Multiple sequence alignment - TraesCS6B01G086100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G086100 chr6B 100.000 2702 0 0 1 2702 62619406 62616705 0.000000e+00 4990.0
1 TraesCS6B01G086100 chr6B 90.630 2668 139 31 85 2702 62676983 62674377 0.000000e+00 3439.0
2 TraesCS6B01G086100 chr6B 91.149 2011 138 22 525 2507 62689146 62687148 0.000000e+00 2691.0
3 TraesCS6B01G086100 chr6B 90.451 2105 107 31 1 2061 62631363 62629309 0.000000e+00 2687.0
4 TraesCS6B01G086100 chr6B 90.936 1699 88 10 3 1694 62686231 62684592 0.000000e+00 2224.0
5 TraesCS6B01G086100 chr6B 90.818 1699 90 14 3 1694 62681612 62679973 0.000000e+00 2213.0
6 TraesCS6B01G086100 chr6B 89.882 1186 83 16 735 1900 62634174 62633006 0.000000e+00 1491.0
7 TraesCS6B01G086100 chr6B 93.809 743 39 5 1966 2702 62683088 62682347 0.000000e+00 1110.0
8 TraesCS6B01G086100 chr6B 89.325 815 56 17 1901 2700 62632952 62632154 0.000000e+00 994.0
9 TraesCS6B01G086100 chr6B 95.894 414 15 2 1966 2378 62679209 62678797 0.000000e+00 669.0
10 TraesCS6B01G086100 chr6B 88.424 406 37 5 2046 2446 62629296 62628896 5.230000e-132 481.0
11 TraesCS6B01G086100 chr6B 91.437 327 23 3 2381 2702 62678507 62678181 6.860000e-121 444.0
12 TraesCS6B01G086100 chr6B 91.437 327 23 3 2381 2702 62684581 62684255 6.860000e-121 444.0
13 TraesCS6B01G086100 chr6B 100.000 37 0 0 3 39 62677305 62677269 4.830000e-08 69.4
14 TraesCS6B01G086100 chr6A 93.959 2185 115 7 525 2702 34390947 34388773 0.000000e+00 3288.0
15 TraesCS6B01G086100 chr6A 90.650 2214 143 28 525 2702 34273563 34271378 0.000000e+00 2883.0
16 TraesCS6B01G086100 chr6A 90.720 1541 109 13 525 2044 34278377 34276850 0.000000e+00 2023.0
17 TraesCS6B01G086100 chr6A 83.810 315 31 11 198 496 34268243 34267933 5.700000e-72 281.0
18 TraesCS6B01G086100 chrUn 90.638 2179 132 37 544 2702 101984429 101982303 0.000000e+00 2828.0
19 TraesCS6B01G086100 chrUn 89.246 2055 166 31 488 2507 101987847 101985813 0.000000e+00 2519.0
20 TraesCS6B01G086100 chrUn 93.361 482 17 7 1 482 101984904 101984438 0.000000e+00 699.0
21 TraesCS6B01G086100 chrUn 89.406 387 31 3 525 905 476643163 476642781 1.880000e-131 479.0
22 TraesCS6B01G086100 chrUn 87.429 175 20 2 262 435 101981565 101981392 1.640000e-47 200.0
23 TraesCS6B01G086100 chr3B 77.627 885 115 44 1690 2526 780317743 780316894 6.820000e-126 460.0
24 TraesCS6B01G086100 chr3B 77.627 885 115 44 1690 2526 780327722 780326873 6.820000e-126 460.0
25 TraesCS6B01G086100 chr3B 84.709 327 22 9 1580 1898 780306055 780305749 4.370000e-78 302.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G086100 chr6B 62616705 62619406 2701 True 4990.000000 4990 100.000000 1 2702 1 chr6B.!!$R1 2701
1 TraesCS6B01G086100 chr6B 62674377 62689146 14769 True 1478.155556 3439 92.901111 3 2702 9 chr6B.!!$R3 2699
2 TraesCS6B01G086100 chr6B 62628896 62634174 5278 True 1413.250000 2687 89.520500 1 2700 4 chr6B.!!$R2 2699
3 TraesCS6B01G086100 chr6A 34388773 34390947 2174 True 3288.000000 3288 93.959000 525 2702 1 chr6A.!!$R1 2177
4 TraesCS6B01G086100 chr6A 34267933 34278377 10444 True 1729.000000 2883 88.393333 198 2702 3 chr6A.!!$R2 2504
5 TraesCS6B01G086100 chrUn 101981392 101987847 6455 True 1561.500000 2828 90.168500 1 2702 4 chrUn.!!$R2 2701
6 TraesCS6B01G086100 chr3B 780316894 780317743 849 True 460.000000 460 77.627000 1690 2526 1 chr3B.!!$R2 836
7 TraesCS6B01G086100 chr3B 780326873 780327722 849 True 460.000000 460 77.627000 1690 2526 1 chr3B.!!$R3 836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 454 0.094216 CGCTCGTGCAGATGAGTTTG 59.906 55.0 10.43 0.84 37.52 2.93 F
454 455 0.179205 GCTCGTGCAGATGAGTTTGC 60.179 55.0 4.26 0.00 37.52 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1572 5163 0.534203 GTCCCTCCTCGCAAACAACA 60.534 55.000 0.00 0.0 0.00 3.33 R
1984 19587 3.181427 TGGTAGGCCTAACACCATTGTTT 60.181 43.478 27.13 0.0 45.59 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.771978 GGTTGGCATCCGGTGTTT 58.228 55.556 0.00 0.00 0.00 2.83
19 20 0.524414 GGTTGGCATCCGGTGTTTAC 59.476 55.000 0.00 0.00 0.00 2.01
20 21 1.240256 GTTGGCATCCGGTGTTTACA 58.760 50.000 0.00 0.00 0.00 2.41
21 22 1.199097 GTTGGCATCCGGTGTTTACAG 59.801 52.381 0.00 0.00 0.00 2.74
22 23 0.322098 TGGCATCCGGTGTTTACAGG 60.322 55.000 0.00 0.00 42.72 4.00
29 30 4.665833 TCCGGTGTTTACAGGATCTATG 57.334 45.455 0.00 0.00 44.66 2.23
30 31 4.028131 TCCGGTGTTTACAGGATCTATGT 58.972 43.478 0.00 8.76 44.66 2.29
31 32 5.202765 TCCGGTGTTTACAGGATCTATGTA 58.797 41.667 0.00 7.09 44.66 2.29
32 33 5.836898 TCCGGTGTTTACAGGATCTATGTAT 59.163 40.000 0.00 0.00 44.66 2.29
33 34 7.005902 TCCGGTGTTTACAGGATCTATGTATA 58.994 38.462 0.00 5.38 44.66 1.47
34 35 7.506599 TCCGGTGTTTACAGGATCTATGTATAA 59.493 37.037 0.00 6.96 44.66 0.98
35 36 8.145767 CCGGTGTTTACAGGATCTATGTATAAA 58.854 37.037 10.73 4.61 43.89 1.40
36 37 9.537192 CGGTGTTTACAGGATCTATGTATAAAA 57.463 33.333 10.73 4.08 33.36 1.52
60 61 9.918630 AAATGGAAAAATTACTCAACTCTGATG 57.081 29.630 0.00 0.00 0.00 3.07
61 62 8.868522 ATGGAAAAATTACTCAACTCTGATGA 57.131 30.769 0.00 0.00 0.00 2.92
62 63 8.868522 TGGAAAAATTACTCAACTCTGATGAT 57.131 30.769 0.00 0.00 0.00 2.45
63 64 8.733458 TGGAAAAATTACTCAACTCTGATGATG 58.267 33.333 0.00 0.00 0.00 3.07
64 65 8.734386 GGAAAAATTACTCAACTCTGATGATGT 58.266 33.333 0.00 0.00 0.00 3.06
67 68 8.853077 AAATTACTCAACTCTGATGATGTTCA 57.147 30.769 0.00 0.00 0.00 3.18
68 69 8.489990 AATTACTCAACTCTGATGATGTTCAG 57.510 34.615 0.00 0.00 43.70 3.02
69 70 5.480642 ACTCAACTCTGATGATGTTCAGT 57.519 39.130 1.76 0.00 43.02 3.41
70 71 5.862845 ACTCAACTCTGATGATGTTCAGTT 58.137 37.500 1.76 0.00 43.02 3.16
71 72 5.931146 ACTCAACTCTGATGATGTTCAGTTC 59.069 40.000 1.76 0.00 43.02 3.01
72 73 5.857268 TCAACTCTGATGATGTTCAGTTCA 58.143 37.500 1.76 0.00 43.02 3.18
73 74 6.470278 TCAACTCTGATGATGTTCAGTTCAT 58.530 36.000 1.76 0.00 43.02 2.57
74 75 6.938596 TCAACTCTGATGATGTTCAGTTCATT 59.061 34.615 1.76 0.00 43.02 2.57
75 76 6.738832 ACTCTGATGATGTTCAGTTCATTG 57.261 37.500 1.76 0.00 43.02 2.82
76 77 5.646793 ACTCTGATGATGTTCAGTTCATTGG 59.353 40.000 1.76 0.00 43.02 3.16
77 78 5.563592 TCTGATGATGTTCAGTTCATTGGT 58.436 37.500 1.76 0.00 43.02 3.67
78 79 6.005823 TCTGATGATGTTCAGTTCATTGGTT 58.994 36.000 1.76 0.00 43.02 3.67
79 80 6.491062 TCTGATGATGTTCAGTTCATTGGTTT 59.509 34.615 1.76 0.00 43.02 3.27
80 81 7.665145 TCTGATGATGTTCAGTTCATTGGTTTA 59.335 33.333 1.76 0.00 43.02 2.01
81 82 7.592938 TGATGATGTTCAGTTCATTGGTTTAC 58.407 34.615 0.00 0.00 32.84 2.01
82 83 6.951062 TGATGTTCAGTTCATTGGTTTACA 57.049 33.333 0.00 0.00 0.00 2.41
83 84 7.523293 TGATGTTCAGTTCATTGGTTTACAT 57.477 32.000 0.00 0.00 0.00 2.29
84 85 8.628630 TGATGTTCAGTTCATTGGTTTACATA 57.371 30.769 0.00 0.00 0.00 2.29
85 86 8.511321 TGATGTTCAGTTCATTGGTTTACATAC 58.489 33.333 0.00 0.00 0.00 2.39
86 87 7.809546 TGTTCAGTTCATTGGTTTACATACA 57.190 32.000 0.00 0.00 0.00 2.29
87 88 8.402798 TGTTCAGTTCATTGGTTTACATACAT 57.597 30.769 0.00 0.00 0.00 2.29
88 89 9.508642 TGTTCAGTTCATTGGTTTACATACATA 57.491 29.630 0.00 0.00 0.00 2.29
89 90 9.988350 GTTCAGTTCATTGGTTTACATACATAG 57.012 33.333 0.00 0.00 0.00 2.23
90 91 9.733556 TTCAGTTCATTGGTTTACATACATAGT 57.266 29.630 0.00 0.00 0.00 2.12
91 92 9.733556 TCAGTTCATTGGTTTACATACATAGTT 57.266 29.630 0.00 0.00 0.00 2.24
92 93 9.988350 CAGTTCATTGGTTTACATACATAGTTC 57.012 33.333 0.00 0.00 0.00 3.01
93 94 9.733556 AGTTCATTGGTTTACATACATAGTTCA 57.266 29.630 0.00 0.00 0.00 3.18
94 95 9.988350 GTTCATTGGTTTACATACATAGTTCAG 57.012 33.333 0.00 0.00 0.00 3.02
95 96 9.952030 TTCATTGGTTTACATACATAGTTCAGA 57.048 29.630 0.00 0.00 0.00 3.27
96 97 9.378551 TCATTGGTTTACATACATAGTTCAGAC 57.621 33.333 0.00 0.00 0.00 3.51
97 98 9.161629 CATTGGTTTACATACATAGTTCAGACA 57.838 33.333 0.00 0.00 0.00 3.41
98 99 8.542497 TTGGTTTACATACATAGTTCAGACAC 57.458 34.615 0.00 0.00 0.00 3.67
99 100 6.809689 TGGTTTACATACATAGTTCAGACACG 59.190 38.462 0.00 0.00 0.00 4.49
100 101 6.237755 GGTTTACATACATAGTTCAGACACGC 60.238 42.308 0.00 0.00 0.00 5.34
101 102 4.720649 ACATACATAGTTCAGACACGCT 57.279 40.909 0.00 0.00 0.00 5.07
102 103 5.830000 ACATACATAGTTCAGACACGCTA 57.170 39.130 0.00 0.00 0.00 4.26
103 104 5.822278 ACATACATAGTTCAGACACGCTAG 58.178 41.667 0.00 0.00 0.00 3.42
104 105 3.152261 ACATAGTTCAGACACGCTAGC 57.848 47.619 4.06 4.06 0.00 3.42
105 106 2.159226 ACATAGTTCAGACACGCTAGCC 60.159 50.000 9.66 0.00 0.00 3.93
106 107 0.815734 TAGTTCAGACACGCTAGCCC 59.184 55.000 9.66 0.00 0.00 5.19
107 108 1.805945 GTTCAGACACGCTAGCCCG 60.806 63.158 9.66 2.48 0.00 6.13
108 109 3.642778 TTCAGACACGCTAGCCCGC 62.643 63.158 9.66 0.00 0.00 6.13
109 110 4.135153 CAGACACGCTAGCCCGCT 62.135 66.667 9.66 0.00 0.00 5.52
110 111 2.439701 AGACACGCTAGCCCGCTA 60.440 61.111 9.66 0.00 0.00 4.26
111 112 2.050350 AGACACGCTAGCCCGCTAA 61.050 57.895 9.66 0.00 0.00 3.09
112 113 1.877165 GACACGCTAGCCCGCTAAC 60.877 63.158 9.66 0.00 0.00 2.34
113 114 2.585247 CACGCTAGCCCGCTAACC 60.585 66.667 9.66 0.00 0.00 2.85
114 115 3.846430 ACGCTAGCCCGCTAACCC 61.846 66.667 9.66 0.00 0.00 4.11
115 116 4.944372 CGCTAGCCCGCTAACCCG 62.944 72.222 9.66 0.00 0.00 5.28
116 117 3.534056 GCTAGCCCGCTAACCCGA 61.534 66.667 2.29 0.00 0.00 5.14
117 118 3.085119 GCTAGCCCGCTAACCCGAA 62.085 63.158 2.29 0.00 0.00 4.30
118 119 1.067582 CTAGCCCGCTAACCCGAAG 59.932 63.158 0.00 0.00 0.00 3.79
130 131 4.722193 CCGAAGGCATGAGGTTGT 57.278 55.556 0.00 0.00 46.14 3.32
131 132 2.946947 CCGAAGGCATGAGGTTGTT 58.053 52.632 0.00 0.00 46.14 2.83
132 133 2.107950 CCGAAGGCATGAGGTTGTTA 57.892 50.000 0.00 0.00 46.14 2.41
133 134 2.643551 CCGAAGGCATGAGGTTGTTAT 58.356 47.619 0.00 0.00 46.14 1.89
134 135 2.355756 CCGAAGGCATGAGGTTGTTATG 59.644 50.000 0.00 0.00 46.14 1.90
135 136 3.009723 CGAAGGCATGAGGTTGTTATGT 58.990 45.455 0.00 0.00 0.00 2.29
136 137 3.440173 CGAAGGCATGAGGTTGTTATGTT 59.560 43.478 0.00 0.00 0.00 2.71
137 138 4.082787 CGAAGGCATGAGGTTGTTATGTTT 60.083 41.667 0.00 0.00 0.00 2.83
138 139 5.564651 CGAAGGCATGAGGTTGTTATGTTTT 60.565 40.000 0.00 0.00 0.00 2.43
139 140 5.806654 AGGCATGAGGTTGTTATGTTTTT 57.193 34.783 0.00 0.00 0.00 1.94
165 166 8.519799 TTTTTCTGTTTGAGAACTATGAGGTT 57.480 30.769 0.00 0.00 40.60 3.50
166 167 7.496529 TTTCTGTTTGAGAACTATGAGGTTG 57.503 36.000 0.00 0.00 40.60 3.77
167 168 6.174720 TCTGTTTGAGAACTATGAGGTTGT 57.825 37.500 0.00 0.00 36.70 3.32
168 169 6.591935 TCTGTTTGAGAACTATGAGGTTGTT 58.408 36.000 0.00 0.00 36.70 2.83
169 170 7.732025 TCTGTTTGAGAACTATGAGGTTGTTA 58.268 34.615 0.00 0.00 36.70 2.41
170 171 8.375506 TCTGTTTGAGAACTATGAGGTTGTTAT 58.624 33.333 0.00 0.00 36.70 1.89
171 172 8.322906 TGTTTGAGAACTATGAGGTTGTTATG 57.677 34.615 0.00 0.00 36.70 1.90
172 173 7.936847 TGTTTGAGAACTATGAGGTTGTTATGT 59.063 33.333 0.00 0.00 36.70 2.29
173 174 9.431887 GTTTGAGAACTATGAGGTTGTTATGTA 57.568 33.333 0.00 0.00 32.91 2.29
180 181 9.733556 AACTATGAGGTTGTTATGTAATTCACA 57.266 29.630 0.00 0.00 42.69 3.58
204 205 3.189568 TGTGCCTCAAACACAAGCT 57.810 47.368 0.00 0.00 44.68 3.74
205 206 1.024271 TGTGCCTCAAACACAAGCTC 58.976 50.000 0.00 0.00 44.68 4.09
206 207 0.312102 GTGCCTCAAACACAAGCTCC 59.688 55.000 0.00 0.00 37.96 4.70
207 208 0.183492 TGCCTCAAACACAAGCTCCT 59.817 50.000 0.00 0.00 0.00 3.69
208 209 1.322442 GCCTCAAACACAAGCTCCTT 58.678 50.000 0.00 0.00 0.00 3.36
209 210 1.000938 GCCTCAAACACAAGCTCCTTG 60.001 52.381 3.57 3.57 45.85 3.61
224 225 8.553459 CAAGCTCCTTGTAATAATATACTGGG 57.447 38.462 0.00 0.00 36.79 4.45
225 226 7.259088 AGCTCCTTGTAATAATATACTGGGG 57.741 40.000 0.00 0.00 0.00 4.96
226 227 6.792977 AGCTCCTTGTAATAATATACTGGGGT 59.207 38.462 0.00 0.00 0.00 4.95
227 228 7.959721 AGCTCCTTGTAATAATATACTGGGGTA 59.040 37.037 0.00 0.00 0.00 3.69
228 229 8.769359 GCTCCTTGTAATAATATACTGGGGTAT 58.231 37.037 0.00 0.00 41.10 2.73
231 232 9.174166 CCTTGTAATAATATACTGGGGTATTGC 57.826 37.037 0.00 0.00 39.19 3.56
232 233 9.959721 CTTGTAATAATATACTGGGGTATTGCT 57.040 33.333 0.00 0.00 39.19 3.91
233 234 9.953565 TTGTAATAATATACTGGGGTATTGCTC 57.046 33.333 0.00 0.00 39.19 4.26
234 235 8.545472 TGTAATAATATACTGGGGTATTGCTCC 58.455 37.037 0.00 0.00 39.19 4.70
235 236 4.929146 AATATACTGGGGTATTGCTCCC 57.071 45.455 0.00 0.00 43.90 4.30
236 237 2.514726 ATACTGGGGTATTGCTCCCT 57.485 50.000 0.00 0.00 44.07 4.20
237 238 3.648683 ATACTGGGGTATTGCTCCCTA 57.351 47.619 0.00 0.00 44.07 3.53
238 239 2.514726 ACTGGGGTATTGCTCCCTAT 57.485 50.000 0.00 0.00 44.07 2.57
239 240 3.648683 ACTGGGGTATTGCTCCCTATA 57.351 47.619 0.00 0.00 44.07 1.31
240 241 3.949430 ACTGGGGTATTGCTCCCTATAA 58.051 45.455 0.00 0.00 44.07 0.98
241 242 4.513292 ACTGGGGTATTGCTCCCTATAAT 58.487 43.478 0.00 0.00 44.07 1.28
242 243 4.920129 ACTGGGGTATTGCTCCCTATAATT 59.080 41.667 0.00 0.00 44.07 1.40
243 244 6.095680 ACTGGGGTATTGCTCCCTATAATTA 58.904 40.000 0.00 0.00 44.07 1.40
244 245 6.564927 ACTGGGGTATTGCTCCCTATAATTAA 59.435 38.462 0.00 0.00 44.07 1.40
245 246 7.241888 ACTGGGGTATTGCTCCCTATAATTAAT 59.758 37.037 0.00 0.00 44.07 1.40
246 247 8.703142 TGGGGTATTGCTCCCTATAATTAATA 57.297 34.615 0.00 0.00 44.07 0.98
247 248 8.778059 TGGGGTATTGCTCCCTATAATTAATAG 58.222 37.037 0.00 0.00 44.07 1.73
248 249 8.999895 GGGGTATTGCTCCCTATAATTAATAGA 58.000 37.037 0.96 0.00 44.07 1.98
265 266 7.553881 TTAATAGAATACCAGTTGCAGAAGC 57.446 36.000 0.00 0.00 42.57 3.86
290 291 8.692110 CAACTAAAAATTGCATATCAAGCAGA 57.308 30.769 0.00 0.00 43.75 4.26
291 292 9.309516 CAACTAAAAATTGCATATCAAGCAGAT 57.690 29.630 0.00 0.00 43.75 2.90
292 293 8.867112 ACTAAAAATTGCATATCAAGCAGATG 57.133 30.769 0.00 0.00 43.75 2.90
293 294 6.598753 AAAAATTGCATATCAAGCAGATGC 57.401 33.333 0.00 0.00 43.75 3.91
306 307 3.959573 GCAGATGCTCACCAGATAAAC 57.040 47.619 0.00 0.00 38.21 2.01
307 308 3.273434 GCAGATGCTCACCAGATAAACA 58.727 45.455 0.00 0.00 38.21 2.83
308 309 3.881688 GCAGATGCTCACCAGATAAACAT 59.118 43.478 0.00 0.00 38.21 2.71
309 310 4.261072 GCAGATGCTCACCAGATAAACATG 60.261 45.833 0.00 0.00 38.21 3.21
310 311 4.880120 CAGATGCTCACCAGATAAACATGT 59.120 41.667 0.00 0.00 0.00 3.21
311 312 5.007430 CAGATGCTCACCAGATAAACATGTC 59.993 44.000 0.00 0.00 0.00 3.06
312 313 3.609853 TGCTCACCAGATAAACATGTCC 58.390 45.455 0.00 0.00 0.00 4.02
313 314 2.945668 GCTCACCAGATAAACATGTCCC 59.054 50.000 0.00 0.00 0.00 4.46
314 315 3.370953 GCTCACCAGATAAACATGTCCCT 60.371 47.826 0.00 0.00 0.00 4.20
315 316 4.194640 CTCACCAGATAAACATGTCCCTG 58.805 47.826 0.00 4.43 0.00 4.45
316 317 3.054434 TCACCAGATAAACATGTCCCTGG 60.054 47.826 23.06 23.06 44.85 4.45
317 318 3.054434 CACCAGATAAACATGTCCCTGGA 60.054 47.826 27.73 4.08 42.69 3.86
318 319 3.591527 ACCAGATAAACATGTCCCTGGAA 59.408 43.478 27.73 3.13 42.69 3.53
319 320 3.947834 CCAGATAAACATGTCCCTGGAAC 59.052 47.826 21.49 0.00 42.69 3.62
320 321 3.947834 CAGATAAACATGTCCCTGGAACC 59.052 47.826 0.00 0.00 0.00 3.62
321 322 3.852578 AGATAAACATGTCCCTGGAACCT 59.147 43.478 0.00 0.00 0.00 3.50
322 323 2.586648 AAACATGTCCCTGGAACCTC 57.413 50.000 0.00 0.00 0.00 3.85
323 324 0.698818 AACATGTCCCTGGAACCTCC 59.301 55.000 0.00 0.00 36.96 4.30
324 325 0.475632 ACATGTCCCTGGAACCTCCA 60.476 55.000 0.00 0.00 45.98 3.86
333 334 2.200373 TGGAACCTCCAAAGCTAAGC 57.800 50.000 0.00 0.00 45.00 3.09
334 335 1.271926 TGGAACCTCCAAAGCTAAGCC 60.272 52.381 0.00 0.00 45.00 4.35
335 336 1.271926 GGAACCTCCAAAGCTAAGCCA 60.272 52.381 0.00 0.00 36.28 4.75
336 337 2.087646 GAACCTCCAAAGCTAAGCCAG 58.912 52.381 0.00 0.00 0.00 4.85
348 349 2.783135 CTAAGCCAGCTGTTCCTTTCA 58.217 47.619 13.81 0.00 0.00 2.69
349 350 2.299326 AAGCCAGCTGTTCCTTTCAT 57.701 45.000 13.81 0.00 0.00 2.57
350 351 1.831580 AGCCAGCTGTTCCTTTCATC 58.168 50.000 13.81 0.00 0.00 2.92
351 352 1.074405 AGCCAGCTGTTCCTTTCATCA 59.926 47.619 13.81 0.00 0.00 3.07
352 353 1.471684 GCCAGCTGTTCCTTTCATCAG 59.528 52.381 13.81 0.00 0.00 2.90
359 360 4.982999 CTGTTCCTTTCATCAGCAATCAG 58.017 43.478 0.00 0.00 0.00 2.90
360 361 3.192001 TGTTCCTTTCATCAGCAATCAGC 59.808 43.478 0.00 0.00 46.19 4.26
377 378 3.077617 GCAACCAGCTCCTCATCTC 57.922 57.895 0.00 0.00 41.15 2.75
378 379 0.540923 GCAACCAGCTCCTCATCTCT 59.459 55.000 0.00 0.00 41.15 3.10
379 380 1.473080 GCAACCAGCTCCTCATCTCTC 60.473 57.143 0.00 0.00 41.15 3.20
380 381 2.109774 CAACCAGCTCCTCATCTCTCT 58.890 52.381 0.00 0.00 0.00 3.10
381 382 1.779221 ACCAGCTCCTCATCTCTCTG 58.221 55.000 0.00 0.00 0.00 3.35
382 383 1.006998 ACCAGCTCCTCATCTCTCTGT 59.993 52.381 0.00 0.00 0.00 3.41
383 384 1.682854 CCAGCTCCTCATCTCTCTGTC 59.317 57.143 0.00 0.00 0.00 3.51
384 385 1.334556 CAGCTCCTCATCTCTCTGTCG 59.665 57.143 0.00 0.00 0.00 4.35
385 386 1.064758 AGCTCCTCATCTCTCTGTCGT 60.065 52.381 0.00 0.00 0.00 4.34
386 387 1.748493 GCTCCTCATCTCTCTGTCGTT 59.252 52.381 0.00 0.00 0.00 3.85
387 388 2.165437 GCTCCTCATCTCTCTGTCGTTT 59.835 50.000 0.00 0.00 0.00 3.60
388 389 3.733684 GCTCCTCATCTCTCTGTCGTTTC 60.734 52.174 0.00 0.00 0.00 2.78
389 390 3.421844 TCCTCATCTCTCTGTCGTTTCA 58.578 45.455 0.00 0.00 0.00 2.69
390 391 3.191581 TCCTCATCTCTCTGTCGTTTCAC 59.808 47.826 0.00 0.00 0.00 3.18
391 392 3.192422 CCTCATCTCTCTGTCGTTTCACT 59.808 47.826 0.00 0.00 0.00 3.41
392 393 4.396478 CCTCATCTCTCTGTCGTTTCACTA 59.604 45.833 0.00 0.00 0.00 2.74
393 394 5.067153 CCTCATCTCTCTGTCGTTTCACTAT 59.933 44.000 0.00 0.00 0.00 2.12
394 395 6.261158 CCTCATCTCTCTGTCGTTTCACTATA 59.739 42.308 0.00 0.00 0.00 1.31
395 396 7.017498 TCATCTCTCTGTCGTTTCACTATAC 57.983 40.000 0.00 0.00 0.00 1.47
396 397 6.824196 TCATCTCTCTGTCGTTTCACTATACT 59.176 38.462 0.00 0.00 0.00 2.12
397 398 6.665474 TCTCTCTGTCGTTTCACTATACTC 57.335 41.667 0.00 0.00 0.00 2.59
398 399 5.291371 TCTCTCTGTCGTTTCACTATACTCG 59.709 44.000 0.00 0.00 0.00 4.18
399 400 4.012319 TCTGTCGTTTCACTATACTCGC 57.988 45.455 0.00 0.00 0.00 5.03
400 401 3.106672 CTGTCGTTTCACTATACTCGCC 58.893 50.000 0.00 0.00 0.00 5.54
401 402 2.107178 GTCGTTTCACTATACTCGCCG 58.893 52.381 0.00 0.00 0.00 6.46
402 403 2.009051 TCGTTTCACTATACTCGCCGA 58.991 47.619 0.00 0.00 0.00 5.54
403 404 2.615447 TCGTTTCACTATACTCGCCGAT 59.385 45.455 0.00 0.00 0.00 4.18
404 405 2.971915 CGTTTCACTATACTCGCCGATC 59.028 50.000 0.00 0.00 0.00 3.69
405 406 3.303857 CGTTTCACTATACTCGCCGATCT 60.304 47.826 0.00 0.00 0.00 2.75
406 407 4.220572 GTTTCACTATACTCGCCGATCTC 58.779 47.826 0.00 0.00 0.00 2.75
407 408 3.121738 TCACTATACTCGCCGATCTCA 57.878 47.619 0.00 0.00 0.00 3.27
408 409 3.676093 TCACTATACTCGCCGATCTCAT 58.324 45.455 0.00 0.00 0.00 2.90
409 410 3.437049 TCACTATACTCGCCGATCTCATG 59.563 47.826 0.00 0.00 0.00 3.07
410 411 3.437049 CACTATACTCGCCGATCTCATGA 59.563 47.826 0.00 0.00 0.00 3.07
411 412 4.095632 CACTATACTCGCCGATCTCATGAT 59.904 45.833 0.00 0.00 35.26 2.45
412 413 3.773860 ATACTCGCCGATCTCATGATC 57.226 47.619 0.00 0.00 44.14 2.92
413 414 1.614996 ACTCGCCGATCTCATGATCT 58.385 50.000 0.00 0.00 45.10 2.75
414 415 1.959985 ACTCGCCGATCTCATGATCTT 59.040 47.619 0.00 0.00 45.10 2.40
415 416 2.288091 ACTCGCCGATCTCATGATCTTG 60.288 50.000 0.00 2.18 45.10 3.02
416 417 1.956477 TCGCCGATCTCATGATCTTGA 59.044 47.619 10.59 10.59 45.10 3.02
417 418 2.560105 TCGCCGATCTCATGATCTTGAT 59.440 45.455 11.38 0.00 45.10 2.57
418 419 3.758554 TCGCCGATCTCATGATCTTGATA 59.241 43.478 11.38 5.56 45.10 2.15
419 420 4.400567 TCGCCGATCTCATGATCTTGATAT 59.599 41.667 11.38 9.90 45.10 1.63
420 421 4.503370 CGCCGATCTCATGATCTTGATATG 59.497 45.833 11.38 1.59 45.10 1.78
421 422 5.658468 GCCGATCTCATGATCTTGATATGA 58.342 41.667 11.38 6.62 45.10 2.15
422 423 6.104665 GCCGATCTCATGATCTTGATATGAA 58.895 40.000 11.38 0.00 45.10 2.57
423 424 6.592994 GCCGATCTCATGATCTTGATATGAAA 59.407 38.462 11.38 0.00 45.10 2.69
424 425 7.412781 GCCGATCTCATGATCTTGATATGAAAC 60.413 40.741 11.38 4.98 45.10 2.78
425 426 7.064371 CCGATCTCATGATCTTGATATGAAACC 59.936 40.741 11.38 0.00 45.10 3.27
426 427 7.601508 CGATCTCATGATCTTGATATGAAACCA 59.398 37.037 11.38 0.00 45.10 3.67
427 428 9.281371 GATCTCATGATCTTGATATGAAACCAA 57.719 33.333 11.38 0.00 44.19 3.67
428 429 9.636789 ATCTCATGATCTTGATATGAAACCAAA 57.363 29.630 11.38 0.00 31.11 3.28
429 430 8.896744 TCTCATGATCTTGATATGAAACCAAAC 58.103 33.333 11.38 0.00 31.11 2.93
430 431 8.812513 TCATGATCTTGATATGAAACCAAACT 57.187 30.769 7.19 0.00 0.00 2.66
431 432 9.904198 TCATGATCTTGATATGAAACCAAACTA 57.096 29.630 7.19 0.00 0.00 2.24
432 433 9.941664 CATGATCTTGATATGAAACCAAACTAC 57.058 33.333 2.43 0.00 0.00 2.73
433 434 9.685276 ATGATCTTGATATGAAACCAAACTACA 57.315 29.630 0.00 0.00 0.00 2.74
434 435 8.946085 TGATCTTGATATGAAACCAAACTACAC 58.054 33.333 0.00 0.00 0.00 2.90
435 436 7.359262 TCTTGATATGAAACCAAACTACACG 57.641 36.000 0.00 0.00 0.00 4.49
436 437 5.539582 TGATATGAAACCAAACTACACGC 57.460 39.130 0.00 0.00 0.00 5.34
437 438 5.242434 TGATATGAAACCAAACTACACGCT 58.758 37.500 0.00 0.00 0.00 5.07
438 439 5.350365 TGATATGAAACCAAACTACACGCTC 59.650 40.000 0.00 0.00 0.00 5.03
439 440 1.862201 TGAAACCAAACTACACGCTCG 59.138 47.619 0.00 0.00 0.00 5.03
440 441 1.862827 GAAACCAAACTACACGCTCGT 59.137 47.619 0.00 0.00 0.00 4.18
449 450 3.381733 CACGCTCGTGCAGATGAG 58.618 61.111 9.55 6.24 39.39 2.90
450 451 1.445066 CACGCTCGTGCAGATGAGT 60.445 57.895 9.55 0.00 39.39 3.41
451 452 1.010935 CACGCTCGTGCAGATGAGTT 61.011 55.000 9.55 0.00 39.39 3.01
452 453 0.319900 ACGCTCGTGCAGATGAGTTT 60.320 50.000 10.43 0.00 37.52 2.66
453 454 0.094216 CGCTCGTGCAGATGAGTTTG 59.906 55.000 10.43 0.84 37.52 2.93
454 455 0.179205 GCTCGTGCAGATGAGTTTGC 60.179 55.000 4.26 0.00 37.52 3.68
455 456 1.436600 CTCGTGCAGATGAGTTTGCT 58.563 50.000 0.00 0.00 40.87 3.91
456 457 1.128136 CTCGTGCAGATGAGTTTGCTG 59.872 52.381 0.00 0.00 40.87 4.41
457 458 1.150827 CGTGCAGATGAGTTTGCTGA 58.849 50.000 0.00 0.00 40.87 4.26
458 459 1.736126 CGTGCAGATGAGTTTGCTGAT 59.264 47.619 0.00 0.00 40.87 2.90
459 460 2.931969 CGTGCAGATGAGTTTGCTGATA 59.068 45.455 0.00 0.00 40.87 2.15
460 461 3.371898 CGTGCAGATGAGTTTGCTGATAA 59.628 43.478 0.00 0.00 40.87 1.75
461 462 4.034858 CGTGCAGATGAGTTTGCTGATAAT 59.965 41.667 0.00 0.00 40.87 1.28
462 463 5.234972 CGTGCAGATGAGTTTGCTGATAATA 59.765 40.000 0.00 0.00 40.87 0.98
463 464 6.238184 CGTGCAGATGAGTTTGCTGATAATAA 60.238 38.462 0.00 0.00 40.87 1.40
464 465 6.909357 GTGCAGATGAGTTTGCTGATAATAAC 59.091 38.462 0.00 0.00 40.87 1.89
465 466 6.598850 TGCAGATGAGTTTGCTGATAATAACA 59.401 34.615 0.00 0.00 40.87 2.41
466 467 7.121020 TGCAGATGAGTTTGCTGATAATAACAA 59.879 33.333 0.00 0.00 40.87 2.83
467 468 8.133627 GCAGATGAGTTTGCTGATAATAACAAT 58.866 33.333 0.00 0.00 37.35 2.71
472 473 9.230122 TGAGTTTGCTGATAATAACAATTCAGA 57.770 29.630 3.11 0.00 38.25 3.27
473 474 9.495754 GAGTTTGCTGATAATAACAATTCAGAC 57.504 33.333 3.11 0.00 38.25 3.51
474 475 9.013229 AGTTTGCTGATAATAACAATTCAGACA 57.987 29.630 3.11 0.00 38.25 3.41
475 476 9.793252 GTTTGCTGATAATAACAATTCAGACAT 57.207 29.630 3.11 0.00 38.25 3.06
476 477 9.791820 TTTGCTGATAATAACAATTCAGACATG 57.208 29.630 3.11 0.00 38.25 3.21
477 478 8.735692 TGCTGATAATAACAATTCAGACATGA 57.264 30.769 0.00 0.00 38.25 3.07
478 479 8.615211 TGCTGATAATAACAATTCAGACATGAC 58.385 33.333 0.00 0.00 38.25 3.06
479 480 8.615211 GCTGATAATAACAATTCAGACATGACA 58.385 33.333 0.00 0.00 38.25 3.58
481 482 8.615211 TGATAATAACAATTCAGACATGACAGC 58.385 33.333 0.00 0.00 34.35 4.40
482 483 5.824904 ATAACAATTCAGACATGACAGCC 57.175 39.130 0.00 0.00 34.35 4.85
483 484 3.430042 ACAATTCAGACATGACAGCCT 57.570 42.857 0.00 0.00 34.35 4.58
484 485 3.079578 ACAATTCAGACATGACAGCCTG 58.920 45.455 0.00 0.00 34.35 4.85
485 486 3.244665 ACAATTCAGACATGACAGCCTGA 60.245 43.478 0.00 1.30 34.35 3.86
486 487 3.928005 ATTCAGACATGACAGCCTGAT 57.072 42.857 0.00 0.00 35.82 2.90
487 488 2.685850 TCAGACATGACAGCCTGATG 57.314 50.000 0.00 0.00 31.45 3.07
488 489 2.181975 TCAGACATGACAGCCTGATGA 58.818 47.619 0.00 0.00 31.45 2.92
489 490 2.770232 TCAGACATGACAGCCTGATGAT 59.230 45.455 0.00 0.00 31.45 2.45
490 491 3.962718 TCAGACATGACAGCCTGATGATA 59.037 43.478 0.00 0.00 31.45 2.15
491 492 4.406649 TCAGACATGACAGCCTGATGATAA 59.593 41.667 0.00 0.00 31.45 1.75
496 497 6.776744 ACATGACAGCCTGATGATAATATGT 58.223 36.000 0.00 0.00 0.00 2.29
512 513 8.498575 TGATAATATGTTGAACCCCTAACATGA 58.501 33.333 0.00 0.22 44.63 3.07
516 517 5.255397 TGTTGAACCCCTAACATGAATCT 57.745 39.130 0.00 0.00 32.30 2.40
517 518 5.640147 TGTTGAACCCCTAACATGAATCTT 58.360 37.500 0.00 0.00 32.30 2.40
518 519 5.476599 TGTTGAACCCCTAACATGAATCTTG 59.523 40.000 0.00 0.00 32.30 3.02
520 521 5.009631 TGAACCCCTAACATGAATCTTGTG 58.990 41.667 0.00 0.00 0.00 3.33
521 522 4.657814 ACCCCTAACATGAATCTTGTGT 57.342 40.909 0.00 0.00 0.00 3.72
522 523 5.772393 ACCCCTAACATGAATCTTGTGTA 57.228 39.130 0.00 0.00 0.00 2.90
535 537 4.193826 TCTTGTGTAGTGGATCTTGCTC 57.806 45.455 0.00 0.00 0.00 4.26
536 538 2.654749 TGTGTAGTGGATCTTGCTCG 57.345 50.000 0.00 0.00 0.00 5.03
563 565 0.739462 TAAACATGCCAGCTCCGACG 60.739 55.000 0.00 0.00 0.00 5.12
564 566 2.449031 AAACATGCCAGCTCCGACGA 62.449 55.000 0.00 0.00 0.00 4.20
565 567 2.107750 CATGCCAGCTCCGACGAT 59.892 61.111 0.00 0.00 0.00 3.73
578 4158 2.666989 GACGATGGTCGAGGCTTTC 58.333 57.895 6.34 0.00 43.74 2.62
598 4178 6.458615 GCTTTCACCTGTGATTTGCAAATTTT 60.459 34.615 24.81 4.67 39.64 1.82
622 4202 4.340617 CCACCAAGGAAAGCACCTTATTA 58.659 43.478 8.99 0.00 46.94 0.98
650 4230 5.804446 ACAGGTATGTCACAGCTAAATGCTT 60.804 40.000 0.00 0.00 42.59 3.91
753 4339 1.531149 CAGGGACAGTAGCACAAAACG 59.469 52.381 0.00 0.00 0.00 3.60
780 4366 6.805271 TGTACTAAACATGAGACGACTTAAGC 59.195 38.462 0.00 0.00 31.43 3.09
803 4389 2.034878 TGCGATCTCTATGCTTCTGGT 58.965 47.619 0.00 0.00 0.00 4.00
826 4412 3.453717 AGATCTCAAGGCATAGCAGACAA 59.546 43.478 0.00 0.00 0.00 3.18
830 4416 3.689347 TCAAGGCATAGCAGACAACATT 58.311 40.909 0.00 0.00 0.00 2.71
835 4421 2.736400 GCATAGCAGACAACATTTGGGC 60.736 50.000 0.00 0.00 34.12 5.36
935 4522 4.065088 GAGCAGTAGACACATCAAACCAA 58.935 43.478 0.00 0.00 0.00 3.67
1172 4763 5.131642 ACATCTATGATGGCCTTGAAGAGAA 59.868 40.000 3.32 0.00 0.00 2.87
1224 4815 1.425066 TCCCAGCAGAGGAACATGTTT 59.575 47.619 13.36 0.00 0.00 2.83
1241 4832 4.868172 TGTTTGATGGAGAGATGGGATT 57.132 40.909 0.00 0.00 0.00 3.01
1263 4854 4.274147 TCTCCGTTGAGCTCTTAGATCTT 58.726 43.478 16.19 0.00 38.58 2.40
1266 4857 4.220821 TCCGTTGAGCTCTTAGATCTTTGT 59.779 41.667 16.19 0.00 30.68 2.83
1294 4885 1.301677 GCAAGAGACCTTTGCCGAGG 61.302 60.000 1.14 1.14 42.75 4.63
1346 4937 5.190528 TGGCTCTAAGAAAAGGAGATGATGT 59.809 40.000 0.00 0.00 0.00 3.06
1572 5163 4.411013 AGGCATTTTACAAGAAGAAGGCT 58.589 39.130 0.00 0.00 0.00 4.58
1647 5238 2.848694 TCAGGATGGAGCAGGAATTCTT 59.151 45.455 5.23 0.00 36.16 2.52
1661 5252 7.038048 GCAGGAATTCTTTTCAGGAAATTAGG 58.962 38.462 5.23 0.00 0.00 2.69
1711 14468 7.653713 ACATTCTTAGCTCATAAATACTCCACG 59.346 37.037 0.00 0.00 0.00 4.94
1726 14483 1.911357 TCCACGTCACTCTACTCCCTA 59.089 52.381 0.00 0.00 0.00 3.53
1776 14533 6.899393 TGAGCCAATCTTGATACAGTTTTT 57.101 33.333 0.00 0.00 0.00 1.94
2025 19632 7.391620 CCTACCATAAAACTAGAAGGTTGTCA 58.608 38.462 0.00 0.00 0.00 3.58
2297 19972 6.101650 AGGTCAAGTGGAAAAATGAAATCC 57.898 37.500 0.00 0.00 0.00 3.01
2605 20296 4.760530 TGTTAGCAGAACCAGATAGCAT 57.239 40.909 0.00 0.00 0.00 3.79
2611 20302 3.259374 GCAGAACCAGATAGCATAGCCTA 59.741 47.826 0.00 0.00 0.00 3.93
2615 20306 5.841237 AGAACCAGATAGCATAGCCTAGAAA 59.159 40.000 0.00 0.00 0.00 2.52
2620 20311 6.767902 CCAGATAGCATAGCCTAGAAAAACAA 59.232 38.462 0.00 0.00 0.00 2.83
2651 20342 3.981071 TCAGTGATTCCTTACACCAGG 57.019 47.619 0.00 0.00 37.69 4.45
2662 20353 3.244911 CCTTACACCAGGAATCACCAACT 60.245 47.826 0.00 0.00 42.04 3.16
2667 20359 1.548582 CCAGGAATCACCAACTGCCTT 60.549 52.381 0.00 0.00 42.04 4.35
2676 20368 2.132996 CAACTGCCTTGGGGTGCAA 61.133 57.895 0.00 0.00 36.98 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.322098 CCTGTAAACACCGGATGCCA 60.322 55.000 9.46 0.00 0.00 4.92
4 5 0.035820 TCCTGTAAACACCGGATGCC 60.036 55.000 9.46 0.00 0.00 4.40
5 6 1.940613 GATCCTGTAAACACCGGATGC 59.059 52.381 9.46 0.00 36.44 3.91
6 7 3.543680 AGATCCTGTAAACACCGGATG 57.456 47.619 9.46 5.32 36.44 3.51
7 8 4.654262 ACATAGATCCTGTAAACACCGGAT 59.346 41.667 9.46 4.10 38.90 4.18
9 10 4.402056 ACATAGATCCTGTAAACACCGG 57.598 45.455 0.00 0.00 0.00 5.28
10 11 9.537192 TTTTATACATAGATCCTGTAAACACCG 57.463 33.333 9.17 0.00 33.12 4.94
34 35 9.918630 CATCAGAGTTGAGTAATTTTTCCATTT 57.081 29.630 0.00 0.00 36.61 2.32
35 36 9.300681 TCATCAGAGTTGAGTAATTTTTCCATT 57.699 29.630 0.00 0.00 36.61 3.16
36 37 8.868522 TCATCAGAGTTGAGTAATTTTTCCAT 57.131 30.769 0.00 0.00 36.61 3.41
37 38 8.733458 CATCATCAGAGTTGAGTAATTTTTCCA 58.267 33.333 0.00 0.00 36.61 3.53
38 39 8.734386 ACATCATCAGAGTTGAGTAATTTTTCC 58.266 33.333 0.00 0.00 36.61 3.13
41 42 9.288576 TGAACATCATCAGAGTTGAGTAATTTT 57.711 29.630 0.00 0.00 36.61 1.82
42 43 8.853077 TGAACATCATCAGAGTTGAGTAATTT 57.147 30.769 0.00 0.00 36.61 1.82
56 57 6.653526 AAACCAATGAACTGAACATCATCA 57.346 33.333 0.00 0.00 35.29 3.07
57 58 7.592938 TGTAAACCAATGAACTGAACATCATC 58.407 34.615 0.00 0.00 35.29 2.92
58 59 7.523293 TGTAAACCAATGAACTGAACATCAT 57.477 32.000 0.00 0.00 37.88 2.45
59 60 6.951062 TGTAAACCAATGAACTGAACATCA 57.049 33.333 0.00 0.00 0.00 3.07
60 61 8.511321 TGTATGTAAACCAATGAACTGAACATC 58.489 33.333 0.00 0.00 0.00 3.06
61 62 8.402798 TGTATGTAAACCAATGAACTGAACAT 57.597 30.769 0.00 0.00 0.00 2.71
62 63 7.809546 TGTATGTAAACCAATGAACTGAACA 57.190 32.000 0.00 0.00 0.00 3.18
63 64 9.988350 CTATGTATGTAAACCAATGAACTGAAC 57.012 33.333 0.00 0.00 0.00 3.18
64 65 9.733556 ACTATGTATGTAAACCAATGAACTGAA 57.266 29.630 0.00 0.00 0.00 3.02
65 66 9.733556 AACTATGTATGTAAACCAATGAACTGA 57.266 29.630 0.00 0.00 0.00 3.41
66 67 9.988350 GAACTATGTATGTAAACCAATGAACTG 57.012 33.333 0.00 0.00 0.00 3.16
67 68 9.733556 TGAACTATGTATGTAAACCAATGAACT 57.266 29.630 0.00 0.00 0.00 3.01
68 69 9.988350 CTGAACTATGTATGTAAACCAATGAAC 57.012 33.333 0.00 0.00 0.00 3.18
69 70 9.952030 TCTGAACTATGTATGTAAACCAATGAA 57.048 29.630 0.00 0.00 0.00 2.57
70 71 9.378551 GTCTGAACTATGTATGTAAACCAATGA 57.621 33.333 0.00 0.00 0.00 2.57
71 72 9.161629 TGTCTGAACTATGTATGTAAACCAATG 57.838 33.333 0.00 0.00 0.00 2.82
72 73 9.162764 GTGTCTGAACTATGTATGTAAACCAAT 57.837 33.333 0.00 0.00 0.00 3.16
73 74 7.329962 CGTGTCTGAACTATGTATGTAAACCAA 59.670 37.037 0.00 0.00 0.00 3.67
74 75 6.809689 CGTGTCTGAACTATGTATGTAAACCA 59.190 38.462 0.00 0.00 0.00 3.67
75 76 6.237755 GCGTGTCTGAACTATGTATGTAAACC 60.238 42.308 0.00 0.00 0.00 3.27
76 77 6.530534 AGCGTGTCTGAACTATGTATGTAAAC 59.469 38.462 0.00 0.00 0.00 2.01
77 78 6.627243 AGCGTGTCTGAACTATGTATGTAAA 58.373 36.000 0.00 0.00 0.00 2.01
78 79 6.203808 AGCGTGTCTGAACTATGTATGTAA 57.796 37.500 0.00 0.00 0.00 2.41
79 80 5.830000 AGCGTGTCTGAACTATGTATGTA 57.170 39.130 0.00 0.00 0.00 2.29
80 81 4.720649 AGCGTGTCTGAACTATGTATGT 57.279 40.909 0.00 0.00 0.00 2.29
81 82 4.677378 GCTAGCGTGTCTGAACTATGTATG 59.323 45.833 0.00 0.00 0.00 2.39
82 83 4.261656 GGCTAGCGTGTCTGAACTATGTAT 60.262 45.833 9.00 0.00 0.00 2.29
83 84 3.066342 GGCTAGCGTGTCTGAACTATGTA 59.934 47.826 9.00 0.00 0.00 2.29
84 85 2.159226 GGCTAGCGTGTCTGAACTATGT 60.159 50.000 9.00 0.00 0.00 2.29
85 86 2.464865 GGCTAGCGTGTCTGAACTATG 58.535 52.381 9.00 0.00 0.00 2.23
86 87 1.409427 GGGCTAGCGTGTCTGAACTAT 59.591 52.381 9.00 0.00 0.00 2.12
87 88 0.815734 GGGCTAGCGTGTCTGAACTA 59.184 55.000 9.00 0.00 0.00 2.24
88 89 1.592223 GGGCTAGCGTGTCTGAACT 59.408 57.895 9.00 0.00 0.00 3.01
89 90 1.805945 CGGGCTAGCGTGTCTGAAC 60.806 63.158 9.00 0.00 0.00 3.18
90 91 2.571757 CGGGCTAGCGTGTCTGAA 59.428 61.111 9.00 0.00 0.00 3.02
91 92 4.129737 GCGGGCTAGCGTGTCTGA 62.130 66.667 9.00 0.00 0.00 3.27
92 93 2.279502 TTAGCGGGCTAGCGTGTCTG 62.280 60.000 9.00 0.59 43.00 3.51
93 94 2.050350 TTAGCGGGCTAGCGTGTCT 61.050 57.895 9.00 5.71 43.00 3.41
94 95 1.877165 GTTAGCGGGCTAGCGTGTC 60.877 63.158 9.00 0.00 43.00 3.67
95 96 2.183555 GTTAGCGGGCTAGCGTGT 59.816 61.111 9.00 0.00 43.00 4.49
96 97 2.585247 GGTTAGCGGGCTAGCGTG 60.585 66.667 9.00 4.43 43.00 5.34
97 98 3.846430 GGGTTAGCGGGCTAGCGT 61.846 66.667 9.00 0.00 43.00 5.07
98 99 4.944372 CGGGTTAGCGGGCTAGCG 62.944 72.222 9.00 0.00 43.00 4.26
99 100 2.973180 CTTCGGGTTAGCGGGCTAGC 62.973 65.000 6.04 6.04 37.41 3.42
100 101 1.067582 CTTCGGGTTAGCGGGCTAG 59.932 63.158 0.16 0.00 0.00 3.42
101 102 2.428925 CCTTCGGGTTAGCGGGCTA 61.429 63.158 0.00 0.00 0.00 3.93
102 103 3.782443 CCTTCGGGTTAGCGGGCT 61.782 66.667 0.00 0.00 0.00 5.19
104 105 3.400599 ATGCCTTCGGGTTAGCGGG 62.401 63.158 0.00 0.00 37.45 6.13
105 106 2.180204 CATGCCTTCGGGTTAGCGG 61.180 63.158 0.00 0.00 37.45 5.52
106 107 1.153449 TCATGCCTTCGGGTTAGCG 60.153 57.895 0.00 0.00 37.45 4.26
107 108 0.815615 CCTCATGCCTTCGGGTTAGC 60.816 60.000 0.00 0.00 37.45 3.09
108 109 0.541863 ACCTCATGCCTTCGGGTTAG 59.458 55.000 0.00 0.00 37.45 2.34
109 110 0.988832 AACCTCATGCCTTCGGGTTA 59.011 50.000 0.00 0.00 38.33 2.85
110 111 0.609131 CAACCTCATGCCTTCGGGTT 60.609 55.000 0.00 0.00 40.39 4.11
111 112 1.002134 CAACCTCATGCCTTCGGGT 60.002 57.895 0.00 0.00 37.45 5.28
112 113 0.609131 AACAACCTCATGCCTTCGGG 60.609 55.000 0.00 0.00 38.37 5.14
113 114 2.107950 TAACAACCTCATGCCTTCGG 57.892 50.000 0.00 0.00 0.00 4.30
114 115 3.009723 ACATAACAACCTCATGCCTTCG 58.990 45.455 0.00 0.00 0.00 3.79
115 116 5.391312 AAACATAACAACCTCATGCCTTC 57.609 39.130 0.00 0.00 0.00 3.46
116 117 5.806654 AAAACATAACAACCTCATGCCTT 57.193 34.783 0.00 0.00 0.00 4.35
117 118 5.806654 AAAAACATAACAACCTCATGCCT 57.193 34.783 0.00 0.00 0.00 4.75
140 141 8.405531 CAACCTCATAGTTCTCAAACAGAAAAA 58.594 33.333 0.00 0.00 43.10 1.94
141 142 7.556275 ACAACCTCATAGTTCTCAAACAGAAAA 59.444 33.333 0.00 0.00 43.10 2.29
142 143 7.054124 ACAACCTCATAGTTCTCAAACAGAAA 58.946 34.615 0.00 0.00 43.10 2.52
143 144 6.591935 ACAACCTCATAGTTCTCAAACAGAA 58.408 36.000 0.00 0.00 38.95 3.02
144 145 6.174720 ACAACCTCATAGTTCTCAAACAGA 57.825 37.500 0.00 0.00 37.88 3.41
145 146 6.867662 AACAACCTCATAGTTCTCAAACAG 57.132 37.500 0.00 0.00 37.88 3.16
146 147 7.936847 ACATAACAACCTCATAGTTCTCAAACA 59.063 33.333 0.00 0.00 37.88 2.83
147 148 8.324163 ACATAACAACCTCATAGTTCTCAAAC 57.676 34.615 0.00 0.00 35.50 2.93
154 155 9.733556 TGTGAATTACATAACAACCTCATAGTT 57.266 29.630 0.00 0.00 33.42 2.24
178 179 3.384146 TGTGTTTGAGGCACATTTCATGT 59.616 39.130 0.00 0.00 46.22 3.21
179 180 3.979948 TGTGTTTGAGGCACATTTCATG 58.020 40.909 0.00 0.00 41.32 3.07
180 181 4.624015 CTTGTGTTTGAGGCACATTTCAT 58.376 39.130 0.00 0.00 44.91 2.57
181 182 3.737663 GCTTGTGTTTGAGGCACATTTCA 60.738 43.478 0.00 0.00 44.91 2.69
182 183 2.796593 GCTTGTGTTTGAGGCACATTTC 59.203 45.455 0.00 0.00 44.91 2.17
183 184 2.431782 AGCTTGTGTTTGAGGCACATTT 59.568 40.909 0.00 0.00 44.91 2.32
184 185 2.034124 AGCTTGTGTTTGAGGCACATT 58.966 42.857 0.00 0.00 44.91 2.71
185 186 1.610522 GAGCTTGTGTTTGAGGCACAT 59.389 47.619 0.00 0.00 44.91 3.21
186 187 1.024271 GAGCTTGTGTTTGAGGCACA 58.976 50.000 0.00 0.00 44.05 4.57
187 188 0.312102 GGAGCTTGTGTTTGAGGCAC 59.688 55.000 0.00 0.00 37.37 5.01
188 189 0.183492 AGGAGCTTGTGTTTGAGGCA 59.817 50.000 0.00 0.00 0.00 4.75
189 190 1.000938 CAAGGAGCTTGTGTTTGAGGC 60.001 52.381 0.00 0.00 36.79 4.70
199 200 7.607991 CCCCAGTATATTATTACAAGGAGCTTG 59.392 40.741 0.00 0.00 45.85 4.01
200 201 7.294958 ACCCCAGTATATTATTACAAGGAGCTT 59.705 37.037 0.00 0.00 0.00 3.74
201 202 6.792977 ACCCCAGTATATTATTACAAGGAGCT 59.207 38.462 0.00 0.00 0.00 4.09
202 203 7.017319 ACCCCAGTATATTATTACAAGGAGC 57.983 40.000 0.00 0.00 0.00 4.70
205 206 9.174166 GCAATACCCCAGTATATTATTACAAGG 57.826 37.037 0.00 0.00 38.27 3.61
206 207 9.959721 AGCAATACCCCAGTATATTATTACAAG 57.040 33.333 0.00 0.00 38.27 3.16
207 208 9.953565 GAGCAATACCCCAGTATATTATTACAA 57.046 33.333 0.00 0.00 38.27 2.41
208 209 8.545472 GGAGCAATACCCCAGTATATTATTACA 58.455 37.037 0.00 0.00 38.27 2.41
209 210 7.991460 GGGAGCAATACCCCAGTATATTATTAC 59.009 40.741 0.00 0.00 42.24 1.89
210 211 8.097791 GGGAGCAATACCCCAGTATATTATTA 57.902 38.462 0.00 0.00 42.24 0.98
211 212 6.970191 GGGAGCAATACCCCAGTATATTATT 58.030 40.000 0.00 0.00 42.24 1.40
212 213 6.576778 GGGAGCAATACCCCAGTATATTAT 57.423 41.667 0.00 0.00 42.24 1.28
214 215 4.929146 GGGAGCAATACCCCAGTATATT 57.071 45.455 0.00 0.00 42.24 1.28
239 240 8.624776 GCTTCTGCAACTGGTATTCTATTAATT 58.375 33.333 0.00 0.00 39.41 1.40
240 241 8.159344 GCTTCTGCAACTGGTATTCTATTAAT 57.841 34.615 0.00 0.00 39.41 1.40
241 242 7.553881 GCTTCTGCAACTGGTATTCTATTAA 57.446 36.000 0.00 0.00 39.41 1.40
265 266 8.692110 TCTGCTTGATATGCAATTTTTAGTTG 57.308 30.769 0.00 0.00 40.13 3.16
266 267 9.309516 CATCTGCTTGATATGCAATTTTTAGTT 57.690 29.630 0.00 0.00 40.13 2.24
267 268 7.437267 GCATCTGCTTGATATGCAATTTTTAGT 59.563 33.333 0.00 0.00 44.27 2.24
268 269 7.784176 GCATCTGCTTGATATGCAATTTTTAG 58.216 34.615 0.00 0.00 44.27 1.85
269 270 7.703298 GCATCTGCTTGATATGCAATTTTTA 57.297 32.000 0.00 0.00 44.27 1.52
270 271 6.598753 GCATCTGCTTGATATGCAATTTTT 57.401 33.333 0.00 0.00 44.27 1.94
286 287 3.273434 TGTTTATCTGGTGAGCATCTGC 58.727 45.455 0.00 0.00 42.49 4.26
287 288 4.880120 ACATGTTTATCTGGTGAGCATCTG 59.120 41.667 0.00 0.00 34.92 2.90
288 289 5.108187 ACATGTTTATCTGGTGAGCATCT 57.892 39.130 0.00 0.00 34.92 2.90
289 290 4.274459 GGACATGTTTATCTGGTGAGCATC 59.726 45.833 0.00 0.00 0.00 3.91
290 291 4.202441 GGACATGTTTATCTGGTGAGCAT 58.798 43.478 0.00 0.00 0.00 3.79
291 292 3.609853 GGACATGTTTATCTGGTGAGCA 58.390 45.455 0.00 0.00 0.00 4.26
292 293 2.945668 GGGACATGTTTATCTGGTGAGC 59.054 50.000 0.00 0.00 0.00 4.26
293 294 4.194640 CAGGGACATGTTTATCTGGTGAG 58.805 47.826 0.00 0.00 0.00 3.51
294 295 3.054434 CCAGGGACATGTTTATCTGGTGA 60.054 47.826 20.21 0.00 37.55 4.02
295 296 3.054434 TCCAGGGACATGTTTATCTGGTG 60.054 47.826 24.03 10.48 41.62 4.17
296 297 3.189606 TCCAGGGACATGTTTATCTGGT 58.810 45.455 24.03 0.00 41.62 4.00
297 298 3.931907 TCCAGGGACATGTTTATCTGG 57.068 47.619 21.46 21.46 42.10 3.86
298 299 3.947834 GGTTCCAGGGACATGTTTATCTG 59.052 47.826 0.00 5.83 0.00 2.90
299 300 3.852578 AGGTTCCAGGGACATGTTTATCT 59.147 43.478 0.00 0.00 0.00 1.98
300 301 4.200092 GAGGTTCCAGGGACATGTTTATC 58.800 47.826 0.00 0.00 0.00 1.75
301 302 3.053619 GGAGGTTCCAGGGACATGTTTAT 60.054 47.826 0.00 0.00 36.28 1.40
302 303 2.307686 GGAGGTTCCAGGGACATGTTTA 59.692 50.000 0.00 0.00 36.28 2.01
303 304 1.075536 GGAGGTTCCAGGGACATGTTT 59.924 52.381 0.00 0.00 36.28 2.83
304 305 0.698818 GGAGGTTCCAGGGACATGTT 59.301 55.000 0.00 0.00 36.28 2.71
305 306 0.475632 TGGAGGTTCCAGGGACATGT 60.476 55.000 0.00 0.00 42.67 3.21
306 307 2.386864 TGGAGGTTCCAGGGACATG 58.613 57.895 0.00 0.00 42.67 3.21
314 315 1.271926 GGCTTAGCTTTGGAGGTTCCA 60.272 52.381 3.59 0.00 46.61 3.53
315 316 1.271926 TGGCTTAGCTTTGGAGGTTCC 60.272 52.381 3.59 0.00 36.96 3.62
316 317 2.087646 CTGGCTTAGCTTTGGAGGTTC 58.912 52.381 3.59 0.00 34.88 3.62
317 318 2.206576 CTGGCTTAGCTTTGGAGGTT 57.793 50.000 3.59 0.00 34.88 3.50
318 319 3.965888 CTGGCTTAGCTTTGGAGGT 57.034 52.632 3.59 0.00 37.40 3.85
328 329 2.783135 TGAAAGGAACAGCTGGCTTAG 58.217 47.619 19.93 0.00 0.00 2.18
329 330 2.949177 TGAAAGGAACAGCTGGCTTA 57.051 45.000 19.93 0.00 0.00 3.09
330 331 2.165998 GATGAAAGGAACAGCTGGCTT 58.834 47.619 19.93 3.59 0.00 4.35
331 332 1.074405 TGATGAAAGGAACAGCTGGCT 59.926 47.619 19.93 4.18 0.00 4.75
332 333 1.471684 CTGATGAAAGGAACAGCTGGC 59.528 52.381 19.93 9.55 0.00 4.85
337 338 4.674623 GCTGATTGCTGATGAAAGGAACAG 60.675 45.833 0.00 0.00 38.95 3.16
338 339 3.192001 GCTGATTGCTGATGAAAGGAACA 59.808 43.478 0.00 0.00 38.95 3.18
339 340 3.192001 TGCTGATTGCTGATGAAAGGAAC 59.808 43.478 0.00 0.00 43.37 3.62
340 341 3.423749 TGCTGATTGCTGATGAAAGGAA 58.576 40.909 0.00 0.00 43.37 3.36
341 342 3.076079 TGCTGATTGCTGATGAAAGGA 57.924 42.857 0.00 0.00 43.37 3.36
342 343 3.508762 GTTGCTGATTGCTGATGAAAGG 58.491 45.455 0.00 0.00 43.37 3.11
343 344 3.057104 TGGTTGCTGATTGCTGATGAAAG 60.057 43.478 0.00 0.00 43.37 2.62
344 345 2.892215 TGGTTGCTGATTGCTGATGAAA 59.108 40.909 0.00 0.00 43.37 2.69
345 346 2.490509 CTGGTTGCTGATTGCTGATGAA 59.509 45.455 0.00 0.00 43.37 2.57
346 347 2.089201 CTGGTTGCTGATTGCTGATGA 58.911 47.619 0.00 0.00 43.37 2.92
347 348 1.469251 GCTGGTTGCTGATTGCTGATG 60.469 52.381 0.00 0.00 43.37 3.07
348 349 0.815734 GCTGGTTGCTGATTGCTGAT 59.184 50.000 0.00 0.00 43.37 2.90
349 350 2.260247 GCTGGTTGCTGATTGCTGA 58.740 52.632 0.00 0.00 43.37 4.26
350 351 4.883026 GCTGGTTGCTGATTGCTG 57.117 55.556 0.00 0.00 43.37 4.41
359 360 0.540923 AGAGATGAGGAGCTGGTTGC 59.459 55.000 0.00 0.00 43.29 4.17
360 361 2.109774 AGAGAGATGAGGAGCTGGTTG 58.890 52.381 0.00 0.00 0.00 3.77
361 362 2.109774 CAGAGAGATGAGGAGCTGGTT 58.890 52.381 0.00 0.00 0.00 3.67
362 363 1.006998 ACAGAGAGATGAGGAGCTGGT 59.993 52.381 0.00 0.00 0.00 4.00
363 364 1.682854 GACAGAGAGATGAGGAGCTGG 59.317 57.143 0.00 0.00 0.00 4.85
364 365 1.334556 CGACAGAGAGATGAGGAGCTG 59.665 57.143 0.00 0.00 0.00 4.24
365 366 1.064758 ACGACAGAGAGATGAGGAGCT 60.065 52.381 0.00 0.00 0.00 4.09
366 367 1.388547 ACGACAGAGAGATGAGGAGC 58.611 55.000 0.00 0.00 0.00 4.70
367 368 3.441922 TGAAACGACAGAGAGATGAGGAG 59.558 47.826 0.00 0.00 0.00 3.69
368 369 3.191581 GTGAAACGACAGAGAGATGAGGA 59.808 47.826 0.00 0.00 0.00 3.71
369 370 3.192422 AGTGAAACGACAGAGAGATGAGG 59.808 47.826 0.00 0.00 45.86 3.86
370 371 4.433186 AGTGAAACGACAGAGAGATGAG 57.567 45.455 0.00 0.00 45.86 2.90
371 372 6.824196 AGTATAGTGAAACGACAGAGAGATGA 59.176 38.462 0.00 0.00 45.86 2.92
372 373 7.022055 AGTATAGTGAAACGACAGAGAGATG 57.978 40.000 0.00 0.00 45.86 2.90
373 374 6.018588 CGAGTATAGTGAAACGACAGAGAGAT 60.019 42.308 0.00 0.00 45.86 2.75
374 375 5.291371 CGAGTATAGTGAAACGACAGAGAGA 59.709 44.000 0.00 0.00 45.86 3.10
375 376 5.494618 CGAGTATAGTGAAACGACAGAGAG 58.505 45.833 0.00 0.00 45.86 3.20
376 377 4.201792 GCGAGTATAGTGAAACGACAGAGA 60.202 45.833 0.00 0.00 45.86 3.10
377 378 4.029704 GCGAGTATAGTGAAACGACAGAG 58.970 47.826 0.00 0.00 45.86 3.35
378 379 3.181503 GGCGAGTATAGTGAAACGACAGA 60.182 47.826 0.00 0.00 45.86 3.41
379 380 3.106672 GGCGAGTATAGTGAAACGACAG 58.893 50.000 0.00 0.00 45.86 3.51
380 381 2.476686 CGGCGAGTATAGTGAAACGACA 60.477 50.000 0.00 0.00 45.86 4.35
381 382 2.107178 CGGCGAGTATAGTGAAACGAC 58.893 52.381 0.00 0.00 45.86 4.34
382 383 2.009051 TCGGCGAGTATAGTGAAACGA 58.991 47.619 4.99 0.00 45.86 3.85
383 384 2.463553 TCGGCGAGTATAGTGAAACG 57.536 50.000 4.99 0.00 45.86 3.60
384 385 4.220572 GAGATCGGCGAGTATAGTGAAAC 58.779 47.826 17.22 0.00 0.00 2.78
385 386 3.881089 TGAGATCGGCGAGTATAGTGAAA 59.119 43.478 17.22 0.00 0.00 2.69
386 387 3.473625 TGAGATCGGCGAGTATAGTGAA 58.526 45.455 17.22 0.00 0.00 3.18
387 388 3.121738 TGAGATCGGCGAGTATAGTGA 57.878 47.619 17.22 0.00 0.00 3.41
388 389 3.437049 TCATGAGATCGGCGAGTATAGTG 59.563 47.826 17.22 9.90 0.00 2.74
389 390 3.676093 TCATGAGATCGGCGAGTATAGT 58.324 45.455 17.22 0.00 0.00 2.12
390 391 4.843147 GATCATGAGATCGGCGAGTATAG 58.157 47.826 17.22 3.70 41.12 1.31
391 392 4.884458 GATCATGAGATCGGCGAGTATA 57.116 45.455 17.22 2.20 41.12 1.47
392 393 3.773860 GATCATGAGATCGGCGAGTAT 57.226 47.619 17.22 2.97 41.12 2.12
402 403 9.636789 TTTGGTTTCATATCAAGATCATGAGAT 57.363 29.630 6.79 4.53 37.13 2.75
403 404 8.896744 GTTTGGTTTCATATCAAGATCATGAGA 58.103 33.333 6.79 2.03 31.76 3.27
404 405 8.900781 AGTTTGGTTTCATATCAAGATCATGAG 58.099 33.333 6.79 0.00 31.76 2.90
405 406 8.812513 AGTTTGGTTTCATATCAAGATCATGA 57.187 30.769 2.64 2.64 0.00 3.07
406 407 9.941664 GTAGTTTGGTTTCATATCAAGATCATG 57.058 33.333 0.00 0.00 0.00 3.07
407 408 9.685276 TGTAGTTTGGTTTCATATCAAGATCAT 57.315 29.630 0.00 0.00 0.00 2.45
408 409 8.946085 GTGTAGTTTGGTTTCATATCAAGATCA 58.054 33.333 0.00 0.00 0.00 2.92
409 410 8.116753 CGTGTAGTTTGGTTTCATATCAAGATC 58.883 37.037 0.00 0.00 0.00 2.75
410 411 7.414098 GCGTGTAGTTTGGTTTCATATCAAGAT 60.414 37.037 0.00 0.00 0.00 2.40
411 412 6.128391 GCGTGTAGTTTGGTTTCATATCAAGA 60.128 38.462 0.00 0.00 0.00 3.02
412 413 6.021596 GCGTGTAGTTTGGTTTCATATCAAG 58.978 40.000 0.00 0.00 0.00 3.02
413 414 5.703592 AGCGTGTAGTTTGGTTTCATATCAA 59.296 36.000 0.00 0.00 0.00 2.57
414 415 5.242434 AGCGTGTAGTTTGGTTTCATATCA 58.758 37.500 0.00 0.00 0.00 2.15
415 416 5.500290 CGAGCGTGTAGTTTGGTTTCATATC 60.500 44.000 0.00 0.00 0.00 1.63
416 417 4.328983 CGAGCGTGTAGTTTGGTTTCATAT 59.671 41.667 0.00 0.00 0.00 1.78
417 418 3.676172 CGAGCGTGTAGTTTGGTTTCATA 59.324 43.478 0.00 0.00 0.00 2.15
418 419 2.478894 CGAGCGTGTAGTTTGGTTTCAT 59.521 45.455 0.00 0.00 0.00 2.57
419 420 1.862201 CGAGCGTGTAGTTTGGTTTCA 59.138 47.619 0.00 0.00 0.00 2.69
420 421 1.862827 ACGAGCGTGTAGTTTGGTTTC 59.137 47.619 0.00 0.00 0.00 2.78
421 422 1.595794 CACGAGCGTGTAGTTTGGTTT 59.404 47.619 14.36 0.00 40.91 3.27
422 423 1.214367 CACGAGCGTGTAGTTTGGTT 58.786 50.000 14.36 0.00 40.91 3.67
423 424 1.219522 GCACGAGCGTGTAGTTTGGT 61.220 55.000 22.06 0.00 46.90 3.67
424 425 1.218875 TGCACGAGCGTGTAGTTTGG 61.219 55.000 22.06 0.00 46.90 3.28
425 426 2.221676 TGCACGAGCGTGTAGTTTG 58.778 52.632 22.06 0.00 46.90 2.93
426 427 4.742274 TGCACGAGCGTGTAGTTT 57.258 50.000 22.06 0.00 46.90 2.66
430 431 0.179163 CTCATCTGCACGAGCGTGTA 60.179 55.000 22.06 17.55 46.90 2.90
431 432 1.445066 CTCATCTGCACGAGCGTGT 60.445 57.895 22.06 1.73 46.90 4.49
433 434 0.319900 AAACTCATCTGCACGAGCGT 60.320 50.000 0.00 0.00 46.23 5.07
434 435 0.094216 CAAACTCATCTGCACGAGCG 59.906 55.000 0.00 0.00 46.23 5.03
435 436 0.179205 GCAAACTCATCTGCACGAGC 60.179 55.000 0.00 0.00 38.48 5.03
436 437 1.128136 CAGCAAACTCATCTGCACGAG 59.872 52.381 0.00 2.27 41.17 4.18
437 438 1.150827 CAGCAAACTCATCTGCACGA 58.849 50.000 0.00 0.00 41.17 4.35
438 439 1.150827 TCAGCAAACTCATCTGCACG 58.849 50.000 0.00 0.00 41.17 5.34
439 440 4.952262 TTATCAGCAAACTCATCTGCAC 57.048 40.909 0.00 0.00 41.17 4.57
440 441 6.598850 TGTTATTATCAGCAAACTCATCTGCA 59.401 34.615 0.00 0.00 41.17 4.41
441 442 7.019774 TGTTATTATCAGCAAACTCATCTGC 57.980 36.000 0.00 0.00 38.91 4.26
446 447 9.230122 TCTGAATTGTTATTATCAGCAAACTCA 57.770 29.630 0.00 0.00 39.27 3.41
447 448 9.495754 GTCTGAATTGTTATTATCAGCAAACTC 57.504 33.333 0.00 0.00 39.27 3.01
448 449 9.013229 TGTCTGAATTGTTATTATCAGCAAACT 57.987 29.630 0.00 0.00 39.27 2.66
449 450 9.793252 ATGTCTGAATTGTTATTATCAGCAAAC 57.207 29.630 0.00 0.00 39.27 2.93
450 451 9.791820 CATGTCTGAATTGTTATTATCAGCAAA 57.208 29.630 0.00 0.00 39.27 3.68
451 452 9.176460 TCATGTCTGAATTGTTATTATCAGCAA 57.824 29.630 0.00 0.00 39.27 3.91
452 453 8.615211 GTCATGTCTGAATTGTTATTATCAGCA 58.385 33.333 0.00 0.00 39.27 4.41
453 454 8.615211 TGTCATGTCTGAATTGTTATTATCAGC 58.385 33.333 0.00 0.00 39.27 4.26
455 456 8.615211 GCTGTCATGTCTGAATTGTTATTATCA 58.385 33.333 1.22 0.00 31.85 2.15
456 457 8.072567 GGCTGTCATGTCTGAATTGTTATTATC 58.927 37.037 1.22 0.00 31.85 1.75
457 458 7.776969 AGGCTGTCATGTCTGAATTGTTATTAT 59.223 33.333 1.22 0.00 31.85 1.28
458 459 7.066163 CAGGCTGTCATGTCTGAATTGTTATTA 59.934 37.037 6.28 0.00 41.78 0.98
459 460 5.948162 AGGCTGTCATGTCTGAATTGTTATT 59.052 36.000 1.22 0.00 31.85 1.40
460 461 5.356190 CAGGCTGTCATGTCTGAATTGTTAT 59.644 40.000 6.28 0.00 41.78 1.89
461 462 4.696877 CAGGCTGTCATGTCTGAATTGTTA 59.303 41.667 6.28 0.00 41.78 2.41
462 463 3.504906 CAGGCTGTCATGTCTGAATTGTT 59.495 43.478 6.28 0.00 41.78 2.83
463 464 3.079578 CAGGCTGTCATGTCTGAATTGT 58.920 45.455 6.28 0.00 41.78 2.71
464 465 3.340928 TCAGGCTGTCATGTCTGAATTG 58.659 45.455 15.27 0.00 44.47 2.32
465 466 3.708403 TCAGGCTGTCATGTCTGAATT 57.292 42.857 15.27 0.00 44.47 2.17
469 470 2.685850 TCATCAGGCTGTCATGTCTG 57.314 50.000 15.27 2.69 40.70 3.51
470 471 5.563876 ATTATCATCAGGCTGTCATGTCT 57.436 39.130 15.27 6.79 0.00 3.41
471 472 6.877855 ACATATTATCATCAGGCTGTCATGTC 59.122 38.462 15.27 0.00 0.00 3.06
472 473 6.776744 ACATATTATCATCAGGCTGTCATGT 58.223 36.000 15.27 9.93 0.00 3.21
473 474 7.389607 TCAACATATTATCATCAGGCTGTCATG 59.610 37.037 15.27 11.88 0.00 3.07
474 475 7.455891 TCAACATATTATCATCAGGCTGTCAT 58.544 34.615 15.27 7.52 0.00 3.06
475 476 6.829849 TCAACATATTATCATCAGGCTGTCA 58.170 36.000 15.27 0.00 0.00 3.58
476 477 7.308229 GGTTCAACATATTATCATCAGGCTGTC 60.308 40.741 15.27 0.00 0.00 3.51
477 478 6.488006 GGTTCAACATATTATCATCAGGCTGT 59.512 38.462 15.27 0.00 0.00 4.40
478 479 6.072286 GGGTTCAACATATTATCATCAGGCTG 60.072 42.308 8.58 8.58 0.00 4.85
479 480 6.006449 GGGTTCAACATATTATCATCAGGCT 58.994 40.000 0.00 0.00 0.00 4.58
480 481 5.183904 GGGGTTCAACATATTATCATCAGGC 59.816 44.000 0.00 0.00 0.00 4.85
481 482 6.546484 AGGGGTTCAACATATTATCATCAGG 58.454 40.000 0.00 0.00 0.00 3.86
482 483 9.003658 GTTAGGGGTTCAACATATTATCATCAG 57.996 37.037 0.00 0.00 0.00 2.90
483 484 8.498575 TGTTAGGGGTTCAACATATTATCATCA 58.501 33.333 0.00 0.00 29.93 3.07
484 485 8.918202 TGTTAGGGGTTCAACATATTATCATC 57.082 34.615 0.00 0.00 29.93 2.92
485 486 9.300681 CATGTTAGGGGTTCAACATATTATCAT 57.699 33.333 0.04 0.00 42.09 2.45
486 487 8.498575 TCATGTTAGGGGTTCAACATATTATCA 58.501 33.333 0.04 0.00 42.09 2.15
487 488 8.918202 TCATGTTAGGGGTTCAACATATTATC 57.082 34.615 0.04 0.00 42.09 1.75
488 489 9.881773 ATTCATGTTAGGGGTTCAACATATTAT 57.118 29.630 0.04 0.00 42.09 1.28
489 490 9.349713 GATTCATGTTAGGGGTTCAACATATTA 57.650 33.333 0.04 0.00 42.09 0.98
490 491 8.061304 AGATTCATGTTAGGGGTTCAACATATT 58.939 33.333 0.04 0.00 42.09 1.28
491 492 7.586349 AGATTCATGTTAGGGGTTCAACATAT 58.414 34.615 0.04 0.00 42.09 1.78
496 497 5.476599 CACAAGATTCATGTTAGGGGTTCAA 59.523 40.000 0.00 0.00 0.00 2.69
512 513 5.171339 AGCAAGATCCACTACACAAGATT 57.829 39.130 0.00 0.00 0.00 2.40
516 517 2.930887 GCGAGCAAGATCCACTACACAA 60.931 50.000 0.00 0.00 0.00 3.33
517 518 1.404181 GCGAGCAAGATCCACTACACA 60.404 52.381 0.00 0.00 0.00 3.72
518 519 1.281899 GCGAGCAAGATCCACTACAC 58.718 55.000 0.00 0.00 0.00 2.90
520 521 1.863454 CATGCGAGCAAGATCCACTAC 59.137 52.381 0.57 0.00 0.00 2.73
521 522 1.202568 CCATGCGAGCAAGATCCACTA 60.203 52.381 0.57 0.00 0.00 2.74
522 523 0.463295 CCATGCGAGCAAGATCCACT 60.463 55.000 0.57 0.00 0.00 4.00
563 565 0.250513 AGGTGAAAGCCTCGACCATC 59.749 55.000 0.00 0.00 32.39 3.51
564 566 0.036010 CAGGTGAAAGCCTCGACCAT 60.036 55.000 0.00 0.00 36.58 3.55
565 567 1.371183 CAGGTGAAAGCCTCGACCA 59.629 57.895 0.00 0.00 36.58 4.02
578 4158 4.213906 GGGAAAATTTGCAAATCACAGGTG 59.786 41.667 24.28 0.00 0.00 4.00
598 4178 1.152830 GGTGCTTTCCTTGGTGGGA 59.847 57.895 0.00 0.00 36.20 4.37
612 4192 8.557029 GTGACATACCTGTATTTAATAAGGTGC 58.443 37.037 19.47 11.68 42.96 5.01
622 4202 7.201732 GCATTTAGCTGTGACATACCTGTATTT 60.202 37.037 0.00 0.00 41.15 1.40
668 4248 1.035385 TTGCATGCTCAGGCCATCAG 61.035 55.000 20.33 0.00 37.30 2.90
670 4250 0.750546 TCTTGCATGCTCAGGCCATC 60.751 55.000 20.33 0.00 37.30 3.51
726 4306 1.220206 CTACTGTCCCTGGCAGCAG 59.780 63.158 9.56 13.62 37.47 4.24
753 4339 8.906636 TTAAGTCGTCTCATGTTTAGTACATC 57.093 34.615 0.00 0.00 45.71 3.06
777 4363 0.943359 GCATAGAGATCGCAGCGCTT 60.943 55.000 7.50 0.00 0.00 4.68
780 4366 1.059173 GAAGCATAGAGATCGCAGCG 58.941 55.000 9.06 9.06 0.00 5.18
803 4389 4.218312 TGTCTGCTATGCCTTGAGATCTA 58.782 43.478 0.00 0.00 0.00 1.98
826 4412 1.408702 GCCATTACATCGCCCAAATGT 59.591 47.619 0.00 0.00 40.37 2.71
830 4416 1.031235 CATGCCATTACATCGCCCAA 58.969 50.000 0.00 0.00 0.00 4.12
856 4442 6.293955 GCGGTAGCATTTGATTGGTATACATT 60.294 38.462 5.01 0.00 44.35 2.71
879 4465 9.755064 GCCTATTTATACATAAATGTACAAGCG 57.245 33.333 14.64 0.00 45.11 4.68
935 4522 4.384940 GAGGAGCAGAAAAGAACACTTCT 58.615 43.478 0.00 0.00 43.15 2.85
1075 4666 4.281688 AGAGATGCTTGATTCTAGGCTCTC 59.718 45.833 0.00 0.00 33.53 3.20
1087 4678 4.521146 GAATTGGAGGAAGAGATGCTTGA 58.479 43.478 0.00 0.00 36.83 3.02
1125 4716 1.552337 GCAAGACTCCTGAGACCATCA 59.448 52.381 0.22 0.00 36.21 3.07
1241 4832 3.892284 AGATCTAAGAGCTCAACGGAGA 58.108 45.455 17.77 10.58 44.26 3.71
1263 4854 2.426522 GTCTCTTGCATGGTGCTACAA 58.573 47.619 3.41 0.00 45.31 2.41
1266 4857 1.279496 AGGTCTCTTGCATGGTGCTA 58.721 50.000 3.41 0.00 45.31 3.49
1294 4885 2.636830 CTCTTGGATGATGACCACCAC 58.363 52.381 0.00 0.00 37.13 4.16
1572 5163 0.534203 GTCCCTCCTCGCAAACAACA 60.534 55.000 0.00 0.00 0.00 3.33
1647 5238 4.735369 TGTTCTGGCCTAATTTCCTGAAA 58.265 39.130 3.32 0.00 40.41 2.69
1661 5252 7.387948 TGTTTAATAGAGAAACTCTGTTCTGGC 59.612 37.037 12.50 5.24 40.23 4.85
1711 14468 3.315749 CCAATCGTAGGGAGTAGAGTGAC 59.684 52.174 0.00 0.00 31.30 3.67
1747 14504 4.409901 TGTATCAAGATTGGCTCATCCTCA 59.590 41.667 0.00 0.00 35.26 3.86
1759 14516 8.181904 ACACATGGAAAAACTGTATCAAGATT 57.818 30.769 0.00 0.00 0.00 2.40
1984 19587 3.181427 TGGTAGGCCTAACACCATTGTTT 60.181 43.478 27.13 0.00 45.59 2.83
2065 19715 7.734924 TGCATGATAAGTGAGATCCATAAAC 57.265 36.000 0.00 0.00 0.00 2.01
2389 20069 9.902684 ATGCTCAATCCAATATTTATCTCCTAG 57.097 33.333 0.00 0.00 0.00 3.02
2605 20296 8.630054 TTTAATCAGCTTGTTTTTCTAGGCTA 57.370 30.769 0.00 0.00 0.00 3.93
2662 20353 1.152376 TCATTTGCACCCCAAGGCA 60.152 52.632 0.00 0.00 38.46 4.75
2676 20368 8.177119 TCTTAATTGTTAGTGGCAAACTCATT 57.823 30.769 3.92 5.02 40.56 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.