421756245 9.630000e-51 211.0
26 TraesCS6B01G086500 chrUn 74.444 360 67 19 3078 3424 82643702 82644049 7.710000e-27 132.0
27 TraesCS6B01G086500 chr6A 92.880 1236 80 4 380 1610 25580555 25581787 0.000000e+00 1788.0
28 TraesCS6B01G086500 chr6A 91.263 1259 100 5 380 1628 25069899 25071157 0.000000e+00 1707.0
29 TraesCS6B01G086500 chr6A 91.500 1247 89 7 380 1610 25106926 25108171 0.000000e+00 1700.0
30 TraesCS6B01G086500 chr6A 82.891 339 45 11 3073 3406 15730994 15731324 3.340000e-75 292.0
31 TraesCS6B01G086500 chr6A 79.037 353 61 11 3081 3424 614780330 614780678 2.660000e-56 230.0
32 TraesCS6B01G086500 chr6A 79.459 185 33 3 5 185 34259561 34259744 3.590000e-25 126.0
33 TraesCS6B01G086500 chr6D 81.994 361 44 14 3078 3423 46933056 46933410 1.560000e-73 287.0
34 TraesCS6B01G086500 chr1B 81.215 362 49 12 3076 3425 659662030 659661676 1.210000e-69 274.0
35 TraesCS6B01G086500 chr1B 79.787 94 16 3 4 96 498078406 498078497 7.930000e-07 65.8
36 TraesCS6B01G086500 chr1B 79.545 88 14 4 10 96 620659667 620659583 3.690000e-05 60.2
37 TraesCS6B01G086500 chr1D 81.058 359 50 11 3073 3423 372832857 372833205 1.570000e-68 270.0
38 TraesCS6B01G086500 chr1D 80.745 322 50 11 3078 3391 11090216 11089899 1.230000e-59 241.0
39 TraesCS6B01G086500 chr1D 78.063 351 58 15 3081 3424 416848190 416847852 1.610000e-48 204.0
40 TraesCS6B01G086500 chr1D 78.526 312 53 12 3078 3380 441005690 441005384 3.490000e-45 193.0
41 TraesCS6B01G086500 chr1D 76.991 339 66 6 3090 3424 28317479 28317809 2.100000e-42 183.0
42 TraesCS6B01G086500 chr1D 79.439 107 17 5 4 107 260894163 260894267 1.710000e-08 71.3
43 TraesCS6B01G086500 chr4D 80.939 362 50 10 3076 3424 467584525 467584880 5.630000e-68 268.0
44 TraesCS6B01G086500 chr4D 76.667 360 60 17 3080 3425 302692038 302692387 9.770000e-41 178.0
45 TraesCS6B01G086500 chr4D 79.916 239 44 3 3187 3424 54607892 54607657 4.540000e-39 172.0
46 TraesCS6B01G086500 chr4D 78.519 270 45 10 3159 3422 375110074 375109812 7.600000e-37 165.0
47 TraesCS6B01G086500 chr4D 77.432 257 48 7 3171 3424 203645429 203645678 9.910000e-31 145.0
48 TraesCS6B01G086500 chr4D 84.483 58 7 2 42 98 72132486 72132430 4.770000e-04 56.5
49 TraesCS6B01G086500 chr7D 81.089 349 51 10 3081 3424 362378005 362377667 7.290000e-67 265.0
50 TraesCS6B01G086500 chr7D 79.944 359 55 13 3078 3425 535790444 535790796 7.340000e-62 248.0
51 TraesCS6B01G086500 chr7D 81.720 93 13 3 5 95 517314509 517314599 1.320000e-09 75.0
52 TraesCS6B01G086500 chr7D 85.938 64 9 0 10 73 474698748 474698685 6.130000e-08 69.4
53 TraesCS6B01G086500 chr5B 83.051 295 39 9 3138 3424 347693924 347694215 1.220000e-64 257.0
54 TraesCS6B01G086500 chr5B 97.059 34 0 1 42 75 706363694 706363662 4.770000e-04 56.5
55 TraesCS6B01G086500 chr2A 81.212 165 25 6 5 166 14568577 14568416 9.980000e-26 128.0
56 TraesCS6B01G086500 chr2D 83.158 95 12 4 5 98 623953717 623953808 2.190000e-12 84.2
57 TraesCS6B01G086500 chr2D 83.871 62 9 1 10 71 43098167 43098227 1.330000e-04 58.4
58 TraesCS6B01G086500 chr3B 82.292 96 13 4 5 98 46796005 46795912 2.830000e-11 80.5
59 TraesCS6B01G086500 chr3A 80.198 101 18 2 10 108 135527007 135526907 1.320000e-09 75.0
60 TraesCS6B01G086500 chr2B 78.571 98 17 4 10 106 758790959 758790865 1.030000e-05 62.1
61 TraesCS6B01G086500 chr4B 84.483 58 6 3 40 96 184156869 184156924 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G086500 chr6B 62652760 62656184 3424 False 6325.0 6325 100.0000 1 3425 1 chr6B.!!$F9 3424
1 TraesCS6B01G086500 chr6B 43520963 43523196 2233 False 2704.0 2704 88.5140 1160 3425 1 chr6B.!!$F3 2265
2 TraesCS6B01G086500 chr6B 43549877 43551681 1804 False 2340.0 2340 90.0660 1610 3425 1 chr6B.!!$F6 1815
3 TraesCS6B01G086500 chr6B 43561092 43562893 1801 False 2305.0 2305 89.7420 1610 3425 1 chr6B.!!$F7 1815
4 TraesCS6B01G086500 chr6B 43572291 43574093 1802 False 2300.0 2300 89.6870 1610 3425 1 chr6B.!!$F8 1815
5 TraesCS6B01G086500 chr6B 43533127 43534450 1323 False 1718.0 1718 90.1120 1796 3124 1 chr6B.!!$F4 1328
6 TraesCS6B01G086500 chrUn 94279768 94281230 1462 False 2126.0 2126 92.9980 178 1634 1 chrUn.!!$F3 1456
7 TraesCS6B01G086500 chrUn 94374089 94375524 1435 False 2115.0 2115 93.3560 181 1610 1 chrUn.!!$F4 1429
8 TraesCS6B01G086500 chrUn 94456224 94457656 1432 False 2087.0 2087 93.0650 181 1607 1 chrUn.!!$F5 1426
9 TraesCS6B01G086500 chrUn 325949473 325950929 1456 False 2065.0 2065 92.5650 181 1613 1 chrUn.!!$F8 1432
10 TraesCS6B01G086500 chrUn 94345043 94347503 2460 False 1755.5 2122 91.7380 181 2681 2 chrUn.!!$F10 2500
11 TraesCS6B01G086500 chrUn 94399016 94401455 2439 False 1720.0 2084 91.6405 181 2681 2 chrUn.!!$F11 2500
12 TraesCS6B01G086500 chrUn 94590537 94591735 1198 False 1664.0 1664 91.7710 181 1378 1 chrUn.!!$F6 1197
13 TraesCS6B01G086500 chrUn 284306039 284308518 2479 False 1480.0 1609 91.5190 181 2681 2 chrUn.!!$F12 2500
14 TraesCS6B01G086500 chrUn 325488761 325489780 1019 True 1362.0 1362 90.6980 1652 2681 1 chrUn.!!$R1 1029
15 TraesCS6B01G086500 chrUn 355223753 355224769 1016 False 1345.0 1345 90.4760 1655 2681 1 chrUn.!!$F9 1026
16 TraesCS6B01G086500 chrUn 94617602 94618350 748 False 913.0 913 88.8010 2676 3425 1 chrUn.!!$F7 749
17 TraesCS6B01G086500 chr6A 25580555 25581787 1232 False 1788.0 1788 92.8800 380 1610 1 chr6A.!!$F4 1230
18 TraesCS6B01G086500 chr6A 25069899 25071157 1258 False 1707.0 1707 91.2630 380 1628 1 chr6A.!!$F2 1248
19 TraesCS6B01G086500 chr6A 25106926 25108171 1245 False 1700.0 1700 91.5000 380 1610 1 chr6A.!!$F3 1230

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.104487 CCTTGGCATGCACACACAAA 59.896 50.000 21.36 1.02 0.00 2.83 F
973 983 1.066605 GAGCGCATCATTCAAGCCAAT 59.933 47.619 11.47 0.00 0.00 3.16 F
1789 2029 1.152567 CAAAACCCACAGGCCCAGA 60.153 57.895 0.00 0.00 36.11 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1227 1237 0.675633 GCAGAAATGGTTGTGGCTGT 59.324 50.0 0.00 0.00 0.00 4.40 R
1893 2133 0.737019 CAAATGGCGCAATGGTGGTC 60.737 55.0 10.83 0.00 0.00 4.02 R
3325 3584 0.178068 ACCCACGATCTTCAATCGGG 59.822 55.0 11.61 7.47 44.98 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.734104 CTGGTTTCCAAATTTGTTCACAAA 57.266 33.333 16.73 7.55 40.59 2.83
38 39 7.865875 TGTTCACAAATTCATTAAATCACCG 57.134 32.000 0.00 0.00 0.00 4.94
39 40 7.429633 TGTTCACAAATTCATTAAATCACCGT 58.570 30.769 0.00 0.00 0.00 4.83
40 41 7.380870 TGTTCACAAATTCATTAAATCACCGTG 59.619 33.333 0.00 0.00 0.00 4.94
41 42 6.976088 TCACAAATTCATTAAATCACCGTGT 58.024 32.000 0.00 0.00 0.00 4.49
42 43 7.429633 TCACAAATTCATTAAATCACCGTGTT 58.570 30.769 0.00 0.00 0.00 3.32
43 44 7.923344 TCACAAATTCATTAAATCACCGTGTTT 59.077 29.630 0.00 2.00 0.00 2.83
44 45 8.213812 CACAAATTCATTAAATCACCGTGTTTC 58.786 33.333 0.00 0.00 0.00 2.78
45 46 7.923344 ACAAATTCATTAAATCACCGTGTTTCA 59.077 29.630 0.00 0.00 0.00 2.69
46 47 8.759641 CAAATTCATTAAATCACCGTGTTTCAA 58.240 29.630 0.00 0.00 0.00 2.69
47 48 8.879342 AATTCATTAAATCACCGTGTTTCAAA 57.121 26.923 0.00 0.00 0.00 2.69
48 49 8.879342 ATTCATTAAATCACCGTGTTTCAAAA 57.121 26.923 0.00 0.00 0.00 2.44
49 50 8.879342 TTCATTAAATCACCGTGTTTCAAAAT 57.121 26.923 0.00 0.00 0.00 1.82
50 51 8.879342 TCATTAAATCACCGTGTTTCAAAATT 57.121 26.923 0.00 0.00 0.00 1.82
51 52 9.319143 TCATTAAATCACCGTGTTTCAAAATTT 57.681 25.926 0.00 0.00 0.00 1.82
52 53 9.367717 CATTAAATCACCGTGTTTCAAAATTTG 57.632 29.630 0.00 0.00 0.00 2.32
53 54 6.976636 AAATCACCGTGTTTCAAAATTTGT 57.023 29.167 5.56 0.00 0.00 2.83
54 55 6.976636 AATCACCGTGTTTCAAAATTTGTT 57.023 29.167 5.56 0.00 0.00 2.83
55 56 6.582437 ATCACCGTGTTTCAAAATTTGTTC 57.418 33.333 5.56 0.00 0.00 3.18
56 57 5.470368 TCACCGTGTTTCAAAATTTGTTCA 58.530 33.333 5.56 1.68 0.00 3.18
57 58 5.346281 TCACCGTGTTTCAAAATTTGTTCAC 59.654 36.000 5.56 11.46 0.00 3.18
58 59 5.119279 CACCGTGTTTCAAAATTTGTTCACA 59.881 36.000 19.93 13.21 32.18 3.58
59 60 5.696724 ACCGTGTTTCAAAATTTGTTCACAA 59.303 32.000 19.93 0.00 32.18 3.33
153 154 9.790344 ATGTTCATATTTTCCCAATTTTGTTCA 57.210 25.926 0.00 0.00 0.00 3.18
154 155 9.618890 TGTTCATATTTTCCCAATTTTGTTCAA 57.381 25.926 0.00 0.00 0.00 2.69
167 168 9.903185 CCAATTTTGTTCAAAATTCAAAAATGC 57.097 25.926 24.23 0.00 41.87 3.56
171 172 9.903682 TTTTGTTCAAAATTCAAAAATGCTGAA 57.096 22.222 6.61 0.00 37.86 3.02
172 173 9.557338 TTTGTTCAAAATTCAAAAATGCTGAAG 57.443 25.926 0.00 0.00 36.30 3.02
173 174 8.489990 TGTTCAAAATTCAAAAATGCTGAAGA 57.510 26.923 0.00 0.00 36.30 2.87
174 175 8.944029 TGTTCAAAATTCAAAAATGCTGAAGAA 58.056 25.926 0.00 0.00 36.30 2.52
175 176 9.771915 GTTCAAAATTCAAAAATGCTGAAGAAA 57.228 25.926 0.00 0.00 36.30 2.52
235 236 1.042003 ACCTTGGCATGCACACACAA 61.042 50.000 21.36 12.70 0.00 3.33
236 237 0.104487 CCTTGGCATGCACACACAAA 59.896 50.000 21.36 1.02 0.00 2.83
237 238 1.270412 CCTTGGCATGCACACACAAAT 60.270 47.619 21.36 0.00 0.00 2.32
246 247 1.935199 GCACACACAAATTTGCAAGCT 59.065 42.857 18.12 0.00 34.97 3.74
327 328 3.795623 AGCAATTTGATGAGTCATGGC 57.204 42.857 11.20 4.59 33.56 4.40
338 343 2.239402 TGAGTCATGGCCTATCAAAGCA 59.761 45.455 3.32 0.00 0.00 3.91
339 344 3.282021 GAGTCATGGCCTATCAAAGCAA 58.718 45.455 3.32 0.00 0.00 3.91
340 345 3.285484 AGTCATGGCCTATCAAAGCAAG 58.715 45.455 3.32 0.00 0.00 4.01
341 346 2.026641 TCATGGCCTATCAAAGCAAGC 58.973 47.619 3.32 0.00 0.00 4.01
569 578 7.291182 AGTCTTATCTATCTTAACAGGCCACAT 59.709 37.037 5.01 0.00 0.00 3.21
578 587 6.046593 TCTTAACAGGCCACATAAGATTACG 58.953 40.000 15.95 0.00 31.34 3.18
618 627 5.471116 CAGCCATGCTTATCTAGTTTATGCA 59.529 40.000 13.93 13.93 36.40 3.96
742 751 3.385193 CCTTTTTGGTGGTGGAATGAC 57.615 47.619 0.00 0.00 0.00 3.06
753 762 2.100584 GGTGGAATGACAGTGCAACAAA 59.899 45.455 7.62 0.00 41.43 2.83
819 828 3.798548 GCCACCAAACACAACATACCAAG 60.799 47.826 0.00 0.00 0.00 3.61
831 840 8.087750 ACACAACATACCAAGTTATGATTTTGG 58.912 33.333 1.18 1.18 45.37 3.28
859 869 2.023673 CCAAGCACTTTCCACACAAGA 58.976 47.619 0.00 0.00 0.00 3.02
882 892 7.447594 AGAAAATGCCAATTGTGAAAGAGATT 58.552 30.769 4.43 0.00 0.00 2.40
909 919 1.354368 TGGCAGCTATAAATAGGCCCC 59.646 52.381 0.00 0.00 37.08 5.80
922 932 1.453633 AGGCCCCTAGCATGATGATT 58.546 50.000 0.00 0.00 46.50 2.57
935 945 6.791371 AGCATGATGATTATCCTTCCTCATT 58.209 36.000 0.00 0.00 29.45 2.57
951 961 7.094720 CCTTCCTCATTCATCATTCTCATAAGC 60.095 40.741 0.00 0.00 0.00 3.09
965 975 2.804527 TCATAAGCAGAGCGCATCATTC 59.195 45.455 11.47 0.00 46.13 2.67
973 983 1.066605 GAGCGCATCATTCAAGCCAAT 59.933 47.619 11.47 0.00 0.00 3.16
978 988 3.454375 GCATCATTCAAGCCAATCAAGG 58.546 45.455 0.00 0.00 0.00 3.61
1012 1022 5.640147 ACAAATCCACCATGAAGACCTTTA 58.360 37.500 0.00 0.00 0.00 1.85
1064 1074 1.164041 ACCGCCACAACTGCAGTTAC 61.164 55.000 30.67 18.68 36.32 2.50
1134 1144 3.556775 CACAAAAGCAAGTTCCATTGGTG 59.443 43.478 1.86 0.00 40.58 4.17
1226 1236 5.913137 TTTCCATCACAACAACCATATCC 57.087 39.130 0.00 0.00 0.00 2.59
1227 1237 4.582973 TCCATCACAACAACCATATCCA 57.417 40.909 0.00 0.00 0.00 3.41
1233 1243 2.224992 ACAACAACCATATCCACAGCCA 60.225 45.455 0.00 0.00 0.00 4.75
1265 1320 1.497991 CCACAACTACCATATCCGCG 58.502 55.000 0.00 0.00 0.00 6.46
1266 1321 1.202486 CCACAACTACCATATCCGCGT 60.202 52.381 4.92 0.00 0.00 6.01
1280 1398 2.677003 CGCGTCCGCAACCATTTCT 61.677 57.895 12.58 0.00 42.06 2.52
1306 1426 2.122783 ACAACCATATCCACAACCGG 57.877 50.000 0.00 0.00 0.00 5.28
1344 1470 2.093973 ACCACAACAACCAATTTCGCAA 60.094 40.909 0.00 0.00 0.00 4.85
1425 1620 2.228059 CTGATTCCATGCAGGGATGTC 58.772 52.381 22.68 21.22 34.91 3.06
1489 1684 6.152154 AGTTTTGCAACAAAGTACTTACCAGT 59.848 34.615 8.92 3.01 35.05 4.00
1557 1752 3.136123 CGGTGCCAAGCCATCCAG 61.136 66.667 0.00 0.00 0.00 3.86
1598 1796 3.063670 TCTGCATCAACAACAACAACG 57.936 42.857 0.00 0.00 0.00 4.10
1686 1884 5.006165 ACAACAACAACAACAACAACAACAG 59.994 36.000 0.00 0.00 0.00 3.16
1689 1926 3.316283 ACAACAACAACAACAACAGCAG 58.684 40.909 0.00 0.00 0.00 4.24
1789 2029 1.152567 CAAAACCCACAGGCCCAGA 60.153 57.895 0.00 0.00 36.11 3.86
1802 2042 2.061220 CCCAGAGCTCTGTCCAACA 58.939 57.895 35.47 0.00 42.27 3.33
1812 2052 4.065088 GCTCTGTCCAACATCAACAACTA 58.935 43.478 0.00 0.00 0.00 2.24
1818 2058 3.117474 TCCAACATCAACAACTACCCCAA 60.117 43.478 0.00 0.00 0.00 4.12
1842 2082 5.772393 TTGAGGAAATAAGGAACCTAGCA 57.228 39.130 0.00 0.00 32.53 3.49
1845 2085 5.104259 AGGAAATAAGGAACCTAGCACTG 57.896 43.478 0.00 0.00 0.00 3.66
1857 2097 1.248101 TAGCACTGCAGACGCTACCA 61.248 55.000 27.46 15.40 39.64 3.25
1861 2101 1.808799 CTGCAGACGCTACCAGCAG 60.809 63.158 8.42 0.00 42.58 4.24
1890 2130 4.623932 TGTCTACATCCCTCCATATTGC 57.376 45.455 0.00 0.00 0.00 3.56
1891 2131 4.234550 TGTCTACATCCCTCCATATTGCT 58.765 43.478 0.00 0.00 0.00 3.91
1892 2132 4.284490 TGTCTACATCCCTCCATATTGCTC 59.716 45.833 0.00 0.00 0.00 4.26
1893 2133 2.847327 ACATCCCTCCATATTGCTCG 57.153 50.000 0.00 0.00 0.00 5.03
1894 2134 2.329267 ACATCCCTCCATATTGCTCGA 58.671 47.619 0.00 0.00 0.00 4.04
1895 2135 2.037772 ACATCCCTCCATATTGCTCGAC 59.962 50.000 0.00 0.00 0.00 4.20
1994 2240 4.715534 TTCTTAGTCCATGGTTTGGTCA 57.284 40.909 12.58 0.00 46.52 4.02
2007 2253 2.093306 TTGGTCATTGTAGCGGTGAG 57.907 50.000 0.00 0.00 0.00 3.51
2084 2330 6.805713 ACTTGGGAATAAAAGACAAACACAG 58.194 36.000 0.00 0.00 0.00 3.66
2101 2347 5.344743 ACACAGGTCTTGTCTACATATGG 57.655 43.478 7.80 0.00 38.16 2.74
2108 2354 6.879458 AGGTCTTGTCTACATATGGTTGTTTC 59.121 38.462 7.80 0.00 0.00 2.78
2113 2359 8.458573 TTGTCTACATATGGTTGTTTCTTTGT 57.541 30.769 7.80 0.00 0.00 2.83
2131 2377 0.171007 GTGTTCCATTCATGTGCCCG 59.829 55.000 0.00 0.00 0.00 6.13
2132 2378 0.251121 TGTTCCATTCATGTGCCCGT 60.251 50.000 0.00 0.00 0.00 5.28
2261 2507 9.750125 AGTATTTTCTTGGACTTTCAAATTGAC 57.250 29.630 0.00 0.00 0.00 3.18
2300 2546 2.224402 GGACTATCCACATCCTTGGCTC 60.224 54.545 0.00 0.00 36.28 4.70
2316 2562 2.297701 GGCTCGCCCTTGATCAATTAA 58.702 47.619 8.96 0.00 0.00 1.40
2367 2613 7.887996 TCAATTACATTGATTTTTGTGGCTC 57.112 32.000 0.00 0.00 43.84 4.70
2400 2646 7.281841 TCCTCAACATGAGTATATTCATTGCA 58.718 34.615 7.94 0.00 42.80 4.08
2407 2653 7.935755 ACATGAGTATATTCATTGCAGCTACTT 59.064 33.333 7.94 0.00 35.67 2.24
2409 2655 6.642540 TGAGTATATTCATTGCAGCTACTTCG 59.357 38.462 0.00 0.00 0.00 3.79
2455 2702 0.464870 CTGGAGCAGTGCTAGCTGAT 59.535 55.000 19.77 5.21 43.58 2.90
2459 2706 0.747283 AGCAGTGCTAGCTGATTGCC 60.747 55.000 18.11 5.71 41.61 4.52
2463 2710 2.102084 CAGTGCTAGCTGATTGCCTCTA 59.898 50.000 17.23 0.00 44.23 2.43
2477 2724 0.541863 CCTCTAATGTGAAGGGGCGT 59.458 55.000 0.00 0.00 0.00 5.68
2510 2757 3.625897 GTTTTGGGTGGGCCAGGC 61.626 66.667 6.40 1.26 36.17 4.85
2524 2771 1.519455 CAGGCGAGTAAGAAGCGGG 60.519 63.158 0.00 0.00 0.00 6.13
2526 2773 2.890961 GCGAGTAAGAAGCGGGCC 60.891 66.667 0.00 0.00 0.00 5.80
2527 2774 2.202892 CGAGTAAGAAGCGGGCCC 60.203 66.667 13.57 13.57 0.00 5.80
2528 2775 2.987125 GAGTAAGAAGCGGGCCCA 59.013 61.111 24.92 0.00 0.00 5.36
2529 2776 1.527370 GAGTAAGAAGCGGGCCCAT 59.473 57.895 24.92 6.64 0.00 4.00
2569 2816 3.377439 CAAAGCCCCGTAGTTTGTTTTC 58.623 45.455 0.00 0.00 0.00 2.29
2584 2831 7.153315 AGTTTGTTTTCGGTTTACAGGAAAAA 58.847 30.769 10.59 0.00 40.23 1.94
2626 2873 2.358939 GGCCAATATAGGACCGTACG 57.641 55.000 8.69 8.69 0.00 3.67
2627 2874 1.615392 GGCCAATATAGGACCGTACGT 59.385 52.381 15.21 2.02 0.00 3.57
2628 2875 2.819608 GGCCAATATAGGACCGTACGTA 59.180 50.000 15.21 0.00 0.00 3.57
2647 2894 4.021544 ACGTATTGGATGGCAAAACATGTT 60.022 37.500 4.92 4.92 0.00 2.71
2663 2910 2.032634 GTTCGGATGGTTGCGAGCA 61.033 57.895 8.58 8.58 46.65 4.26
2673 2920 0.884704 GTTGCGAGCAGTTTGAGGGA 60.885 55.000 0.00 0.00 0.00 4.20
2681 2928 4.680708 CGAGCAGTTTGAGGGATAGCTTTA 60.681 45.833 0.00 0.00 0.00 1.85
2699 2946 5.900123 AGCTTTAGAGATAGCCCTTACTTGA 59.100 40.000 0.00 0.00 38.14 3.02
2718 2965 0.180878 ACCCCTCGTTCCGAAAACAA 59.819 50.000 0.00 0.00 34.74 2.83
2719 2966 1.202842 ACCCCTCGTTCCGAAAACAAT 60.203 47.619 0.00 0.00 34.74 2.71
2721 2968 3.075884 CCCCTCGTTCCGAAAACAATTA 58.924 45.455 0.00 0.00 34.74 1.40
2731 2978 7.253850 CGTTCCGAAAACAATTATGACGATAGA 60.254 37.037 0.00 0.00 41.38 1.98
2736 2983 8.673275 CGAAAACAATTATGACGATAGATTTGC 58.327 33.333 0.00 0.00 41.38 3.68
2746 2993 2.797156 CGATAGATTTGCCTCGGTTCAG 59.203 50.000 0.00 0.00 39.76 3.02
2748 2995 2.859165 AGATTTGCCTCGGTTCAGAA 57.141 45.000 0.00 0.00 0.00 3.02
2757 3004 3.557595 GCCTCGGTTCAGAAATATGTCAG 59.442 47.826 0.00 0.00 0.00 3.51
2874 3121 1.182667 GGCCAGGTAAATGTTGGGTC 58.817 55.000 0.00 0.00 32.53 4.46
2958 3205 6.223120 TCTCTTTTGCCATTAAGAAAAAGCC 58.777 36.000 3.91 0.00 38.77 4.35
2986 3233 9.412460 TCTTTGGCTGATTTTATTCATAGTGAT 57.588 29.630 0.00 0.00 0.00 3.06
2987 3234 9.459640 CTTTGGCTGATTTTATTCATAGTGATG 57.540 33.333 0.00 0.00 0.00 3.07
3135 3386 2.482142 CCCGTCCTCTCTATCAACAAGC 60.482 54.545 0.00 0.00 0.00 4.01
3136 3387 2.428890 CCGTCCTCTCTATCAACAAGCT 59.571 50.000 0.00 0.00 0.00 3.74
3137 3388 3.632604 CCGTCCTCTCTATCAACAAGCTA 59.367 47.826 0.00 0.00 0.00 3.32
3138 3389 4.261405 CCGTCCTCTCTATCAACAAGCTAG 60.261 50.000 0.00 0.00 0.00 3.42
3141 3392 6.446318 GTCCTCTCTATCAACAAGCTAGATG 58.554 44.000 0.00 0.00 0.00 2.90
3169 3420 3.517100 AGACATCAAGGATACACACAGCT 59.483 43.478 0.00 0.00 41.41 4.24
3170 3421 3.603532 ACATCAAGGATACACACAGCTG 58.396 45.455 13.48 13.48 41.41 4.24
3210 3469 0.109342 AAGATCCCGCCATGGTGATC 59.891 55.000 27.12 24.52 41.28 2.92
3211 3470 1.669115 GATCCCGCCATGGTGATCG 60.669 63.158 27.12 14.45 35.84 3.69
3240 3499 3.118956 AGCATCTGTAGCACTCTAACCAC 60.119 47.826 0.00 0.00 0.00 4.16
3245 3504 1.621814 GTAGCACTCTAACCACCACCA 59.378 52.381 0.00 0.00 0.00 4.17
3265 3524 2.484742 AAGACAACACCCGGATTACC 57.515 50.000 0.73 0.00 0.00 2.85
3325 3584 2.679355 TGCACAAGCGTTGTCATTAC 57.321 45.000 1.17 0.00 43.23 1.89
3348 3607 3.426159 CCGATTGAAGATCGTGGGTTTTG 60.426 47.826 7.53 0.00 39.67 2.44
3391 3650 3.390639 TCACCCAAAAACATTGCCTTCAT 59.609 39.130 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 7.923344 ACGGTGATTTAATGAATTTGTGAACAA 59.077 29.630 0.00 0.00 0.00 2.83
14 15 7.380870 CACGGTGATTTAATGAATTTGTGAACA 59.619 33.333 0.74 0.00 0.00 3.18
15 16 7.381139 ACACGGTGATTTAATGAATTTGTGAAC 59.619 33.333 16.29 0.00 0.00 3.18
16 17 7.429633 ACACGGTGATTTAATGAATTTGTGAA 58.570 30.769 16.29 0.00 0.00 3.18
17 18 6.976088 ACACGGTGATTTAATGAATTTGTGA 58.024 32.000 16.29 0.00 0.00 3.58
18 19 7.636259 AACACGGTGATTTAATGAATTTGTG 57.364 32.000 16.29 0.00 0.00 3.33
19 20 7.923344 TGAAACACGGTGATTTAATGAATTTGT 59.077 29.630 16.29 0.00 0.00 2.83
20 21 8.291888 TGAAACACGGTGATTTAATGAATTTG 57.708 30.769 16.29 0.00 0.00 2.32
21 22 8.879342 TTGAAACACGGTGATTTAATGAATTT 57.121 26.923 16.29 0.41 0.00 1.82
22 23 8.879342 TTTGAAACACGGTGATTTAATGAATT 57.121 26.923 16.29 0.00 0.00 2.17
23 24 8.879342 TTTTGAAACACGGTGATTTAATGAAT 57.121 26.923 16.29 0.00 0.00 2.57
24 25 8.879342 ATTTTGAAACACGGTGATTTAATGAA 57.121 26.923 16.29 5.36 0.00 2.57
25 26 8.879342 AATTTTGAAACACGGTGATTTAATGA 57.121 26.923 16.29 5.17 0.00 2.57
26 27 9.367717 CAAATTTTGAAACACGGTGATTTAATG 57.632 29.630 16.29 4.20 0.00 1.90
27 28 9.103861 ACAAATTTTGAAACACGGTGATTTAAT 57.896 25.926 16.29 7.91 0.00 1.40
28 29 8.480643 ACAAATTTTGAAACACGGTGATTTAA 57.519 26.923 16.29 9.61 0.00 1.52
29 30 8.480643 AACAAATTTTGAAACACGGTGATTTA 57.519 26.923 16.29 3.07 0.00 1.40
30 31 6.976636 ACAAATTTTGAAACACGGTGATTT 57.023 29.167 16.29 11.23 0.00 2.17
31 32 6.591834 TGAACAAATTTTGAAACACGGTGATT 59.408 30.769 16.29 9.52 0.00 2.57
32 33 6.035542 GTGAACAAATTTTGAAACACGGTGAT 59.964 34.615 16.29 0.00 0.00 3.06
33 34 5.346281 GTGAACAAATTTTGAAACACGGTGA 59.654 36.000 16.29 0.00 0.00 4.02
34 35 5.119279 TGTGAACAAATTTTGAAACACGGTG 59.881 36.000 15.81 6.58 35.85 4.94
35 36 5.230942 TGTGAACAAATTTTGAAACACGGT 58.769 33.333 15.81 0.00 35.85 4.83
36 37 5.769967 TGTGAACAAATTTTGAAACACGG 57.230 34.783 15.81 0.00 35.85 4.94
127 128 9.790344 TGAACAAAATTGGGAAAATATGAACAT 57.210 25.926 0.00 0.00 0.00 2.71
128 129 9.618890 TTGAACAAAATTGGGAAAATATGAACA 57.381 25.926 0.00 0.00 0.00 3.18
145 146 9.903682 TTCAGCATTTTTGAATTTTGAACAAAA 57.096 22.222 13.72 13.72 43.48 2.44
146 147 9.557338 CTTCAGCATTTTTGAATTTTGAACAAA 57.443 25.926 0.00 0.00 34.33 2.83
147 148 8.944029 TCTTCAGCATTTTTGAATTTTGAACAA 58.056 25.926 0.00 0.00 34.33 2.83
148 149 8.489990 TCTTCAGCATTTTTGAATTTTGAACA 57.510 26.923 0.00 0.00 34.33 3.18
149 150 9.771915 TTTCTTCAGCATTTTTGAATTTTGAAC 57.228 25.926 0.00 0.00 34.33 3.18
198 199 9.321532 TGCCAAGGTATATTCTAGCTTCTATTA 57.678 33.333 0.00 0.00 33.54 0.98
213 214 2.290577 TGTGTGTGCATGCCAAGGTATA 60.291 45.455 16.68 0.00 0.00 1.47
214 215 1.176527 GTGTGTGCATGCCAAGGTAT 58.823 50.000 16.68 0.00 0.00 2.73
327 328 4.641989 AGTAATGTGGCTTGCTTTGATAGG 59.358 41.667 0.00 0.00 0.00 2.57
338 343 6.808321 TGGATTAGACTAGTAATGTGGCTT 57.192 37.500 0.00 0.00 0.00 4.35
339 344 6.784969 AGATGGATTAGACTAGTAATGTGGCT 59.215 38.462 0.00 0.00 0.00 4.75
340 345 6.998802 AGATGGATTAGACTAGTAATGTGGC 58.001 40.000 0.00 0.00 0.00 5.01
452 459 9.974750 GTGTTCTAGAAGTTATTAGCAAACATC 57.025 33.333 5.12 0.00 0.00 3.06
569 578 8.689061 TGGCATAGAACTTAGTTCGTAATCTTA 58.311 33.333 17.96 5.19 45.96 2.10
578 587 3.873910 TGGCTGGCATAGAACTTAGTTC 58.126 45.455 16.56 16.56 42.25 3.01
590 599 2.374504 ACTAGATAAGCATGGCTGGCAT 59.625 45.455 11.33 11.33 39.62 4.40
742 751 6.959671 TTAAAGTTCCTTTTTGTTGCACTG 57.040 33.333 0.00 0.00 35.21 3.66
753 762 8.437575 TCTTGGACTAGTCATTAAAGTTCCTTT 58.562 33.333 23.91 0.00 37.46 3.11
783 792 3.849563 TGGTGGCACTACTTACAAGTT 57.150 42.857 18.45 0.00 40.37 2.66
819 828 5.596836 TGGATGCTTCCCAAAATCATAAC 57.403 39.130 15.62 0.00 41.83 1.89
831 840 1.203287 GGAAAGTGCTTGGATGCTTCC 59.797 52.381 11.69 11.69 42.94 3.46
859 869 9.158233 CATAATCTCTTTCACAATTGGCATTTT 57.842 29.630 10.83 0.00 0.00 1.82
909 919 6.944096 TGAGGAAGGATAATCATCATGCTAG 58.056 40.000 0.00 0.00 33.15 3.42
922 932 7.622502 TGAGAATGATGAATGAGGAAGGATA 57.377 36.000 0.00 0.00 0.00 2.59
935 945 4.304939 CGCTCTGCTTATGAGAATGATGA 58.695 43.478 0.00 0.00 33.68 2.92
951 961 0.029035 GGCTTGAATGATGCGCTCTG 59.971 55.000 9.73 0.00 0.00 3.35
965 975 1.815003 GACCACTCCTTGATTGGCTTG 59.185 52.381 0.83 0.00 36.07 4.01
973 983 5.222027 TGGATTTGTATTGACCACTCCTTGA 60.222 40.000 0.00 0.00 0.00 3.02
978 988 4.331968 TGGTGGATTTGTATTGACCACTC 58.668 43.478 0.00 0.00 46.72 3.51
1012 1022 0.106318 GCAAGGAGGGCAAGGATGAT 60.106 55.000 0.00 0.00 0.00 2.45
1064 1074 1.603678 GCAATTGTGGCACTGGAACTG 60.604 52.381 19.83 6.24 0.00 3.16
1134 1144 3.740832 GCCCTAGAAATTGTTGTTGTTGC 59.259 43.478 0.00 0.00 0.00 4.17
1226 1236 1.603678 GCAGAAATGGTTGTGGCTGTG 60.604 52.381 0.00 0.00 0.00 3.66
1227 1237 0.675633 GCAGAAATGGTTGTGGCTGT 59.324 50.000 0.00 0.00 0.00 4.40
1233 1243 2.387757 AGTTGTGGCAGAAATGGTTGT 58.612 42.857 0.00 0.00 0.00 3.32
1265 1320 1.467342 GTGGTAGAAATGGTTGCGGAC 59.533 52.381 0.00 0.00 0.00 4.79
1266 1321 1.072489 TGTGGTAGAAATGGTTGCGGA 59.928 47.619 0.00 0.00 0.00 5.54
1280 1398 4.642466 TGTGGATATGGTTGTTGTGGTA 57.358 40.909 0.00 0.00 0.00 3.25
1306 1426 1.084289 GGTTGCGGATACTGTGGTTC 58.916 55.000 0.00 0.00 0.00 3.62
1344 1470 2.122797 TTGTTGCTGCTGCTGCTGT 61.123 52.632 27.67 0.00 39.81 4.40
1425 1620 4.383649 GCTATGTTGTGTTGTTGCAAGATG 59.616 41.667 0.00 0.00 32.18 2.90
1557 1752 7.916977 TGCAGAATAATAGCATGAACAACATTC 59.083 33.333 0.00 0.00 37.07 2.67
1598 1796 5.005779 TGTTGTTGTTGTTGTTGTTGTTGTC 59.994 36.000 0.00 0.00 0.00 3.18
1686 1884 2.551270 CTCGACGGTTGTTGCTGC 59.449 61.111 0.00 0.00 0.00 5.25
1689 1926 2.954753 CTGGCTCGACGGTTGTTGC 61.955 63.158 0.00 1.98 0.00 4.17
1789 2029 2.880890 GTTGTTGATGTTGGACAGAGCT 59.119 45.455 0.00 0.00 0.00 4.09
1802 2042 4.772100 CCTCAAATTGGGGTAGTTGTTGAT 59.228 41.667 3.13 0.00 31.83 2.57
1812 2052 5.283876 TCCTTATTTCCTCAAATTGGGGT 57.716 39.130 12.23 0.00 39.64 4.95
1818 2058 6.603599 GTGCTAGGTTCCTTATTTCCTCAAAT 59.396 38.462 0.00 0.00 36.18 2.32
1842 2082 2.262915 GCTGGTAGCGTCTGCAGT 59.737 61.111 14.67 0.00 46.23 4.40
1845 2085 2.097038 CACTGCTGGTAGCGTCTGC 61.097 63.158 0.00 0.00 46.26 4.26
1857 2097 2.549064 TGTAGACATTGCACACTGCT 57.451 45.000 0.00 0.00 45.31 4.24
1861 2101 2.939103 GAGGGATGTAGACATTGCACAC 59.061 50.000 0.00 0.00 36.57 3.82
1890 2130 3.499737 GGCGCAATGGTGGTCGAG 61.500 66.667 10.83 0.00 0.00 4.04
1891 2131 3.620419 ATGGCGCAATGGTGGTCGA 62.620 57.895 10.83 0.00 0.00 4.20
1892 2132 2.211619 AAATGGCGCAATGGTGGTCG 62.212 55.000 10.83 0.00 0.00 4.79
1893 2133 0.737019 CAAATGGCGCAATGGTGGTC 60.737 55.000 10.83 0.00 0.00 4.02
1894 2134 1.292860 CAAATGGCGCAATGGTGGT 59.707 52.632 10.83 0.00 0.00 4.16
1895 2135 1.448189 CCAAATGGCGCAATGGTGG 60.448 57.895 10.83 11.68 0.00 4.61
1994 2240 6.653320 TCACTTTATTTTCTCACCGCTACAAT 59.347 34.615 0.00 0.00 0.00 2.71
2084 2330 6.879458 AGAAACAACCATATGTAGACAAGACC 59.121 38.462 1.24 0.00 32.02 3.85
2131 2377 8.747538 ATATAATTAGGGGTGAACTTGTGAAC 57.252 34.615 0.00 0.00 0.00 3.18
2300 2546 4.580167 TCTGGAATTAATTGATCAAGGGCG 59.420 41.667 14.54 0.00 0.00 6.13
2316 2562 6.605995 TGATGAATTGAATGCTTCTCTGGAAT 59.394 34.615 1.35 0.00 0.00 3.01
2400 2646 1.409064 TCATGCCGATTCGAAGTAGCT 59.591 47.619 7.83 0.00 0.00 3.32
2407 2653 1.138859 ACCTCATTCATGCCGATTCGA 59.861 47.619 7.83 0.00 0.00 3.71
2409 2655 3.496130 CAGTACCTCATTCATGCCGATTC 59.504 47.826 0.00 0.00 0.00 2.52
2455 2702 1.340991 GCCCCTTCACATTAGAGGCAA 60.341 52.381 0.00 0.00 38.79 4.52
2459 2706 1.656652 CACGCCCCTTCACATTAGAG 58.343 55.000 0.00 0.00 0.00 2.43
2463 2710 2.035626 CCCACGCCCCTTCACATT 59.964 61.111 0.00 0.00 0.00 2.71
2477 2724 1.352622 AAACACCTCTCCTGTGCCCA 61.353 55.000 0.00 0.00 37.22 5.36
2510 2757 2.202892 GGGCCCGCTTCTTACTCG 60.203 66.667 5.69 0.00 0.00 4.18
2526 2773 4.873129 CGTCCGGACCGCTGATGG 62.873 72.222 28.52 8.24 0.00 3.51
2611 2858 6.127535 CCATCCAATACGTACGGTCCTATATT 60.128 42.308 21.06 10.15 0.00 1.28
2625 2872 4.108699 ACATGTTTTGCCATCCAATACG 57.891 40.909 0.00 0.00 37.95 3.06
2626 2873 4.562394 CGAACATGTTTTGCCATCCAATAC 59.438 41.667 13.36 0.00 36.36 1.89
2627 2874 4.381398 CCGAACATGTTTTGCCATCCAATA 60.381 41.667 13.36 0.00 32.49 1.90
2628 2875 3.587923 CGAACATGTTTTGCCATCCAAT 58.412 40.909 13.36 0.00 32.49 3.16
2647 2894 2.125552 CTGCTCGCAACCATCCGA 60.126 61.111 0.00 0.00 0.00 4.55
2663 2910 7.256154 GCTATCTCTAAAGCTATCCCTCAAACT 60.256 40.741 0.00 0.00 35.80 2.66
2673 2920 7.730784 TCAAGTAAGGGCTATCTCTAAAGCTAT 59.269 37.037 0.00 0.00 38.80 2.97
2681 2928 3.310193 GGGTCAAGTAAGGGCTATCTCT 58.690 50.000 0.00 0.00 0.00 3.10
2718 2965 5.171476 CCGAGGCAAATCTATCGTCATAAT 58.829 41.667 0.00 0.00 33.43 1.28
2719 2966 4.038763 ACCGAGGCAAATCTATCGTCATAA 59.961 41.667 0.00 0.00 33.43 1.90
2721 2968 2.365617 ACCGAGGCAAATCTATCGTCAT 59.634 45.455 0.00 0.00 33.43 3.06
2731 2978 4.949856 ACATATTTCTGAACCGAGGCAAAT 59.050 37.500 0.00 0.00 0.00 2.32
2736 2983 4.122776 CCTGACATATTTCTGAACCGAGG 58.877 47.826 0.00 0.00 0.00 4.63
2826 3073 7.869016 CATGGTGAATCATGAAATATGCTTC 57.131 36.000 0.00 0.00 45.30 3.86
2857 3104 2.041081 TCCAGACCCAACATTTACCTGG 59.959 50.000 0.00 0.00 40.61 4.45
2874 3121 5.115480 GCCAAAAGAGAATAGAGTCTCCAG 58.885 45.833 0.00 0.00 44.43 3.86
2909 3156 4.275936 CGGTTCATGAAACTTTTGAGACCT 59.724 41.667 20.81 0.00 38.02 3.85
2958 3205 8.133627 CACTATGAATAAAATCAGCCAAAGAGG 58.866 37.037 0.00 0.00 41.84 3.69
2986 3233 6.687393 GCCTATGAAAATGGAGAGTCAGATCA 60.687 42.308 0.00 0.00 0.00 2.92
2987 3234 5.700373 GCCTATGAAAATGGAGAGTCAGATC 59.300 44.000 0.00 0.00 0.00 2.75
2993 3240 5.132648 TGGTATGCCTATGAAAATGGAGAGT 59.867 40.000 0.16 0.00 35.27 3.24
3141 3392 5.122396 GTGTGTATCCTTGATGTCTTTGGAC 59.878 44.000 0.00 0.00 42.42 4.02
3195 3446 2.099652 GATCGATCACCATGGCGGGA 62.100 60.000 20.52 7.80 40.22 5.14
3210 3469 3.004210 AGTGCTACAGATGCTAGTGATCG 59.996 47.826 0.00 0.00 0.00 3.69
3211 3470 4.278170 AGAGTGCTACAGATGCTAGTGATC 59.722 45.833 0.00 0.00 0.00 2.92
3224 3483 1.621814 GGTGGTGGTTAGAGTGCTACA 59.378 52.381 0.00 0.00 0.00 2.74
3240 3499 1.452145 CCGGGTGTTGTCTTTGGTGG 61.452 60.000 0.00 0.00 0.00 4.61
3245 3504 2.106857 TGGTAATCCGGGTGTTGTCTTT 59.893 45.455 0.00 0.00 36.30 2.52
3272 3531 2.604912 GGGGGTTGTTTCTGGAGAAT 57.395 50.000 0.00 0.00 33.54 2.40
3325 3584 0.178068 ACCCACGATCTTCAATCGGG 59.822 55.000 11.61 7.47 44.98 5.14
3348 3607 6.382608 GTGAGCTTGAAATTTTTCTAGGGTC 58.617 40.000 13.69 12.52 39.39 4.46
3363 3622 3.740764 GCAATGTTTTTGGGTGAGCTTGA 60.741 43.478 0.00 0.00 0.00 3.02
3403 3662 3.089284 AGCCTTTATTGGTTGTACCTGC 58.911 45.455 0.00 0.00 39.58 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.