Multiple sequence alignment - TraesCS6B01G085700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G085700 | chr6B | 100.000 | 2264 | 0 | 0 | 1 | 2264 | 62214393 | 62212130 | 0.000000e+00 | 4181.0 |
1 | TraesCS6B01G085700 | chr6B | 88.054 | 1038 | 79 | 20 | 481 | 1495 | 62179557 | 62178542 | 0.000000e+00 | 1188.0 |
2 | TraesCS6B01G085700 | chr6B | 87.805 | 656 | 38 | 18 | 1001 | 1636 | 62154925 | 62154292 | 0.000000e+00 | 730.0 |
3 | TraesCS6B01G085700 | chr6B | 85.542 | 332 | 17 | 15 | 1001 | 1320 | 62146401 | 62146089 | 3.630000e-83 | 318.0 |
4 | TraesCS6B01G085700 | chr6B | 90.710 | 183 | 14 | 3 | 2004 | 2186 | 62177066 | 62176887 | 8.080000e-60 | 241.0 |
5 | TraesCS6B01G085700 | chr6B | 85.577 | 208 | 16 | 3 | 62 | 255 | 404457978 | 404458185 | 2.950000e-49 | 206.0 |
6 | TraesCS6B01G085700 | chr6B | 82.857 | 210 | 16 | 11 | 740 | 932 | 62146744 | 62146538 | 1.080000e-38 | 171.0 |
7 | TraesCS6B01G085700 | chr6B | 89.051 | 137 | 12 | 3 | 2119 | 2253 | 62153372 | 62153237 | 1.390000e-37 | 167.0 |
8 | TraesCS6B01G085700 | chr6B | 86.620 | 142 | 13 | 2 | 1578 | 1715 | 62178387 | 62178248 | 3.890000e-33 | 152.0 |
9 | TraesCS6B01G085700 | chr6B | 92.727 | 55 | 4 | 0 | 565 | 619 | 62155920 | 62155866 | 1.860000e-11 | 80.5 |
10 | TraesCS6B01G085700 | chr6D | 85.291 | 1081 | 100 | 27 | 949 | 1996 | 28628453 | 28629507 | 0.000000e+00 | 1061.0 |
11 | TraesCS6B01G085700 | chr6D | 82.288 | 638 | 62 | 25 | 1001 | 1633 | 28634628 | 28635219 | 2.600000e-139 | 505.0 |
12 | TraesCS6B01G085700 | chr6D | 86.530 | 438 | 25 | 14 | 546 | 954 | 28627972 | 28628404 | 3.430000e-123 | 451.0 |
13 | TraesCS6B01G085700 | chr6D | 79.638 | 221 | 14 | 14 | 740 | 932 | 28634271 | 28634488 | 1.820000e-26 | 130.0 |
14 | TraesCS6B01G085700 | chr6D | 89.062 | 64 | 7 | 0 | 290 | 353 | 28626308 | 28626371 | 1.860000e-11 | 80.5 |
15 | TraesCS6B01G085700 | chr6A | 89.510 | 715 | 44 | 10 | 1581 | 2264 | 34069551 | 34068837 | 0.000000e+00 | 876.0 |
16 | TraesCS6B01G085700 | chr6A | 85.983 | 585 | 33 | 19 | 1001 | 1579 | 34071259 | 34070718 | 4.190000e-162 | 580.0 |
17 | TraesCS6B01G085700 | chr6A | 81.176 | 680 | 81 | 27 | 1000 | 1674 | 34039601 | 34038964 | 9.330000e-139 | 503.0 |
18 | TraesCS6B01G085700 | chr6A | 88.706 | 425 | 25 | 13 | 554 | 957 | 34071777 | 34071355 | 4.340000e-137 | 497.0 |
19 | TraesCS6B01G085700 | chr6A | 98.413 | 63 | 1 | 0 | 1 | 63 | 528925259 | 528925321 | 6.610000e-21 | 111.0 |
20 | TraesCS6B01G085700 | chr6A | 82.906 | 117 | 7 | 6 | 741 | 845 | 34039929 | 34039814 | 2.390000e-15 | 93.5 |
21 | TraesCS6B01G085700 | chr6A | 86.076 | 79 | 9 | 1 | 291 | 369 | 34073599 | 34073523 | 1.440000e-12 | 84.2 |
22 | TraesCS6B01G085700 | chr7A | 89.700 | 233 | 23 | 1 | 62 | 293 | 161336819 | 161337051 | 1.700000e-76 | 296.0 |
23 | TraesCS6B01G085700 | chr7A | 95.588 | 68 | 3 | 0 | 1 | 68 | 49811176 | 49811109 | 2.380000e-20 | 110.0 |
24 | TraesCS6B01G085700 | chr3B | 100.000 | 63 | 0 | 0 | 1 | 63 | 561887664 | 561887602 | 1.420000e-22 | 117.0 |
25 | TraesCS6B01G085700 | chr3B | 94.366 | 71 | 4 | 0 | 1 | 71 | 817667727 | 817667797 | 2.380000e-20 | 110.0 |
26 | TraesCS6B01G085700 | chr7B | 97.059 | 68 | 2 | 0 | 1 | 68 | 634289498 | 634289565 | 5.110000e-22 | 115.0 |
27 | TraesCS6B01G085700 | chr1A | 98.438 | 64 | 1 | 0 | 1 | 64 | 42602099 | 42602162 | 1.840000e-21 | 113.0 |
28 | TraesCS6B01G085700 | chr1A | 92.500 | 40 | 2 | 1 | 70 | 109 | 5827641 | 5827603 | 3.140000e-04 | 56.5 |
29 | TraesCS6B01G085700 | chr5D | 98.413 | 63 | 1 | 0 | 1 | 63 | 33841760 | 33841698 | 6.610000e-21 | 111.0 |
30 | TraesCS6B01G085700 | chr5B | 98.413 | 63 | 1 | 0 | 1 | 63 | 516550109 | 516550047 | 6.610000e-21 | 111.0 |
31 | TraesCS6B01G085700 | chr4B | 98.413 | 63 | 1 | 0 | 1 | 63 | 30856780 | 30856718 | 6.610000e-21 | 111.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G085700 | chr6B | 62212130 | 62214393 | 2263 | True | 4181.000000 | 4181 | 100.000000 | 1 | 2264 | 1 | chr6B.!!$R1 | 2263 |
1 | TraesCS6B01G085700 | chr6B | 62176887 | 62179557 | 2670 | True | 527.000000 | 1188 | 88.461333 | 481 | 2186 | 3 | chr6B.!!$R4 | 1705 |
2 | TraesCS6B01G085700 | chr6B | 62153237 | 62155920 | 2683 | True | 325.833333 | 730 | 89.861000 | 565 | 2253 | 3 | chr6B.!!$R3 | 1688 |
3 | TraesCS6B01G085700 | chr6B | 62146089 | 62146744 | 655 | True | 244.500000 | 318 | 84.199500 | 740 | 1320 | 2 | chr6B.!!$R2 | 580 |
4 | TraesCS6B01G085700 | chr6D | 28626308 | 28629507 | 3199 | False | 530.833333 | 1061 | 86.961000 | 290 | 1996 | 3 | chr6D.!!$F1 | 1706 |
5 | TraesCS6B01G085700 | chr6D | 28634271 | 28635219 | 948 | False | 317.500000 | 505 | 80.963000 | 740 | 1633 | 2 | chr6D.!!$F2 | 893 |
6 | TraesCS6B01G085700 | chr6A | 34068837 | 34073599 | 4762 | True | 509.300000 | 876 | 87.568750 | 291 | 2264 | 4 | chr6A.!!$R2 | 1973 |
7 | TraesCS6B01G085700 | chr6A | 34038964 | 34039929 | 965 | True | 298.250000 | 503 | 82.041000 | 741 | 1674 | 2 | chr6A.!!$R1 | 933 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
469 | 1966 | 0.031994 | AAATTGTTGCCGCACAGGAC | 59.968 | 50.0 | 0.0 | 0.0 | 45.0 | 3.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2157 | 8742 | 0.730834 | CTCGTGACCTTGAGCTGTCG | 60.731 | 60.0 | 0.0 | 0.0 | 34.18 | 4.35 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
24 | 25 | 5.975693 | ATTTGGTCAAAATTAGCCTCGAA | 57.024 | 34.783 | 0.00 | 0.00 | 34.72 | 3.71 |
25 | 26 | 5.776173 | TTTGGTCAAAATTAGCCTCGAAA | 57.224 | 34.783 | 0.00 | 0.00 | 0.00 | 3.46 |
26 | 27 | 5.776173 | TTGGTCAAAATTAGCCTCGAAAA | 57.224 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
27 | 28 | 5.776173 | TGGTCAAAATTAGCCTCGAAAAA | 57.224 | 34.783 | 0.00 | 0.00 | 0.00 | 1.94 |
28 | 29 | 5.525199 | TGGTCAAAATTAGCCTCGAAAAAC | 58.475 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
29 | 30 | 4.615541 | GGTCAAAATTAGCCTCGAAAAACG | 59.384 | 41.667 | 0.00 | 0.00 | 44.09 | 3.60 |
30 | 31 | 4.088071 | GTCAAAATTAGCCTCGAAAAACGC | 59.912 | 41.667 | 0.00 | 0.00 | 42.26 | 4.84 |
31 | 32 | 3.907894 | AAATTAGCCTCGAAAAACGCA | 57.092 | 38.095 | 0.00 | 0.00 | 42.26 | 5.24 |
32 | 33 | 4.434713 | AAATTAGCCTCGAAAAACGCAT | 57.565 | 36.364 | 0.00 | 0.00 | 42.26 | 4.73 |
33 | 34 | 4.434713 | AATTAGCCTCGAAAAACGCATT | 57.565 | 36.364 | 0.00 | 0.00 | 42.26 | 3.56 |
34 | 35 | 5.554822 | AATTAGCCTCGAAAAACGCATTA | 57.445 | 34.783 | 0.00 | 0.00 | 42.26 | 1.90 |
35 | 36 | 4.593597 | TTAGCCTCGAAAAACGCATTAG | 57.406 | 40.909 | 0.00 | 0.00 | 42.26 | 1.73 |
36 | 37 | 2.695359 | AGCCTCGAAAAACGCATTAGA | 58.305 | 42.857 | 0.00 | 0.00 | 42.26 | 2.10 |
37 | 38 | 2.415512 | AGCCTCGAAAAACGCATTAGAC | 59.584 | 45.455 | 0.00 | 0.00 | 42.26 | 2.59 |
38 | 39 | 2.475685 | GCCTCGAAAAACGCATTAGACC | 60.476 | 50.000 | 0.00 | 0.00 | 42.26 | 3.85 |
39 | 40 | 2.095372 | CCTCGAAAAACGCATTAGACCC | 59.905 | 50.000 | 0.00 | 0.00 | 42.26 | 4.46 |
40 | 41 | 3.000727 | CTCGAAAAACGCATTAGACCCT | 58.999 | 45.455 | 0.00 | 0.00 | 42.26 | 4.34 |
41 | 42 | 4.178540 | CTCGAAAAACGCATTAGACCCTA | 58.821 | 43.478 | 0.00 | 0.00 | 42.26 | 3.53 |
42 | 43 | 4.761975 | TCGAAAAACGCATTAGACCCTAT | 58.238 | 39.130 | 0.00 | 0.00 | 42.26 | 2.57 |
43 | 44 | 5.904941 | TCGAAAAACGCATTAGACCCTATA | 58.095 | 37.500 | 0.00 | 0.00 | 42.26 | 1.31 |
44 | 45 | 6.518493 | TCGAAAAACGCATTAGACCCTATAT | 58.482 | 36.000 | 0.00 | 0.00 | 42.26 | 0.86 |
45 | 46 | 7.660112 | TCGAAAAACGCATTAGACCCTATATA | 58.340 | 34.615 | 0.00 | 0.00 | 42.26 | 0.86 |
46 | 47 | 7.811236 | TCGAAAAACGCATTAGACCCTATATAG | 59.189 | 37.037 | 2.46 | 2.46 | 42.26 | 1.31 |
47 | 48 | 7.811236 | CGAAAAACGCATTAGACCCTATATAGA | 59.189 | 37.037 | 11.53 | 0.00 | 34.51 | 1.98 |
48 | 49 | 9.654663 | GAAAAACGCATTAGACCCTATATAGAT | 57.345 | 33.333 | 11.53 | 0.00 | 0.00 | 1.98 |
49 | 50 | 9.436957 | AAAAACGCATTAGACCCTATATAGATG | 57.563 | 33.333 | 11.53 | 6.87 | 0.00 | 2.90 |
50 | 51 | 6.716934 | ACGCATTAGACCCTATATAGATGG | 57.283 | 41.667 | 11.53 | 7.34 | 0.00 | 3.51 |
51 | 52 | 6.432581 | ACGCATTAGACCCTATATAGATGGA | 58.567 | 40.000 | 11.53 | 0.00 | 0.00 | 3.41 |
52 | 53 | 6.895756 | ACGCATTAGACCCTATATAGATGGAA | 59.104 | 38.462 | 11.53 | 0.00 | 0.00 | 3.53 |
53 | 54 | 7.068839 | ACGCATTAGACCCTATATAGATGGAAG | 59.931 | 40.741 | 11.53 | 0.00 | 0.00 | 3.46 |
54 | 55 | 7.470702 | CGCATTAGACCCTATATAGATGGAAGG | 60.471 | 44.444 | 11.53 | 5.26 | 0.00 | 3.46 |
55 | 56 | 7.565398 | GCATTAGACCCTATATAGATGGAAGGA | 59.435 | 40.741 | 11.53 | 0.00 | 0.00 | 3.36 |
56 | 57 | 9.142014 | CATTAGACCCTATATAGATGGAAGGAG | 57.858 | 40.741 | 11.53 | 0.00 | 0.00 | 3.69 |
57 | 58 | 6.098716 | AGACCCTATATAGATGGAAGGAGG | 57.901 | 45.833 | 11.53 | 3.20 | 0.00 | 4.30 |
58 | 59 | 5.042979 | AGACCCTATATAGATGGAAGGAGGG | 60.043 | 48.000 | 11.53 | 4.91 | 46.66 | 4.30 |
59 | 60 | 4.870361 | ACCCTATATAGATGGAAGGAGGGA | 59.130 | 45.833 | 11.53 | 0.00 | 44.48 | 4.20 |
60 | 61 | 5.042979 | ACCCTATATAGATGGAAGGAGGGAG | 60.043 | 48.000 | 11.53 | 0.00 | 44.48 | 4.30 |
61 | 62 | 5.042979 | CCCTATATAGATGGAAGGAGGGAGT | 60.043 | 48.000 | 11.53 | 0.00 | 44.48 | 3.85 |
62 | 63 | 6.162420 | CCCTATATAGATGGAAGGAGGGAGTA | 59.838 | 46.154 | 11.53 | 0.00 | 44.48 | 2.59 |
63 | 64 | 7.313276 | CCCTATATAGATGGAAGGAGGGAGTAA | 60.313 | 44.444 | 11.53 | 0.00 | 44.48 | 2.24 |
64 | 65 | 7.782644 | CCTATATAGATGGAAGGAGGGAGTAAG | 59.217 | 44.444 | 11.53 | 0.00 | 0.00 | 2.34 |
65 | 66 | 2.403561 | AGATGGAAGGAGGGAGTAAGC | 58.596 | 52.381 | 0.00 | 0.00 | 0.00 | 3.09 |
66 | 67 | 1.069358 | GATGGAAGGAGGGAGTAAGCG | 59.931 | 57.143 | 0.00 | 0.00 | 0.00 | 4.68 |
67 | 68 | 0.040646 | TGGAAGGAGGGAGTAAGCGA | 59.959 | 55.000 | 0.00 | 0.00 | 0.00 | 4.93 |
68 | 69 | 0.460722 | GGAAGGAGGGAGTAAGCGAC | 59.539 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
69 | 70 | 1.476477 | GAAGGAGGGAGTAAGCGACT | 58.524 | 55.000 | 0.00 | 0.00 | 42.90 | 4.18 |
70 | 71 | 1.826096 | GAAGGAGGGAGTAAGCGACTT | 59.174 | 52.381 | 0.00 | 0.00 | 39.06 | 3.01 |
71 | 72 | 2.822707 | AGGAGGGAGTAAGCGACTTA | 57.177 | 50.000 | 0.00 | 0.00 | 39.06 | 2.24 |
72 | 73 | 2.377073 | AGGAGGGAGTAAGCGACTTAC | 58.623 | 52.381 | 16.90 | 16.90 | 44.52 | 2.34 |
73 | 74 | 1.408340 | GGAGGGAGTAAGCGACTTACC | 59.592 | 57.143 | 19.43 | 13.51 | 45.08 | 2.85 |
74 | 75 | 2.377073 | GAGGGAGTAAGCGACTTACCT | 58.623 | 52.381 | 19.43 | 14.52 | 45.08 | 3.08 |
75 | 76 | 2.358582 | GAGGGAGTAAGCGACTTACCTC | 59.641 | 54.545 | 20.27 | 20.27 | 46.55 | 3.85 |
76 | 77 | 2.025131 | AGGGAGTAAGCGACTTACCTCT | 60.025 | 50.000 | 19.43 | 15.03 | 45.08 | 3.69 |
77 | 78 | 2.358582 | GGGAGTAAGCGACTTACCTCTC | 59.641 | 54.545 | 19.43 | 14.39 | 45.08 | 3.20 |
78 | 79 | 3.015327 | GGAGTAAGCGACTTACCTCTCA | 58.985 | 50.000 | 19.43 | 0.00 | 45.08 | 3.27 |
79 | 80 | 3.442977 | GGAGTAAGCGACTTACCTCTCAA | 59.557 | 47.826 | 19.43 | 0.00 | 45.08 | 3.02 |
80 | 81 | 4.413969 | GAGTAAGCGACTTACCTCTCAAC | 58.586 | 47.826 | 19.43 | 2.91 | 45.08 | 3.18 |
81 | 82 | 2.349297 | AAGCGACTTACCTCTCAACG | 57.651 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
82 | 83 | 0.109226 | AGCGACTTACCTCTCAACGC | 60.109 | 55.000 | 0.00 | 0.00 | 43.84 | 4.84 |
83 | 84 | 0.388134 | GCGACTTACCTCTCAACGCA | 60.388 | 55.000 | 0.00 | 0.00 | 43.18 | 5.24 |
84 | 85 | 1.933500 | GCGACTTACCTCTCAACGCAA | 60.934 | 52.381 | 0.00 | 0.00 | 43.18 | 4.85 |
85 | 86 | 3.795272 | GCGACTTACCTCTCAACGCAAG | 61.795 | 54.545 | 0.00 | 0.00 | 43.18 | 4.01 |
86 | 87 | 2.338500 | GACTTACCTCTCAACGCAAGG | 58.662 | 52.381 | 0.00 | 0.00 | 46.39 | 3.61 |
87 | 88 | 1.079503 | CTTACCTCTCAACGCAAGGC | 58.920 | 55.000 | 0.00 | 0.00 | 46.39 | 4.35 |
104 | 105 | 4.865761 | CGCTAACAGCCGGCGCTA | 62.866 | 66.667 | 23.20 | 12.71 | 46.25 | 4.26 |
105 | 106 | 2.510691 | GCTAACAGCCGGCGCTAA | 60.511 | 61.111 | 23.20 | 7.65 | 46.25 | 3.09 |
106 | 107 | 1.887707 | GCTAACAGCCGGCGCTAAT | 60.888 | 57.895 | 23.20 | 9.64 | 46.25 | 1.73 |
107 | 108 | 1.436983 | GCTAACAGCCGGCGCTAATT | 61.437 | 55.000 | 23.20 | 14.24 | 46.25 | 1.40 |
108 | 109 | 0.304705 | CTAACAGCCGGCGCTAATTG | 59.695 | 55.000 | 23.20 | 15.52 | 46.25 | 2.32 |
109 | 110 | 0.108089 | TAACAGCCGGCGCTAATTGA | 60.108 | 50.000 | 23.20 | 0.00 | 46.25 | 2.57 |
110 | 111 | 1.369091 | AACAGCCGGCGCTAATTGAG | 61.369 | 55.000 | 23.20 | 6.10 | 46.25 | 3.02 |
111 | 112 | 2.897350 | AGCCGGCGCTAATTGAGC | 60.897 | 61.111 | 23.20 | 0.00 | 46.08 | 4.26 |
125 | 126 | 5.681543 | GCTAATTGAGCGGTAATTAAACAGC | 59.318 | 40.000 | 0.00 | 0.00 | 42.62 | 4.40 |
126 | 127 | 3.733024 | TTGAGCGGTAATTAAACAGCG | 57.267 | 42.857 | 6.84 | 6.84 | 44.06 | 5.18 |
131 | 132 | 2.108700 | CGGTAATTAAACAGCGCATGC | 58.891 | 47.619 | 11.47 | 7.91 | 43.24 | 4.06 |
142 | 143 | 3.630148 | CGCATGCGCCTCTTACGG | 61.630 | 66.667 | 29.09 | 0.00 | 33.11 | 4.02 |
143 | 144 | 3.272334 | GCATGCGCCTCTTACGGG | 61.272 | 66.667 | 4.18 | 0.00 | 0.00 | 5.28 |
144 | 145 | 2.499205 | CATGCGCCTCTTACGGGA | 59.501 | 61.111 | 4.18 | 0.00 | 0.00 | 5.14 |
145 | 146 | 1.592669 | CATGCGCCTCTTACGGGAG | 60.593 | 63.158 | 4.18 | 0.00 | 0.00 | 4.30 |
146 | 147 | 1.756950 | ATGCGCCTCTTACGGGAGA | 60.757 | 57.895 | 4.18 | 0.00 | 35.52 | 3.71 |
147 | 148 | 1.739338 | ATGCGCCTCTTACGGGAGAG | 61.739 | 60.000 | 4.18 | 9.60 | 42.26 | 3.20 |
148 | 149 | 2.119655 | GCGCCTCTTACGGGAGAGA | 61.120 | 63.158 | 16.20 | 0.07 | 44.78 | 3.10 |
149 | 150 | 1.664321 | GCGCCTCTTACGGGAGAGAA | 61.664 | 60.000 | 16.20 | 0.00 | 44.78 | 2.87 |
150 | 151 | 0.815734 | CGCCTCTTACGGGAGAGAAA | 59.184 | 55.000 | 16.20 | 0.00 | 44.78 | 2.52 |
151 | 152 | 1.203994 | CGCCTCTTACGGGAGAGAAAA | 59.796 | 52.381 | 16.20 | 0.00 | 44.78 | 2.29 |
152 | 153 | 2.735762 | CGCCTCTTACGGGAGAGAAAAG | 60.736 | 54.545 | 16.20 | 3.80 | 44.78 | 2.27 |
153 | 154 | 2.418884 | GCCTCTTACGGGAGAGAAAAGG | 60.419 | 54.545 | 16.20 | 4.21 | 44.78 | 3.11 |
154 | 155 | 3.097614 | CCTCTTACGGGAGAGAAAAGGA | 58.902 | 50.000 | 16.20 | 0.00 | 44.78 | 3.36 |
155 | 156 | 3.119065 | CCTCTTACGGGAGAGAAAAGGAC | 60.119 | 52.174 | 16.20 | 0.00 | 44.78 | 3.85 |
156 | 157 | 3.764972 | CTCTTACGGGAGAGAAAAGGACT | 59.235 | 47.826 | 10.76 | 0.00 | 44.78 | 3.85 |
157 | 158 | 4.927049 | TCTTACGGGAGAGAAAAGGACTA | 58.073 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
158 | 159 | 4.948621 | TCTTACGGGAGAGAAAAGGACTAG | 59.051 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
159 | 160 | 1.826096 | ACGGGAGAGAAAAGGACTAGC | 59.174 | 52.381 | 0.00 | 0.00 | 0.00 | 3.42 |
160 | 161 | 1.202313 | CGGGAGAGAAAAGGACTAGCG | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 4.26 |
161 | 162 | 1.826096 | GGGAGAGAAAAGGACTAGCGT | 59.174 | 52.381 | 0.00 | 0.00 | 0.00 | 5.07 |
162 | 163 | 2.159212 | GGGAGAGAAAAGGACTAGCGTC | 60.159 | 54.545 | 0.00 | 0.00 | 39.49 | 5.19 |
163 | 164 | 2.756207 | GGAGAGAAAAGGACTAGCGTCT | 59.244 | 50.000 | 0.00 | 0.00 | 40.10 | 4.18 |
164 | 165 | 3.428316 | GGAGAGAAAAGGACTAGCGTCTG | 60.428 | 52.174 | 0.00 | 0.00 | 40.10 | 3.51 |
165 | 166 | 3.422796 | AGAGAAAAGGACTAGCGTCTGA | 58.577 | 45.455 | 0.00 | 0.00 | 40.10 | 3.27 |
166 | 167 | 4.020543 | AGAGAAAAGGACTAGCGTCTGAT | 58.979 | 43.478 | 0.00 | 0.00 | 40.10 | 2.90 |
167 | 168 | 4.109050 | GAGAAAAGGACTAGCGTCTGATG | 58.891 | 47.826 | 0.00 | 0.00 | 40.10 | 3.07 |
168 | 169 | 2.301577 | AAAGGACTAGCGTCTGATGC | 57.698 | 50.000 | 13.90 | 13.90 | 40.10 | 3.91 |
169 | 170 | 0.461961 | AAGGACTAGCGTCTGATGCC | 59.538 | 55.000 | 17.76 | 2.99 | 40.10 | 4.40 |
170 | 171 | 0.396417 | AGGACTAGCGTCTGATGCCT | 60.396 | 55.000 | 17.76 | 5.12 | 40.10 | 4.75 |
171 | 172 | 0.249238 | GGACTAGCGTCTGATGCCTG | 60.249 | 60.000 | 17.76 | 12.98 | 40.10 | 4.85 |
172 | 173 | 0.873743 | GACTAGCGTCTGATGCCTGC | 60.874 | 60.000 | 17.76 | 2.50 | 37.19 | 4.85 |
173 | 174 | 1.593750 | CTAGCGTCTGATGCCTGCC | 60.594 | 63.158 | 17.76 | 0.00 | 0.00 | 4.85 |
174 | 175 | 2.025767 | CTAGCGTCTGATGCCTGCCT | 62.026 | 60.000 | 17.76 | 2.21 | 0.00 | 4.75 |
175 | 176 | 1.617018 | TAGCGTCTGATGCCTGCCTT | 61.617 | 55.000 | 17.76 | 1.49 | 0.00 | 4.35 |
176 | 177 | 2.042831 | GCGTCTGATGCCTGCCTTT | 61.043 | 57.895 | 10.77 | 0.00 | 0.00 | 3.11 |
177 | 178 | 1.798735 | CGTCTGATGCCTGCCTTTG | 59.201 | 57.895 | 0.00 | 0.00 | 0.00 | 2.77 |
178 | 179 | 1.509923 | GTCTGATGCCTGCCTTTGC | 59.490 | 57.895 | 0.00 | 0.00 | 38.26 | 3.68 |
179 | 180 | 2.042259 | TCTGATGCCTGCCTTTGCG | 61.042 | 57.895 | 0.00 | 0.00 | 41.78 | 4.85 |
180 | 181 | 3.695022 | CTGATGCCTGCCTTTGCGC | 62.695 | 63.158 | 0.00 | 0.00 | 41.78 | 6.09 |
181 | 182 | 4.503314 | GATGCCTGCCTTTGCGCC | 62.503 | 66.667 | 4.18 | 0.00 | 41.78 | 6.53 |
185 | 186 | 4.183686 | CCTGCCTTTGCGCCGATG | 62.184 | 66.667 | 4.18 | 0.00 | 41.78 | 3.84 |
186 | 187 | 3.434319 | CTGCCTTTGCGCCGATGT | 61.434 | 61.111 | 4.18 | 0.00 | 41.78 | 3.06 |
187 | 188 | 2.046796 | TGCCTTTGCGCCGATGTA | 60.047 | 55.556 | 4.18 | 0.00 | 41.78 | 2.29 |
188 | 189 | 2.040213 | CTGCCTTTGCGCCGATGTAG | 62.040 | 60.000 | 4.18 | 0.00 | 41.78 | 2.74 |
189 | 190 | 2.709475 | CCTTTGCGCCGATGTAGC | 59.291 | 61.111 | 4.18 | 0.00 | 0.00 | 3.58 |
196 | 197 | 2.654404 | GCCGATGTAGCGTCCGAC | 60.654 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
197 | 198 | 2.352001 | CCGATGTAGCGTCCGACG | 60.352 | 66.667 | 16.72 | 16.72 | 45.88 | 5.12 |
210 | 211 | 2.890474 | CGACGCCGGGATTTCTGG | 60.890 | 66.667 | 2.18 | 0.00 | 44.90 | 3.86 |
211 | 212 | 2.513897 | GACGCCGGGATTTCTGGG | 60.514 | 66.667 | 2.18 | 0.00 | 42.30 | 4.45 |
212 | 213 | 4.796495 | ACGCCGGGATTTCTGGGC | 62.796 | 66.667 | 2.18 | 0.00 | 42.30 | 5.36 |
214 | 215 | 4.129148 | GCCGGGATTTCTGGGCCT | 62.129 | 66.667 | 4.53 | 0.00 | 42.30 | 5.19 |
215 | 216 | 2.752807 | GCCGGGATTTCTGGGCCTA | 61.753 | 63.158 | 4.53 | 0.00 | 42.30 | 3.93 |
216 | 217 | 1.919771 | CCGGGATTTCTGGGCCTAA | 59.080 | 57.895 | 4.53 | 0.00 | 38.27 | 2.69 |
217 | 218 | 0.465642 | CCGGGATTTCTGGGCCTAAC | 60.466 | 60.000 | 4.53 | 0.00 | 38.27 | 2.34 |
218 | 219 | 0.546598 | CGGGATTTCTGGGCCTAACT | 59.453 | 55.000 | 4.53 | 0.00 | 0.00 | 2.24 |
219 | 220 | 1.747206 | CGGGATTTCTGGGCCTAACTG | 60.747 | 57.143 | 4.53 | 0.00 | 0.00 | 3.16 |
220 | 221 | 1.393603 | GGATTTCTGGGCCTAACTGC | 58.606 | 55.000 | 4.53 | 0.00 | 0.00 | 4.40 |
230 | 231 | 1.383523 | GCCTAACTGCCAAGCTAAGG | 58.616 | 55.000 | 0.79 | 0.79 | 0.00 | 2.69 |
231 | 232 | 2.019156 | GCCTAACTGCCAAGCTAAGGG | 61.019 | 57.143 | 7.20 | 1.25 | 0.00 | 3.95 |
232 | 233 | 1.559682 | CCTAACTGCCAAGCTAAGGGA | 59.440 | 52.381 | 7.20 | 3.44 | 0.00 | 4.20 |
233 | 234 | 2.026262 | CCTAACTGCCAAGCTAAGGGAA | 60.026 | 50.000 | 7.20 | 0.00 | 0.00 | 3.97 |
234 | 235 | 2.675658 | AACTGCCAAGCTAAGGGAAA | 57.324 | 45.000 | 7.20 | 0.00 | 0.00 | 3.13 |
235 | 236 | 2.675658 | ACTGCCAAGCTAAGGGAAAA | 57.324 | 45.000 | 7.20 | 0.00 | 0.00 | 2.29 |
236 | 237 | 3.175438 | ACTGCCAAGCTAAGGGAAAAT | 57.825 | 42.857 | 7.20 | 0.00 | 0.00 | 1.82 |
237 | 238 | 3.510459 | ACTGCCAAGCTAAGGGAAAATT | 58.490 | 40.909 | 7.20 | 0.00 | 0.00 | 1.82 |
238 | 239 | 4.672899 | ACTGCCAAGCTAAGGGAAAATTA | 58.327 | 39.130 | 7.20 | 0.00 | 0.00 | 1.40 |
239 | 240 | 4.706962 | ACTGCCAAGCTAAGGGAAAATTAG | 59.293 | 41.667 | 7.20 | 0.00 | 34.09 | 1.73 |
240 | 241 | 4.672899 | TGCCAAGCTAAGGGAAAATTAGT | 58.327 | 39.130 | 7.20 | 0.00 | 33.60 | 2.24 |
241 | 242 | 5.822204 | TGCCAAGCTAAGGGAAAATTAGTA | 58.178 | 37.500 | 7.20 | 0.00 | 33.60 | 1.82 |
242 | 243 | 5.885912 | TGCCAAGCTAAGGGAAAATTAGTAG | 59.114 | 40.000 | 7.20 | 0.00 | 33.60 | 2.57 |
243 | 244 | 5.299531 | GCCAAGCTAAGGGAAAATTAGTAGG | 59.700 | 44.000 | 7.20 | 0.00 | 33.60 | 3.18 |
244 | 245 | 6.659824 | CCAAGCTAAGGGAAAATTAGTAGGA | 58.340 | 40.000 | 0.00 | 0.00 | 33.60 | 2.94 |
245 | 246 | 7.116736 | CCAAGCTAAGGGAAAATTAGTAGGAA | 58.883 | 38.462 | 0.00 | 0.00 | 33.60 | 3.36 |
246 | 247 | 7.614192 | CCAAGCTAAGGGAAAATTAGTAGGAAA | 59.386 | 37.037 | 0.00 | 0.00 | 33.60 | 3.13 |
247 | 248 | 9.190317 | CAAGCTAAGGGAAAATTAGTAGGAAAT | 57.810 | 33.333 | 0.00 | 0.00 | 33.60 | 2.17 |
248 | 249 | 9.769677 | AAGCTAAGGGAAAATTAGTAGGAAATT | 57.230 | 29.630 | 0.00 | 0.00 | 33.60 | 1.82 |
249 | 250 | 9.190317 | AGCTAAGGGAAAATTAGTAGGAAATTG | 57.810 | 33.333 | 0.00 | 0.00 | 33.60 | 2.32 |
250 | 251 | 9.185680 | GCTAAGGGAAAATTAGTAGGAAATTGA | 57.814 | 33.333 | 0.00 | 0.00 | 33.60 | 2.57 |
253 | 254 | 8.768501 | AGGGAAAATTAGTAGGAAATTGATCC | 57.231 | 34.615 | 0.00 | 0.00 | 39.96 | 3.36 |
263 | 264 | 3.282885 | GGAAATTGATCCTGTCACCTCC | 58.717 | 50.000 | 0.00 | 0.00 | 36.32 | 4.30 |
264 | 265 | 3.282885 | GAAATTGATCCTGTCACCTCCC | 58.717 | 50.000 | 0.00 | 0.00 | 36.32 | 4.30 |
265 | 266 | 2.277008 | ATTGATCCTGTCACCTCCCT | 57.723 | 50.000 | 0.00 | 0.00 | 36.32 | 4.20 |
266 | 267 | 2.940514 | TTGATCCTGTCACCTCCCTA | 57.059 | 50.000 | 0.00 | 0.00 | 36.32 | 3.53 |
267 | 268 | 2.940514 | TGATCCTGTCACCTCCCTAA | 57.059 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
268 | 269 | 2.752030 | TGATCCTGTCACCTCCCTAAG | 58.248 | 52.381 | 0.00 | 0.00 | 0.00 | 2.18 |
269 | 270 | 1.414550 | GATCCTGTCACCTCCCTAAGC | 59.585 | 57.143 | 0.00 | 0.00 | 0.00 | 3.09 |
270 | 271 | 0.413832 | TCCTGTCACCTCCCTAAGCT | 59.586 | 55.000 | 0.00 | 0.00 | 0.00 | 3.74 |
271 | 272 | 1.203313 | TCCTGTCACCTCCCTAAGCTT | 60.203 | 52.381 | 3.48 | 3.48 | 0.00 | 3.74 |
272 | 273 | 1.208293 | CCTGTCACCTCCCTAAGCTTC | 59.792 | 57.143 | 0.00 | 0.00 | 0.00 | 3.86 |
273 | 274 | 1.208293 | CTGTCACCTCCCTAAGCTTCC | 59.792 | 57.143 | 0.00 | 0.00 | 0.00 | 3.46 |
274 | 275 | 0.175989 | GTCACCTCCCTAAGCTTCCG | 59.824 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
275 | 276 | 0.976073 | TCACCTCCCTAAGCTTCCGG | 60.976 | 60.000 | 0.00 | 4.83 | 0.00 | 5.14 |
276 | 277 | 2.368011 | ACCTCCCTAAGCTTCCGGC | 61.368 | 63.158 | 0.00 | 0.00 | 42.19 | 6.13 |
285 | 286 | 4.515404 | GCTTCCGGCGTTGTAGAT | 57.485 | 55.556 | 6.01 | 0.00 | 0.00 | 1.98 |
286 | 287 | 2.006772 | GCTTCCGGCGTTGTAGATG | 58.993 | 57.895 | 6.01 | 0.00 | 0.00 | 2.90 |
287 | 288 | 2.006772 | CTTCCGGCGTTGTAGATGC | 58.993 | 57.895 | 6.01 | 0.00 | 39.65 | 3.91 |
296 | 297 | 2.802816 | GCGTTGTAGATGCCCTTATGAG | 59.197 | 50.000 | 0.00 | 0.00 | 34.03 | 2.90 |
330 | 331 | 0.253044 | CATCATCGGACCAACCCACT | 59.747 | 55.000 | 0.00 | 0.00 | 34.64 | 4.00 |
332 | 333 | 1.646912 | TCATCGGACCAACCCACTTA | 58.353 | 50.000 | 0.00 | 0.00 | 34.64 | 2.24 |
353 | 354 | 3.074369 | TCGGCTGCATCCCTCGAA | 61.074 | 61.111 | 0.00 | 0.00 | 0.00 | 3.71 |
356 | 357 | 2.268920 | GCTGCATCCCTCGAACCA | 59.731 | 61.111 | 0.00 | 0.00 | 0.00 | 3.67 |
359 | 360 | 2.124695 | GCATCCCTCGAACCACCC | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
369 | 370 | 1.375523 | GAACCACCCATTCGAGCGT | 60.376 | 57.895 | 0.00 | 0.00 | 0.00 | 5.07 |
370 | 371 | 0.953960 | GAACCACCCATTCGAGCGTT | 60.954 | 55.000 | 0.00 | 0.00 | 0.00 | 4.84 |
371 | 372 | 0.536460 | AACCACCCATTCGAGCGTTT | 60.536 | 50.000 | 0.00 | 0.00 | 0.00 | 3.60 |
372 | 373 | 1.234615 | ACCACCCATTCGAGCGTTTG | 61.235 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
376 | 377 | 1.512734 | CCATTCGAGCGTTTGCAGC | 60.513 | 57.895 | 0.00 | 0.00 | 46.23 | 5.25 |
384 | 1881 | 2.598632 | GCGTTTGCAGCGAGACAGT | 61.599 | 57.895 | 15.36 | 0.00 | 42.15 | 3.55 |
385 | 1882 | 1.488957 | CGTTTGCAGCGAGACAGTC | 59.511 | 57.895 | 6.89 | 0.00 | 0.00 | 3.51 |
386 | 1883 | 1.862806 | GTTTGCAGCGAGACAGTCC | 59.137 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
397 | 1894 | 3.734463 | CGAGACAGTCCTAGAGATGCTA | 58.266 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
398 | 1895 | 3.496884 | CGAGACAGTCCTAGAGATGCTAC | 59.503 | 52.174 | 0.00 | 0.00 | 0.00 | 3.58 |
408 | 1905 | 8.053963 | AGTCCTAGAGATGCTACAAAGTTAGTA | 58.946 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
409 | 1906 | 8.852135 | GTCCTAGAGATGCTACAAAGTTAGTAT | 58.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
418 | 1915 | 6.260050 | TGCTACAAAGTTAGTATTATGCAGGC | 59.740 | 38.462 | 0.00 | 0.00 | 0.00 | 4.85 |
423 | 1920 | 6.927294 | AAGTTAGTATTATGCAGGCTGAAC | 57.073 | 37.500 | 20.86 | 10.12 | 0.00 | 3.18 |
425 | 1922 | 6.414732 | AGTTAGTATTATGCAGGCTGAACAA | 58.585 | 36.000 | 20.86 | 2.71 | 0.00 | 2.83 |
447 | 1944 | 3.145286 | TGAATGCAGACAATCAAACGGA | 58.855 | 40.909 | 0.00 | 0.00 | 32.73 | 4.69 |
450 | 1947 | 3.394674 | TGCAGACAATCAAACGGACTA | 57.605 | 42.857 | 0.00 | 0.00 | 0.00 | 2.59 |
452 | 1949 | 4.130857 | TGCAGACAATCAAACGGACTAAA | 58.869 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
453 | 1950 | 4.759693 | TGCAGACAATCAAACGGACTAAAT | 59.240 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
454 | 1951 | 5.240623 | TGCAGACAATCAAACGGACTAAATT | 59.759 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
455 | 1952 | 5.569059 | GCAGACAATCAAACGGACTAAATTG | 59.431 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
456 | 1953 | 6.668323 | CAGACAATCAAACGGACTAAATTGT | 58.332 | 36.000 | 0.00 | 0.00 | 39.36 | 2.71 |
457 | 1954 | 7.138736 | CAGACAATCAAACGGACTAAATTGTT | 58.861 | 34.615 | 0.00 | 0.00 | 37.44 | 2.83 |
459 | 1956 | 5.689961 | ACAATCAAACGGACTAAATTGTTGC | 59.310 | 36.000 | 0.00 | 0.00 | 34.60 | 4.17 |
460 | 1957 | 4.231718 | TCAAACGGACTAAATTGTTGCC | 57.768 | 40.909 | 0.00 | 0.00 | 0.00 | 4.52 |
461 | 1958 | 2.977169 | CAAACGGACTAAATTGTTGCCG | 59.023 | 45.455 | 0.00 | 0.00 | 43.95 | 5.69 |
462 | 1959 | 0.519961 | ACGGACTAAATTGTTGCCGC | 59.480 | 50.000 | 0.00 | 0.00 | 42.25 | 6.53 |
463 | 1960 | 0.519519 | CGGACTAAATTGTTGCCGCA | 59.480 | 50.000 | 0.00 | 0.00 | 31.80 | 5.69 |
464 | 1961 | 1.727857 | CGGACTAAATTGTTGCCGCAC | 60.728 | 52.381 | 0.00 | 0.00 | 31.80 | 5.34 |
466 | 1963 | 2.584791 | GACTAAATTGTTGCCGCACAG | 58.415 | 47.619 | 0.00 | 0.00 | 0.00 | 3.66 |
467 | 1964 | 1.269448 | ACTAAATTGTTGCCGCACAGG | 59.731 | 47.619 | 0.00 | 0.00 | 44.97 | 4.00 |
469 | 1966 | 0.031994 | AAATTGTTGCCGCACAGGAC | 59.968 | 50.000 | 0.00 | 0.00 | 45.00 | 3.85 |
470 | 1967 | 1.106351 | AATTGTTGCCGCACAGGACA | 61.106 | 50.000 | 0.00 | 0.00 | 45.00 | 4.02 |
471 | 1968 | 1.518056 | ATTGTTGCCGCACAGGACAG | 61.518 | 55.000 | 0.00 | 0.00 | 45.00 | 3.51 |
472 | 1969 | 2.280797 | GTTGCCGCACAGGACAGA | 60.281 | 61.111 | 0.00 | 0.00 | 45.00 | 3.41 |
473 | 1970 | 1.672356 | GTTGCCGCACAGGACAGAT | 60.672 | 57.895 | 0.00 | 0.00 | 45.00 | 2.90 |
474 | 1971 | 1.073025 | TTGCCGCACAGGACAGATT | 59.927 | 52.632 | 0.00 | 0.00 | 45.00 | 2.40 |
479 | 1976 | 1.066858 | CCGCACAGGACAGATTAGTGT | 60.067 | 52.381 | 0.00 | 0.00 | 45.00 | 3.55 |
494 | 1991 | 0.178068 | AGTGTATGCGGGCTACCAAG | 59.822 | 55.000 | 0.00 | 0.00 | 36.13 | 3.61 |
525 | 2022 | 0.438830 | CTAACCTGTGCGCGACTTTC | 59.561 | 55.000 | 12.10 | 0.00 | 0.00 | 2.62 |
538 | 2036 | 1.627550 | GACTTTCTTCGCCAGACCGC | 61.628 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
561 | 3625 | 3.614150 | CGCACTCAGCTCACCTTAAACTA | 60.614 | 47.826 | 0.00 | 0.00 | 42.61 | 2.24 |
639 | 3707 | 2.094545 | TGACCACACGACTCATGAGATG | 60.095 | 50.000 | 29.27 | 22.84 | 0.00 | 2.90 |
668 | 3736 | 2.450609 | TAAGAGGAGGACAAACACGC | 57.549 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
831 | 3964 | 1.856265 | CTTTTCCGCGCCTCAGCTTT | 61.856 | 55.000 | 0.00 | 0.00 | 36.60 | 3.51 |
845 | 3988 | 0.886563 | AGCTTTGCATGCCAAGTCTC | 59.113 | 50.000 | 26.87 | 14.21 | 34.34 | 3.36 |
926 | 4614 | 1.296715 | CCTCAACTCAACCCTCCCG | 59.703 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
1020 | 4801 | 2.111878 | GCGTCCATGATGGGAGGG | 59.888 | 66.667 | 12.26 | 0.00 | 41.88 | 4.30 |
1136 | 4926 | 1.130054 | AGCAGCAAGGACAAGGAGGA | 61.130 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1321 | 5145 | 1.710339 | GCCGCAGCTTTCTTCTACG | 59.290 | 57.895 | 0.00 | 0.00 | 35.50 | 3.51 |
1322 | 5146 | 1.014564 | GCCGCAGCTTTCTTCTACGT | 61.015 | 55.000 | 0.00 | 0.00 | 35.50 | 3.57 |
1323 | 5147 | 1.734707 | GCCGCAGCTTTCTTCTACGTA | 60.735 | 52.381 | 0.00 | 0.00 | 35.50 | 3.57 |
1329 | 5153 | 4.439016 | GCAGCTTTCTTCTACGTAGCTAGT | 60.439 | 45.833 | 18.00 | 0.00 | 40.01 | 2.57 |
1355 | 5188 | 1.367195 | GTGCGTGCGTGTGTGTAAC | 60.367 | 57.895 | 0.00 | 0.00 | 37.35 | 2.50 |
1363 | 5196 | 2.096174 | TGCGTGTGTGTAACTTTGTTCC | 59.904 | 45.455 | 0.00 | 0.00 | 38.04 | 3.62 |
1365 | 5198 | 3.181504 | GCGTGTGTGTAACTTTGTTCCTT | 60.182 | 43.478 | 0.00 | 0.00 | 38.04 | 3.36 |
1366 | 5199 | 4.673320 | GCGTGTGTGTAACTTTGTTCCTTT | 60.673 | 41.667 | 0.00 | 0.00 | 38.04 | 3.11 |
1367 | 5200 | 4.791163 | CGTGTGTGTAACTTTGTTCCTTTG | 59.209 | 41.667 | 0.00 | 0.00 | 38.04 | 2.77 |
1368 | 5201 | 5.391097 | CGTGTGTGTAACTTTGTTCCTTTGA | 60.391 | 40.000 | 0.00 | 0.00 | 38.04 | 2.69 |
1374 | 5207 | 7.012894 | TGTGTAACTTTGTTCCTTTGATCGATT | 59.987 | 33.333 | 0.00 | 0.00 | 38.04 | 3.34 |
1449 | 5289 | 5.380043 | ACAAGTTGACAGGAATTCAGTCAT | 58.620 | 37.500 | 24.60 | 13.81 | 41.42 | 3.06 |
1501 | 5404 | 3.124636 | CCGTTTTTACTTGTCTGCGCTAT | 59.875 | 43.478 | 9.73 | 0.00 | 0.00 | 2.97 |
1502 | 5405 | 4.081761 | CGTTTTTACTTGTCTGCGCTATG | 58.918 | 43.478 | 9.73 | 0.00 | 0.00 | 2.23 |
1503 | 5406 | 4.143200 | CGTTTTTACTTGTCTGCGCTATGA | 60.143 | 41.667 | 9.73 | 1.04 | 0.00 | 2.15 |
1504 | 5407 | 4.921470 | TTTTACTTGTCTGCGCTATGAC | 57.079 | 40.909 | 9.73 | 14.69 | 0.00 | 3.06 |
1505 | 5408 | 2.579207 | TACTTGTCTGCGCTATGACC | 57.421 | 50.000 | 19.89 | 8.06 | 32.67 | 4.02 |
1506 | 5409 | 0.898320 | ACTTGTCTGCGCTATGACCT | 59.102 | 50.000 | 19.89 | 5.92 | 32.67 | 3.85 |
1507 | 5410 | 2.100197 | ACTTGTCTGCGCTATGACCTA | 58.900 | 47.619 | 19.89 | 11.02 | 32.67 | 3.08 |
1529 | 5436 | 6.870965 | CCTATGAGATGTTTGGCTATCAGTAC | 59.129 | 42.308 | 0.00 | 0.00 | 0.00 | 2.73 |
1530 | 5437 | 5.675684 | TGAGATGTTTGGCTATCAGTACA | 57.324 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
1531 | 5438 | 5.664457 | TGAGATGTTTGGCTATCAGTACAG | 58.336 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
1668 | 6742 | 7.491048 | GGAGATCAAGTTGATTCTCTGTTAGAC | 59.509 | 40.741 | 26.70 | 15.12 | 37.20 | 2.59 |
1674 | 6748 | 6.926313 | AGTTGATTCTCTGTTAGACCACTAC | 58.074 | 40.000 | 0.00 | 0.00 | 32.51 | 2.73 |
1680 | 6754 | 5.506708 | TCTCTGTTAGACCACTACTGCATA | 58.493 | 41.667 | 0.00 | 0.00 | 0.00 | 3.14 |
1693 | 7247 | 1.421646 | ACTGCATAAGGGGCTGATACC | 59.578 | 52.381 | 0.00 | 0.00 | 34.70 | 2.73 |
1705 | 7259 | 1.875576 | GCTGATACCATGCCTTCTCGG | 60.876 | 57.143 | 0.00 | 0.00 | 0.00 | 4.63 |
1715 | 7269 | 1.416401 | TGCCTTCTCGGTCTCTTGTTT | 59.584 | 47.619 | 0.00 | 0.00 | 34.25 | 2.83 |
1718 | 7272 | 3.728845 | CCTTCTCGGTCTCTTGTTTCAA | 58.271 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
1779 | 7418 | 5.576447 | TGTCTCCCACAAAAGAAAAAGTC | 57.424 | 39.130 | 0.00 | 0.00 | 29.30 | 3.01 |
1839 | 7513 | 7.598869 | GCATGCATTGAGTGATATTTGATCATT | 59.401 | 33.333 | 14.21 | 0.00 | 0.00 | 2.57 |
1862 | 7616 | 3.561725 | CCCCGCAAGAGAAGTGATATTTC | 59.438 | 47.826 | 0.00 | 0.00 | 43.02 | 2.17 |
1906 | 7749 | 9.722184 | ATGAATATTAGTAGCTACAGTAGACGA | 57.278 | 33.333 | 25.28 | 4.54 | 0.00 | 4.20 |
1958 | 7805 | 5.462530 | TCTCGTGTCCTTGTCAGAAATTA | 57.537 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
1985 | 7832 | 5.105756 | ACATCAGCTAAAAAGTATGGTTGCC | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2065 | 8649 | 1.480789 | TGCTAATCAGACCTGCCGTA | 58.519 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2067 | 8651 | 2.035961 | TGCTAATCAGACCTGCCGTATC | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2072 | 8656 | 2.304092 | TCAGACCTGCCGTATCGTAAT | 58.696 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
2157 | 8742 | 5.176590 | GCTAGAATCACAGGTCGATGAATTC | 59.823 | 44.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2174 | 8759 | 0.318699 | TTCGACAGCTCAAGGTCACG | 60.319 | 55.000 | 3.18 | 0.00 | 33.66 | 4.35 |
2205 | 8791 | 2.205074 | GGTTCTAGTGCATCCACATCG | 58.795 | 52.381 | 0.00 | 0.00 | 44.53 | 3.84 |
2210 | 8796 | 4.854924 | TGCATCCACATCGCCGGG | 62.855 | 66.667 | 2.18 | 0.00 | 0.00 | 5.73 |
2253 | 8839 | 8.892723 | TGATATGCTTCCAAGTTAAACATACTG | 58.107 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
2255 | 8841 | 5.381757 | TGCTTCCAAGTTAAACATACTGGT | 58.618 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
2257 | 8843 | 6.016610 | TGCTTCCAAGTTAAACATACTGGTTC | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 3.62 |
2258 | 8844 | 6.569801 | GCTTCCAAGTTAAACATACTGGTTCC | 60.570 | 42.308 | 0.00 | 0.00 | 0.00 | 3.62 |
2259 | 8845 | 6.195600 | TCCAAGTTAAACATACTGGTTCCT | 57.804 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
2260 | 8846 | 7.319052 | TCCAAGTTAAACATACTGGTTCCTA | 57.681 | 36.000 | 0.00 | 0.00 | 0.00 | 2.94 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 7.639113 | TTCGAGGCTAATTTTGACCAAATAT | 57.361 | 32.000 | 0.00 | 0.00 | 33.60 | 1.28 |
1 | 2 | 7.455641 | TTTCGAGGCTAATTTTGACCAAATA | 57.544 | 32.000 | 0.00 | 0.00 | 33.60 | 1.40 |
2 | 3 | 5.975693 | TTCGAGGCTAATTTTGACCAAAT | 57.024 | 34.783 | 0.00 | 0.00 | 36.57 | 2.32 |
3 | 4 | 5.776173 | TTTCGAGGCTAATTTTGACCAAA | 57.224 | 34.783 | 0.00 | 0.00 | 0.00 | 3.28 |
4 | 5 | 5.776173 | TTTTCGAGGCTAATTTTGACCAA | 57.224 | 34.783 | 0.00 | 0.00 | 0.00 | 3.67 |
5 | 6 | 5.525199 | GTTTTTCGAGGCTAATTTTGACCA | 58.475 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
6 | 7 | 4.615541 | CGTTTTTCGAGGCTAATTTTGACC | 59.384 | 41.667 | 0.00 | 0.00 | 42.86 | 4.02 |
7 | 8 | 4.088071 | GCGTTTTTCGAGGCTAATTTTGAC | 59.912 | 41.667 | 0.00 | 0.00 | 42.86 | 3.18 |
8 | 9 | 4.223659 | GCGTTTTTCGAGGCTAATTTTGA | 58.776 | 39.130 | 0.00 | 0.00 | 42.86 | 2.69 |
9 | 10 | 3.978217 | TGCGTTTTTCGAGGCTAATTTTG | 59.022 | 39.130 | 0.00 | 0.00 | 42.86 | 2.44 |
10 | 11 | 4.231718 | TGCGTTTTTCGAGGCTAATTTT | 57.768 | 36.364 | 0.00 | 0.00 | 42.86 | 1.82 |
11 | 12 | 3.907894 | TGCGTTTTTCGAGGCTAATTT | 57.092 | 38.095 | 0.00 | 0.00 | 42.86 | 1.82 |
12 | 13 | 4.434713 | AATGCGTTTTTCGAGGCTAATT | 57.565 | 36.364 | 0.00 | 0.00 | 42.86 | 1.40 |
13 | 14 | 4.873827 | TCTAATGCGTTTTTCGAGGCTAAT | 59.126 | 37.500 | 0.00 | 0.00 | 42.86 | 1.73 |
14 | 15 | 4.092383 | GTCTAATGCGTTTTTCGAGGCTAA | 59.908 | 41.667 | 0.00 | 0.00 | 42.86 | 3.09 |
15 | 16 | 3.615496 | GTCTAATGCGTTTTTCGAGGCTA | 59.385 | 43.478 | 0.00 | 0.00 | 42.86 | 3.93 |
16 | 17 | 2.415512 | GTCTAATGCGTTTTTCGAGGCT | 59.584 | 45.455 | 0.00 | 0.00 | 42.86 | 4.58 |
17 | 18 | 2.475685 | GGTCTAATGCGTTTTTCGAGGC | 60.476 | 50.000 | 0.00 | 0.00 | 42.86 | 4.70 |
18 | 19 | 2.095372 | GGGTCTAATGCGTTTTTCGAGG | 59.905 | 50.000 | 0.00 | 0.00 | 42.86 | 4.63 |
19 | 20 | 3.000727 | AGGGTCTAATGCGTTTTTCGAG | 58.999 | 45.455 | 0.00 | 0.00 | 42.86 | 4.04 |
20 | 21 | 3.048337 | AGGGTCTAATGCGTTTTTCGA | 57.952 | 42.857 | 0.00 | 0.00 | 42.86 | 3.71 |
21 | 22 | 6.780706 | ATATAGGGTCTAATGCGTTTTTCG | 57.219 | 37.500 | 0.00 | 0.00 | 43.12 | 3.46 |
22 | 23 | 9.654663 | ATCTATATAGGGTCTAATGCGTTTTTC | 57.345 | 33.333 | 9.89 | 0.00 | 0.00 | 2.29 |
23 | 24 | 9.436957 | CATCTATATAGGGTCTAATGCGTTTTT | 57.563 | 33.333 | 9.89 | 0.00 | 0.00 | 1.94 |
24 | 25 | 8.041323 | CCATCTATATAGGGTCTAATGCGTTTT | 58.959 | 37.037 | 9.89 | 0.00 | 0.00 | 2.43 |
25 | 26 | 7.399191 | TCCATCTATATAGGGTCTAATGCGTTT | 59.601 | 37.037 | 9.89 | 0.00 | 0.00 | 3.60 |
26 | 27 | 6.895756 | TCCATCTATATAGGGTCTAATGCGTT | 59.104 | 38.462 | 9.89 | 0.00 | 0.00 | 4.84 |
27 | 28 | 6.432581 | TCCATCTATATAGGGTCTAATGCGT | 58.567 | 40.000 | 9.89 | 0.00 | 0.00 | 5.24 |
28 | 29 | 6.961360 | TCCATCTATATAGGGTCTAATGCG | 57.039 | 41.667 | 9.89 | 1.15 | 0.00 | 4.73 |
29 | 30 | 7.565398 | TCCTTCCATCTATATAGGGTCTAATGC | 59.435 | 40.741 | 9.89 | 0.00 | 0.00 | 3.56 |
30 | 31 | 9.142014 | CTCCTTCCATCTATATAGGGTCTAATG | 57.858 | 40.741 | 9.89 | 5.15 | 0.00 | 1.90 |
31 | 32 | 8.293216 | CCTCCTTCCATCTATATAGGGTCTAAT | 58.707 | 40.741 | 9.89 | 0.00 | 0.00 | 1.73 |
32 | 33 | 7.313276 | CCCTCCTTCCATCTATATAGGGTCTAA | 60.313 | 44.444 | 9.89 | 0.00 | 38.09 | 2.10 |
33 | 34 | 6.162420 | CCCTCCTTCCATCTATATAGGGTCTA | 59.838 | 46.154 | 9.89 | 0.00 | 38.09 | 2.59 |
34 | 35 | 5.042979 | CCCTCCTTCCATCTATATAGGGTCT | 60.043 | 48.000 | 9.89 | 0.00 | 38.09 | 3.85 |
35 | 36 | 5.043281 | TCCCTCCTTCCATCTATATAGGGTC | 60.043 | 48.000 | 9.89 | 0.00 | 42.58 | 4.46 |
36 | 37 | 4.870361 | TCCCTCCTTCCATCTATATAGGGT | 59.130 | 45.833 | 9.89 | 0.00 | 42.58 | 4.34 |
37 | 38 | 5.042979 | ACTCCCTCCTTCCATCTATATAGGG | 60.043 | 48.000 | 9.89 | 4.49 | 43.23 | 3.53 |
38 | 39 | 6.098716 | ACTCCCTCCTTCCATCTATATAGG | 57.901 | 45.833 | 9.89 | 0.00 | 0.00 | 2.57 |
39 | 40 | 7.286775 | GCTTACTCCCTCCTTCCATCTATATAG | 59.713 | 44.444 | 3.10 | 3.10 | 0.00 | 1.31 |
40 | 41 | 7.126733 | GCTTACTCCCTCCTTCCATCTATATA | 58.873 | 42.308 | 0.00 | 0.00 | 0.00 | 0.86 |
41 | 42 | 5.961421 | GCTTACTCCCTCCTTCCATCTATAT | 59.039 | 44.000 | 0.00 | 0.00 | 0.00 | 0.86 |
42 | 43 | 5.334421 | GCTTACTCCCTCCTTCCATCTATA | 58.666 | 45.833 | 0.00 | 0.00 | 0.00 | 1.31 |
43 | 44 | 4.164204 | GCTTACTCCCTCCTTCCATCTAT | 58.836 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
44 | 45 | 3.577919 | GCTTACTCCCTCCTTCCATCTA | 58.422 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
45 | 46 | 2.403561 | GCTTACTCCCTCCTTCCATCT | 58.596 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
46 | 47 | 1.069358 | CGCTTACTCCCTCCTTCCATC | 59.931 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
47 | 48 | 1.123928 | CGCTTACTCCCTCCTTCCAT | 58.876 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
48 | 49 | 0.040646 | TCGCTTACTCCCTCCTTCCA | 59.959 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
49 | 50 | 0.460722 | GTCGCTTACTCCCTCCTTCC | 59.539 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
50 | 51 | 1.476477 | AGTCGCTTACTCCCTCCTTC | 58.524 | 55.000 | 0.00 | 0.00 | 30.33 | 3.46 |
51 | 52 | 1.939980 | AAGTCGCTTACTCCCTCCTT | 58.060 | 50.000 | 0.00 | 0.00 | 37.50 | 3.36 |
52 | 53 | 2.377073 | GTAAGTCGCTTACTCCCTCCT | 58.623 | 52.381 | 17.18 | 0.00 | 41.93 | 3.69 |
53 | 54 | 1.408340 | GGTAAGTCGCTTACTCCCTCC | 59.592 | 57.143 | 21.09 | 7.42 | 43.89 | 4.30 |
54 | 55 | 2.358582 | GAGGTAAGTCGCTTACTCCCTC | 59.641 | 54.545 | 21.09 | 17.18 | 43.89 | 4.30 |
55 | 56 | 2.025131 | AGAGGTAAGTCGCTTACTCCCT | 60.025 | 50.000 | 21.09 | 14.13 | 43.89 | 4.20 |
56 | 57 | 2.358582 | GAGAGGTAAGTCGCTTACTCCC | 59.641 | 54.545 | 21.09 | 13.83 | 43.89 | 4.30 |
57 | 58 | 3.015327 | TGAGAGGTAAGTCGCTTACTCC | 58.985 | 50.000 | 21.09 | 15.43 | 43.89 | 3.85 |
58 | 59 | 4.413969 | GTTGAGAGGTAAGTCGCTTACTC | 58.586 | 47.826 | 21.09 | 17.22 | 43.89 | 2.59 |
59 | 60 | 3.119919 | CGTTGAGAGGTAAGTCGCTTACT | 60.120 | 47.826 | 21.09 | 12.17 | 43.89 | 2.24 |
60 | 61 | 3.169733 | CGTTGAGAGGTAAGTCGCTTAC | 58.830 | 50.000 | 16.55 | 16.55 | 43.75 | 2.34 |
61 | 62 | 2.415090 | GCGTTGAGAGGTAAGTCGCTTA | 60.415 | 50.000 | 0.00 | 0.00 | 39.26 | 3.09 |
62 | 63 | 1.669211 | GCGTTGAGAGGTAAGTCGCTT | 60.669 | 52.381 | 0.00 | 0.00 | 39.26 | 4.68 |
63 | 64 | 0.109226 | GCGTTGAGAGGTAAGTCGCT | 60.109 | 55.000 | 0.00 | 0.00 | 39.26 | 4.93 |
64 | 65 | 0.388134 | TGCGTTGAGAGGTAAGTCGC | 60.388 | 55.000 | 0.00 | 0.00 | 41.98 | 5.19 |
65 | 66 | 1.986378 | CTTGCGTTGAGAGGTAAGTCG | 59.014 | 52.381 | 0.00 | 0.00 | 31.45 | 4.18 |
66 | 67 | 2.338500 | CCTTGCGTTGAGAGGTAAGTC | 58.662 | 52.381 | 0.00 | 0.00 | 33.34 | 3.01 |
67 | 68 | 1.608283 | GCCTTGCGTTGAGAGGTAAGT | 60.608 | 52.381 | 0.00 | 0.00 | 33.34 | 2.24 |
68 | 69 | 1.079503 | GCCTTGCGTTGAGAGGTAAG | 58.920 | 55.000 | 0.00 | 0.00 | 34.47 | 2.34 |
69 | 70 | 3.226884 | GCCTTGCGTTGAGAGGTAA | 57.773 | 52.632 | 0.00 | 0.00 | 33.03 | 2.85 |
81 | 82 | 4.166011 | CGGCTGTTAGCGCCTTGC | 62.166 | 66.667 | 2.29 | 1.37 | 45.37 | 4.01 |
82 | 83 | 3.499737 | CCGGCTGTTAGCGCCTTG | 61.500 | 66.667 | 2.29 | 0.00 | 45.37 | 3.61 |
102 | 103 | 5.901884 | CGCTGTTTAATTACCGCTCAATTAG | 59.098 | 40.000 | 0.00 | 0.00 | 31.39 | 1.73 |
103 | 104 | 5.728344 | GCGCTGTTTAATTACCGCTCAATTA | 60.728 | 40.000 | 0.00 | 0.00 | 38.52 | 1.40 |
104 | 105 | 4.658071 | CGCTGTTTAATTACCGCTCAATT | 58.342 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
105 | 106 | 3.486875 | GCGCTGTTTAATTACCGCTCAAT | 60.487 | 43.478 | 0.00 | 0.00 | 38.52 | 2.57 |
106 | 107 | 2.159626 | GCGCTGTTTAATTACCGCTCAA | 60.160 | 45.455 | 0.00 | 0.00 | 38.52 | 3.02 |
107 | 108 | 1.395608 | GCGCTGTTTAATTACCGCTCA | 59.604 | 47.619 | 0.00 | 0.00 | 38.52 | 4.26 |
108 | 109 | 1.395608 | TGCGCTGTTTAATTACCGCTC | 59.604 | 47.619 | 9.73 | 0.00 | 41.71 | 5.03 |
109 | 110 | 1.444836 | TGCGCTGTTTAATTACCGCT | 58.555 | 45.000 | 9.73 | 0.00 | 41.71 | 5.52 |
110 | 111 | 2.108700 | CATGCGCTGTTTAATTACCGC | 58.891 | 47.619 | 9.73 | 0.00 | 41.55 | 5.68 |
111 | 112 | 2.108700 | GCATGCGCTGTTTAATTACCG | 58.891 | 47.619 | 9.73 | 0.00 | 34.30 | 4.02 |
112 | 113 | 2.108700 | CGCATGCGCTGTTTAATTACC | 58.891 | 47.619 | 29.09 | 0.00 | 35.30 | 2.85 |
125 | 126 | 3.630148 | CCGTAAGAGGCGCATGCG | 61.630 | 66.667 | 34.83 | 34.83 | 41.27 | 4.73 |
126 | 127 | 3.272334 | CCCGTAAGAGGCGCATGC | 61.272 | 66.667 | 10.83 | 7.91 | 43.02 | 4.06 |
127 | 128 | 1.592669 | CTCCCGTAAGAGGCGCATG | 60.593 | 63.158 | 10.83 | 0.00 | 43.02 | 4.06 |
128 | 129 | 1.739338 | CTCTCCCGTAAGAGGCGCAT | 61.739 | 60.000 | 10.83 | 0.00 | 39.33 | 4.73 |
129 | 130 | 2.361992 | TCTCCCGTAAGAGGCGCA | 60.362 | 61.111 | 10.83 | 0.00 | 43.02 | 6.09 |
130 | 131 | 1.664321 | TTCTCTCCCGTAAGAGGCGC | 61.664 | 60.000 | 0.00 | 0.00 | 42.58 | 6.53 |
131 | 132 | 0.815734 | TTTCTCTCCCGTAAGAGGCG | 59.184 | 55.000 | 10.42 | 0.00 | 42.58 | 5.52 |
132 | 133 | 2.418884 | CCTTTTCTCTCCCGTAAGAGGC | 60.419 | 54.545 | 10.42 | 0.00 | 42.58 | 4.70 |
133 | 134 | 3.097614 | TCCTTTTCTCTCCCGTAAGAGG | 58.902 | 50.000 | 10.42 | 0.00 | 42.58 | 3.69 |
134 | 135 | 3.764972 | AGTCCTTTTCTCTCCCGTAAGAG | 59.235 | 47.826 | 5.21 | 5.21 | 43.50 | 2.85 |
135 | 136 | 3.775910 | AGTCCTTTTCTCTCCCGTAAGA | 58.224 | 45.455 | 0.00 | 0.00 | 43.02 | 2.10 |
136 | 137 | 4.440387 | GCTAGTCCTTTTCTCTCCCGTAAG | 60.440 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
137 | 138 | 3.446516 | GCTAGTCCTTTTCTCTCCCGTAA | 59.553 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
138 | 139 | 3.022406 | GCTAGTCCTTTTCTCTCCCGTA | 58.978 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
139 | 140 | 1.826096 | GCTAGTCCTTTTCTCTCCCGT | 59.174 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
140 | 141 | 1.202313 | CGCTAGTCCTTTTCTCTCCCG | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 5.14 |
141 | 142 | 1.826096 | ACGCTAGTCCTTTTCTCTCCC | 59.174 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
142 | 143 | 3.153676 | GACGCTAGTCCTTTTCTCTCC | 57.846 | 52.381 | 0.00 | 0.00 | 41.41 | 3.71 |
154 | 155 | 1.142748 | GCAGGCATCAGACGCTAGT | 59.857 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
155 | 156 | 1.593750 | GGCAGGCATCAGACGCTAG | 60.594 | 63.158 | 0.00 | 0.00 | 0.00 | 3.42 |
156 | 157 | 1.617018 | AAGGCAGGCATCAGACGCTA | 61.617 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
157 | 158 | 2.475371 | AAAGGCAGGCATCAGACGCT | 62.475 | 55.000 | 0.00 | 0.00 | 0.00 | 5.07 |
158 | 159 | 2.042831 | AAAGGCAGGCATCAGACGC | 61.043 | 57.895 | 0.00 | 0.00 | 0.00 | 5.19 |
159 | 160 | 1.798735 | CAAAGGCAGGCATCAGACG | 59.201 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
160 | 161 | 1.509923 | GCAAAGGCAGGCATCAGAC | 59.490 | 57.895 | 0.00 | 0.00 | 40.72 | 3.51 |
161 | 162 | 2.042259 | CGCAAAGGCAGGCATCAGA | 61.042 | 57.895 | 0.00 | 0.00 | 41.24 | 3.27 |
162 | 163 | 2.488355 | CGCAAAGGCAGGCATCAG | 59.512 | 61.111 | 0.00 | 0.00 | 41.24 | 2.90 |
163 | 164 | 3.751246 | GCGCAAAGGCAGGCATCA | 61.751 | 61.111 | 0.30 | 0.00 | 41.24 | 3.07 |
164 | 165 | 4.503314 | GGCGCAAAGGCAGGCATC | 62.503 | 66.667 | 10.83 | 0.00 | 45.92 | 3.91 |
171 | 172 | 2.709475 | CTACATCGGCGCAAAGGC | 59.291 | 61.111 | 10.83 | 0.00 | 42.76 | 4.35 |
172 | 173 | 2.709475 | GCTACATCGGCGCAAAGG | 59.291 | 61.111 | 10.83 | 0.00 | 0.00 | 3.11 |
173 | 174 | 2.321060 | CGCTACATCGGCGCAAAG | 59.679 | 61.111 | 10.83 | 0.00 | 45.83 | 2.77 |
179 | 180 | 2.654404 | GTCGGACGCTACATCGGC | 60.654 | 66.667 | 0.00 | 0.00 | 36.59 | 5.54 |
180 | 181 | 2.352001 | CGTCGGACGCTACATCGG | 60.352 | 66.667 | 18.36 | 0.00 | 33.65 | 4.18 |
193 | 194 | 2.890474 | CCAGAAATCCCGGCGTCG | 60.890 | 66.667 | 0.29 | 0.29 | 0.00 | 5.12 |
194 | 195 | 2.513897 | CCCAGAAATCCCGGCGTC | 60.514 | 66.667 | 6.01 | 0.00 | 0.00 | 5.19 |
195 | 196 | 4.796495 | GCCCAGAAATCCCGGCGT | 62.796 | 66.667 | 6.01 | 0.00 | 0.00 | 5.68 |
197 | 198 | 2.279037 | TTAGGCCCAGAAATCCCGGC | 62.279 | 60.000 | 0.00 | 0.00 | 40.85 | 6.13 |
198 | 199 | 0.465642 | GTTAGGCCCAGAAATCCCGG | 60.466 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
199 | 200 | 0.546598 | AGTTAGGCCCAGAAATCCCG | 59.453 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
200 | 201 | 2.024306 | GCAGTTAGGCCCAGAAATCCC | 61.024 | 57.143 | 0.00 | 0.00 | 0.00 | 3.85 |
201 | 202 | 1.393603 | GCAGTTAGGCCCAGAAATCC | 58.606 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
211 | 212 | 1.383523 | CCTTAGCTTGGCAGTTAGGC | 58.616 | 55.000 | 0.00 | 0.00 | 44.50 | 3.93 |
212 | 213 | 1.559682 | TCCCTTAGCTTGGCAGTTAGG | 59.440 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
213 | 214 | 3.350219 | TTCCCTTAGCTTGGCAGTTAG | 57.650 | 47.619 | 0.00 | 0.00 | 0.00 | 2.34 |
214 | 215 | 3.799432 | TTTCCCTTAGCTTGGCAGTTA | 57.201 | 42.857 | 0.00 | 0.00 | 0.00 | 2.24 |
215 | 216 | 2.675658 | TTTCCCTTAGCTTGGCAGTT | 57.324 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
216 | 217 | 2.675658 | TTTTCCCTTAGCTTGGCAGT | 57.324 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
217 | 218 | 4.706962 | ACTAATTTTCCCTTAGCTTGGCAG | 59.293 | 41.667 | 0.00 | 0.00 | 30.80 | 4.85 |
218 | 219 | 4.672899 | ACTAATTTTCCCTTAGCTTGGCA | 58.327 | 39.130 | 0.00 | 0.00 | 30.80 | 4.92 |
219 | 220 | 5.299531 | CCTACTAATTTTCCCTTAGCTTGGC | 59.700 | 44.000 | 0.00 | 0.00 | 30.80 | 4.52 |
220 | 221 | 6.659824 | TCCTACTAATTTTCCCTTAGCTTGG | 58.340 | 40.000 | 0.00 | 0.00 | 30.80 | 3.61 |
221 | 222 | 8.575649 | TTTCCTACTAATTTTCCCTTAGCTTG | 57.424 | 34.615 | 0.00 | 0.00 | 30.80 | 4.01 |
222 | 223 | 9.769677 | AATTTCCTACTAATTTTCCCTTAGCTT | 57.230 | 29.630 | 0.00 | 0.00 | 30.80 | 3.74 |
223 | 224 | 9.190317 | CAATTTCCTACTAATTTTCCCTTAGCT | 57.810 | 33.333 | 0.00 | 0.00 | 30.80 | 3.32 |
224 | 225 | 9.185680 | TCAATTTCCTACTAATTTTCCCTTAGC | 57.814 | 33.333 | 0.00 | 0.00 | 30.80 | 3.09 |
227 | 228 | 9.201989 | GGATCAATTTCCTACTAATTTTCCCTT | 57.798 | 33.333 | 0.00 | 0.00 | 32.68 | 3.95 |
228 | 229 | 8.569596 | AGGATCAATTTCCTACTAATTTTCCCT | 58.430 | 33.333 | 0.00 | 0.00 | 44.50 | 4.20 |
229 | 230 | 8.633561 | CAGGATCAATTTCCTACTAATTTTCCC | 58.366 | 37.037 | 0.00 | 0.00 | 44.54 | 3.97 |
230 | 231 | 9.190317 | ACAGGATCAATTTCCTACTAATTTTCC | 57.810 | 33.333 | 0.00 | 0.00 | 44.54 | 3.13 |
232 | 233 | 9.753674 | TGACAGGATCAATTTCCTACTAATTTT | 57.246 | 29.630 | 0.00 | 0.00 | 44.54 | 1.82 |
233 | 234 | 9.178758 | GTGACAGGATCAATTTCCTACTAATTT | 57.821 | 33.333 | 0.00 | 0.00 | 44.54 | 1.82 |
234 | 235 | 7.775561 | GGTGACAGGATCAATTTCCTACTAATT | 59.224 | 37.037 | 0.00 | 0.00 | 44.54 | 1.40 |
235 | 236 | 7.127955 | AGGTGACAGGATCAATTTCCTACTAAT | 59.872 | 37.037 | 0.00 | 0.00 | 44.54 | 1.73 |
236 | 237 | 6.443849 | AGGTGACAGGATCAATTTCCTACTAA | 59.556 | 38.462 | 0.00 | 0.00 | 44.54 | 2.24 |
237 | 238 | 5.964477 | AGGTGACAGGATCAATTTCCTACTA | 59.036 | 40.000 | 0.00 | 0.00 | 44.54 | 1.82 |
238 | 239 | 4.785376 | AGGTGACAGGATCAATTTCCTACT | 59.215 | 41.667 | 0.00 | 0.00 | 44.54 | 2.57 |
239 | 240 | 5.104259 | AGGTGACAGGATCAATTTCCTAC | 57.896 | 43.478 | 0.00 | 0.00 | 44.54 | 3.18 |
240 | 241 | 4.164221 | GGAGGTGACAGGATCAATTTCCTA | 59.836 | 45.833 | 0.00 | 0.00 | 44.54 | 2.94 |
242 | 243 | 3.282885 | GGAGGTGACAGGATCAATTTCC | 58.717 | 50.000 | 0.00 | 0.00 | 39.72 | 3.13 |
243 | 244 | 3.054065 | AGGGAGGTGACAGGATCAATTTC | 60.054 | 47.826 | 0.00 | 0.00 | 39.72 | 2.17 |
244 | 245 | 2.922283 | AGGGAGGTGACAGGATCAATTT | 59.078 | 45.455 | 0.00 | 0.00 | 39.72 | 1.82 |
245 | 246 | 2.566746 | AGGGAGGTGACAGGATCAATT | 58.433 | 47.619 | 0.00 | 0.00 | 39.72 | 2.32 |
246 | 247 | 2.277008 | AGGGAGGTGACAGGATCAAT | 57.723 | 50.000 | 0.00 | 0.00 | 39.72 | 2.57 |
247 | 248 | 2.940514 | TAGGGAGGTGACAGGATCAA | 57.059 | 50.000 | 0.00 | 0.00 | 39.72 | 2.57 |
248 | 249 | 2.752030 | CTTAGGGAGGTGACAGGATCA | 58.248 | 52.381 | 0.00 | 0.00 | 33.79 | 2.92 |
249 | 250 | 1.414550 | GCTTAGGGAGGTGACAGGATC | 59.585 | 57.143 | 0.00 | 0.00 | 0.00 | 3.36 |
250 | 251 | 1.008938 | AGCTTAGGGAGGTGACAGGAT | 59.991 | 52.381 | 0.00 | 0.00 | 34.08 | 3.24 |
251 | 252 | 0.413832 | AGCTTAGGGAGGTGACAGGA | 59.586 | 55.000 | 0.00 | 0.00 | 34.08 | 3.86 |
252 | 253 | 1.208293 | GAAGCTTAGGGAGGTGACAGG | 59.792 | 57.143 | 0.00 | 0.00 | 35.94 | 4.00 |
253 | 254 | 1.208293 | GGAAGCTTAGGGAGGTGACAG | 59.792 | 57.143 | 0.00 | 0.00 | 35.94 | 3.51 |
254 | 255 | 1.276622 | GGAAGCTTAGGGAGGTGACA | 58.723 | 55.000 | 0.00 | 0.00 | 35.94 | 3.58 |
255 | 256 | 0.175989 | CGGAAGCTTAGGGAGGTGAC | 59.824 | 60.000 | 0.00 | 0.00 | 35.94 | 3.67 |
256 | 257 | 0.976073 | CCGGAAGCTTAGGGAGGTGA | 60.976 | 60.000 | 9.18 | 0.00 | 35.94 | 4.02 |
257 | 258 | 1.522569 | CCGGAAGCTTAGGGAGGTG | 59.477 | 63.158 | 9.18 | 0.00 | 35.94 | 4.00 |
258 | 259 | 2.368011 | GCCGGAAGCTTAGGGAGGT | 61.368 | 63.158 | 17.21 | 0.00 | 38.99 | 3.85 |
259 | 260 | 2.506472 | GCCGGAAGCTTAGGGAGG | 59.494 | 66.667 | 17.21 | 9.42 | 38.99 | 4.30 |
260 | 261 | 2.107141 | CGCCGGAAGCTTAGGGAG | 59.893 | 66.667 | 17.21 | 11.13 | 40.39 | 4.30 |
261 | 262 | 2.288025 | AACGCCGGAAGCTTAGGGA | 61.288 | 57.895 | 17.21 | 0.00 | 40.39 | 4.20 |
262 | 263 | 2.106683 | CAACGCCGGAAGCTTAGGG | 61.107 | 63.158 | 18.70 | 14.71 | 40.39 | 3.53 |
263 | 264 | 0.108520 | TACAACGCCGGAAGCTTAGG | 60.109 | 55.000 | 5.05 | 14.33 | 40.39 | 2.69 |
264 | 265 | 1.135199 | TCTACAACGCCGGAAGCTTAG | 60.135 | 52.381 | 5.05 | 0.00 | 40.39 | 2.18 |
265 | 266 | 0.889994 | TCTACAACGCCGGAAGCTTA | 59.110 | 50.000 | 5.05 | 0.00 | 40.39 | 3.09 |
266 | 267 | 0.249398 | ATCTACAACGCCGGAAGCTT | 59.751 | 50.000 | 5.05 | 0.00 | 40.39 | 3.74 |
267 | 268 | 0.460284 | CATCTACAACGCCGGAAGCT | 60.460 | 55.000 | 5.05 | 0.00 | 40.39 | 3.74 |
268 | 269 | 2.006772 | CATCTACAACGCCGGAAGC | 58.993 | 57.895 | 5.05 | 0.00 | 38.52 | 3.86 |
269 | 270 | 1.429148 | GGCATCTACAACGCCGGAAG | 61.429 | 60.000 | 5.05 | 0.00 | 35.79 | 3.46 |
270 | 271 | 1.448893 | GGCATCTACAACGCCGGAA | 60.449 | 57.895 | 5.05 | 0.00 | 35.79 | 4.30 |
271 | 272 | 2.185867 | GGCATCTACAACGCCGGA | 59.814 | 61.111 | 5.05 | 0.00 | 35.79 | 5.14 |
274 | 275 | 1.873591 | CATAAGGGCATCTACAACGCC | 59.126 | 52.381 | 0.00 | 0.00 | 45.47 | 5.68 |
275 | 276 | 2.802816 | CTCATAAGGGCATCTACAACGC | 59.197 | 50.000 | 0.00 | 0.00 | 0.00 | 4.84 |
276 | 277 | 4.051922 | GTCTCATAAGGGCATCTACAACG | 58.948 | 47.826 | 0.00 | 0.00 | 0.00 | 4.10 |
277 | 278 | 5.023533 | TGTCTCATAAGGGCATCTACAAC | 57.976 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
278 | 279 | 5.692115 | TTGTCTCATAAGGGCATCTACAA | 57.308 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
279 | 280 | 5.692115 | TTTGTCTCATAAGGGCATCTACA | 57.308 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
280 | 281 | 5.006746 | CGTTTTGTCTCATAAGGGCATCTAC | 59.993 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
281 | 282 | 5.105106 | TCGTTTTGTCTCATAAGGGCATCTA | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
282 | 283 | 3.941483 | CGTTTTGTCTCATAAGGGCATCT | 59.059 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
283 | 284 | 3.938963 | TCGTTTTGTCTCATAAGGGCATC | 59.061 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
284 | 285 | 3.941483 | CTCGTTTTGTCTCATAAGGGCAT | 59.059 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
285 | 286 | 3.334691 | CTCGTTTTGTCTCATAAGGGCA | 58.665 | 45.455 | 0.00 | 0.00 | 0.00 | 5.36 |
286 | 287 | 2.678336 | CCTCGTTTTGTCTCATAAGGGC | 59.322 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
287 | 288 | 2.678336 | GCCTCGTTTTGTCTCATAAGGG | 59.322 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
288 | 289 | 3.372206 | CAGCCTCGTTTTGTCTCATAAGG | 59.628 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
296 | 297 | 0.874390 | TGATGCAGCCTCGTTTTGTC | 59.126 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
330 | 331 | 2.202878 | GGATGCAGCCGAGCGTAA | 60.203 | 61.111 | 4.62 | 0.00 | 37.31 | 3.18 |
353 | 354 | 1.072505 | AAACGCTCGAATGGGTGGT | 59.927 | 52.632 | 0.00 | 0.00 | 33.36 | 4.16 |
356 | 357 | 1.577328 | CTGCAAACGCTCGAATGGGT | 61.577 | 55.000 | 0.00 | 0.00 | 34.52 | 4.51 |
359 | 360 | 1.860423 | CGCTGCAAACGCTCGAATG | 60.860 | 57.895 | 0.00 | 0.00 | 0.00 | 2.67 |
364 | 365 | 2.220455 | CTGTCTCGCTGCAAACGCTC | 62.220 | 60.000 | 0.00 | 0.00 | 0.00 | 5.03 |
369 | 370 | 0.966179 | TAGGACTGTCTCGCTGCAAA | 59.034 | 50.000 | 7.85 | 0.00 | 0.00 | 3.68 |
370 | 371 | 0.528017 | CTAGGACTGTCTCGCTGCAA | 59.472 | 55.000 | 7.85 | 0.00 | 0.00 | 4.08 |
371 | 372 | 0.322546 | TCTAGGACTGTCTCGCTGCA | 60.323 | 55.000 | 7.85 | 0.00 | 0.00 | 4.41 |
372 | 373 | 0.380378 | CTCTAGGACTGTCTCGCTGC | 59.620 | 60.000 | 7.85 | 0.00 | 0.00 | 5.25 |
376 | 377 | 2.571212 | AGCATCTCTAGGACTGTCTCG | 58.429 | 52.381 | 7.85 | 0.00 | 0.00 | 4.04 |
384 | 1881 | 8.998277 | ATACTAACTTTGTAGCATCTCTAGGA | 57.002 | 34.615 | 0.00 | 0.00 | 0.00 | 2.94 |
397 | 1894 | 6.414732 | TCAGCCTGCATAATACTAACTTTGT | 58.585 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
398 | 1895 | 6.925610 | TCAGCCTGCATAATACTAACTTTG | 57.074 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
408 | 1905 | 5.597806 | CATTCATTGTTCAGCCTGCATAAT | 58.402 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
409 | 1906 | 4.678574 | GCATTCATTGTTCAGCCTGCATAA | 60.679 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
418 | 1915 | 5.705902 | TGATTGTCTGCATTCATTGTTCAG | 58.294 | 37.500 | 0.00 | 0.00 | 32.17 | 3.02 |
423 | 1920 | 4.325204 | CCGTTTGATTGTCTGCATTCATTG | 59.675 | 41.667 | 0.00 | 0.00 | 35.66 | 2.82 |
425 | 1922 | 3.758023 | TCCGTTTGATTGTCTGCATTCAT | 59.242 | 39.130 | 0.00 | 0.00 | 35.66 | 2.57 |
447 | 1944 | 1.269448 | CCTGTGCGGCAACAATTTAGT | 59.731 | 47.619 | 3.23 | 0.00 | 0.00 | 2.24 |
450 | 1947 | 0.031994 | GTCCTGTGCGGCAACAATTT | 59.968 | 50.000 | 3.23 | 0.00 | 0.00 | 1.82 |
452 | 1949 | 1.518056 | CTGTCCTGTGCGGCAACAAT | 61.518 | 55.000 | 3.23 | 0.00 | 0.00 | 2.71 |
453 | 1950 | 2.124529 | TGTCCTGTGCGGCAACAA | 60.125 | 55.556 | 3.23 | 0.00 | 0.00 | 2.83 |
454 | 1951 | 2.395988 | ATCTGTCCTGTGCGGCAACA | 62.396 | 55.000 | 3.23 | 4.48 | 0.00 | 3.33 |
455 | 1952 | 1.237285 | AATCTGTCCTGTGCGGCAAC | 61.237 | 55.000 | 3.23 | 0.00 | 0.00 | 4.17 |
456 | 1953 | 0.323302 | TAATCTGTCCTGTGCGGCAA | 59.677 | 50.000 | 3.23 | 0.00 | 0.00 | 4.52 |
457 | 1954 | 0.108186 | CTAATCTGTCCTGTGCGGCA | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
459 | 1956 | 1.066858 | ACACTAATCTGTCCTGTGCGG | 60.067 | 52.381 | 0.00 | 0.00 | 32.49 | 5.69 |
460 | 1957 | 2.370281 | ACACTAATCTGTCCTGTGCG | 57.630 | 50.000 | 0.00 | 0.00 | 32.49 | 5.34 |
461 | 1958 | 3.557595 | GCATACACTAATCTGTCCTGTGC | 59.442 | 47.826 | 0.00 | 0.00 | 32.49 | 4.57 |
462 | 1959 | 3.798878 | CGCATACACTAATCTGTCCTGTG | 59.201 | 47.826 | 0.00 | 0.00 | 35.09 | 3.66 |
463 | 1960 | 3.181475 | CCGCATACACTAATCTGTCCTGT | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
464 | 1961 | 3.384668 | CCGCATACACTAATCTGTCCTG | 58.615 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
466 | 1963 | 2.755650 | CCCGCATACACTAATCTGTCC | 58.244 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
467 | 1964 | 2.135933 | GCCCGCATACACTAATCTGTC | 58.864 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
469 | 1966 | 2.533266 | AGCCCGCATACACTAATCTG | 57.467 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
470 | 1967 | 2.299297 | GGTAGCCCGCATACACTAATCT | 59.701 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
471 | 1968 | 2.036733 | TGGTAGCCCGCATACACTAATC | 59.963 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
472 | 1969 | 2.043992 | TGGTAGCCCGCATACACTAAT | 58.956 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
473 | 1970 | 1.487300 | TGGTAGCCCGCATACACTAA | 58.513 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
474 | 1971 | 1.411246 | CTTGGTAGCCCGCATACACTA | 59.589 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
499 | 1996 | 2.040544 | CGCACAGGTTAGCCAAGGG | 61.041 | 63.158 | 0.00 | 0.00 | 37.19 | 3.95 |
502 | 1999 | 3.047280 | CGCGCACAGGTTAGCCAA | 61.047 | 61.111 | 8.75 | 0.00 | 37.19 | 4.52 |
511 | 2008 | 1.128611 | CGAAGAAAGTCGCGCACAG | 59.871 | 57.895 | 8.75 | 0.00 | 33.66 | 3.66 |
561 | 3625 | 1.006102 | CTTCCTTCCTGCGACGTGT | 60.006 | 57.895 | 0.00 | 0.00 | 0.00 | 4.49 |
639 | 3707 | 2.101082 | GTCCTCCTCTTATTGACCGTCC | 59.899 | 54.545 | 0.00 | 0.00 | 0.00 | 4.79 |
668 | 3736 | 2.973899 | CGGAGTGGGAGAGTGGTG | 59.026 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
831 | 3964 | 2.362736 | GAAGATGAGACTTGGCATGCA | 58.637 | 47.619 | 21.36 | 2.54 | 0.00 | 3.96 |
926 | 4614 | 2.531522 | AATTGCTTTGGGACTTGTGC | 57.468 | 45.000 | 0.00 | 0.00 | 0.00 | 4.57 |
1020 | 4801 | 1.516423 | GTAGGCCTCCACGAAGTCC | 59.484 | 63.158 | 9.68 | 0.00 | 41.61 | 3.85 |
1147 | 4937 | 0.612744 | GCAGCCTTCTTCTCTCCAGT | 59.387 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1320 | 5144 | 0.924363 | CACGCACGCTACTAGCTACG | 60.924 | 60.000 | 6.50 | 9.01 | 39.60 | 3.51 |
1321 | 5145 | 1.201098 | GCACGCACGCTACTAGCTAC | 61.201 | 60.000 | 6.50 | 0.00 | 39.60 | 3.58 |
1322 | 5146 | 1.063649 | GCACGCACGCTACTAGCTA | 59.936 | 57.895 | 6.50 | 0.00 | 39.60 | 3.32 |
1323 | 5147 | 2.202623 | GCACGCACGCTACTAGCT | 60.203 | 61.111 | 6.50 | 0.00 | 39.60 | 3.32 |
1336 | 5160 | 2.861701 | TTACACACACGCACGCACG | 61.862 | 57.895 | 0.00 | 0.00 | 39.50 | 5.34 |
1337 | 5161 | 1.367195 | GTTACACACACGCACGCAC | 60.367 | 57.895 | 0.00 | 0.00 | 0.00 | 5.34 |
1338 | 5162 | 1.084935 | AAGTTACACACACGCACGCA | 61.085 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
1355 | 5188 | 6.428385 | AGCTAATCGATCAAAGGAACAAAG | 57.572 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
1363 | 5196 | 6.045318 | TCCAAGAGAAGCTAATCGATCAAAG | 58.955 | 40.000 | 0.00 | 0.00 | 0.00 | 2.77 |
1365 | 5198 | 5.452496 | CCTCCAAGAGAAGCTAATCGATCAA | 60.452 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1366 | 5199 | 4.038522 | CCTCCAAGAGAAGCTAATCGATCA | 59.961 | 45.833 | 0.00 | 0.00 | 0.00 | 2.92 |
1367 | 5200 | 4.279671 | TCCTCCAAGAGAAGCTAATCGATC | 59.720 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
1368 | 5201 | 4.219115 | TCCTCCAAGAGAAGCTAATCGAT | 58.781 | 43.478 | 0.00 | 0.00 | 0.00 | 3.59 |
1374 | 5207 | 2.828520 | CACACTCCTCCAAGAGAAGCTA | 59.171 | 50.000 | 0.00 | 0.00 | 37.33 | 3.32 |
1443 | 5283 | 6.628919 | TTAATGCAGGATCATTCATGACTG | 57.371 | 37.500 | 6.72 | 6.72 | 40.03 | 3.51 |
1449 | 5289 | 5.210430 | ACCCAATTAATGCAGGATCATTCA | 58.790 | 37.500 | 0.00 | 0.00 | 37.75 | 2.57 |
1454 | 5294 | 4.202151 | GGTCAACCCAATTAATGCAGGATC | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
1501 | 5404 | 5.366477 | TGATAGCCAAACATCTCATAGGTCA | 59.634 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1502 | 5405 | 5.858381 | TGATAGCCAAACATCTCATAGGTC | 58.142 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
1503 | 5406 | 5.367937 | ACTGATAGCCAAACATCTCATAGGT | 59.632 | 40.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1504 | 5407 | 5.862845 | ACTGATAGCCAAACATCTCATAGG | 58.137 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1505 | 5408 | 7.436933 | TGTACTGATAGCCAAACATCTCATAG | 58.563 | 38.462 | 0.00 | 0.00 | 0.00 | 2.23 |
1506 | 5409 | 7.287696 | TCTGTACTGATAGCCAAACATCTCATA | 59.712 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
1507 | 5410 | 6.098838 | TCTGTACTGATAGCCAAACATCTCAT | 59.901 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
1529 | 5436 | 0.885879 | AACAGCCACATGCATGTCTG | 59.114 | 50.000 | 31.74 | 31.74 | 44.83 | 3.51 |
1530 | 5437 | 1.271379 | CAAACAGCCACATGCATGTCT | 59.729 | 47.619 | 29.23 | 20.79 | 44.83 | 3.41 |
1531 | 5438 | 1.670674 | CCAAACAGCCACATGCATGTC | 60.671 | 52.381 | 29.23 | 18.85 | 44.83 | 3.06 |
1668 | 6742 | 0.839946 | AGCCCCTTATGCAGTAGTGG | 59.160 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1674 | 6748 | 1.421268 | TGGTATCAGCCCCTTATGCAG | 59.579 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
1680 | 6754 | 1.538666 | GGCATGGTATCAGCCCCTT | 59.461 | 57.895 | 5.43 | 0.00 | 42.58 | 3.95 |
1693 | 7247 | 1.066573 | ACAAGAGACCGAGAAGGCATG | 60.067 | 52.381 | 0.00 | 0.00 | 46.52 | 4.06 |
1779 | 7418 | 6.428159 | AGCATGACAAGTTGTTAGAAAGGTAG | 59.572 | 38.462 | 10.45 | 0.00 | 0.00 | 3.18 |
1839 | 7513 | 1.860641 | TATCACTTCTCTTGCGGGGA | 58.139 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
1906 | 7749 | 4.311816 | TCGTCTTCGTTTAAGTTCCTGT | 57.688 | 40.909 | 0.00 | 0.00 | 36.51 | 4.00 |
1958 | 7805 | 5.256474 | ACCATACTTTTTAGCTGATGTGCT | 58.744 | 37.500 | 0.00 | 0.00 | 46.11 | 4.40 |
1985 | 7832 | 7.918536 | ACTTCATGCCTTGCTATTGATATAG | 57.081 | 36.000 | 0.00 | 0.00 | 37.40 | 1.31 |
2028 | 8612 | 3.087031 | AGCAATCTCAACCCTTGATGTG | 58.913 | 45.455 | 0.00 | 0.00 | 39.30 | 3.21 |
2065 | 8649 | 8.443160 | CGATTAGTTGATATGCCAAATTACGAT | 58.557 | 33.333 | 0.00 | 0.00 | 0.00 | 3.73 |
2067 | 8651 | 7.015289 | CCGATTAGTTGATATGCCAAATTACG | 58.985 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
2072 | 8656 | 8.729756 | CAATATCCGATTAGTTGATATGCCAAA | 58.270 | 33.333 | 0.00 | 0.00 | 33.23 | 3.28 |
2157 | 8742 | 0.730834 | CTCGTGACCTTGAGCTGTCG | 60.731 | 60.000 | 0.00 | 0.00 | 34.18 | 4.35 |
2174 | 8759 | 3.181503 | TGCACTAGAACCGTCGTATTCTC | 60.182 | 47.826 | 11.16 | 0.96 | 36.56 | 2.87 |
2205 | 8791 | 1.383456 | TTCATGCTTGCATACCCGGC | 61.383 | 55.000 | 7.84 | 0.00 | 0.00 | 6.13 |
2210 | 8796 | 7.909777 | GCATATCATATTCATGCTTGCATAC | 57.090 | 36.000 | 7.84 | 0.00 | 41.44 | 2.39 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.