Multiple sequence alignment - TraesCS6B01G085800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G085800 chr6B 100.000 2639 0 0 1 2639 62222259 62224897 0.000000e+00 4874.0
1 TraesCS6B01G085800 chr6B 84.005 769 90 28 875 1621 79036467 79037224 0.000000e+00 708.0
2 TraesCS6B01G085800 chr6B 77.912 661 112 32 977 1620 26291280 26291923 5.330000e-102 381.0
3 TraesCS6B01G085800 chr6B 76.839 639 104 36 977 1595 13934112 13933498 1.180000e-83 320.0
4 TraesCS6B01G085800 chr6B 81.847 314 51 6 1620 1930 79037578 79037888 2.610000e-65 259.0
5 TraesCS6B01G085800 chr6D 87.729 1418 135 22 1 1409 28624775 28623388 0.000000e+00 1618.0
6 TraesCS6B01G085800 chr6D 78.699 615 117 14 1620 2224 8246436 8247046 5.290000e-107 398.0
7 TraesCS6B01G085800 chr6D 79.143 537 79 24 974 1501 7999090 7998578 9.050000e-90 340.0
8 TraesCS6B01G085800 chr6D 81.000 300 53 4 1642 1939 8401679 8401382 4.390000e-58 235.0
9 TraesCS6B01G085800 chr6D 80.186 323 56 7 1621 1939 8895012 8895330 4.390000e-58 235.0
10 TraesCS6B01G085800 chrUn 83.980 799 98 21 844 1621 27946328 27945539 0.000000e+00 739.0
11 TraesCS6B01G085800 chrUn 81.734 323 53 6 1620 1939 27945185 27944866 5.600000e-67 265.0
12 TraesCS6B01G085800 chrUn 73.727 373 88 9 328 693 322969948 322969579 1.270000e-28 137.0
13 TraesCS6B01G085800 chrUn 73.727 373 88 9 328 693 322979620 322979251 1.270000e-28 137.0
14 TraesCS6B01G085800 chrUn 73.727 373 88 9 328 693 338434469 338434838 1.270000e-28 137.0
15 TraesCS6B01G085800 chrUn 86.765 68 4 4 1143 1206 82521981 82521915 1.310000e-08 71.3
16 TraesCS6B01G085800 chr6A 83.313 833 103 15 3 832 34075434 34076233 0.000000e+00 736.0
17 TraesCS6B01G085800 chr6A 85.655 481 58 4 1149 1621 34146244 34146721 1.820000e-136 496.0
18 TraesCS6B01G085800 chr6A 77.985 536 96 15 1097 1623 10511077 10510555 1.520000e-82 316.0
19 TraesCS6B01G085800 chr6A 94.828 174 9 0 1620 1793 34147075 34147248 3.350000e-69 272.0
20 TraesCS6B01G085800 chr6A 77.273 198 37 7 342 536 20805267 20805075 2.780000e-20 110.0
21 TraesCS6B01G085800 chr5A 75.535 748 151 22 47 776 104215874 104215141 3.250000e-89 339.0
22 TraesCS6B01G085800 chr1B 81.063 301 51 6 1642 1939 630645727 630646024 4.390000e-58 235.0
23 TraesCS6B01G085800 chr1B 78.302 318 52 11 1621 1930 630650492 630650800 3.470000e-44 189.0
24 TraesCS6B01G085800 chr1B 83.444 151 22 3 1702 1851 662059466 662059614 1.270000e-28 137.0
25 TraesCS6B01G085800 chr5D 75.292 514 85 18 65 550 251937952 251938451 9.570000e-50 207.0
26 TraesCS6B01G085800 chr5D 79.004 281 56 2 499 776 251938648 251938928 3.470000e-44 189.0
27 TraesCS6B01G085800 chr2D 74.088 548 103 19 234 776 553982902 553983415 3.470000e-44 189.0
28 TraesCS6B01G085800 chr7D 75.585 299 63 8 277 570 42200484 42200777 3.540000e-29 139.0
29 TraesCS6B01G085800 chr5B 78.947 152 32 0 433 584 493133149 493132998 1.290000e-18 104.0
30 TraesCS6B01G085800 chr2B 76.923 169 37 2 330 496 85004555 85004387 7.780000e-16 95.3
31 TraesCS6B01G085800 chr4D 88.732 71 8 0 706 776 190498000 190498070 1.300000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G085800 chr6B 62222259 62224897 2638 False 4874.0 4874 100.0000 1 2639 1 chr6B.!!$F2 2638
1 TraesCS6B01G085800 chr6B 79036467 79037888 1421 False 483.5 708 82.9260 875 1930 2 chr6B.!!$F3 1055
2 TraesCS6B01G085800 chr6B 26291280 26291923 643 False 381.0 381 77.9120 977 1620 1 chr6B.!!$F1 643
3 TraesCS6B01G085800 chr6B 13933498 13934112 614 True 320.0 320 76.8390 977 1595 1 chr6B.!!$R1 618
4 TraesCS6B01G085800 chr6D 28623388 28624775 1387 True 1618.0 1618 87.7290 1 1409 1 chr6D.!!$R3 1408
5 TraesCS6B01G085800 chr6D 8246436 8247046 610 False 398.0 398 78.6990 1620 2224 1 chr6D.!!$F1 604
6 TraesCS6B01G085800 chr6D 7998578 7999090 512 True 340.0 340 79.1430 974 1501 1 chr6D.!!$R1 527
7 TraesCS6B01G085800 chrUn 27944866 27946328 1462 True 502.0 739 82.8570 844 1939 2 chrUn.!!$R4 1095
8 TraesCS6B01G085800 chr6A 34075434 34076233 799 False 736.0 736 83.3130 3 832 1 chr6A.!!$F1 829
9 TraesCS6B01G085800 chr6A 34146244 34147248 1004 False 384.0 496 90.2415 1149 1793 2 chr6A.!!$F2 644
10 TraesCS6B01G085800 chr6A 10510555 10511077 522 True 316.0 316 77.9850 1097 1623 1 chr6A.!!$R1 526
11 TraesCS6B01G085800 chr5A 104215141 104215874 733 True 339.0 339 75.5350 47 776 1 chr5A.!!$R1 729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 328 0.033991 TGAAGCTCCGCCTCTAGAGT 60.034 55.0 18.42 0.0 32.47 3.24 F
532 543 0.107800 CCTCGTCCTCGTCCTCACTA 60.108 60.0 0.00 0.0 38.33 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1597 1697 0.178068 AGCTTGGTGATACCGCGATT 59.822 50.000 8.23 0.0 42.58 3.34 R
1944 2401 1.143073 ACTGGTTGGGGTTCAGAAGTC 59.857 52.381 0.00 0.0 33.19 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.609783 GCCTACCCACAAGCTGGAT 59.390 57.895 0.00 0.00 43.95 3.41
34 35 2.372264 CCACAAGCTGGATAGTGCATT 58.628 47.619 0.00 0.00 43.95 3.56
35 36 2.756760 CCACAAGCTGGATAGTGCATTT 59.243 45.455 0.00 0.00 43.95 2.32
43 44 1.006832 GATAGTGCATTTGTCCGCGT 58.993 50.000 4.92 0.00 0.00 6.01
45 46 2.081725 TAGTGCATTTGTCCGCGTAA 57.918 45.000 4.92 0.00 0.00 3.18
53 54 4.411327 CATTTGTCCGCGTAAATTGATGT 58.589 39.130 4.92 0.00 0.00 3.06
90 92 1.332195 AGCTAGCCGCATATGTCTGA 58.668 50.000 12.13 0.00 42.61 3.27
174 178 9.961265 AACTCGAACGATATTCATTCATACTTA 57.039 29.630 0.00 0.00 0.00 2.24
176 180 8.965986 TCGAACGATATTCATTCATACTTAGG 57.034 34.615 0.00 0.00 0.00 2.69
227 231 3.008594 TGACATATTTGAACTGGACGGGT 59.991 43.478 0.00 0.00 0.00 5.28
259 263 2.124901 CCTAAATGACCGCCGGCA 60.125 61.111 28.98 7.02 0.00 5.69
295 299 2.827423 CAGGCCATGAGCTCCGAT 59.173 61.111 12.15 0.00 43.05 4.18
315 325 0.820871 AACTGAAGCTCCGCCTCTAG 59.179 55.000 0.00 0.00 0.00 2.43
318 328 0.033991 TGAAGCTCCGCCTCTAGAGT 60.034 55.000 18.42 0.00 32.47 3.24
319 329 1.107945 GAAGCTCCGCCTCTAGAGTT 58.892 55.000 18.42 4.21 32.47 3.01
326 336 1.338200 CCGCCTCTAGAGTTTGCTTGT 60.338 52.381 18.42 0.00 0.00 3.16
383 394 0.902531 CTTCTACAGGAAGGGCGGAA 59.097 55.000 0.00 0.00 45.55 4.30
384 395 1.486726 CTTCTACAGGAAGGGCGGAAT 59.513 52.381 0.00 0.00 45.55 3.01
385 396 2.464796 TCTACAGGAAGGGCGGAATA 57.535 50.000 0.00 0.00 0.00 1.75
394 405 1.076995 GGGCGGAATAGTGGCCTTT 60.077 57.895 3.32 0.00 46.62 3.11
407 418 0.253327 GGCCTTTCTCGGATCCAAGT 59.747 55.000 13.41 0.00 0.00 3.16
409 420 1.339151 GCCTTTCTCGGATCCAAGTGT 60.339 52.381 13.41 0.00 0.00 3.55
421 432 2.600769 AAGTGTCGGCGACCTCCT 60.601 61.111 34.28 24.05 0.00 3.69
430 441 2.737180 CGACCTCCTATGCGCCAT 59.263 61.111 4.18 0.63 0.00 4.40
431 442 1.373497 CGACCTCCTATGCGCCATC 60.373 63.158 4.18 0.00 0.00 3.51
447 458 2.242043 CCATCCTTTCTTGCTGTTGGT 58.758 47.619 0.00 0.00 0.00 3.67
532 543 0.107800 CCTCGTCCTCGTCCTCACTA 60.108 60.000 0.00 0.00 38.33 2.74
536 547 1.743958 CGTCCTCGTCCTCACTATTGT 59.256 52.381 0.00 0.00 0.00 2.71
544 555 5.118286 TCGTCCTCACTATTGTCGTATACA 58.882 41.667 3.32 0.00 35.88 2.29
570 581 1.244697 GCCGCCTCATCGATCTCCTA 61.245 60.000 0.00 0.00 0.00 2.94
605 618 2.975536 CCTGACGGAGGCGGTAAA 59.024 61.111 0.00 0.00 34.01 2.01
628 641 2.094757 AACAGTCGCGGTGGATGTCA 62.095 55.000 6.13 0.00 0.00 3.58
629 642 2.094659 CAGTCGCGGTGGATGTCAC 61.095 63.158 6.13 0.00 45.34 3.67
631 644 3.366915 TCGCGGTGGATGTCACGA 61.367 61.111 6.13 0.00 46.96 4.35
682 696 3.589654 CTCGGGCATGTCCACGTGT 62.590 63.158 18.31 0.00 35.38 4.49
747 761 2.122167 GCTCGTCGAGGAGGTGGAT 61.122 63.158 30.26 0.00 34.56 3.41
788 802 1.802839 CGCTTGCGAGCTCAAATAAC 58.197 50.000 23.42 0.00 46.96 1.89
811 825 6.484288 ACATGTCATCTCAATTTGGTAAGGA 58.516 36.000 0.00 0.00 0.00 3.36
875 889 5.838521 TCTAGTCTGGTTCATACATATGGCA 59.161 40.000 7.80 0.00 34.50 4.92
912 926 0.322187 GCGTGGGGTCACCTTATTGT 60.322 55.000 0.00 0.00 40.65 2.71
937 951 3.888930 GGTTGAAGTGAACCAAATCTGGA 59.111 43.478 0.00 0.00 46.92 3.86
946 960 1.218047 CAAATCTGGAGGACGGCGA 59.782 57.895 16.62 0.00 0.00 5.54
975 1004 2.104963 GTCTCTCTCTCTCTCTCCCTCC 59.895 59.091 0.00 0.00 0.00 4.30
1045 1097 1.671901 CGCCCACCTCCTCTCTTCTC 61.672 65.000 0.00 0.00 0.00 2.87
1048 1100 1.040339 CCACCTCCTCTCTTCTCCCG 61.040 65.000 0.00 0.00 0.00 5.14
1074 1145 3.330720 CTCCACCACCTCCCCCAC 61.331 72.222 0.00 0.00 0.00 4.61
1100 1178 1.900545 GCCTCCCACTACACACTCCC 61.901 65.000 0.00 0.00 0.00 4.30
1229 1321 0.545309 CTCTCCCACCTCAAGTCCCA 60.545 60.000 0.00 0.00 0.00 4.37
1455 1547 3.556633 GCATCAGATCCATCGTCTCCAAT 60.557 47.826 0.00 0.00 0.00 3.16
1469 1564 2.173669 CCAATCTGCCGTACTGCCG 61.174 63.158 6.82 0.32 0.00 5.69
1479 1574 1.716826 CGTACTGCCGGTCTCTCCTC 61.717 65.000 1.90 0.00 0.00 3.71
1480 1575 1.451567 TACTGCCGGTCTCTCCTCG 60.452 63.158 1.90 0.00 0.00 4.63
1481 1576 2.888464 TACTGCCGGTCTCTCCTCGG 62.888 65.000 1.90 0.00 45.84 4.63
1597 1697 1.901948 CGGGAGTGCGGGCTAGATA 60.902 63.158 0.00 0.00 0.00 1.98
1670 2125 3.054361 AGGAAAATGGATTGCTAGACCGT 60.054 43.478 0.00 0.00 0.00 4.83
1696 2151 3.556213 CGGGACTACTGGACAATTGTCAA 60.556 47.826 33.42 25.06 46.47 3.18
1828 2283 5.381174 TTCAGATTTGCATGAACCAAGAG 57.619 39.130 0.00 0.00 30.67 2.85
1829 2284 3.192001 TCAGATTTGCATGAACCAAGAGC 59.808 43.478 0.00 0.00 0.00 4.09
1852 2308 3.565902 GGGCTATGAGAATTGGTAACTGC 59.434 47.826 0.00 0.00 37.61 4.40
1853 2309 4.455606 GGCTATGAGAATTGGTAACTGCT 58.544 43.478 0.00 0.00 37.61 4.24
1857 2313 6.127897 GCTATGAGAATTGGTAACTGCTTGTT 60.128 38.462 0.00 1.74 42.31 2.83
1859 2315 4.229876 GAGAATTGGTAACTGCTTGTTGC 58.770 43.478 6.04 4.76 39.55 4.17
1882 2338 4.201628 CGCAACAAAGTCTACACTCTATGC 60.202 45.833 0.00 0.00 29.93 3.14
1899 2355 7.066284 CACTCTATGCAGTAAGCTGGTAATTTT 59.934 37.037 0.00 0.00 45.94 1.82
1907 2363 7.078228 CAGTAAGCTGGTAATTTTTGTCTCAC 58.922 38.462 0.00 0.00 39.01 3.51
1930 2387 4.072131 TGTTCTTTGCCTAACTGGATGTC 58.928 43.478 0.00 0.00 38.35 3.06
1939 2396 4.499183 CCTAACTGGATGTCTGTTGTCTC 58.501 47.826 0.00 0.00 37.92 3.36
1940 2397 4.021104 CCTAACTGGATGTCTGTTGTCTCA 60.021 45.833 0.00 0.00 37.92 3.27
1941 2398 3.674528 ACTGGATGTCTGTTGTCTCAG 57.325 47.619 0.00 0.00 36.85 3.35
1942 2399 2.968574 ACTGGATGTCTGTTGTCTCAGT 59.031 45.455 0.00 0.00 36.85 3.41
1944 2401 3.732212 TGGATGTCTGTTGTCTCAGTTG 58.268 45.455 0.00 0.00 36.85 3.16
1946 2403 3.743396 GGATGTCTGTTGTCTCAGTTGAC 59.257 47.826 0.00 0.00 36.85 3.18
1955 2413 4.060038 TGTCTCAGTTGACTTCTGAACC 57.940 45.455 0.00 0.00 40.68 3.62
1960 2418 2.618709 CAGTTGACTTCTGAACCCCAAC 59.381 50.000 12.84 12.84 35.20 3.77
1961 2419 1.954382 GTTGACTTCTGAACCCCAACC 59.046 52.381 10.95 0.00 0.00 3.77
1966 2424 1.956477 CTTCTGAACCCCAACCAGTTG 59.044 52.381 3.47 3.47 40.13 3.16
1973 2431 1.499007 ACCCCAACCAGTTGATGTCTT 59.501 47.619 12.06 0.00 42.93 3.01
1975 2433 3.333680 ACCCCAACCAGTTGATGTCTTAT 59.666 43.478 12.06 0.00 42.93 1.73
1977 2435 4.772100 CCCCAACCAGTTGATGTCTTATTT 59.228 41.667 12.06 0.00 42.93 1.40
1996 2454 8.321353 TCTTATTTGGTAGAGAAGAAAGCATCA 58.679 33.333 0.00 0.00 0.00 3.07
1998 2456 4.890158 TGGTAGAGAAGAAAGCATCACA 57.110 40.909 0.00 0.00 0.00 3.58
1999 2457 5.426689 TGGTAGAGAAGAAAGCATCACAT 57.573 39.130 0.00 0.00 0.00 3.21
2017 2475 6.769134 TCACATGCAATCTCTGAAAATGAT 57.231 33.333 0.00 0.00 0.00 2.45
2019 2477 8.283699 TCACATGCAATCTCTGAAAATGATAA 57.716 30.769 0.00 0.00 0.00 1.75
2021 2479 7.167635 CACATGCAATCTCTGAAAATGATAAGC 59.832 37.037 0.00 0.00 0.00 3.09
2022 2480 6.762702 TGCAATCTCTGAAAATGATAAGCA 57.237 33.333 0.00 0.00 32.76 3.91
2023 2481 7.342769 TGCAATCTCTGAAAATGATAAGCAT 57.657 32.000 0.00 0.00 39.43 3.79
2024 2482 7.200455 TGCAATCTCTGAAAATGATAAGCATG 58.800 34.615 0.00 0.00 37.28 4.06
2028 2486 8.707796 ATCTCTGAAAATGATAAGCATGGAAT 57.292 30.769 0.00 0.00 37.28 3.01
2029 2487 9.803507 ATCTCTGAAAATGATAAGCATGGAATA 57.196 29.630 0.00 0.00 37.28 1.75
2030 2488 9.803507 TCTCTGAAAATGATAAGCATGGAATAT 57.196 29.630 0.00 0.00 37.28 1.28
2048 2507 9.621629 ATGGAATATATTTGTGTTTCCGACTTA 57.378 29.630 0.00 0.00 38.94 2.24
2062 2521 9.226606 TGTTTCCGACTTATGTTTAAGATCATT 57.773 29.630 0.00 0.00 38.56 2.57
2063 2522 9.490663 GTTTCCGACTTATGTTTAAGATCATTG 57.509 33.333 0.00 0.00 38.56 2.82
2075 2534 9.642327 TGTTTAAGATCATTGAAATTGGATGTG 57.358 29.630 0.00 0.00 0.00 3.21
2078 2537 4.652421 AGATCATTGAAATTGGATGTGGGG 59.348 41.667 0.00 0.00 0.00 4.96
2079 2538 4.058417 TCATTGAAATTGGATGTGGGGA 57.942 40.909 0.00 0.00 0.00 4.81
2084 2543 5.141455 TGAAATTGGATGTGGGGATGTAT 57.859 39.130 0.00 0.00 0.00 2.29
2085 2544 5.139727 TGAAATTGGATGTGGGGATGTATC 58.860 41.667 0.00 0.00 0.00 2.24
2088 2547 4.599720 TTGGATGTGGGGATGTATCAAA 57.400 40.909 0.00 0.00 0.00 2.69
2102 2561 7.545615 GGGATGTATCAAATTTCTGTTGAAACC 59.454 37.037 0.00 0.00 43.90 3.27
2110 2570 3.374042 TTCTGTTGAAACCAGACCCAA 57.626 42.857 0.00 0.00 0.00 4.12
2132 2592 5.921962 AAGAACCAGAAAGCAAAAGAACT 57.078 34.783 0.00 0.00 0.00 3.01
2138 2598 5.163131 ACCAGAAAGCAAAAGAACTACCCTA 60.163 40.000 0.00 0.00 0.00 3.53
2140 2600 5.763204 CAGAAAGCAAAAGAACTACCCTACA 59.237 40.000 0.00 0.00 0.00 2.74
2143 2603 6.575162 AAGCAAAAGAACTACCCTACATTG 57.425 37.500 0.00 0.00 0.00 2.82
2144 2604 5.010282 AGCAAAAGAACTACCCTACATTGG 58.990 41.667 0.00 0.00 0.00 3.16
2145 2605 4.765339 GCAAAAGAACTACCCTACATTGGT 59.235 41.667 0.00 0.00 39.97 3.67
2148 2608 7.685884 GCAAAAGAACTACCCTACATTGGTTTT 60.686 37.037 0.00 0.00 37.31 2.43
2150 2610 6.195600 AGAACTACCCTACATTGGTTTTCA 57.804 37.500 0.00 0.00 37.31 2.69
2151 2611 6.790319 AGAACTACCCTACATTGGTTTTCAT 58.210 36.000 0.00 0.00 37.31 2.57
2153 2613 8.387813 AGAACTACCCTACATTGGTTTTCATTA 58.612 33.333 0.00 0.00 37.31 1.90
2154 2614 8.943594 AACTACCCTACATTGGTTTTCATTAA 57.056 30.769 0.00 0.00 37.31 1.40
2155 2615 8.344446 ACTACCCTACATTGGTTTTCATTAAC 57.656 34.615 0.00 0.00 37.31 2.01
2224 2686 9.405587 GTTCCATTTTCATTTCATCGTCTTTTA 57.594 29.630 0.00 0.00 0.00 1.52
2232 2694 9.958234 TTCATTTCATCGTCTTTTATTGTTTCA 57.042 25.926 0.00 0.00 0.00 2.69
2262 2724 8.848474 ATGTAAGTTAGTAGTGAAATTGCAGT 57.152 30.769 0.00 0.00 31.74 4.40
2263 2725 8.671384 TGTAAGTTAGTAGTGAAATTGCAGTT 57.329 30.769 0.00 0.00 0.00 3.16
2264 2726 8.770828 TGTAAGTTAGTAGTGAAATTGCAGTTC 58.229 33.333 0.00 0.00 0.00 3.01
2265 2727 7.801716 AAGTTAGTAGTGAAATTGCAGTTCA 57.198 32.000 10.05 10.05 32.62 3.18
2266 2728 7.801716 AGTTAGTAGTGAAATTGCAGTTCAA 57.198 32.000 14.45 0.79 36.77 2.69
2267 2729 8.220755 AGTTAGTAGTGAAATTGCAGTTCAAA 57.779 30.769 14.45 4.88 36.77 2.69
2268 2730 8.850156 AGTTAGTAGTGAAATTGCAGTTCAAAT 58.150 29.630 14.45 10.02 36.77 2.32
2269 2731 9.463443 GTTAGTAGTGAAATTGCAGTTCAAATT 57.537 29.630 14.45 7.87 36.77 1.82
2272 2734 9.683069 AGTAGTGAAATTGCAGTTCAAATTTAG 57.317 29.630 14.45 0.00 36.77 1.85
2273 2735 9.677567 GTAGTGAAATTGCAGTTCAAATTTAGA 57.322 29.630 14.45 0.00 36.77 2.10
2274 2736 8.579682 AGTGAAATTGCAGTTCAAATTTAGAC 57.420 30.769 14.45 5.17 36.77 2.59
2275 2737 8.416329 AGTGAAATTGCAGTTCAAATTTAGACT 58.584 29.630 14.45 6.92 36.77 3.24
2276 2738 8.694394 GTGAAATTGCAGTTCAAATTTAGACTC 58.306 33.333 14.45 0.00 36.77 3.36
2277 2739 8.632679 TGAAATTGCAGTTCAAATTTAGACTCT 58.367 29.630 11.35 0.00 38.34 3.24
2278 2740 8.807667 AAATTGCAGTTCAAATTTAGACTCTG 57.192 30.769 0.00 4.60 38.34 3.35
2279 2741 6.942532 TTGCAGTTCAAATTTAGACTCTGT 57.057 33.333 0.00 0.00 0.00 3.41
2280 2742 8.621532 ATTGCAGTTCAAATTTAGACTCTGTA 57.378 30.769 0.00 1.04 38.34 2.74
2281 2743 7.658179 TGCAGTTCAAATTTAGACTCTGTAG 57.342 36.000 0.00 0.00 0.00 2.74
2282 2744 7.441836 TGCAGTTCAAATTTAGACTCTGTAGA 58.558 34.615 0.00 0.00 0.00 2.59
2283 2745 7.931407 TGCAGTTCAAATTTAGACTCTGTAGAA 59.069 33.333 0.00 0.00 0.00 2.10
2284 2746 8.774586 GCAGTTCAAATTTAGACTCTGTAGAAA 58.225 33.333 0.00 0.00 0.00 2.52
2301 2763 9.905713 TCTGTAGAAAATATATTTCTGTTGGCT 57.094 29.630 11.08 4.00 38.98 4.75
2302 2764 9.941664 CTGTAGAAAATATATTTCTGTTGGCTG 57.058 33.333 11.08 0.80 38.98 4.85
2303 2765 9.461312 TGTAGAAAATATATTTCTGTTGGCTGT 57.539 29.630 11.08 0.00 38.98 4.40
2313 2775 6.952773 TTTCTGTTGGCTGTATGTTTAACT 57.047 33.333 0.00 0.00 0.00 2.24
2314 2776 6.952773 TTCTGTTGGCTGTATGTTTAACTT 57.047 33.333 0.00 0.00 0.00 2.66
2315 2777 6.952773 TCTGTTGGCTGTATGTTTAACTTT 57.047 33.333 0.00 0.00 0.00 2.66
2316 2778 7.341445 TCTGTTGGCTGTATGTTTAACTTTT 57.659 32.000 0.00 0.00 0.00 2.27
2317 2779 7.777095 TCTGTTGGCTGTATGTTTAACTTTTT 58.223 30.769 0.00 0.00 0.00 1.94
2318 2780 7.704472 TCTGTTGGCTGTATGTTTAACTTTTTG 59.296 33.333 0.00 0.00 0.00 2.44
2319 2781 6.256757 TGTTGGCTGTATGTTTAACTTTTTGC 59.743 34.615 0.00 0.00 0.00 3.68
2320 2782 6.155475 TGGCTGTATGTTTAACTTTTTGCT 57.845 33.333 0.00 0.00 0.00 3.91
2321 2783 6.578023 TGGCTGTATGTTTAACTTTTTGCTT 58.422 32.000 0.00 0.00 0.00 3.91
2322 2784 7.044798 TGGCTGTATGTTTAACTTTTTGCTTT 58.955 30.769 0.00 0.00 0.00 3.51
2323 2785 7.550906 TGGCTGTATGTTTAACTTTTTGCTTTT 59.449 29.630 0.00 0.00 0.00 2.27
2324 2786 8.061857 GGCTGTATGTTTAACTTTTTGCTTTTC 58.938 33.333 0.00 0.00 0.00 2.29
2325 2787 8.061857 GCTGTATGTTTAACTTTTTGCTTTTCC 58.938 33.333 0.00 0.00 0.00 3.13
2326 2788 8.426881 TGTATGTTTAACTTTTTGCTTTTCCC 57.573 30.769 0.00 0.00 0.00 3.97
2327 2789 6.935741 ATGTTTAACTTTTTGCTTTTCCCC 57.064 33.333 0.00 0.00 0.00 4.81
2328 2790 5.186942 TGTTTAACTTTTTGCTTTTCCCCC 58.813 37.500 0.00 0.00 0.00 5.40
2343 2805 3.978876 CCCCCTGTACCCTTCAAAG 57.021 57.895 0.00 0.00 0.00 2.77
2344 2806 1.368374 CCCCCTGTACCCTTCAAAGA 58.632 55.000 0.00 0.00 0.00 2.52
2345 2807 1.923148 CCCCCTGTACCCTTCAAAGAT 59.077 52.381 0.00 0.00 0.00 2.40
2346 2808 2.092375 CCCCCTGTACCCTTCAAAGATC 60.092 54.545 0.00 0.00 0.00 2.75
2347 2809 2.576191 CCCCTGTACCCTTCAAAGATCA 59.424 50.000 0.00 0.00 0.00 2.92
2348 2810 3.010138 CCCCTGTACCCTTCAAAGATCAA 59.990 47.826 0.00 0.00 0.00 2.57
2349 2811 4.325344 CCCCTGTACCCTTCAAAGATCAAT 60.325 45.833 0.00 0.00 0.00 2.57
2350 2812 5.264395 CCCTGTACCCTTCAAAGATCAATT 58.736 41.667 0.00 0.00 0.00 2.32
2351 2813 6.423182 CCCTGTACCCTTCAAAGATCAATTA 58.577 40.000 0.00 0.00 0.00 1.40
2352 2814 7.062957 CCCTGTACCCTTCAAAGATCAATTAT 58.937 38.462 0.00 0.00 0.00 1.28
2353 2815 7.229506 CCCTGTACCCTTCAAAGATCAATTATC 59.770 40.741 0.00 0.00 34.52 1.75
2408 2870 9.301153 TCTGAGAAACTTTTAATTGTGAAAAGC 57.699 29.630 10.50 0.00 44.32 3.51
2409 2871 9.305925 CTGAGAAACTTTTAATTGTGAAAAGCT 57.694 29.630 10.50 2.59 44.32 3.74
2410 2872 9.086336 TGAGAAACTTTTAATTGTGAAAAGCTG 57.914 29.630 10.50 0.00 44.32 4.24
2411 2873 9.301153 GAGAAACTTTTAATTGTGAAAAGCTGA 57.699 29.630 10.50 0.00 44.32 4.26
2412 2874 9.087424 AGAAACTTTTAATTGTGAAAAGCTGAC 57.913 29.630 10.50 3.13 44.32 3.51
2413 2875 7.770801 AACTTTTAATTGTGAAAAGCTGACC 57.229 32.000 10.50 0.00 44.32 4.02
2414 2876 7.112452 ACTTTTAATTGTGAAAAGCTGACCT 57.888 32.000 10.50 0.00 44.32 3.85
2415 2877 8.232913 ACTTTTAATTGTGAAAAGCTGACCTA 57.767 30.769 10.50 0.00 44.32 3.08
2416 2878 8.860088 ACTTTTAATTGTGAAAAGCTGACCTAT 58.140 29.630 10.50 0.00 44.32 2.57
2417 2879 9.346725 CTTTTAATTGTGAAAAGCTGACCTATC 57.653 33.333 0.00 0.00 37.16 2.08
2418 2880 8.635765 TTTAATTGTGAAAAGCTGACCTATCT 57.364 30.769 0.00 0.00 0.00 1.98
2419 2881 6.506500 AATTGTGAAAAGCTGACCTATCTG 57.493 37.500 0.00 0.00 0.00 2.90
2420 2882 4.890158 TGTGAAAAGCTGACCTATCTGA 57.110 40.909 0.00 0.00 0.00 3.27
2421 2883 4.825422 TGTGAAAAGCTGACCTATCTGAG 58.175 43.478 0.00 0.00 0.00 3.35
2422 2884 4.528206 TGTGAAAAGCTGACCTATCTGAGA 59.472 41.667 0.00 0.00 0.00 3.27
2423 2885 4.867608 GTGAAAAGCTGACCTATCTGAGAC 59.132 45.833 0.00 0.00 0.00 3.36
2424 2886 4.774726 TGAAAAGCTGACCTATCTGAGACT 59.225 41.667 0.00 0.00 0.00 3.24
2425 2887 5.952347 TGAAAAGCTGACCTATCTGAGACTA 59.048 40.000 0.00 0.00 0.00 2.59
2426 2888 6.437477 TGAAAAGCTGACCTATCTGAGACTAA 59.563 38.462 0.00 0.00 0.00 2.24
2427 2889 6.859112 AAAGCTGACCTATCTGAGACTAAA 57.141 37.500 0.00 0.00 0.00 1.85
2428 2890 6.463995 AAGCTGACCTATCTGAGACTAAAG 57.536 41.667 0.00 0.00 0.00 1.85
2429 2891 4.340950 AGCTGACCTATCTGAGACTAAAGC 59.659 45.833 0.00 0.00 0.00 3.51
2430 2892 4.098654 GCTGACCTATCTGAGACTAAAGCA 59.901 45.833 0.00 0.00 0.00 3.91
2431 2893 5.221422 GCTGACCTATCTGAGACTAAAGCAT 60.221 44.000 0.00 0.00 0.00 3.79
2432 2894 6.154203 TGACCTATCTGAGACTAAAGCATG 57.846 41.667 0.00 0.00 0.00 4.06
2433 2895 5.893824 TGACCTATCTGAGACTAAAGCATGA 59.106 40.000 0.00 0.00 0.00 3.07
2434 2896 6.155475 ACCTATCTGAGACTAAAGCATGAC 57.845 41.667 0.00 0.00 0.00 3.06
2435 2897 5.069781 ACCTATCTGAGACTAAAGCATGACC 59.930 44.000 0.00 0.00 0.00 4.02
2436 2898 5.069648 CCTATCTGAGACTAAAGCATGACCA 59.930 44.000 0.00 0.00 0.00 4.02
2437 2899 4.890158 TCTGAGACTAAAGCATGACCAA 57.110 40.909 0.00 0.00 0.00 3.67
2438 2900 4.569943 TCTGAGACTAAAGCATGACCAAC 58.430 43.478 0.00 0.00 0.00 3.77
2439 2901 4.040339 TCTGAGACTAAAGCATGACCAACA 59.960 41.667 0.00 0.00 0.00 3.33
2440 2902 4.713553 TGAGACTAAAGCATGACCAACAA 58.286 39.130 0.00 0.00 0.00 2.83
2441 2903 5.129634 TGAGACTAAAGCATGACCAACAAA 58.870 37.500 0.00 0.00 0.00 2.83
2442 2904 5.769662 TGAGACTAAAGCATGACCAACAAAT 59.230 36.000 0.00 0.00 0.00 2.32
2443 2905 6.017400 AGACTAAAGCATGACCAACAAATG 57.983 37.500 0.00 0.00 0.00 2.32
2444 2906 5.769662 AGACTAAAGCATGACCAACAAATGA 59.230 36.000 0.00 0.00 0.00 2.57
2445 2907 6.265196 AGACTAAAGCATGACCAACAAATGAA 59.735 34.615 0.00 0.00 0.00 2.57
2446 2908 6.996509 ACTAAAGCATGACCAACAAATGAAT 58.003 32.000 0.00 0.00 0.00 2.57
2447 2909 7.444299 ACTAAAGCATGACCAACAAATGAATT 58.556 30.769 0.00 0.00 0.00 2.17
2448 2910 8.584157 ACTAAAGCATGACCAACAAATGAATTA 58.416 29.630 0.00 0.00 0.00 1.40
2449 2911 9.421806 CTAAAGCATGACCAACAAATGAATTAA 57.578 29.630 0.00 0.00 0.00 1.40
2450 2912 8.851541 AAAGCATGACCAACAAATGAATTAAT 57.148 26.923 0.00 0.00 0.00 1.40
2451 2913 8.483307 AAGCATGACCAACAAATGAATTAATC 57.517 30.769 0.00 0.00 0.00 1.75
2452 2914 7.844009 AGCATGACCAACAAATGAATTAATCT 58.156 30.769 0.00 0.00 0.00 2.40
2453 2915 8.316214 AGCATGACCAACAAATGAATTAATCTT 58.684 29.630 0.00 0.00 0.00 2.40
2454 2916 9.585099 GCATGACCAACAAATGAATTAATCTTA 57.415 29.630 0.00 0.00 0.00 2.10
2492 2954 9.933723 TGTCCTAATAGTTAGAACTAAACCAAC 57.066 33.333 6.24 4.22 44.03 3.77
2493 2955 9.933723 GTCCTAATAGTTAGAACTAAACCAACA 57.066 33.333 6.24 0.00 44.03 3.33
2499 2961 9.877178 ATAGTTAGAACTAAACCAACAGAGATG 57.123 33.333 6.24 0.00 44.03 2.90
2500 2962 7.162082 AGTTAGAACTAAACCAACAGAGATGG 58.838 38.462 0.00 0.00 39.64 3.51
2501 2963 4.327680 AGAACTAAACCAACAGAGATGGC 58.672 43.478 0.00 0.00 41.89 4.40
2502 2964 3.788227 ACTAAACCAACAGAGATGGCA 57.212 42.857 0.00 0.00 41.89 4.92
2503 2965 4.307032 ACTAAACCAACAGAGATGGCAT 57.693 40.909 0.00 0.00 41.89 4.40
2504 2966 4.666512 ACTAAACCAACAGAGATGGCATT 58.333 39.130 0.00 0.00 41.89 3.56
2505 2967 5.815581 ACTAAACCAACAGAGATGGCATTA 58.184 37.500 0.00 0.00 41.89 1.90
2506 2968 6.245408 ACTAAACCAACAGAGATGGCATTAA 58.755 36.000 0.00 0.00 41.89 1.40
2507 2969 6.719370 ACTAAACCAACAGAGATGGCATTAAA 59.281 34.615 0.00 0.00 41.89 1.52
2508 2970 5.391312 AACCAACAGAGATGGCATTAAAC 57.609 39.130 0.00 0.00 41.89 2.01
2509 2971 4.666512 ACCAACAGAGATGGCATTAAACT 58.333 39.130 0.00 0.00 41.89 2.66
2510 2972 4.460382 ACCAACAGAGATGGCATTAAACTG 59.540 41.667 0.00 11.22 41.89 3.16
2511 2973 4.460382 CCAACAGAGATGGCATTAAACTGT 59.540 41.667 17.30 17.30 38.48 3.55
2512 2974 5.647658 CCAACAGAGATGGCATTAAACTGTA 59.352 40.000 20.68 0.00 36.36 2.74
2513 2975 6.319658 CCAACAGAGATGGCATTAAACTGTAT 59.680 38.462 20.68 13.03 36.36 2.29
2514 2976 7.412853 CAACAGAGATGGCATTAAACTGTATC 58.587 38.462 20.68 1.08 36.36 2.24
2515 2977 6.058183 ACAGAGATGGCATTAAACTGTATCC 58.942 40.000 19.73 0.00 35.77 2.59
2516 2978 6.057533 CAGAGATGGCATTAAACTGTATCCA 58.942 40.000 0.00 0.00 0.00 3.41
2517 2979 6.713903 CAGAGATGGCATTAAACTGTATCCAT 59.286 38.462 0.00 0.00 35.73 3.41
2518 2980 7.230108 CAGAGATGGCATTAAACTGTATCCATT 59.770 37.037 0.00 0.00 33.44 3.16
2519 2981 7.446625 AGAGATGGCATTAAACTGTATCCATTC 59.553 37.037 0.00 0.00 33.44 2.67
2520 2982 7.062322 AGATGGCATTAAACTGTATCCATTCA 58.938 34.615 0.00 0.00 33.44 2.57
2521 2983 6.449635 TGGCATTAAACTGTATCCATTCAC 57.550 37.500 0.00 0.00 0.00 3.18
2522 2984 5.948758 TGGCATTAAACTGTATCCATTCACA 59.051 36.000 0.00 0.00 0.00 3.58
2523 2985 6.435591 TGGCATTAAACTGTATCCATTCACAA 59.564 34.615 0.00 0.00 0.00 3.33
2524 2986 7.039434 TGGCATTAAACTGTATCCATTCACAAA 60.039 33.333 0.00 0.00 0.00 2.83
2525 2987 7.816995 GGCATTAAACTGTATCCATTCACAAAA 59.183 33.333 0.00 0.00 0.00 2.44
2526 2988 9.202273 GCATTAAACTGTATCCATTCACAAAAA 57.798 29.630 0.00 0.00 0.00 1.94
2533 2995 9.859427 ACTGTATCCATTCACAAAAATTACATG 57.141 29.630 0.00 0.00 0.00 3.21
2534 2996 9.859427 CTGTATCCATTCACAAAAATTACATGT 57.141 29.630 2.69 2.69 0.00 3.21
2547 3009 9.919348 CAAAAATTACATGTATATTTTGGCAGC 57.081 29.630 28.26 0.00 35.31 5.25
2548 3010 9.664332 AAAAATTACATGTATATTTTGGCAGCA 57.336 25.926 23.93 4.37 33.20 4.41
2549 3011 9.664332 AAAATTACATGTATATTTTGGCAGCAA 57.336 25.926 23.27 4.84 32.05 3.91
2550 3012 9.664332 AAATTACATGTATATTTTGGCAGCAAA 57.336 25.926 6.36 0.00 0.00 3.68
2551 3013 8.647143 ATTACATGTATATTTTGGCAGCAAAC 57.353 30.769 6.36 0.00 0.00 2.93
2552 3014 6.284891 ACATGTATATTTTGGCAGCAAACT 57.715 33.333 0.00 0.00 0.00 2.66
2553 3015 6.700352 ACATGTATATTTTGGCAGCAAACTT 58.300 32.000 0.00 0.00 0.00 2.66
2554 3016 6.591062 ACATGTATATTTTGGCAGCAAACTTG 59.409 34.615 0.00 0.00 0.00 3.16
2555 3017 6.095432 TGTATATTTTGGCAGCAAACTTGT 57.905 33.333 0.00 0.00 0.00 3.16
2556 3018 6.155827 TGTATATTTTGGCAGCAAACTTGTC 58.844 36.000 0.00 0.00 0.00 3.18
2557 3019 1.919918 TTTTGGCAGCAAACTTGTCG 58.080 45.000 0.00 0.00 0.00 4.35
2558 3020 1.098869 TTTGGCAGCAAACTTGTCGA 58.901 45.000 0.00 0.00 0.00 4.20
2559 3021 1.317613 TTGGCAGCAAACTTGTCGAT 58.682 45.000 0.00 0.00 0.00 3.59
2560 3022 1.317613 TGGCAGCAAACTTGTCGATT 58.682 45.000 0.00 0.00 0.00 3.34
2561 3023 1.266718 TGGCAGCAAACTTGTCGATTC 59.733 47.619 0.00 0.00 0.00 2.52
2562 3024 1.595609 GCAGCAAACTTGTCGATTCG 58.404 50.000 0.00 0.00 0.00 3.34
2563 3025 1.194547 GCAGCAAACTTGTCGATTCGA 59.805 47.619 4.29 4.29 0.00 3.71
2564 3026 2.349438 GCAGCAAACTTGTCGATTCGAA 60.349 45.455 10.87 0.00 37.72 3.71
2565 3027 3.848191 GCAGCAAACTTGTCGATTCGAAA 60.848 43.478 10.87 1.80 37.72 3.46
2566 3028 4.278858 CAGCAAACTTGTCGATTCGAAAA 58.721 39.130 10.87 10.97 37.72 2.29
2567 3029 4.911610 CAGCAAACTTGTCGATTCGAAAAT 59.088 37.500 11.89 0.00 37.72 1.82
2568 3030 5.058492 CAGCAAACTTGTCGATTCGAAAATC 59.942 40.000 11.89 0.10 37.72 2.17
2569 3031 4.909305 GCAAACTTGTCGATTCGAAAATCA 59.091 37.500 11.89 2.79 41.22 2.57
2570 3032 5.398122 GCAAACTTGTCGATTCGAAAATCAA 59.602 36.000 11.89 10.15 41.22 2.57
2571 3033 6.611464 GCAAACTTGTCGATTCGAAAATCAAC 60.611 38.462 11.89 0.00 41.22 3.18
2572 3034 5.030874 ACTTGTCGATTCGAAAATCAACC 57.969 39.130 11.89 0.00 41.22 3.77
2573 3035 4.755123 ACTTGTCGATTCGAAAATCAACCT 59.245 37.500 11.89 0.00 41.22 3.50
2574 3036 4.921470 TGTCGATTCGAAAATCAACCTC 57.079 40.909 10.87 0.00 41.22 3.85
2575 3037 3.366724 TGTCGATTCGAAAATCAACCTCG 59.633 43.478 10.87 4.46 41.22 4.63
2576 3038 3.367025 GTCGATTCGAAAATCAACCTCGT 59.633 43.478 10.87 0.00 41.22 4.18
2577 3039 4.560035 GTCGATTCGAAAATCAACCTCGTA 59.440 41.667 10.87 0.00 41.22 3.43
2578 3040 5.061311 GTCGATTCGAAAATCAACCTCGTAA 59.939 40.000 10.87 0.00 41.22 3.18
2579 3041 5.634439 TCGATTCGAAAATCAACCTCGTAAA 59.366 36.000 6.24 0.00 41.22 2.01
2580 3042 6.311935 TCGATTCGAAAATCAACCTCGTAAAT 59.688 34.615 6.24 0.00 41.22 1.40
2581 3043 6.623743 CGATTCGAAAATCAACCTCGTAAATC 59.376 38.462 0.00 0.00 41.22 2.17
2582 3044 7.464178 CGATTCGAAAATCAACCTCGTAAATCT 60.464 37.037 0.00 0.00 41.22 2.40
2583 3045 8.712285 ATTCGAAAATCAACCTCGTAAATCTA 57.288 30.769 0.00 0.00 34.27 1.98
2584 3046 7.515957 TCGAAAATCAACCTCGTAAATCTAC 57.484 36.000 0.00 0.00 34.27 2.59
2585 3047 7.092079 TCGAAAATCAACCTCGTAAATCTACA 58.908 34.615 0.00 0.00 34.27 2.74
2586 3048 7.599621 TCGAAAATCAACCTCGTAAATCTACAA 59.400 33.333 0.00 0.00 34.27 2.41
2587 3049 8.225107 CGAAAATCAACCTCGTAAATCTACAAA 58.775 33.333 0.00 0.00 0.00 2.83
2588 3050 9.543018 GAAAATCAACCTCGTAAATCTACAAAG 57.457 33.333 0.00 0.00 0.00 2.77
2589 3051 8.617290 AAATCAACCTCGTAAATCTACAAAGT 57.383 30.769 0.00 0.00 0.00 2.66
2590 3052 8.617290 AATCAACCTCGTAAATCTACAAAGTT 57.383 30.769 0.00 0.00 0.00 2.66
2591 3053 7.647907 TCAACCTCGTAAATCTACAAAGTTC 57.352 36.000 0.00 0.00 0.00 3.01
2592 3054 7.439381 TCAACCTCGTAAATCTACAAAGTTCT 58.561 34.615 0.00 0.00 0.00 3.01
2593 3055 7.384115 TCAACCTCGTAAATCTACAAAGTTCTG 59.616 37.037 0.00 0.00 0.00 3.02
2594 3056 5.638234 ACCTCGTAAATCTACAAAGTTCTGC 59.362 40.000 0.00 0.00 0.00 4.26
2595 3057 5.063564 CCTCGTAAATCTACAAAGTTCTGCC 59.936 44.000 0.00 0.00 0.00 4.85
2596 3058 4.933400 TCGTAAATCTACAAAGTTCTGCCC 59.067 41.667 0.00 0.00 0.00 5.36
2597 3059 4.693566 CGTAAATCTACAAAGTTCTGCCCA 59.306 41.667 0.00 0.00 0.00 5.36
2598 3060 5.354234 CGTAAATCTACAAAGTTCTGCCCAT 59.646 40.000 0.00 0.00 0.00 4.00
2599 3061 6.128007 CGTAAATCTACAAAGTTCTGCCCATT 60.128 38.462 0.00 0.00 0.00 3.16
2600 3062 6.670695 AAATCTACAAAGTTCTGCCCATTT 57.329 33.333 0.00 0.00 0.00 2.32
2601 3063 6.670695 AATCTACAAAGTTCTGCCCATTTT 57.329 33.333 0.00 0.00 0.00 1.82
2602 3064 5.452078 TCTACAAAGTTCTGCCCATTTTG 57.548 39.130 0.00 0.00 35.47 2.44
2603 3065 4.892934 TCTACAAAGTTCTGCCCATTTTGT 59.107 37.500 6.22 6.22 42.59 2.83
2604 3066 4.486125 ACAAAGTTCTGCCCATTTTGTT 57.514 36.364 0.00 0.00 38.42 2.83
2605 3067 4.190772 ACAAAGTTCTGCCCATTTTGTTG 58.809 39.130 0.00 0.00 38.42 3.33
2606 3068 2.531522 AGTTCTGCCCATTTTGTTGC 57.468 45.000 0.00 0.00 0.00 4.17
2607 3069 2.041701 AGTTCTGCCCATTTTGTTGCT 58.958 42.857 0.00 0.00 0.00 3.91
2608 3070 2.435437 AGTTCTGCCCATTTTGTTGCTT 59.565 40.909 0.00 0.00 0.00 3.91
2609 3071 3.640967 AGTTCTGCCCATTTTGTTGCTTA 59.359 39.130 0.00 0.00 0.00 3.09
2610 3072 3.940209 TCTGCCCATTTTGTTGCTTAG 57.060 42.857 0.00 0.00 0.00 2.18
2611 3073 3.495331 TCTGCCCATTTTGTTGCTTAGA 58.505 40.909 0.00 0.00 0.00 2.10
2612 3074 3.507233 TCTGCCCATTTTGTTGCTTAGAG 59.493 43.478 0.00 0.00 0.00 2.43
2613 3075 2.029110 TGCCCATTTTGTTGCTTAGAGC 60.029 45.455 0.00 0.00 42.82 4.09
2614 3076 2.232208 GCCCATTTTGTTGCTTAGAGCT 59.768 45.455 1.29 0.00 42.97 4.09
2615 3077 3.841643 CCCATTTTGTTGCTTAGAGCTG 58.158 45.455 0.00 0.00 42.97 4.24
2616 3078 3.507233 CCCATTTTGTTGCTTAGAGCTGA 59.493 43.478 0.00 0.00 42.97 4.26
2617 3079 4.380233 CCCATTTTGTTGCTTAGAGCTGAG 60.380 45.833 0.00 0.00 42.97 3.35
2618 3080 3.904136 TTTTGTTGCTTAGAGCTGAGC 57.096 42.857 7.26 7.26 42.97 4.26
2619 3081 2.847327 TTGTTGCTTAGAGCTGAGCT 57.153 45.000 6.69 6.69 42.97 4.09
2620 3082 3.961480 TTGTTGCTTAGAGCTGAGCTA 57.039 42.857 7.08 5.25 42.97 3.32
2621 3083 4.478206 TTGTTGCTTAGAGCTGAGCTAT 57.522 40.909 7.08 6.96 42.97 2.97
2622 3084 5.598416 TTGTTGCTTAGAGCTGAGCTATA 57.402 39.130 7.08 5.62 42.97 1.31
2623 3085 5.598416 TGTTGCTTAGAGCTGAGCTATAA 57.402 39.130 19.11 19.11 42.97 0.98
2631 3093 5.181690 AGAGCTGAGCTATAAGTCTTTCG 57.818 43.478 7.08 0.00 39.88 3.46
2632 3094 3.712187 AGCTGAGCTATAAGTCTTTCGC 58.288 45.455 4.49 0.00 36.99 4.70
2633 3095 3.131223 AGCTGAGCTATAAGTCTTTCGCA 59.869 43.478 4.49 0.00 36.99 5.10
2634 3096 3.865745 GCTGAGCTATAAGTCTTTCGCAA 59.134 43.478 0.00 0.00 0.00 4.85
2635 3097 4.026145 GCTGAGCTATAAGTCTTTCGCAAG 60.026 45.833 0.00 0.00 0.00 4.01
2636 3098 3.865745 TGAGCTATAAGTCTTTCGCAAGC 59.134 43.478 0.00 0.00 37.18 4.01
2637 3099 3.861840 AGCTATAAGTCTTTCGCAAGCA 58.138 40.909 0.00 0.00 37.18 3.91
2638 3100 3.619038 AGCTATAAGTCTTTCGCAAGCAC 59.381 43.478 0.00 0.00 37.18 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.081725 TTACGCGGACAAATGCACTA 57.918 45.000 12.47 0.00 0.00 2.74
34 35 2.160615 CCACATCAATTTACGCGGACAA 59.839 45.455 12.47 0.00 0.00 3.18
35 36 1.735018 CCACATCAATTTACGCGGACA 59.265 47.619 12.47 0.00 0.00 4.02
43 44 3.262151 TGGTCGTCTCCCACATCAATTTA 59.738 43.478 0.00 0.00 0.00 1.40
45 46 1.628340 TGGTCGTCTCCCACATCAATT 59.372 47.619 0.00 0.00 0.00 2.32
53 54 1.610624 GCTTTGAATGGTCGTCTCCCA 60.611 52.381 0.00 0.00 36.16 4.37
174 178 7.770897 CCATCTAGTTTGATGTAAAAGCTACCT 59.229 37.037 0.00 0.00 41.47 3.08
176 180 7.553044 ACCCATCTAGTTTGATGTAAAAGCTAC 59.447 37.037 0.00 0.00 41.47 3.58
179 183 6.759497 ACCCATCTAGTTTGATGTAAAAGC 57.241 37.500 0.00 0.00 41.47 3.51
194 198 8.739039 CAGTTCAAATATGTCAAAACCCATCTA 58.261 33.333 0.00 0.00 0.00 1.98
195 199 7.309990 CCAGTTCAAATATGTCAAAACCCATCT 60.310 37.037 0.00 0.00 0.00 2.90
201 205 5.856455 CCGTCCAGTTCAAATATGTCAAAAC 59.144 40.000 0.00 0.00 0.00 2.43
227 231 8.199449 CGGTCATTTAGGTTAGGTTTACATAGA 58.801 37.037 0.00 0.00 0.00 1.98
259 263 3.712907 CGGACATGGGGAACGGGT 61.713 66.667 0.00 0.00 0.00 5.28
326 336 1.478916 TCATCGTCGGTCAATTAGCCA 59.521 47.619 0.00 0.00 0.00 4.75
383 394 1.694696 GGATCCGAGAAAGGCCACTAT 59.305 52.381 5.01 0.00 0.00 2.12
384 395 1.120530 GGATCCGAGAAAGGCCACTA 58.879 55.000 5.01 0.00 0.00 2.74
385 396 0.909610 TGGATCCGAGAAAGGCCACT 60.910 55.000 5.01 0.14 0.00 4.00
394 405 1.945354 GCCGACACTTGGATCCGAGA 61.945 60.000 32.26 8.93 0.00 4.04
407 418 2.782222 GCATAGGAGGTCGCCGACA 61.782 63.158 20.08 0.00 33.68 4.35
409 420 3.592814 CGCATAGGAGGTCGCCGA 61.593 66.667 0.00 0.00 0.00 5.54
421 432 1.024271 GCAAGAAAGGATGGCGCATA 58.976 50.000 10.83 0.00 0.00 3.14
430 441 1.064017 ACCACCAACAGCAAGAAAGGA 60.064 47.619 0.00 0.00 0.00 3.36
431 442 1.067516 CACCACCAACAGCAAGAAAGG 59.932 52.381 0.00 0.00 0.00 3.11
464 475 4.351938 CCACGACCACGAAGCCGA 62.352 66.667 0.00 0.00 42.66 5.54
532 543 3.673338 CGGCGAATGATGTATACGACAAT 59.327 43.478 0.00 0.00 42.78 2.71
536 547 1.667756 GGCGGCGAATGATGTATACGA 60.668 52.381 12.98 0.00 0.00 3.43
544 555 1.665916 CGATGAGGCGGCGAATGAT 60.666 57.895 12.98 0.00 0.00 2.45
570 581 3.553109 GCGGTTAGAAGCCTCCTTT 57.447 52.632 0.00 0.00 0.00 3.11
605 618 4.988598 CCACCGCGACTGTTGGCT 62.989 66.667 8.23 0.00 0.00 4.75
612 625 2.261671 GTGACATCCACCGCGACT 59.738 61.111 8.23 0.00 39.86 4.18
628 641 4.779966 TCCTCTCGCTCCGCTCGT 62.780 66.667 0.00 0.00 0.00 4.18
629 642 4.244802 GTCCTCTCGCTCCGCTCG 62.245 72.222 0.00 0.00 0.00 5.03
631 644 2.826738 GAGTCCTCTCGCTCCGCT 60.827 66.667 0.00 0.00 0.00 5.52
747 761 1.116536 TGCCGACCAGGAGTACAACA 61.117 55.000 0.00 0.00 45.00 3.33
788 802 6.825213 TCTCCTTACCAAATTGAGATGACATG 59.175 38.462 0.00 0.00 0.00 3.21
875 889 0.249489 GCGTCAGTCACCTCTTGTGT 60.249 55.000 0.00 0.00 45.61 3.72
946 960 2.034376 AGAGAGAGACGCGGTGGT 59.966 61.111 12.47 0.00 0.00 4.16
957 971 1.518367 GGGAGGGAGAGAGAGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
958 972 0.478507 GGGGAGGGAGAGAGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
1045 1097 3.775654 GTGGAGAGAGGTGGCGGG 61.776 72.222 0.00 0.00 0.00 6.13
1048 1100 2.665603 GTGGTGGAGAGAGGTGGC 59.334 66.667 0.00 0.00 0.00 5.01
1086 1157 2.978824 CGGGGGAGTGTGTAGTGG 59.021 66.667 0.00 0.00 0.00 4.00
1411 1503 3.119096 GGACTTTCCGGCGAGTGC 61.119 66.667 9.30 12.39 41.71 4.40
1413 1505 1.292541 GAAGGACTTTCCGGCGAGT 59.707 57.895 9.30 3.30 42.75 4.18
1422 1514 2.420687 GGATCTGATGCGGAAGGACTTT 60.421 50.000 0.00 0.00 0.00 2.66
1435 1527 4.021280 CAGATTGGAGACGATGGATCTGAT 60.021 45.833 5.46 0.00 41.71 2.90
1436 1528 3.320256 CAGATTGGAGACGATGGATCTGA 59.680 47.826 5.46 0.00 41.71 3.27
1479 1574 3.515286 TTCTCGTAGGAGCCGCCG 61.515 66.667 7.59 0.00 43.43 6.46
1480 1575 2.104530 GTTCTCGTAGGAGCCGCC 59.895 66.667 7.59 0.00 40.26 6.13
1481 1576 2.104530 GGTTCTCGTAGGAGCCGC 59.895 66.667 7.59 0.77 40.26 6.53
1597 1697 0.178068 AGCTTGGTGATACCGCGATT 59.822 50.000 8.23 0.00 42.58 3.34
1670 2125 1.707106 TTGTCCAGTAGTCCCGTTCA 58.293 50.000 0.00 0.00 0.00 3.18
1696 2151 5.129485 TCCAGGAAAAGATTCTCGCTAATCT 59.871 40.000 6.33 6.33 45.91 2.40
1828 2283 2.543777 TACCAATTCTCATAGCCCGC 57.456 50.000 0.00 0.00 0.00 6.13
1829 2284 3.809832 CAGTTACCAATTCTCATAGCCCG 59.190 47.826 0.00 0.00 0.00 6.13
1857 2313 1.864711 GAGTGTAGACTTTGTTGCGCA 59.135 47.619 5.66 5.66 30.16 6.09
1859 2315 4.201628 GCATAGAGTGTAGACTTTGTTGCG 60.202 45.833 0.00 0.00 30.16 4.85
1870 2326 4.098654 ACCAGCTTACTGCATAGAGTGTAG 59.901 45.833 0.00 0.00 45.03 2.74
1882 2338 7.041098 AGTGAGACAAAAATTACCAGCTTACTG 60.041 37.037 0.00 0.00 44.05 2.74
1899 2355 3.281727 AGGCAAAGAACAGTGAGACAA 57.718 42.857 0.00 0.00 0.00 3.18
1907 2363 4.074970 ACATCCAGTTAGGCAAAGAACAG 58.925 43.478 0.00 0.00 37.29 3.16
1930 2387 4.686972 TCAGAAGTCAACTGAGACAACAG 58.313 43.478 0.00 0.00 40.98 3.16
1939 2396 2.618709 GTTGGGGTTCAGAAGTCAACTG 59.381 50.000 12.47 0.00 33.77 3.16
1940 2397 2.422945 GGTTGGGGTTCAGAAGTCAACT 60.423 50.000 16.42 0.00 35.97 3.16
1941 2398 1.954382 GGTTGGGGTTCAGAAGTCAAC 59.046 52.381 11.76 11.76 35.23 3.18
1942 2399 1.566703 TGGTTGGGGTTCAGAAGTCAA 59.433 47.619 0.00 0.00 0.00 3.18
1944 2401 1.143073 ACTGGTTGGGGTTCAGAAGTC 59.857 52.381 0.00 0.00 33.19 3.01
1946 2403 1.956477 CAACTGGTTGGGGTTCAGAAG 59.044 52.381 5.64 0.00 36.95 2.85
1955 2413 5.336690 CCAAATAAGACATCAACTGGTTGGG 60.337 44.000 12.65 8.50 40.78 4.12
1960 2418 7.331026 TCTCTACCAAATAAGACATCAACTGG 58.669 38.462 0.00 0.00 0.00 4.00
1961 2419 8.777865 TTCTCTACCAAATAAGACATCAACTG 57.222 34.615 0.00 0.00 0.00 3.16
1966 2424 8.608317 GCTTTCTTCTCTACCAAATAAGACATC 58.392 37.037 0.00 0.00 0.00 3.06
1973 2431 7.394016 TGTGATGCTTTCTTCTCTACCAAATA 58.606 34.615 0.00 0.00 0.00 1.40
1975 2433 5.620206 TGTGATGCTTTCTTCTCTACCAAA 58.380 37.500 0.00 0.00 0.00 3.28
1977 2435 4.890158 TGTGATGCTTTCTTCTCTACCA 57.110 40.909 0.00 0.00 0.00 3.25
1996 2454 7.147966 TGCTTATCATTTTCAGAGATTGCATGT 60.148 33.333 0.00 0.00 30.75 3.21
1998 2456 7.342769 TGCTTATCATTTTCAGAGATTGCAT 57.657 32.000 0.00 0.00 30.75 3.96
1999 2457 6.762702 TGCTTATCATTTTCAGAGATTGCA 57.237 33.333 0.00 0.00 32.12 4.08
2017 2475 8.349245 CGGAAACACAAATATATTCCATGCTTA 58.651 33.333 0.00 0.00 39.59 3.09
2019 2477 6.545666 TCGGAAACACAAATATATTCCATGCT 59.454 34.615 0.00 0.00 39.59 3.79
2021 2479 7.930217 AGTCGGAAACACAAATATATTCCATG 58.070 34.615 0.00 0.82 39.59 3.66
2022 2480 8.519799 AAGTCGGAAACACAAATATATTCCAT 57.480 30.769 0.00 0.00 39.59 3.41
2023 2481 7.931578 AAGTCGGAAACACAAATATATTCCA 57.068 32.000 0.00 0.00 39.59 3.53
2024 2482 9.878599 CATAAGTCGGAAACACAAATATATTCC 57.121 33.333 0.00 0.00 36.92 3.01
2031 2489 8.842280 TCTTAAACATAAGTCGGAAACACAAAT 58.158 29.630 0.00 0.00 0.00 2.32
2032 2490 8.211116 TCTTAAACATAAGTCGGAAACACAAA 57.789 30.769 0.00 0.00 0.00 2.83
2035 2493 8.025243 TGATCTTAAACATAAGTCGGAAACAC 57.975 34.615 0.00 0.00 0.00 3.32
2036 2494 8.786826 ATGATCTTAAACATAAGTCGGAAACA 57.213 30.769 0.00 0.00 0.00 2.83
2037 2495 9.490663 CAATGATCTTAAACATAAGTCGGAAAC 57.509 33.333 0.00 0.00 0.00 2.78
2051 2510 8.259411 CCCACATCCAATTTCAATGATCTTAAA 58.741 33.333 0.00 0.00 0.00 1.52
2062 2521 3.471430 ACATCCCCACATCCAATTTCA 57.529 42.857 0.00 0.00 0.00 2.69
2063 2522 5.139727 TGATACATCCCCACATCCAATTTC 58.860 41.667 0.00 0.00 0.00 2.17
2067 2526 4.599720 TTTGATACATCCCCACATCCAA 57.400 40.909 0.00 0.00 0.00 3.53
2075 2534 6.773976 TCAACAGAAATTTGATACATCCCC 57.226 37.500 0.00 0.00 0.00 4.81
2078 2537 9.132521 CTGGTTTCAACAGAAATTTGATACATC 57.867 33.333 0.00 0.00 36.93 3.06
2079 2538 8.859090 TCTGGTTTCAACAGAAATTTGATACAT 58.141 29.630 0.00 0.00 41.66 2.29
2084 2543 5.163457 GGGTCTGGTTTCAACAGAAATTTGA 60.163 40.000 0.00 0.00 45.66 2.69
2085 2544 5.049828 GGGTCTGGTTTCAACAGAAATTTG 58.950 41.667 0.00 0.00 45.66 2.32
2088 2547 3.909732 TGGGTCTGGTTTCAACAGAAAT 58.090 40.909 0.00 0.00 45.66 2.17
2102 2561 2.294512 GCTTTCTGGTTCTTTGGGTCTG 59.705 50.000 0.00 0.00 0.00 3.51
2110 2570 5.921962 AGTTCTTTTGCTTTCTGGTTCTT 57.078 34.783 0.00 0.00 0.00 2.52
2132 2592 8.707796 TTGTTAATGAAAACCAATGTAGGGTA 57.292 30.769 0.00 0.00 37.77 3.69
2236 2698 9.938280 ACTGCAATTTCACTACTAACTTACATA 57.062 29.630 0.00 0.00 0.00 2.29
2237 2699 8.848474 ACTGCAATTTCACTACTAACTTACAT 57.152 30.769 0.00 0.00 0.00 2.29
2238 2700 8.671384 AACTGCAATTTCACTACTAACTTACA 57.329 30.769 0.00 0.00 0.00 2.41
2239 2701 8.770828 TGAACTGCAATTTCACTACTAACTTAC 58.229 33.333 6.36 0.00 0.00 2.34
2240 2702 8.896320 TGAACTGCAATTTCACTACTAACTTA 57.104 30.769 6.36 0.00 0.00 2.24
2241 2703 7.801716 TGAACTGCAATTTCACTACTAACTT 57.198 32.000 6.36 0.00 0.00 2.66
2242 2704 7.801716 TTGAACTGCAATTTCACTACTAACT 57.198 32.000 9.43 0.00 32.65 2.24
2243 2705 9.463443 AATTTGAACTGCAATTTCACTACTAAC 57.537 29.630 9.43 0.00 36.15 2.34
2246 2708 9.683069 CTAAATTTGAACTGCAATTTCACTACT 57.317 29.630 9.43 0.46 36.15 2.57
2247 2709 9.677567 TCTAAATTTGAACTGCAATTTCACTAC 57.322 29.630 9.43 0.00 36.15 2.73
2248 2710 9.677567 GTCTAAATTTGAACTGCAATTTCACTA 57.322 29.630 9.43 3.08 36.15 2.74
2249 2711 8.416329 AGTCTAAATTTGAACTGCAATTTCACT 58.584 29.630 9.43 4.63 36.15 3.41
2250 2712 8.579682 AGTCTAAATTTGAACTGCAATTTCAC 57.420 30.769 9.43 2.79 36.15 3.18
2251 2713 8.632679 AGAGTCTAAATTTGAACTGCAATTTCA 58.367 29.630 10.86 6.36 36.15 2.69
2252 2714 8.909671 CAGAGTCTAAATTTGAACTGCAATTTC 58.090 33.333 10.86 1.47 36.15 2.17
2253 2715 8.416329 ACAGAGTCTAAATTTGAACTGCAATTT 58.584 29.630 10.86 0.00 36.15 1.82
2254 2716 7.945134 ACAGAGTCTAAATTTGAACTGCAATT 58.055 30.769 10.86 0.00 36.15 2.32
2255 2717 7.516198 ACAGAGTCTAAATTTGAACTGCAAT 57.484 32.000 10.86 0.00 36.15 3.56
2256 2718 6.942532 ACAGAGTCTAAATTTGAACTGCAA 57.057 33.333 10.86 0.00 33.88 4.08
2257 2719 7.441836 TCTACAGAGTCTAAATTTGAACTGCA 58.558 34.615 10.86 0.00 0.00 4.41
2258 2720 7.891183 TCTACAGAGTCTAAATTTGAACTGC 57.109 36.000 10.86 4.88 0.00 4.40
2275 2737 9.905713 AGCCAACAGAAATATATTTTCTACAGA 57.094 29.630 11.92 0.00 36.69 3.41
2276 2738 9.941664 CAGCCAACAGAAATATATTTTCTACAG 57.058 33.333 11.92 2.85 36.69 2.74
2277 2739 9.461312 ACAGCCAACAGAAATATATTTTCTACA 57.539 29.630 11.92 0.00 36.69 2.74
2287 2749 9.243105 AGTTAAACATACAGCCAACAGAAATAT 57.757 29.630 0.00 0.00 0.00 1.28
2288 2750 8.630054 AGTTAAACATACAGCCAACAGAAATA 57.370 30.769 0.00 0.00 0.00 1.40
2289 2751 7.524717 AGTTAAACATACAGCCAACAGAAAT 57.475 32.000 0.00 0.00 0.00 2.17
2290 2752 6.952773 AGTTAAACATACAGCCAACAGAAA 57.047 33.333 0.00 0.00 0.00 2.52
2291 2753 6.952773 AAGTTAAACATACAGCCAACAGAA 57.047 33.333 0.00 0.00 0.00 3.02
2292 2754 6.952773 AAAGTTAAACATACAGCCAACAGA 57.047 33.333 0.00 0.00 0.00 3.41
2293 2755 7.516627 GCAAAAAGTTAAACATACAGCCAACAG 60.517 37.037 0.00 0.00 0.00 3.16
2294 2756 6.256757 GCAAAAAGTTAAACATACAGCCAACA 59.743 34.615 0.00 0.00 0.00 3.33
2295 2757 6.478673 AGCAAAAAGTTAAACATACAGCCAAC 59.521 34.615 0.00 0.00 0.00 3.77
2296 2758 6.578023 AGCAAAAAGTTAAACATACAGCCAA 58.422 32.000 0.00 0.00 0.00 4.52
2297 2759 6.155475 AGCAAAAAGTTAAACATACAGCCA 57.845 33.333 0.00 0.00 0.00 4.75
2298 2760 7.477144 AAAGCAAAAAGTTAAACATACAGCC 57.523 32.000 0.00 0.00 0.00 4.85
2299 2761 8.061857 GGAAAAGCAAAAAGTTAAACATACAGC 58.938 33.333 0.00 0.00 0.00 4.40
2300 2762 8.547894 GGGAAAAGCAAAAAGTTAAACATACAG 58.452 33.333 0.00 0.00 0.00 2.74
2301 2763 7.496263 GGGGAAAAGCAAAAAGTTAAACATACA 59.504 33.333 0.00 0.00 0.00 2.29
2302 2764 7.041644 GGGGGAAAAGCAAAAAGTTAAACATAC 60.042 37.037 0.00 0.00 0.00 2.39
2303 2765 6.993308 GGGGGAAAAGCAAAAAGTTAAACATA 59.007 34.615 0.00 0.00 0.00 2.29
2304 2766 5.825679 GGGGGAAAAGCAAAAAGTTAAACAT 59.174 36.000 0.00 0.00 0.00 2.71
2305 2767 5.186942 GGGGGAAAAGCAAAAAGTTAAACA 58.813 37.500 0.00 0.00 0.00 2.83
2306 2768 5.744666 GGGGGAAAAGCAAAAAGTTAAAC 57.255 39.130 0.00 0.00 0.00 2.01
2325 2787 1.368374 TCTTTGAAGGGTACAGGGGG 58.632 55.000 0.00 0.00 0.00 5.40
2326 2788 2.576191 TGATCTTTGAAGGGTACAGGGG 59.424 50.000 0.00 0.00 0.00 4.79
2327 2789 4.301072 TTGATCTTTGAAGGGTACAGGG 57.699 45.455 0.00 0.00 0.00 4.45
2328 2790 7.995488 AGATAATTGATCTTTGAAGGGTACAGG 59.005 37.037 0.00 0.00 42.70 4.00
2329 2791 8.970859 AGATAATTGATCTTTGAAGGGTACAG 57.029 34.615 0.00 0.00 42.70 2.74
2382 2844 9.301153 GCTTTTCACAATTAAAAGTTTCTCAGA 57.699 29.630 11.64 0.00 43.01 3.27
2383 2845 9.305925 AGCTTTTCACAATTAAAAGTTTCTCAG 57.694 29.630 11.64 0.00 43.01 3.35
2384 2846 9.086336 CAGCTTTTCACAATTAAAAGTTTCTCA 57.914 29.630 11.64 0.00 43.01 3.27
2385 2847 9.301153 TCAGCTTTTCACAATTAAAAGTTTCTC 57.699 29.630 11.64 0.00 43.01 2.87
2386 2848 9.087424 GTCAGCTTTTCACAATTAAAAGTTTCT 57.913 29.630 11.64 1.43 43.01 2.52
2387 2849 8.328146 GGTCAGCTTTTCACAATTAAAAGTTTC 58.672 33.333 11.64 4.28 43.01 2.78
2388 2850 8.040727 AGGTCAGCTTTTCACAATTAAAAGTTT 58.959 29.630 11.64 0.00 43.01 2.66
2389 2851 7.555965 AGGTCAGCTTTTCACAATTAAAAGTT 58.444 30.769 11.64 5.12 43.01 2.66
2390 2852 7.112452 AGGTCAGCTTTTCACAATTAAAAGT 57.888 32.000 11.64 0.26 43.01 2.66
2391 2853 9.346725 GATAGGTCAGCTTTTCACAATTAAAAG 57.653 33.333 7.33 7.33 43.61 2.27
2392 2854 9.077885 AGATAGGTCAGCTTTTCACAATTAAAA 57.922 29.630 0.00 0.00 0.00 1.52
2393 2855 8.514594 CAGATAGGTCAGCTTTTCACAATTAAA 58.485 33.333 0.00 0.00 0.00 1.52
2394 2856 7.882791 TCAGATAGGTCAGCTTTTCACAATTAA 59.117 33.333 0.00 0.00 0.00 1.40
2395 2857 7.394016 TCAGATAGGTCAGCTTTTCACAATTA 58.606 34.615 0.00 0.00 0.00 1.40
2396 2858 6.240894 TCAGATAGGTCAGCTTTTCACAATT 58.759 36.000 0.00 0.00 0.00 2.32
2397 2859 5.809001 TCAGATAGGTCAGCTTTTCACAAT 58.191 37.500 0.00 0.00 0.00 2.71
2398 2860 5.012046 TCTCAGATAGGTCAGCTTTTCACAA 59.988 40.000 0.00 0.00 0.00 3.33
2399 2861 4.528206 TCTCAGATAGGTCAGCTTTTCACA 59.472 41.667 0.00 0.00 0.00 3.58
2400 2862 4.867608 GTCTCAGATAGGTCAGCTTTTCAC 59.132 45.833 0.00 0.00 0.00 3.18
2401 2863 4.774726 AGTCTCAGATAGGTCAGCTTTTCA 59.225 41.667 0.00 0.00 0.00 2.69
2402 2864 5.337578 AGTCTCAGATAGGTCAGCTTTTC 57.662 43.478 0.00 0.00 0.00 2.29
2403 2865 6.859112 TTAGTCTCAGATAGGTCAGCTTTT 57.141 37.500 0.00 0.00 0.00 2.27
2404 2866 6.629291 GCTTTAGTCTCAGATAGGTCAGCTTT 60.629 42.308 0.00 0.00 0.00 3.51
2405 2867 5.163457 GCTTTAGTCTCAGATAGGTCAGCTT 60.163 44.000 0.00 0.00 0.00 3.74
2406 2868 4.340950 GCTTTAGTCTCAGATAGGTCAGCT 59.659 45.833 0.00 0.00 0.00 4.24
2407 2869 4.098654 TGCTTTAGTCTCAGATAGGTCAGC 59.901 45.833 0.00 0.00 0.00 4.26
2408 2870 5.843673 TGCTTTAGTCTCAGATAGGTCAG 57.156 43.478 0.00 0.00 0.00 3.51
2409 2871 5.893824 TCATGCTTTAGTCTCAGATAGGTCA 59.106 40.000 0.00 0.00 0.00 4.02
2410 2872 6.212955 GTCATGCTTTAGTCTCAGATAGGTC 58.787 44.000 0.00 0.00 0.00 3.85
2411 2873 5.069781 GGTCATGCTTTAGTCTCAGATAGGT 59.930 44.000 0.00 0.00 0.00 3.08
2412 2874 5.069648 TGGTCATGCTTTAGTCTCAGATAGG 59.930 44.000 0.00 0.00 0.00 2.57
2413 2875 6.154203 TGGTCATGCTTTAGTCTCAGATAG 57.846 41.667 0.00 0.00 0.00 2.08
2414 2876 6.070824 TGTTGGTCATGCTTTAGTCTCAGATA 60.071 38.462 0.00 0.00 0.00 1.98
2415 2877 5.181748 GTTGGTCATGCTTTAGTCTCAGAT 58.818 41.667 0.00 0.00 0.00 2.90
2416 2878 4.040339 TGTTGGTCATGCTTTAGTCTCAGA 59.960 41.667 0.00 0.00 0.00 3.27
2417 2879 4.318332 TGTTGGTCATGCTTTAGTCTCAG 58.682 43.478 0.00 0.00 0.00 3.35
2418 2880 4.350368 TGTTGGTCATGCTTTAGTCTCA 57.650 40.909 0.00 0.00 0.00 3.27
2419 2881 5.689383 TTTGTTGGTCATGCTTTAGTCTC 57.311 39.130 0.00 0.00 0.00 3.36
2420 2882 5.769662 TCATTTGTTGGTCATGCTTTAGTCT 59.230 36.000 0.00 0.00 0.00 3.24
2421 2883 6.012658 TCATTTGTTGGTCATGCTTTAGTC 57.987 37.500 0.00 0.00 0.00 2.59
2422 2884 6.403866 TTCATTTGTTGGTCATGCTTTAGT 57.596 33.333 0.00 0.00 0.00 2.24
2423 2885 7.894376 AATTCATTTGTTGGTCATGCTTTAG 57.106 32.000 0.00 0.00 0.00 1.85
2424 2886 9.941325 ATTAATTCATTTGTTGGTCATGCTTTA 57.059 25.926 0.00 0.00 0.00 1.85
2425 2887 8.851541 ATTAATTCATTTGTTGGTCATGCTTT 57.148 26.923 0.00 0.00 0.00 3.51
2426 2888 8.316214 AGATTAATTCATTTGTTGGTCATGCTT 58.684 29.630 0.00 0.00 0.00 3.91
2427 2889 7.844009 AGATTAATTCATTTGTTGGTCATGCT 58.156 30.769 0.00 0.00 0.00 3.79
2428 2890 8.483307 AAGATTAATTCATTTGTTGGTCATGC 57.517 30.769 0.00 0.00 0.00 4.06
2466 2928 9.933723 GTTGGTTTAGTTCTAACTATTAGGACA 57.066 33.333 9.22 0.00 43.01 4.02
2467 2929 9.933723 TGTTGGTTTAGTTCTAACTATTAGGAC 57.066 33.333 3.52 0.00 41.25 3.85
2473 2935 9.877178 CATCTCTGTTGGTTTAGTTCTAACTAT 57.123 33.333 3.52 0.00 40.87 2.12
2474 2936 8.311836 CCATCTCTGTTGGTTTAGTTCTAACTA 58.688 37.037 0.00 0.00 40.37 2.24
2475 2937 7.162082 CCATCTCTGTTGGTTTAGTTCTAACT 58.838 38.462 0.39 0.39 42.91 2.24
2476 2938 6.128254 GCCATCTCTGTTGGTTTAGTTCTAAC 60.128 42.308 0.00 0.00 36.57 2.34
2477 2939 5.938125 GCCATCTCTGTTGGTTTAGTTCTAA 59.062 40.000 0.00 0.00 36.57 2.10
2478 2940 5.012664 TGCCATCTCTGTTGGTTTAGTTCTA 59.987 40.000 0.00 0.00 36.57 2.10
2479 2941 4.202461 TGCCATCTCTGTTGGTTTAGTTCT 60.202 41.667 0.00 0.00 36.57 3.01
2480 2942 4.072131 TGCCATCTCTGTTGGTTTAGTTC 58.928 43.478 0.00 0.00 36.57 3.01
2481 2943 4.098914 TGCCATCTCTGTTGGTTTAGTT 57.901 40.909 0.00 0.00 36.57 2.24
2482 2944 3.788227 TGCCATCTCTGTTGGTTTAGT 57.212 42.857 0.00 0.00 36.57 2.24
2483 2945 6.757897 TTAATGCCATCTCTGTTGGTTTAG 57.242 37.500 0.00 0.00 36.57 1.85
2484 2946 6.719370 AGTTTAATGCCATCTCTGTTGGTTTA 59.281 34.615 0.00 0.00 36.57 2.01
2485 2947 5.539955 AGTTTAATGCCATCTCTGTTGGTTT 59.460 36.000 0.00 0.00 36.57 3.27
2486 2948 5.047802 CAGTTTAATGCCATCTCTGTTGGTT 60.048 40.000 0.00 0.00 36.57 3.67
2487 2949 4.460382 CAGTTTAATGCCATCTCTGTTGGT 59.540 41.667 0.00 0.00 36.57 3.67
2488 2950 4.460382 ACAGTTTAATGCCATCTCTGTTGG 59.540 41.667 0.00 0.00 37.31 3.77
2489 2951 5.633830 ACAGTTTAATGCCATCTCTGTTG 57.366 39.130 0.00 0.00 31.95 3.33
2490 2952 6.543831 GGATACAGTTTAATGCCATCTCTGTT 59.456 38.462 0.00 0.00 36.36 3.16
2491 2953 6.058183 GGATACAGTTTAATGCCATCTCTGT 58.942 40.000 0.00 0.00 38.10 3.41
2492 2954 6.057533 TGGATACAGTTTAATGCCATCTCTG 58.942 40.000 0.00 0.00 46.17 3.35
2493 2955 6.252599 TGGATACAGTTTAATGCCATCTCT 57.747 37.500 0.00 0.00 46.17 3.10
2521 2983 9.919348 GCTGCCAAAATATACATGTAATTTTTG 57.081 29.630 28.60 28.60 32.05 2.44
2522 2984 9.664332 TGCTGCCAAAATATACATGTAATTTTT 57.336 25.926 22.42 19.96 32.05 1.94
2523 2985 9.664332 TTGCTGCCAAAATATACATGTAATTTT 57.336 25.926 20.83 20.83 34.09 1.82
2524 2986 9.664332 TTTGCTGCCAAAATATACATGTAATTT 57.336 25.926 10.14 13.21 37.97 1.82
2525 2987 9.097257 GTTTGCTGCCAAAATATACATGTAATT 57.903 29.630 10.14 8.28 42.19 1.40
2526 2988 8.477256 AGTTTGCTGCCAAAATATACATGTAAT 58.523 29.630 10.14 2.46 42.19 1.89
2527 2989 7.835822 AGTTTGCTGCCAAAATATACATGTAA 58.164 30.769 10.14 0.00 42.19 2.41
2528 2990 7.403312 AGTTTGCTGCCAAAATATACATGTA 57.597 32.000 8.27 8.27 42.19 2.29
2529 2991 6.284891 AGTTTGCTGCCAAAATATACATGT 57.715 33.333 2.69 2.69 42.19 3.21
2530 2992 6.591062 ACAAGTTTGCTGCCAAAATATACATG 59.409 34.615 0.00 0.00 42.19 3.21
2531 2993 6.700352 ACAAGTTTGCTGCCAAAATATACAT 58.300 32.000 0.00 0.00 42.19 2.29
2532 2994 6.095432 ACAAGTTTGCTGCCAAAATATACA 57.905 33.333 0.00 0.00 42.19 2.29
2533 2995 5.286082 CGACAAGTTTGCTGCCAAAATATAC 59.714 40.000 0.00 0.00 42.19 1.47
2534 2996 5.182190 TCGACAAGTTTGCTGCCAAAATATA 59.818 36.000 0.00 0.00 42.19 0.86
2535 2997 4.022416 TCGACAAGTTTGCTGCCAAAATAT 60.022 37.500 0.00 0.00 42.19 1.28
2536 2998 3.316588 TCGACAAGTTTGCTGCCAAAATA 59.683 39.130 0.00 0.00 42.19 1.40
2537 2999 2.100584 TCGACAAGTTTGCTGCCAAAAT 59.899 40.909 0.00 0.00 42.19 1.82
2538 3000 1.474478 TCGACAAGTTTGCTGCCAAAA 59.526 42.857 0.00 0.00 42.19 2.44
2539 3001 1.098869 TCGACAAGTTTGCTGCCAAA 58.901 45.000 0.00 0.00 38.56 3.28
2540 3002 1.317613 ATCGACAAGTTTGCTGCCAA 58.682 45.000 0.00 0.00 0.00 4.52
2541 3003 1.266718 GAATCGACAAGTTTGCTGCCA 59.733 47.619 0.00 0.00 0.00 4.92
2542 3004 1.725931 CGAATCGACAAGTTTGCTGCC 60.726 52.381 0.00 0.00 0.00 4.85
2543 3005 1.194547 TCGAATCGACAAGTTTGCTGC 59.805 47.619 0.00 0.00 0.00 5.25
2544 3006 3.519908 TTCGAATCGACAAGTTTGCTG 57.480 42.857 4.25 0.00 34.89 4.41
2545 3007 4.545823 TTTTCGAATCGACAAGTTTGCT 57.454 36.364 4.25 0.00 34.89 3.91
2546 3008 4.909305 TGATTTTCGAATCGACAAGTTTGC 59.091 37.500 4.25 0.00 34.89 3.68
2547 3009 6.129457 GGTTGATTTTCGAATCGACAAGTTTG 60.129 38.462 17.06 0.00 42.63 2.93
2548 3010 5.912955 GGTTGATTTTCGAATCGACAAGTTT 59.087 36.000 17.06 0.00 42.63 2.66
2549 3011 5.238650 AGGTTGATTTTCGAATCGACAAGTT 59.761 36.000 17.06 0.00 42.63 2.66
2550 3012 4.755123 AGGTTGATTTTCGAATCGACAAGT 59.245 37.500 17.06 0.24 42.63 3.16
2551 3013 5.283060 AGGTTGATTTTCGAATCGACAAG 57.717 39.130 17.06 0.00 42.63 3.16
2552 3014 4.143200 CGAGGTTGATTTTCGAATCGACAA 60.143 41.667 17.06 5.64 42.63 3.18
2553 3015 3.366724 CGAGGTTGATTTTCGAATCGACA 59.633 43.478 17.06 0.00 42.63 4.35
2554 3016 3.367025 ACGAGGTTGATTTTCGAATCGAC 59.633 43.478 17.44 13.58 40.98 4.20
2555 3017 3.581755 ACGAGGTTGATTTTCGAATCGA 58.418 40.909 17.44 0.00 37.73 3.59
2556 3018 3.991605 ACGAGGTTGATTTTCGAATCG 57.008 42.857 10.90 10.90 37.73 3.34
2557 3019 7.685594 AGATTTACGAGGTTGATTTTCGAATC 58.314 34.615 0.00 0.00 37.73 2.52
2558 3020 7.611213 AGATTTACGAGGTTGATTTTCGAAT 57.389 32.000 0.00 0.00 37.73 3.34
2559 3021 7.599621 TGTAGATTTACGAGGTTGATTTTCGAA 59.400 33.333 0.00 0.00 37.73 3.71
2560 3022 7.092079 TGTAGATTTACGAGGTTGATTTTCGA 58.908 34.615 0.00 0.00 37.73 3.71
2561 3023 7.285783 TGTAGATTTACGAGGTTGATTTTCG 57.714 36.000 0.00 0.00 40.02 3.46
2562 3024 9.543018 CTTTGTAGATTTACGAGGTTGATTTTC 57.457 33.333 0.00 0.00 32.21 2.29
2563 3025 9.063615 ACTTTGTAGATTTACGAGGTTGATTTT 57.936 29.630 0.00 0.00 31.40 1.82
2564 3026 8.617290 ACTTTGTAGATTTACGAGGTTGATTT 57.383 30.769 0.00 0.00 31.40 2.17
2565 3027 8.617290 AACTTTGTAGATTTACGAGGTTGATT 57.383 30.769 9.56 0.00 40.21 2.57
2566 3028 8.095169 AGAACTTTGTAGATTTACGAGGTTGAT 58.905 33.333 13.84 2.82 41.18 2.57
2567 3029 7.384115 CAGAACTTTGTAGATTTACGAGGTTGA 59.616 37.037 13.84 0.00 41.18 3.18
2568 3030 7.510630 CAGAACTTTGTAGATTTACGAGGTTG 58.489 38.462 13.84 1.06 41.18 3.77
2569 3031 6.147328 GCAGAACTTTGTAGATTTACGAGGTT 59.853 38.462 10.00 10.00 42.78 3.50
2570 3032 5.638234 GCAGAACTTTGTAGATTTACGAGGT 59.362 40.000 0.00 0.00 35.60 3.85
2571 3033 5.063564 GGCAGAACTTTGTAGATTTACGAGG 59.936 44.000 0.00 0.00 32.21 4.63
2572 3034 5.063564 GGGCAGAACTTTGTAGATTTACGAG 59.936 44.000 0.00 0.00 32.21 4.18
2573 3035 4.933400 GGGCAGAACTTTGTAGATTTACGA 59.067 41.667 0.00 0.00 32.21 3.43
2574 3036 4.693566 TGGGCAGAACTTTGTAGATTTACG 59.306 41.667 0.00 0.00 32.21 3.18
2575 3037 6.759497 ATGGGCAGAACTTTGTAGATTTAC 57.241 37.500 0.00 0.00 0.00 2.01
2576 3038 7.775053 AAATGGGCAGAACTTTGTAGATTTA 57.225 32.000 0.00 0.00 0.00 1.40
2577 3039 6.670695 AAATGGGCAGAACTTTGTAGATTT 57.329 33.333 0.00 0.00 0.00 2.17
2578 3040 6.041979 ACAAAATGGGCAGAACTTTGTAGATT 59.958 34.615 0.00 0.00 38.19 2.40
2579 3041 5.539955 ACAAAATGGGCAGAACTTTGTAGAT 59.460 36.000 0.00 0.00 38.19 1.98
2580 3042 4.892934 ACAAAATGGGCAGAACTTTGTAGA 59.107 37.500 0.00 0.00 38.19 2.59
2581 3043 5.200368 ACAAAATGGGCAGAACTTTGTAG 57.800 39.130 0.00 0.00 38.19 2.74
2582 3044 5.355596 CAACAAAATGGGCAGAACTTTGTA 58.644 37.500 0.00 0.00 38.82 2.41
2583 3045 4.190772 CAACAAAATGGGCAGAACTTTGT 58.809 39.130 0.00 0.00 40.87 2.83
2584 3046 3.002553 GCAACAAAATGGGCAGAACTTTG 59.997 43.478 0.00 0.00 34.04 2.77
2585 3047 3.118298 AGCAACAAAATGGGCAGAACTTT 60.118 39.130 0.00 0.00 0.00 2.66
2586 3048 2.435437 AGCAACAAAATGGGCAGAACTT 59.565 40.909 0.00 0.00 0.00 2.66
2587 3049 2.041701 AGCAACAAAATGGGCAGAACT 58.958 42.857 0.00 0.00 0.00 3.01
2588 3050 2.531522 AGCAACAAAATGGGCAGAAC 57.468 45.000 0.00 0.00 0.00 3.01
2589 3051 3.894427 TCTAAGCAACAAAATGGGCAGAA 59.106 39.130 0.00 0.00 0.00 3.02
2590 3052 3.495331 TCTAAGCAACAAAATGGGCAGA 58.505 40.909 0.00 0.00 0.00 4.26
2591 3053 3.841643 CTCTAAGCAACAAAATGGGCAG 58.158 45.455 0.00 0.00 0.00 4.85
2592 3054 2.029110 GCTCTAAGCAACAAAATGGGCA 60.029 45.455 0.00 0.00 41.89 5.36
2593 3055 2.232208 AGCTCTAAGCAACAAAATGGGC 59.768 45.455 1.29 0.00 45.56 5.36
2594 3056 3.507233 TCAGCTCTAAGCAACAAAATGGG 59.493 43.478 1.29 0.00 45.56 4.00
2595 3057 4.730657 CTCAGCTCTAAGCAACAAAATGG 58.269 43.478 1.29 0.00 45.56 3.16
2596 3058 4.082895 AGCTCAGCTCTAAGCAACAAAATG 60.083 41.667 13.21 0.00 45.56 2.32
2597 3059 4.077822 AGCTCAGCTCTAAGCAACAAAAT 58.922 39.130 13.21 0.00 45.56 1.82
2598 3060 3.480470 AGCTCAGCTCTAAGCAACAAAA 58.520 40.909 13.21 0.00 45.56 2.44
2599 3061 3.131709 AGCTCAGCTCTAAGCAACAAA 57.868 42.857 13.21 0.00 45.56 2.83
2600 3062 2.847327 AGCTCAGCTCTAAGCAACAA 57.153 45.000 13.21 0.00 45.56 2.83
2601 3063 5.127845 ACTTATAGCTCAGCTCTAAGCAACA 59.872 40.000 24.78 0.00 44.04 3.33
2602 3064 5.596845 ACTTATAGCTCAGCTCTAAGCAAC 58.403 41.667 24.78 0.00 44.04 4.17
2603 3065 5.596361 AGACTTATAGCTCAGCTCTAAGCAA 59.404 40.000 24.78 0.00 44.04 3.91
2604 3066 5.136828 AGACTTATAGCTCAGCTCTAAGCA 58.863 41.667 24.78 0.00 44.04 3.91
2605 3067 5.705609 AGACTTATAGCTCAGCTCTAAGC 57.294 43.478 24.78 18.72 44.04 3.09
2606 3068 6.855914 CGAAAGACTTATAGCTCAGCTCTAAG 59.144 42.308 23.74 23.74 44.98 2.18
2607 3069 6.730175 CGAAAGACTTATAGCTCAGCTCTAA 58.270 40.000 0.00 2.84 40.44 2.10
2608 3070 5.278071 GCGAAAGACTTATAGCTCAGCTCTA 60.278 44.000 0.00 0.00 40.44 2.43
2609 3071 4.499019 GCGAAAGACTTATAGCTCAGCTCT 60.499 45.833 0.00 0.00 40.44 4.09
2610 3072 3.733727 GCGAAAGACTTATAGCTCAGCTC 59.266 47.826 0.00 0.00 40.44 4.09
2611 3073 3.131223 TGCGAAAGACTTATAGCTCAGCT 59.869 43.478 3.60 3.60 43.41 4.24
2612 3074 3.448686 TGCGAAAGACTTATAGCTCAGC 58.551 45.455 0.00 0.00 0.00 4.26
2613 3075 4.026145 GCTTGCGAAAGACTTATAGCTCAG 60.026 45.833 7.54 0.00 0.00 3.35
2614 3076 3.865745 GCTTGCGAAAGACTTATAGCTCA 59.134 43.478 7.54 0.00 0.00 4.26
2615 3077 3.865745 TGCTTGCGAAAGACTTATAGCTC 59.134 43.478 7.54 0.00 0.00 4.09
2616 3078 3.619038 GTGCTTGCGAAAGACTTATAGCT 59.381 43.478 7.54 0.00 0.00 3.32
2617 3079 3.929414 GTGCTTGCGAAAGACTTATAGC 58.071 45.455 7.54 0.00 0.00 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.