Multiple sequence alignment - TraesCS6B01G085700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G085700 chr6B 100.000 2264 0 0 1 2264 62214393 62212130 0.000000e+00 4181.0
1 TraesCS6B01G085700 chr6B 88.054 1038 79 20 481 1495 62179557 62178542 0.000000e+00 1188.0
2 TraesCS6B01G085700 chr6B 87.805 656 38 18 1001 1636 62154925 62154292 0.000000e+00 730.0
3 TraesCS6B01G085700 chr6B 85.542 332 17 15 1001 1320 62146401 62146089 3.630000e-83 318.0
4 TraesCS6B01G085700 chr6B 90.710 183 14 3 2004 2186 62177066 62176887 8.080000e-60 241.0
5 TraesCS6B01G085700 chr6B 85.577 208 16 3 62 255 404457978 404458185 2.950000e-49 206.0
6 TraesCS6B01G085700 chr6B 82.857 210 16 11 740 932 62146744 62146538 1.080000e-38 171.0
7 TraesCS6B01G085700 chr6B 89.051 137 12 3 2119 2253 62153372 62153237 1.390000e-37 167.0
8 TraesCS6B01G085700 chr6B 86.620 142 13 2 1578 1715 62178387 62178248 3.890000e-33 152.0
9 TraesCS6B01G085700 chr6B 92.727 55 4 0 565 619 62155920 62155866 1.860000e-11 80.5
10 TraesCS6B01G085700 chr6D 85.291 1081 100 27 949 1996 28628453 28629507 0.000000e+00 1061.0
11 TraesCS6B01G085700 chr6D 82.288 638 62 25 1001 1633 28634628 28635219 2.600000e-139 505.0
12 TraesCS6B01G085700 chr6D 86.530 438 25 14 546 954 28627972 28628404 3.430000e-123 451.0
13 TraesCS6B01G085700 chr6D 79.638 221 14 14 740 932 28634271 28634488 1.820000e-26 130.0
14 TraesCS6B01G085700 chr6D 89.062 64 7 0 290 353 28626308 28626371 1.860000e-11 80.5
15 TraesCS6B01G085700 chr6A 89.510 715 44 10 1581 2264 34069551 34068837 0.000000e+00 876.0
16 TraesCS6B01G085700 chr6A 85.983 585 33 19 1001 1579 34071259 34070718 4.190000e-162 580.0
17 TraesCS6B01G085700 chr6A 81.176 680 81 27 1000 1674 34039601 34038964 9.330000e-139 503.0
18 TraesCS6B01G085700 chr6A 88.706 425 25 13 554 957 34071777 34071355 4.340000e-137 497.0
19 TraesCS6B01G085700 chr6A 98.413 63 1 0 1 63 528925259 528925321 6.610000e-21 111.0
20 TraesCS6B01G085700 chr6A 82.906 117 7 6 741 845 34039929 34039814 2.390000e-15 93.5
21 TraesCS6B01G085700 chr6A 86.076 79 9 1 291 369 34073599 34073523 1.440000e-12 84.2
22 TraesCS6B01G085700 chr7A 89.700 233 23 1 62 293 161336819 161337051 1.700000e-76 296.0
23 TraesCS6B01G085700 chr7A 95.588 68 3 0 1 68 49811176 49811109 2.380000e-20 110.0
24 TraesCS6B01G085700 chr3B 100.000 63 0 0 1 63 561887664 561887602 1.420000e-22 117.0
25 TraesCS6B01G085700 chr3B 94.366 71 4 0 1 71 817667727 817667797 2.380000e-20 110.0
26 TraesCS6B01G085700 chr7B 97.059 68 2 0 1 68 634289498 634289565 5.110000e-22 115.0
27 TraesCS6B01G085700 chr1A 98.438 64 1 0 1 64 42602099 42602162 1.840000e-21 113.0
28 TraesCS6B01G085700 chr1A 92.500 40 2 1 70 109 5827641 5827603 3.140000e-04 56.5
29 TraesCS6B01G085700 chr5D 98.413 63 1 0 1 63 33841760 33841698 6.610000e-21 111.0
30 TraesCS6B01G085700 chr5B 98.413 63 1 0 1 63 516550109 516550047 6.610000e-21 111.0
31 TraesCS6B01G085700 chr4B 98.413 63 1 0 1 63 30856780 30856718 6.610000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G085700 chr6B 62212130 62214393 2263 True 4181.000000 4181 100.000000 1 2264 1 chr6B.!!$R1 2263
1 TraesCS6B01G085700 chr6B 62176887 62179557 2670 True 527.000000 1188 88.461333 481 2186 3 chr6B.!!$R4 1705
2 TraesCS6B01G085700 chr6B 62153237 62155920 2683 True 325.833333 730 89.861000 565 2253 3 chr6B.!!$R3 1688
3 TraesCS6B01G085700 chr6B 62146089 62146744 655 True 244.500000 318 84.199500 740 1320 2 chr6B.!!$R2 580
4 TraesCS6B01G085700 chr6D 28626308 28629507 3199 False 530.833333 1061 86.961000 290 1996 3 chr6D.!!$F1 1706
5 TraesCS6B01G085700 chr6D 28634271 28635219 948 False 317.500000 505 80.963000 740 1633 2 chr6D.!!$F2 893
6 TraesCS6B01G085700 chr6A 34068837 34073599 4762 True 509.300000 876 87.568750 291 2264 4 chr6A.!!$R2 1973
7 TraesCS6B01G085700 chr6A 34038964 34039929 965 True 298.250000 503 82.041000 741 1674 2 chr6A.!!$R1 933


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 1966 0.031994 AAATTGTTGCCGCACAGGAC 59.968 50.0 0.0 0.0 45.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2157 8742 0.730834 CTCGTGACCTTGAGCTGTCG 60.731 60.0 0.0 0.0 34.18 4.35 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.975693 ATTTGGTCAAAATTAGCCTCGAA 57.024 34.783 0.00 0.00 34.72 3.71
25 26 5.776173 TTTGGTCAAAATTAGCCTCGAAA 57.224 34.783 0.00 0.00 0.00 3.46
26 27 5.776173 TTGGTCAAAATTAGCCTCGAAAA 57.224 34.783 0.00 0.00 0.00 2.29
27 28 5.776173 TGGTCAAAATTAGCCTCGAAAAA 57.224 34.783 0.00 0.00 0.00 1.94
28 29 5.525199 TGGTCAAAATTAGCCTCGAAAAAC 58.475 37.500 0.00 0.00 0.00 2.43
29 30 4.615541 GGTCAAAATTAGCCTCGAAAAACG 59.384 41.667 0.00 0.00 44.09 3.60
30 31 4.088071 GTCAAAATTAGCCTCGAAAAACGC 59.912 41.667 0.00 0.00 42.26 4.84
31 32 3.907894 AAATTAGCCTCGAAAAACGCA 57.092 38.095 0.00 0.00 42.26 5.24
32 33 4.434713 AAATTAGCCTCGAAAAACGCAT 57.565 36.364 0.00 0.00 42.26 4.73
33 34 4.434713 AATTAGCCTCGAAAAACGCATT 57.565 36.364 0.00 0.00 42.26 3.56
34 35 5.554822 AATTAGCCTCGAAAAACGCATTA 57.445 34.783 0.00 0.00 42.26 1.90
35 36 4.593597 TTAGCCTCGAAAAACGCATTAG 57.406 40.909 0.00 0.00 42.26 1.73
36 37 2.695359 AGCCTCGAAAAACGCATTAGA 58.305 42.857 0.00 0.00 42.26 2.10
37 38 2.415512 AGCCTCGAAAAACGCATTAGAC 59.584 45.455 0.00 0.00 42.26 2.59
38 39 2.475685 GCCTCGAAAAACGCATTAGACC 60.476 50.000 0.00 0.00 42.26 3.85
39 40 2.095372 CCTCGAAAAACGCATTAGACCC 59.905 50.000 0.00 0.00 42.26 4.46
40 41 3.000727 CTCGAAAAACGCATTAGACCCT 58.999 45.455 0.00 0.00 42.26 4.34
41 42 4.178540 CTCGAAAAACGCATTAGACCCTA 58.821 43.478 0.00 0.00 42.26 3.53
42 43 4.761975 TCGAAAAACGCATTAGACCCTAT 58.238 39.130 0.00 0.00 42.26 2.57
43 44 5.904941 TCGAAAAACGCATTAGACCCTATA 58.095 37.500 0.00 0.00 42.26 1.31
44 45 6.518493 TCGAAAAACGCATTAGACCCTATAT 58.482 36.000 0.00 0.00 42.26 0.86
45 46 7.660112 TCGAAAAACGCATTAGACCCTATATA 58.340 34.615 0.00 0.00 42.26 0.86
46 47 7.811236 TCGAAAAACGCATTAGACCCTATATAG 59.189 37.037 2.46 2.46 42.26 1.31
47 48 7.811236 CGAAAAACGCATTAGACCCTATATAGA 59.189 37.037 11.53 0.00 34.51 1.98
48 49 9.654663 GAAAAACGCATTAGACCCTATATAGAT 57.345 33.333 11.53 0.00 0.00 1.98
49 50 9.436957 AAAAACGCATTAGACCCTATATAGATG 57.563 33.333 11.53 6.87 0.00 2.90
50 51 6.716934 ACGCATTAGACCCTATATAGATGG 57.283 41.667 11.53 7.34 0.00 3.51
51 52 6.432581 ACGCATTAGACCCTATATAGATGGA 58.567 40.000 11.53 0.00 0.00 3.41
52 53 6.895756 ACGCATTAGACCCTATATAGATGGAA 59.104 38.462 11.53 0.00 0.00 3.53
53 54 7.068839 ACGCATTAGACCCTATATAGATGGAAG 59.931 40.741 11.53 0.00 0.00 3.46
54 55 7.470702 CGCATTAGACCCTATATAGATGGAAGG 60.471 44.444 11.53 5.26 0.00 3.46
55 56 7.565398 GCATTAGACCCTATATAGATGGAAGGA 59.435 40.741 11.53 0.00 0.00 3.36
56 57 9.142014 CATTAGACCCTATATAGATGGAAGGAG 57.858 40.741 11.53 0.00 0.00 3.69
57 58 6.098716 AGACCCTATATAGATGGAAGGAGG 57.901 45.833 11.53 3.20 0.00 4.30
58 59 5.042979 AGACCCTATATAGATGGAAGGAGGG 60.043 48.000 11.53 4.91 46.66 4.30
59 60 4.870361 ACCCTATATAGATGGAAGGAGGGA 59.130 45.833 11.53 0.00 44.48 4.20
60 61 5.042979 ACCCTATATAGATGGAAGGAGGGAG 60.043 48.000 11.53 0.00 44.48 4.30
61 62 5.042979 CCCTATATAGATGGAAGGAGGGAGT 60.043 48.000 11.53 0.00 44.48 3.85
62 63 6.162420 CCCTATATAGATGGAAGGAGGGAGTA 59.838 46.154 11.53 0.00 44.48 2.59
63 64 7.313276 CCCTATATAGATGGAAGGAGGGAGTAA 60.313 44.444 11.53 0.00 44.48 2.24
64 65 7.782644 CCTATATAGATGGAAGGAGGGAGTAAG 59.217 44.444 11.53 0.00 0.00 2.34
65 66 2.403561 AGATGGAAGGAGGGAGTAAGC 58.596 52.381 0.00 0.00 0.00 3.09
66 67 1.069358 GATGGAAGGAGGGAGTAAGCG 59.931 57.143 0.00 0.00 0.00 4.68
67 68 0.040646 TGGAAGGAGGGAGTAAGCGA 59.959 55.000 0.00 0.00 0.00 4.93
68 69 0.460722 GGAAGGAGGGAGTAAGCGAC 59.539 60.000 0.00 0.00 0.00 5.19
69 70 1.476477 GAAGGAGGGAGTAAGCGACT 58.524 55.000 0.00 0.00 42.90 4.18
70 71 1.826096 GAAGGAGGGAGTAAGCGACTT 59.174 52.381 0.00 0.00 39.06 3.01
71 72 2.822707 AGGAGGGAGTAAGCGACTTA 57.177 50.000 0.00 0.00 39.06 2.24
72 73 2.377073 AGGAGGGAGTAAGCGACTTAC 58.623 52.381 16.90 16.90 44.52 2.34
73 74 1.408340 GGAGGGAGTAAGCGACTTACC 59.592 57.143 19.43 13.51 45.08 2.85
74 75 2.377073 GAGGGAGTAAGCGACTTACCT 58.623 52.381 19.43 14.52 45.08 3.08
75 76 2.358582 GAGGGAGTAAGCGACTTACCTC 59.641 54.545 20.27 20.27 46.55 3.85
76 77 2.025131 AGGGAGTAAGCGACTTACCTCT 60.025 50.000 19.43 15.03 45.08 3.69
77 78 2.358582 GGGAGTAAGCGACTTACCTCTC 59.641 54.545 19.43 14.39 45.08 3.20
78 79 3.015327 GGAGTAAGCGACTTACCTCTCA 58.985 50.000 19.43 0.00 45.08 3.27
79 80 3.442977 GGAGTAAGCGACTTACCTCTCAA 59.557 47.826 19.43 0.00 45.08 3.02
80 81 4.413969 GAGTAAGCGACTTACCTCTCAAC 58.586 47.826 19.43 2.91 45.08 3.18
81 82 2.349297 AAGCGACTTACCTCTCAACG 57.651 50.000 0.00 0.00 0.00 4.10
82 83 0.109226 AGCGACTTACCTCTCAACGC 60.109 55.000 0.00 0.00 43.84 4.84
83 84 0.388134 GCGACTTACCTCTCAACGCA 60.388 55.000 0.00 0.00 43.18 5.24
84 85 1.933500 GCGACTTACCTCTCAACGCAA 60.934 52.381 0.00 0.00 43.18 4.85
85 86 3.795272 GCGACTTACCTCTCAACGCAAG 61.795 54.545 0.00 0.00 43.18 4.01
86 87 2.338500 GACTTACCTCTCAACGCAAGG 58.662 52.381 0.00 0.00 46.39 3.61
87 88 1.079503 CTTACCTCTCAACGCAAGGC 58.920 55.000 0.00 0.00 46.39 4.35
104 105 4.865761 CGCTAACAGCCGGCGCTA 62.866 66.667 23.20 12.71 46.25 4.26
105 106 2.510691 GCTAACAGCCGGCGCTAA 60.511 61.111 23.20 7.65 46.25 3.09
106 107 1.887707 GCTAACAGCCGGCGCTAAT 60.888 57.895 23.20 9.64 46.25 1.73
107 108 1.436983 GCTAACAGCCGGCGCTAATT 61.437 55.000 23.20 14.24 46.25 1.40
108 109 0.304705 CTAACAGCCGGCGCTAATTG 59.695 55.000 23.20 15.52 46.25 2.32
109 110 0.108089 TAACAGCCGGCGCTAATTGA 60.108 50.000 23.20 0.00 46.25 2.57
110 111 1.369091 AACAGCCGGCGCTAATTGAG 61.369 55.000 23.20 6.10 46.25 3.02
111 112 2.897350 AGCCGGCGCTAATTGAGC 60.897 61.111 23.20 0.00 46.08 4.26
125 126 5.681543 GCTAATTGAGCGGTAATTAAACAGC 59.318 40.000 0.00 0.00 42.62 4.40
126 127 3.733024 TTGAGCGGTAATTAAACAGCG 57.267 42.857 6.84 6.84 44.06 5.18
131 132 2.108700 CGGTAATTAAACAGCGCATGC 58.891 47.619 11.47 7.91 43.24 4.06
142 143 3.630148 CGCATGCGCCTCTTACGG 61.630 66.667 29.09 0.00 33.11 4.02
143 144 3.272334 GCATGCGCCTCTTACGGG 61.272 66.667 4.18 0.00 0.00 5.28
144 145 2.499205 CATGCGCCTCTTACGGGA 59.501 61.111 4.18 0.00 0.00 5.14
145 146 1.592669 CATGCGCCTCTTACGGGAG 60.593 63.158 4.18 0.00 0.00 4.30
146 147 1.756950 ATGCGCCTCTTACGGGAGA 60.757 57.895 4.18 0.00 35.52 3.71
147 148 1.739338 ATGCGCCTCTTACGGGAGAG 61.739 60.000 4.18 9.60 42.26 3.20
148 149 2.119655 GCGCCTCTTACGGGAGAGA 61.120 63.158 16.20 0.07 44.78 3.10
149 150 1.664321 GCGCCTCTTACGGGAGAGAA 61.664 60.000 16.20 0.00 44.78 2.87
150 151 0.815734 CGCCTCTTACGGGAGAGAAA 59.184 55.000 16.20 0.00 44.78 2.52
151 152 1.203994 CGCCTCTTACGGGAGAGAAAA 59.796 52.381 16.20 0.00 44.78 2.29
152 153 2.735762 CGCCTCTTACGGGAGAGAAAAG 60.736 54.545 16.20 3.80 44.78 2.27
153 154 2.418884 GCCTCTTACGGGAGAGAAAAGG 60.419 54.545 16.20 4.21 44.78 3.11
154 155 3.097614 CCTCTTACGGGAGAGAAAAGGA 58.902 50.000 16.20 0.00 44.78 3.36
155 156 3.119065 CCTCTTACGGGAGAGAAAAGGAC 60.119 52.174 16.20 0.00 44.78 3.85
156 157 3.764972 CTCTTACGGGAGAGAAAAGGACT 59.235 47.826 10.76 0.00 44.78 3.85
157 158 4.927049 TCTTACGGGAGAGAAAAGGACTA 58.073 43.478 0.00 0.00 0.00 2.59
158 159 4.948621 TCTTACGGGAGAGAAAAGGACTAG 59.051 45.833 0.00 0.00 0.00 2.57
159 160 1.826096 ACGGGAGAGAAAAGGACTAGC 59.174 52.381 0.00 0.00 0.00 3.42
160 161 1.202313 CGGGAGAGAAAAGGACTAGCG 60.202 57.143 0.00 0.00 0.00 4.26
161 162 1.826096 GGGAGAGAAAAGGACTAGCGT 59.174 52.381 0.00 0.00 0.00 5.07
162 163 2.159212 GGGAGAGAAAAGGACTAGCGTC 60.159 54.545 0.00 0.00 39.49 5.19
163 164 2.756207 GGAGAGAAAAGGACTAGCGTCT 59.244 50.000 0.00 0.00 40.10 4.18
164 165 3.428316 GGAGAGAAAAGGACTAGCGTCTG 60.428 52.174 0.00 0.00 40.10 3.51
165 166 3.422796 AGAGAAAAGGACTAGCGTCTGA 58.577 45.455 0.00 0.00 40.10 3.27
166 167 4.020543 AGAGAAAAGGACTAGCGTCTGAT 58.979 43.478 0.00 0.00 40.10 2.90
167 168 4.109050 GAGAAAAGGACTAGCGTCTGATG 58.891 47.826 0.00 0.00 40.10 3.07
168 169 2.301577 AAAGGACTAGCGTCTGATGC 57.698 50.000 13.90 13.90 40.10 3.91
169 170 0.461961 AAGGACTAGCGTCTGATGCC 59.538 55.000 17.76 2.99 40.10 4.40
170 171 0.396417 AGGACTAGCGTCTGATGCCT 60.396 55.000 17.76 5.12 40.10 4.75
171 172 0.249238 GGACTAGCGTCTGATGCCTG 60.249 60.000 17.76 12.98 40.10 4.85
172 173 0.873743 GACTAGCGTCTGATGCCTGC 60.874 60.000 17.76 2.50 37.19 4.85
173 174 1.593750 CTAGCGTCTGATGCCTGCC 60.594 63.158 17.76 0.00 0.00 4.85
174 175 2.025767 CTAGCGTCTGATGCCTGCCT 62.026 60.000 17.76 2.21 0.00 4.75
175 176 1.617018 TAGCGTCTGATGCCTGCCTT 61.617 55.000 17.76 1.49 0.00 4.35
176 177 2.042831 GCGTCTGATGCCTGCCTTT 61.043 57.895 10.77 0.00 0.00 3.11
177 178 1.798735 CGTCTGATGCCTGCCTTTG 59.201 57.895 0.00 0.00 0.00 2.77
178 179 1.509923 GTCTGATGCCTGCCTTTGC 59.490 57.895 0.00 0.00 38.26 3.68
179 180 2.042259 TCTGATGCCTGCCTTTGCG 61.042 57.895 0.00 0.00 41.78 4.85
180 181 3.695022 CTGATGCCTGCCTTTGCGC 62.695 63.158 0.00 0.00 41.78 6.09
181 182 4.503314 GATGCCTGCCTTTGCGCC 62.503 66.667 4.18 0.00 41.78 6.53
185 186 4.183686 CCTGCCTTTGCGCCGATG 62.184 66.667 4.18 0.00 41.78 3.84
186 187 3.434319 CTGCCTTTGCGCCGATGT 61.434 61.111 4.18 0.00 41.78 3.06
187 188 2.046796 TGCCTTTGCGCCGATGTA 60.047 55.556 4.18 0.00 41.78 2.29
188 189 2.040213 CTGCCTTTGCGCCGATGTAG 62.040 60.000 4.18 0.00 41.78 2.74
189 190 2.709475 CCTTTGCGCCGATGTAGC 59.291 61.111 4.18 0.00 0.00 3.58
196 197 2.654404 GCCGATGTAGCGTCCGAC 60.654 66.667 0.00 0.00 0.00 4.79
197 198 2.352001 CCGATGTAGCGTCCGACG 60.352 66.667 16.72 16.72 45.88 5.12
210 211 2.890474 CGACGCCGGGATTTCTGG 60.890 66.667 2.18 0.00 44.90 3.86
211 212 2.513897 GACGCCGGGATTTCTGGG 60.514 66.667 2.18 0.00 42.30 4.45
212 213 4.796495 ACGCCGGGATTTCTGGGC 62.796 66.667 2.18 0.00 42.30 5.36
214 215 4.129148 GCCGGGATTTCTGGGCCT 62.129 66.667 4.53 0.00 42.30 5.19
215 216 2.752807 GCCGGGATTTCTGGGCCTA 61.753 63.158 4.53 0.00 42.30 3.93
216 217 1.919771 CCGGGATTTCTGGGCCTAA 59.080 57.895 4.53 0.00 38.27 2.69
217 218 0.465642 CCGGGATTTCTGGGCCTAAC 60.466 60.000 4.53 0.00 38.27 2.34
218 219 0.546598 CGGGATTTCTGGGCCTAACT 59.453 55.000 4.53 0.00 0.00 2.24
219 220 1.747206 CGGGATTTCTGGGCCTAACTG 60.747 57.143 4.53 0.00 0.00 3.16
220 221 1.393603 GGATTTCTGGGCCTAACTGC 58.606 55.000 4.53 0.00 0.00 4.40
230 231 1.383523 GCCTAACTGCCAAGCTAAGG 58.616 55.000 0.79 0.79 0.00 2.69
231 232 2.019156 GCCTAACTGCCAAGCTAAGGG 61.019 57.143 7.20 1.25 0.00 3.95
232 233 1.559682 CCTAACTGCCAAGCTAAGGGA 59.440 52.381 7.20 3.44 0.00 4.20
233 234 2.026262 CCTAACTGCCAAGCTAAGGGAA 60.026 50.000 7.20 0.00 0.00 3.97
234 235 2.675658 AACTGCCAAGCTAAGGGAAA 57.324 45.000 7.20 0.00 0.00 3.13
235 236 2.675658 ACTGCCAAGCTAAGGGAAAA 57.324 45.000 7.20 0.00 0.00 2.29
236 237 3.175438 ACTGCCAAGCTAAGGGAAAAT 57.825 42.857 7.20 0.00 0.00 1.82
237 238 3.510459 ACTGCCAAGCTAAGGGAAAATT 58.490 40.909 7.20 0.00 0.00 1.82
238 239 4.672899 ACTGCCAAGCTAAGGGAAAATTA 58.327 39.130 7.20 0.00 0.00 1.40
239 240 4.706962 ACTGCCAAGCTAAGGGAAAATTAG 59.293 41.667 7.20 0.00 34.09 1.73
240 241 4.672899 TGCCAAGCTAAGGGAAAATTAGT 58.327 39.130 7.20 0.00 33.60 2.24
241 242 5.822204 TGCCAAGCTAAGGGAAAATTAGTA 58.178 37.500 7.20 0.00 33.60 1.82
242 243 5.885912 TGCCAAGCTAAGGGAAAATTAGTAG 59.114 40.000 7.20 0.00 33.60 2.57
243 244 5.299531 GCCAAGCTAAGGGAAAATTAGTAGG 59.700 44.000 7.20 0.00 33.60 3.18
244 245 6.659824 CCAAGCTAAGGGAAAATTAGTAGGA 58.340 40.000 0.00 0.00 33.60 2.94
245 246 7.116736 CCAAGCTAAGGGAAAATTAGTAGGAA 58.883 38.462 0.00 0.00 33.60 3.36
246 247 7.614192 CCAAGCTAAGGGAAAATTAGTAGGAAA 59.386 37.037 0.00 0.00 33.60 3.13
247 248 9.190317 CAAGCTAAGGGAAAATTAGTAGGAAAT 57.810 33.333 0.00 0.00 33.60 2.17
248 249 9.769677 AAGCTAAGGGAAAATTAGTAGGAAATT 57.230 29.630 0.00 0.00 33.60 1.82
249 250 9.190317 AGCTAAGGGAAAATTAGTAGGAAATTG 57.810 33.333 0.00 0.00 33.60 2.32
250 251 9.185680 GCTAAGGGAAAATTAGTAGGAAATTGA 57.814 33.333 0.00 0.00 33.60 2.57
253 254 8.768501 AGGGAAAATTAGTAGGAAATTGATCC 57.231 34.615 0.00 0.00 39.96 3.36
263 264 3.282885 GGAAATTGATCCTGTCACCTCC 58.717 50.000 0.00 0.00 36.32 4.30
264 265 3.282885 GAAATTGATCCTGTCACCTCCC 58.717 50.000 0.00 0.00 36.32 4.30
265 266 2.277008 ATTGATCCTGTCACCTCCCT 57.723 50.000 0.00 0.00 36.32 4.20
266 267 2.940514 TTGATCCTGTCACCTCCCTA 57.059 50.000 0.00 0.00 36.32 3.53
267 268 2.940514 TGATCCTGTCACCTCCCTAA 57.059 50.000 0.00 0.00 0.00 2.69
268 269 2.752030 TGATCCTGTCACCTCCCTAAG 58.248 52.381 0.00 0.00 0.00 2.18
269 270 1.414550 GATCCTGTCACCTCCCTAAGC 59.585 57.143 0.00 0.00 0.00 3.09
270 271 0.413832 TCCTGTCACCTCCCTAAGCT 59.586 55.000 0.00 0.00 0.00 3.74
271 272 1.203313 TCCTGTCACCTCCCTAAGCTT 60.203 52.381 3.48 3.48 0.00 3.74
272 273 1.208293 CCTGTCACCTCCCTAAGCTTC 59.792 57.143 0.00 0.00 0.00 3.86
273 274 1.208293 CTGTCACCTCCCTAAGCTTCC 59.792 57.143 0.00 0.00 0.00 3.46
274 275 0.175989 GTCACCTCCCTAAGCTTCCG 59.824 60.000 0.00 0.00 0.00 4.30
275 276 0.976073 TCACCTCCCTAAGCTTCCGG 60.976 60.000 0.00 4.83 0.00 5.14
276 277 2.368011 ACCTCCCTAAGCTTCCGGC 61.368 63.158 0.00 0.00 42.19 6.13
285 286 4.515404 GCTTCCGGCGTTGTAGAT 57.485 55.556 6.01 0.00 0.00 1.98
286 287 2.006772 GCTTCCGGCGTTGTAGATG 58.993 57.895 6.01 0.00 0.00 2.90
287 288 2.006772 CTTCCGGCGTTGTAGATGC 58.993 57.895 6.01 0.00 39.65 3.91
296 297 2.802816 GCGTTGTAGATGCCCTTATGAG 59.197 50.000 0.00 0.00 34.03 2.90
330 331 0.253044 CATCATCGGACCAACCCACT 59.747 55.000 0.00 0.00 34.64 4.00
332 333 1.646912 TCATCGGACCAACCCACTTA 58.353 50.000 0.00 0.00 34.64 2.24
353 354 3.074369 TCGGCTGCATCCCTCGAA 61.074 61.111 0.00 0.00 0.00 3.71
356 357 2.268920 GCTGCATCCCTCGAACCA 59.731 61.111 0.00 0.00 0.00 3.67
359 360 2.124695 GCATCCCTCGAACCACCC 60.125 66.667 0.00 0.00 0.00 4.61
369 370 1.375523 GAACCACCCATTCGAGCGT 60.376 57.895 0.00 0.00 0.00 5.07
370 371 0.953960 GAACCACCCATTCGAGCGTT 60.954 55.000 0.00 0.00 0.00 4.84
371 372 0.536460 AACCACCCATTCGAGCGTTT 60.536 50.000 0.00 0.00 0.00 3.60
372 373 1.234615 ACCACCCATTCGAGCGTTTG 61.235 55.000 0.00 0.00 0.00 2.93
376 377 1.512734 CCATTCGAGCGTTTGCAGC 60.513 57.895 0.00 0.00 46.23 5.25
384 1881 2.598632 GCGTTTGCAGCGAGACAGT 61.599 57.895 15.36 0.00 42.15 3.55
385 1882 1.488957 CGTTTGCAGCGAGACAGTC 59.511 57.895 6.89 0.00 0.00 3.51
386 1883 1.862806 GTTTGCAGCGAGACAGTCC 59.137 57.895 0.00 0.00 0.00 3.85
397 1894 3.734463 CGAGACAGTCCTAGAGATGCTA 58.266 50.000 0.00 0.00 0.00 3.49
398 1895 3.496884 CGAGACAGTCCTAGAGATGCTAC 59.503 52.174 0.00 0.00 0.00 3.58
408 1905 8.053963 AGTCCTAGAGATGCTACAAAGTTAGTA 58.946 37.037 0.00 0.00 0.00 1.82
409 1906 8.852135 GTCCTAGAGATGCTACAAAGTTAGTAT 58.148 37.037 0.00 0.00 0.00 2.12
418 1915 6.260050 TGCTACAAAGTTAGTATTATGCAGGC 59.740 38.462 0.00 0.00 0.00 4.85
423 1920 6.927294 AAGTTAGTATTATGCAGGCTGAAC 57.073 37.500 20.86 10.12 0.00 3.18
425 1922 6.414732 AGTTAGTATTATGCAGGCTGAACAA 58.585 36.000 20.86 2.71 0.00 2.83
447 1944 3.145286 TGAATGCAGACAATCAAACGGA 58.855 40.909 0.00 0.00 32.73 4.69
450 1947 3.394674 TGCAGACAATCAAACGGACTA 57.605 42.857 0.00 0.00 0.00 2.59
452 1949 4.130857 TGCAGACAATCAAACGGACTAAA 58.869 39.130 0.00 0.00 0.00 1.85
453 1950 4.759693 TGCAGACAATCAAACGGACTAAAT 59.240 37.500 0.00 0.00 0.00 1.40
454 1951 5.240623 TGCAGACAATCAAACGGACTAAATT 59.759 36.000 0.00 0.00 0.00 1.82
455 1952 5.569059 GCAGACAATCAAACGGACTAAATTG 59.431 40.000 0.00 0.00 0.00 2.32
456 1953 6.668323 CAGACAATCAAACGGACTAAATTGT 58.332 36.000 0.00 0.00 39.36 2.71
457 1954 7.138736 CAGACAATCAAACGGACTAAATTGTT 58.861 34.615 0.00 0.00 37.44 2.83
459 1956 5.689961 ACAATCAAACGGACTAAATTGTTGC 59.310 36.000 0.00 0.00 34.60 4.17
460 1957 4.231718 TCAAACGGACTAAATTGTTGCC 57.768 40.909 0.00 0.00 0.00 4.52
461 1958 2.977169 CAAACGGACTAAATTGTTGCCG 59.023 45.455 0.00 0.00 43.95 5.69
462 1959 0.519961 ACGGACTAAATTGTTGCCGC 59.480 50.000 0.00 0.00 42.25 6.53
463 1960 0.519519 CGGACTAAATTGTTGCCGCA 59.480 50.000 0.00 0.00 31.80 5.69
464 1961 1.727857 CGGACTAAATTGTTGCCGCAC 60.728 52.381 0.00 0.00 31.80 5.34
466 1963 2.584791 GACTAAATTGTTGCCGCACAG 58.415 47.619 0.00 0.00 0.00 3.66
467 1964 1.269448 ACTAAATTGTTGCCGCACAGG 59.731 47.619 0.00 0.00 44.97 4.00
469 1966 0.031994 AAATTGTTGCCGCACAGGAC 59.968 50.000 0.00 0.00 45.00 3.85
470 1967 1.106351 AATTGTTGCCGCACAGGACA 61.106 50.000 0.00 0.00 45.00 4.02
471 1968 1.518056 ATTGTTGCCGCACAGGACAG 61.518 55.000 0.00 0.00 45.00 3.51
472 1969 2.280797 GTTGCCGCACAGGACAGA 60.281 61.111 0.00 0.00 45.00 3.41
473 1970 1.672356 GTTGCCGCACAGGACAGAT 60.672 57.895 0.00 0.00 45.00 2.90
474 1971 1.073025 TTGCCGCACAGGACAGATT 59.927 52.632 0.00 0.00 45.00 2.40
479 1976 1.066858 CCGCACAGGACAGATTAGTGT 60.067 52.381 0.00 0.00 45.00 3.55
494 1991 0.178068 AGTGTATGCGGGCTACCAAG 59.822 55.000 0.00 0.00 36.13 3.61
525 2022 0.438830 CTAACCTGTGCGCGACTTTC 59.561 55.000 12.10 0.00 0.00 2.62
538 2036 1.627550 GACTTTCTTCGCCAGACCGC 61.628 60.000 0.00 0.00 0.00 5.68
561 3625 3.614150 CGCACTCAGCTCACCTTAAACTA 60.614 47.826 0.00 0.00 42.61 2.24
639 3707 2.094545 TGACCACACGACTCATGAGATG 60.095 50.000 29.27 22.84 0.00 2.90
668 3736 2.450609 TAAGAGGAGGACAAACACGC 57.549 50.000 0.00 0.00 0.00 5.34
831 3964 1.856265 CTTTTCCGCGCCTCAGCTTT 61.856 55.000 0.00 0.00 36.60 3.51
845 3988 0.886563 AGCTTTGCATGCCAAGTCTC 59.113 50.000 26.87 14.21 34.34 3.36
926 4614 1.296715 CCTCAACTCAACCCTCCCG 59.703 63.158 0.00 0.00 0.00 5.14
1020 4801 2.111878 GCGTCCATGATGGGAGGG 59.888 66.667 12.26 0.00 41.88 4.30
1136 4926 1.130054 AGCAGCAAGGACAAGGAGGA 61.130 55.000 0.00 0.00 0.00 3.71
1321 5145 1.710339 GCCGCAGCTTTCTTCTACG 59.290 57.895 0.00 0.00 35.50 3.51
1322 5146 1.014564 GCCGCAGCTTTCTTCTACGT 61.015 55.000 0.00 0.00 35.50 3.57
1323 5147 1.734707 GCCGCAGCTTTCTTCTACGTA 60.735 52.381 0.00 0.00 35.50 3.57
1329 5153 4.439016 GCAGCTTTCTTCTACGTAGCTAGT 60.439 45.833 18.00 0.00 40.01 2.57
1355 5188 1.367195 GTGCGTGCGTGTGTGTAAC 60.367 57.895 0.00 0.00 37.35 2.50
1363 5196 2.096174 TGCGTGTGTGTAACTTTGTTCC 59.904 45.455 0.00 0.00 38.04 3.62
1365 5198 3.181504 GCGTGTGTGTAACTTTGTTCCTT 60.182 43.478 0.00 0.00 38.04 3.36
1366 5199 4.673320 GCGTGTGTGTAACTTTGTTCCTTT 60.673 41.667 0.00 0.00 38.04 3.11
1367 5200 4.791163 CGTGTGTGTAACTTTGTTCCTTTG 59.209 41.667 0.00 0.00 38.04 2.77
1368 5201 5.391097 CGTGTGTGTAACTTTGTTCCTTTGA 60.391 40.000 0.00 0.00 38.04 2.69
1374 5207 7.012894 TGTGTAACTTTGTTCCTTTGATCGATT 59.987 33.333 0.00 0.00 38.04 3.34
1449 5289 5.380043 ACAAGTTGACAGGAATTCAGTCAT 58.620 37.500 24.60 13.81 41.42 3.06
1501 5404 3.124636 CCGTTTTTACTTGTCTGCGCTAT 59.875 43.478 9.73 0.00 0.00 2.97
1502 5405 4.081761 CGTTTTTACTTGTCTGCGCTATG 58.918 43.478 9.73 0.00 0.00 2.23
1503 5406 4.143200 CGTTTTTACTTGTCTGCGCTATGA 60.143 41.667 9.73 1.04 0.00 2.15
1504 5407 4.921470 TTTTACTTGTCTGCGCTATGAC 57.079 40.909 9.73 14.69 0.00 3.06
1505 5408 2.579207 TACTTGTCTGCGCTATGACC 57.421 50.000 19.89 8.06 32.67 4.02
1506 5409 0.898320 ACTTGTCTGCGCTATGACCT 59.102 50.000 19.89 5.92 32.67 3.85
1507 5410 2.100197 ACTTGTCTGCGCTATGACCTA 58.900 47.619 19.89 11.02 32.67 3.08
1529 5436 6.870965 CCTATGAGATGTTTGGCTATCAGTAC 59.129 42.308 0.00 0.00 0.00 2.73
1530 5437 5.675684 TGAGATGTTTGGCTATCAGTACA 57.324 39.130 0.00 0.00 0.00 2.90
1531 5438 5.664457 TGAGATGTTTGGCTATCAGTACAG 58.336 41.667 0.00 0.00 0.00 2.74
1668 6742 7.491048 GGAGATCAAGTTGATTCTCTGTTAGAC 59.509 40.741 26.70 15.12 37.20 2.59
1674 6748 6.926313 AGTTGATTCTCTGTTAGACCACTAC 58.074 40.000 0.00 0.00 32.51 2.73
1680 6754 5.506708 TCTCTGTTAGACCACTACTGCATA 58.493 41.667 0.00 0.00 0.00 3.14
1693 7247 1.421646 ACTGCATAAGGGGCTGATACC 59.578 52.381 0.00 0.00 34.70 2.73
1705 7259 1.875576 GCTGATACCATGCCTTCTCGG 60.876 57.143 0.00 0.00 0.00 4.63
1715 7269 1.416401 TGCCTTCTCGGTCTCTTGTTT 59.584 47.619 0.00 0.00 34.25 2.83
1718 7272 3.728845 CCTTCTCGGTCTCTTGTTTCAA 58.271 45.455 0.00 0.00 0.00 2.69
1779 7418 5.576447 TGTCTCCCACAAAAGAAAAAGTC 57.424 39.130 0.00 0.00 29.30 3.01
1839 7513 7.598869 GCATGCATTGAGTGATATTTGATCATT 59.401 33.333 14.21 0.00 0.00 2.57
1862 7616 3.561725 CCCCGCAAGAGAAGTGATATTTC 59.438 47.826 0.00 0.00 43.02 2.17
1906 7749 9.722184 ATGAATATTAGTAGCTACAGTAGACGA 57.278 33.333 25.28 4.54 0.00 4.20
1958 7805 5.462530 TCTCGTGTCCTTGTCAGAAATTA 57.537 39.130 0.00 0.00 0.00 1.40
1985 7832 5.105756 ACATCAGCTAAAAAGTATGGTTGCC 60.106 40.000 0.00 0.00 0.00 4.52
2065 8649 1.480789 TGCTAATCAGACCTGCCGTA 58.519 50.000 0.00 0.00 0.00 4.02
2067 8651 2.035961 TGCTAATCAGACCTGCCGTATC 59.964 50.000 0.00 0.00 0.00 2.24
2072 8656 2.304092 TCAGACCTGCCGTATCGTAAT 58.696 47.619 0.00 0.00 0.00 1.89
2157 8742 5.176590 GCTAGAATCACAGGTCGATGAATTC 59.823 44.000 0.00 0.00 0.00 2.17
2174 8759 0.318699 TTCGACAGCTCAAGGTCACG 60.319 55.000 3.18 0.00 33.66 4.35
2205 8791 2.205074 GGTTCTAGTGCATCCACATCG 58.795 52.381 0.00 0.00 44.53 3.84
2210 8796 4.854924 TGCATCCACATCGCCGGG 62.855 66.667 2.18 0.00 0.00 5.73
2253 8839 8.892723 TGATATGCTTCCAAGTTAAACATACTG 58.107 33.333 0.00 0.00 0.00 2.74
2255 8841 5.381757 TGCTTCCAAGTTAAACATACTGGT 58.618 37.500 0.00 0.00 0.00 4.00
2257 8843 6.016610 TGCTTCCAAGTTAAACATACTGGTTC 60.017 38.462 0.00 0.00 0.00 3.62
2258 8844 6.569801 GCTTCCAAGTTAAACATACTGGTTCC 60.570 42.308 0.00 0.00 0.00 3.62
2259 8845 6.195600 TCCAAGTTAAACATACTGGTTCCT 57.804 37.500 0.00 0.00 0.00 3.36
2260 8846 7.319052 TCCAAGTTAAACATACTGGTTCCTA 57.681 36.000 0.00 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.639113 TTCGAGGCTAATTTTGACCAAATAT 57.361 32.000 0.00 0.00 33.60 1.28
1 2 7.455641 TTTCGAGGCTAATTTTGACCAAATA 57.544 32.000 0.00 0.00 33.60 1.40
2 3 5.975693 TTCGAGGCTAATTTTGACCAAAT 57.024 34.783 0.00 0.00 36.57 2.32
3 4 5.776173 TTTCGAGGCTAATTTTGACCAAA 57.224 34.783 0.00 0.00 0.00 3.28
4 5 5.776173 TTTTCGAGGCTAATTTTGACCAA 57.224 34.783 0.00 0.00 0.00 3.67
5 6 5.525199 GTTTTTCGAGGCTAATTTTGACCA 58.475 37.500 0.00 0.00 0.00 4.02
6 7 4.615541 CGTTTTTCGAGGCTAATTTTGACC 59.384 41.667 0.00 0.00 42.86 4.02
7 8 4.088071 GCGTTTTTCGAGGCTAATTTTGAC 59.912 41.667 0.00 0.00 42.86 3.18
8 9 4.223659 GCGTTTTTCGAGGCTAATTTTGA 58.776 39.130 0.00 0.00 42.86 2.69
9 10 3.978217 TGCGTTTTTCGAGGCTAATTTTG 59.022 39.130 0.00 0.00 42.86 2.44
10 11 4.231718 TGCGTTTTTCGAGGCTAATTTT 57.768 36.364 0.00 0.00 42.86 1.82
11 12 3.907894 TGCGTTTTTCGAGGCTAATTT 57.092 38.095 0.00 0.00 42.86 1.82
12 13 4.434713 AATGCGTTTTTCGAGGCTAATT 57.565 36.364 0.00 0.00 42.86 1.40
13 14 4.873827 TCTAATGCGTTTTTCGAGGCTAAT 59.126 37.500 0.00 0.00 42.86 1.73
14 15 4.092383 GTCTAATGCGTTTTTCGAGGCTAA 59.908 41.667 0.00 0.00 42.86 3.09
15 16 3.615496 GTCTAATGCGTTTTTCGAGGCTA 59.385 43.478 0.00 0.00 42.86 3.93
16 17 2.415512 GTCTAATGCGTTTTTCGAGGCT 59.584 45.455 0.00 0.00 42.86 4.58
17 18 2.475685 GGTCTAATGCGTTTTTCGAGGC 60.476 50.000 0.00 0.00 42.86 4.70
18 19 2.095372 GGGTCTAATGCGTTTTTCGAGG 59.905 50.000 0.00 0.00 42.86 4.63
19 20 3.000727 AGGGTCTAATGCGTTTTTCGAG 58.999 45.455 0.00 0.00 42.86 4.04
20 21 3.048337 AGGGTCTAATGCGTTTTTCGA 57.952 42.857 0.00 0.00 42.86 3.71
21 22 6.780706 ATATAGGGTCTAATGCGTTTTTCG 57.219 37.500 0.00 0.00 43.12 3.46
22 23 9.654663 ATCTATATAGGGTCTAATGCGTTTTTC 57.345 33.333 9.89 0.00 0.00 2.29
23 24 9.436957 CATCTATATAGGGTCTAATGCGTTTTT 57.563 33.333 9.89 0.00 0.00 1.94
24 25 8.041323 CCATCTATATAGGGTCTAATGCGTTTT 58.959 37.037 9.89 0.00 0.00 2.43
25 26 7.399191 TCCATCTATATAGGGTCTAATGCGTTT 59.601 37.037 9.89 0.00 0.00 3.60
26 27 6.895756 TCCATCTATATAGGGTCTAATGCGTT 59.104 38.462 9.89 0.00 0.00 4.84
27 28 6.432581 TCCATCTATATAGGGTCTAATGCGT 58.567 40.000 9.89 0.00 0.00 5.24
28 29 6.961360 TCCATCTATATAGGGTCTAATGCG 57.039 41.667 9.89 1.15 0.00 4.73
29 30 7.565398 TCCTTCCATCTATATAGGGTCTAATGC 59.435 40.741 9.89 0.00 0.00 3.56
30 31 9.142014 CTCCTTCCATCTATATAGGGTCTAATG 57.858 40.741 9.89 5.15 0.00 1.90
31 32 8.293216 CCTCCTTCCATCTATATAGGGTCTAAT 58.707 40.741 9.89 0.00 0.00 1.73
32 33 7.313276 CCCTCCTTCCATCTATATAGGGTCTAA 60.313 44.444 9.89 0.00 38.09 2.10
33 34 6.162420 CCCTCCTTCCATCTATATAGGGTCTA 59.838 46.154 9.89 0.00 38.09 2.59
34 35 5.042979 CCCTCCTTCCATCTATATAGGGTCT 60.043 48.000 9.89 0.00 38.09 3.85
35 36 5.043281 TCCCTCCTTCCATCTATATAGGGTC 60.043 48.000 9.89 0.00 42.58 4.46
36 37 4.870361 TCCCTCCTTCCATCTATATAGGGT 59.130 45.833 9.89 0.00 42.58 4.34
37 38 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
38 39 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
39 40 7.286775 GCTTACTCCCTCCTTCCATCTATATAG 59.713 44.444 3.10 3.10 0.00 1.31
40 41 7.126733 GCTTACTCCCTCCTTCCATCTATATA 58.873 42.308 0.00 0.00 0.00 0.86
41 42 5.961421 GCTTACTCCCTCCTTCCATCTATAT 59.039 44.000 0.00 0.00 0.00 0.86
42 43 5.334421 GCTTACTCCCTCCTTCCATCTATA 58.666 45.833 0.00 0.00 0.00 1.31
43 44 4.164204 GCTTACTCCCTCCTTCCATCTAT 58.836 47.826 0.00 0.00 0.00 1.98
44 45 3.577919 GCTTACTCCCTCCTTCCATCTA 58.422 50.000 0.00 0.00 0.00 1.98
45 46 2.403561 GCTTACTCCCTCCTTCCATCT 58.596 52.381 0.00 0.00 0.00 2.90
46 47 1.069358 CGCTTACTCCCTCCTTCCATC 59.931 57.143 0.00 0.00 0.00 3.51
47 48 1.123928 CGCTTACTCCCTCCTTCCAT 58.876 55.000 0.00 0.00 0.00 3.41
48 49 0.040646 TCGCTTACTCCCTCCTTCCA 59.959 55.000 0.00 0.00 0.00 3.53
49 50 0.460722 GTCGCTTACTCCCTCCTTCC 59.539 60.000 0.00 0.00 0.00 3.46
50 51 1.476477 AGTCGCTTACTCCCTCCTTC 58.524 55.000 0.00 0.00 30.33 3.46
51 52 1.939980 AAGTCGCTTACTCCCTCCTT 58.060 50.000 0.00 0.00 37.50 3.36
52 53 2.377073 GTAAGTCGCTTACTCCCTCCT 58.623 52.381 17.18 0.00 41.93 3.69
53 54 1.408340 GGTAAGTCGCTTACTCCCTCC 59.592 57.143 21.09 7.42 43.89 4.30
54 55 2.358582 GAGGTAAGTCGCTTACTCCCTC 59.641 54.545 21.09 17.18 43.89 4.30
55 56 2.025131 AGAGGTAAGTCGCTTACTCCCT 60.025 50.000 21.09 14.13 43.89 4.20
56 57 2.358582 GAGAGGTAAGTCGCTTACTCCC 59.641 54.545 21.09 13.83 43.89 4.30
57 58 3.015327 TGAGAGGTAAGTCGCTTACTCC 58.985 50.000 21.09 15.43 43.89 3.85
58 59 4.413969 GTTGAGAGGTAAGTCGCTTACTC 58.586 47.826 21.09 17.22 43.89 2.59
59 60 3.119919 CGTTGAGAGGTAAGTCGCTTACT 60.120 47.826 21.09 12.17 43.89 2.24
60 61 3.169733 CGTTGAGAGGTAAGTCGCTTAC 58.830 50.000 16.55 16.55 43.75 2.34
61 62 2.415090 GCGTTGAGAGGTAAGTCGCTTA 60.415 50.000 0.00 0.00 39.26 3.09
62 63 1.669211 GCGTTGAGAGGTAAGTCGCTT 60.669 52.381 0.00 0.00 39.26 4.68
63 64 0.109226 GCGTTGAGAGGTAAGTCGCT 60.109 55.000 0.00 0.00 39.26 4.93
64 65 0.388134 TGCGTTGAGAGGTAAGTCGC 60.388 55.000 0.00 0.00 41.98 5.19
65 66 1.986378 CTTGCGTTGAGAGGTAAGTCG 59.014 52.381 0.00 0.00 31.45 4.18
66 67 2.338500 CCTTGCGTTGAGAGGTAAGTC 58.662 52.381 0.00 0.00 33.34 3.01
67 68 1.608283 GCCTTGCGTTGAGAGGTAAGT 60.608 52.381 0.00 0.00 33.34 2.24
68 69 1.079503 GCCTTGCGTTGAGAGGTAAG 58.920 55.000 0.00 0.00 34.47 2.34
69 70 3.226884 GCCTTGCGTTGAGAGGTAA 57.773 52.632 0.00 0.00 33.03 2.85
81 82 4.166011 CGGCTGTTAGCGCCTTGC 62.166 66.667 2.29 1.37 45.37 4.01
82 83 3.499737 CCGGCTGTTAGCGCCTTG 61.500 66.667 2.29 0.00 45.37 3.61
102 103 5.901884 CGCTGTTTAATTACCGCTCAATTAG 59.098 40.000 0.00 0.00 31.39 1.73
103 104 5.728344 GCGCTGTTTAATTACCGCTCAATTA 60.728 40.000 0.00 0.00 38.52 1.40
104 105 4.658071 CGCTGTTTAATTACCGCTCAATT 58.342 39.130 0.00 0.00 0.00 2.32
105 106 3.486875 GCGCTGTTTAATTACCGCTCAAT 60.487 43.478 0.00 0.00 38.52 2.57
106 107 2.159626 GCGCTGTTTAATTACCGCTCAA 60.160 45.455 0.00 0.00 38.52 3.02
107 108 1.395608 GCGCTGTTTAATTACCGCTCA 59.604 47.619 0.00 0.00 38.52 4.26
108 109 1.395608 TGCGCTGTTTAATTACCGCTC 59.604 47.619 9.73 0.00 41.71 5.03
109 110 1.444836 TGCGCTGTTTAATTACCGCT 58.555 45.000 9.73 0.00 41.71 5.52
110 111 2.108700 CATGCGCTGTTTAATTACCGC 58.891 47.619 9.73 0.00 41.55 5.68
111 112 2.108700 GCATGCGCTGTTTAATTACCG 58.891 47.619 9.73 0.00 34.30 4.02
112 113 2.108700 CGCATGCGCTGTTTAATTACC 58.891 47.619 29.09 0.00 35.30 2.85
125 126 3.630148 CCGTAAGAGGCGCATGCG 61.630 66.667 34.83 34.83 41.27 4.73
126 127 3.272334 CCCGTAAGAGGCGCATGC 61.272 66.667 10.83 7.91 43.02 4.06
127 128 1.592669 CTCCCGTAAGAGGCGCATG 60.593 63.158 10.83 0.00 43.02 4.06
128 129 1.739338 CTCTCCCGTAAGAGGCGCAT 61.739 60.000 10.83 0.00 39.33 4.73
129 130 2.361992 TCTCCCGTAAGAGGCGCA 60.362 61.111 10.83 0.00 43.02 6.09
130 131 1.664321 TTCTCTCCCGTAAGAGGCGC 61.664 60.000 0.00 0.00 42.58 6.53
131 132 0.815734 TTTCTCTCCCGTAAGAGGCG 59.184 55.000 10.42 0.00 42.58 5.52
132 133 2.418884 CCTTTTCTCTCCCGTAAGAGGC 60.419 54.545 10.42 0.00 42.58 4.70
133 134 3.097614 TCCTTTTCTCTCCCGTAAGAGG 58.902 50.000 10.42 0.00 42.58 3.69
134 135 3.764972 AGTCCTTTTCTCTCCCGTAAGAG 59.235 47.826 5.21 5.21 43.50 2.85
135 136 3.775910 AGTCCTTTTCTCTCCCGTAAGA 58.224 45.455 0.00 0.00 43.02 2.10
136 137 4.440387 GCTAGTCCTTTTCTCTCCCGTAAG 60.440 50.000 0.00 0.00 0.00 2.34
137 138 3.446516 GCTAGTCCTTTTCTCTCCCGTAA 59.553 47.826 0.00 0.00 0.00 3.18
138 139 3.022406 GCTAGTCCTTTTCTCTCCCGTA 58.978 50.000 0.00 0.00 0.00 4.02
139 140 1.826096 GCTAGTCCTTTTCTCTCCCGT 59.174 52.381 0.00 0.00 0.00 5.28
140 141 1.202313 CGCTAGTCCTTTTCTCTCCCG 60.202 57.143 0.00 0.00 0.00 5.14
141 142 1.826096 ACGCTAGTCCTTTTCTCTCCC 59.174 52.381 0.00 0.00 0.00 4.30
142 143 3.153676 GACGCTAGTCCTTTTCTCTCC 57.846 52.381 0.00 0.00 41.41 3.71
154 155 1.142748 GCAGGCATCAGACGCTAGT 59.857 57.895 0.00 0.00 0.00 2.57
155 156 1.593750 GGCAGGCATCAGACGCTAG 60.594 63.158 0.00 0.00 0.00 3.42
156 157 1.617018 AAGGCAGGCATCAGACGCTA 61.617 55.000 0.00 0.00 0.00 4.26
157 158 2.475371 AAAGGCAGGCATCAGACGCT 62.475 55.000 0.00 0.00 0.00 5.07
158 159 2.042831 AAAGGCAGGCATCAGACGC 61.043 57.895 0.00 0.00 0.00 5.19
159 160 1.798735 CAAAGGCAGGCATCAGACG 59.201 57.895 0.00 0.00 0.00 4.18
160 161 1.509923 GCAAAGGCAGGCATCAGAC 59.490 57.895 0.00 0.00 40.72 3.51
161 162 2.042259 CGCAAAGGCAGGCATCAGA 61.042 57.895 0.00 0.00 41.24 3.27
162 163 2.488355 CGCAAAGGCAGGCATCAG 59.512 61.111 0.00 0.00 41.24 2.90
163 164 3.751246 GCGCAAAGGCAGGCATCA 61.751 61.111 0.30 0.00 41.24 3.07
164 165 4.503314 GGCGCAAAGGCAGGCATC 62.503 66.667 10.83 0.00 45.92 3.91
171 172 2.709475 CTACATCGGCGCAAAGGC 59.291 61.111 10.83 0.00 42.76 4.35
172 173 2.709475 GCTACATCGGCGCAAAGG 59.291 61.111 10.83 0.00 0.00 3.11
173 174 2.321060 CGCTACATCGGCGCAAAG 59.679 61.111 10.83 0.00 45.83 2.77
179 180 2.654404 GTCGGACGCTACATCGGC 60.654 66.667 0.00 0.00 36.59 5.54
180 181 2.352001 CGTCGGACGCTACATCGG 60.352 66.667 18.36 0.00 33.65 4.18
193 194 2.890474 CCAGAAATCCCGGCGTCG 60.890 66.667 0.29 0.29 0.00 5.12
194 195 2.513897 CCCAGAAATCCCGGCGTC 60.514 66.667 6.01 0.00 0.00 5.19
195 196 4.796495 GCCCAGAAATCCCGGCGT 62.796 66.667 6.01 0.00 0.00 5.68
197 198 2.279037 TTAGGCCCAGAAATCCCGGC 62.279 60.000 0.00 0.00 40.85 6.13
198 199 0.465642 GTTAGGCCCAGAAATCCCGG 60.466 60.000 0.00 0.00 0.00 5.73
199 200 0.546598 AGTTAGGCCCAGAAATCCCG 59.453 55.000 0.00 0.00 0.00 5.14
200 201 2.024306 GCAGTTAGGCCCAGAAATCCC 61.024 57.143 0.00 0.00 0.00 3.85
201 202 1.393603 GCAGTTAGGCCCAGAAATCC 58.606 55.000 0.00 0.00 0.00 3.01
211 212 1.383523 CCTTAGCTTGGCAGTTAGGC 58.616 55.000 0.00 0.00 44.50 3.93
212 213 1.559682 TCCCTTAGCTTGGCAGTTAGG 59.440 52.381 0.00 0.00 0.00 2.69
213 214 3.350219 TTCCCTTAGCTTGGCAGTTAG 57.650 47.619 0.00 0.00 0.00 2.34
214 215 3.799432 TTTCCCTTAGCTTGGCAGTTA 57.201 42.857 0.00 0.00 0.00 2.24
215 216 2.675658 TTTCCCTTAGCTTGGCAGTT 57.324 45.000 0.00 0.00 0.00 3.16
216 217 2.675658 TTTTCCCTTAGCTTGGCAGT 57.324 45.000 0.00 0.00 0.00 4.40
217 218 4.706962 ACTAATTTTCCCTTAGCTTGGCAG 59.293 41.667 0.00 0.00 30.80 4.85
218 219 4.672899 ACTAATTTTCCCTTAGCTTGGCA 58.327 39.130 0.00 0.00 30.80 4.92
219 220 5.299531 CCTACTAATTTTCCCTTAGCTTGGC 59.700 44.000 0.00 0.00 30.80 4.52
220 221 6.659824 TCCTACTAATTTTCCCTTAGCTTGG 58.340 40.000 0.00 0.00 30.80 3.61
221 222 8.575649 TTTCCTACTAATTTTCCCTTAGCTTG 57.424 34.615 0.00 0.00 30.80 4.01
222 223 9.769677 AATTTCCTACTAATTTTCCCTTAGCTT 57.230 29.630 0.00 0.00 30.80 3.74
223 224 9.190317 CAATTTCCTACTAATTTTCCCTTAGCT 57.810 33.333 0.00 0.00 30.80 3.32
224 225 9.185680 TCAATTTCCTACTAATTTTCCCTTAGC 57.814 33.333 0.00 0.00 30.80 3.09
227 228 9.201989 GGATCAATTTCCTACTAATTTTCCCTT 57.798 33.333 0.00 0.00 32.68 3.95
228 229 8.569596 AGGATCAATTTCCTACTAATTTTCCCT 58.430 33.333 0.00 0.00 44.50 4.20
229 230 8.633561 CAGGATCAATTTCCTACTAATTTTCCC 58.366 37.037 0.00 0.00 44.54 3.97
230 231 9.190317 ACAGGATCAATTTCCTACTAATTTTCC 57.810 33.333 0.00 0.00 44.54 3.13
232 233 9.753674 TGACAGGATCAATTTCCTACTAATTTT 57.246 29.630 0.00 0.00 44.54 1.82
233 234 9.178758 GTGACAGGATCAATTTCCTACTAATTT 57.821 33.333 0.00 0.00 44.54 1.82
234 235 7.775561 GGTGACAGGATCAATTTCCTACTAATT 59.224 37.037 0.00 0.00 44.54 1.40
235 236 7.127955 AGGTGACAGGATCAATTTCCTACTAAT 59.872 37.037 0.00 0.00 44.54 1.73
236 237 6.443849 AGGTGACAGGATCAATTTCCTACTAA 59.556 38.462 0.00 0.00 44.54 2.24
237 238 5.964477 AGGTGACAGGATCAATTTCCTACTA 59.036 40.000 0.00 0.00 44.54 1.82
238 239 4.785376 AGGTGACAGGATCAATTTCCTACT 59.215 41.667 0.00 0.00 44.54 2.57
239 240 5.104259 AGGTGACAGGATCAATTTCCTAC 57.896 43.478 0.00 0.00 44.54 3.18
240 241 4.164221 GGAGGTGACAGGATCAATTTCCTA 59.836 45.833 0.00 0.00 44.54 2.94
242 243 3.282885 GGAGGTGACAGGATCAATTTCC 58.717 50.000 0.00 0.00 39.72 3.13
243 244 3.054065 AGGGAGGTGACAGGATCAATTTC 60.054 47.826 0.00 0.00 39.72 2.17
244 245 2.922283 AGGGAGGTGACAGGATCAATTT 59.078 45.455 0.00 0.00 39.72 1.82
245 246 2.566746 AGGGAGGTGACAGGATCAATT 58.433 47.619 0.00 0.00 39.72 2.32
246 247 2.277008 AGGGAGGTGACAGGATCAAT 57.723 50.000 0.00 0.00 39.72 2.57
247 248 2.940514 TAGGGAGGTGACAGGATCAA 57.059 50.000 0.00 0.00 39.72 2.57
248 249 2.752030 CTTAGGGAGGTGACAGGATCA 58.248 52.381 0.00 0.00 33.79 2.92
249 250 1.414550 GCTTAGGGAGGTGACAGGATC 59.585 57.143 0.00 0.00 0.00 3.36
250 251 1.008938 AGCTTAGGGAGGTGACAGGAT 59.991 52.381 0.00 0.00 34.08 3.24
251 252 0.413832 AGCTTAGGGAGGTGACAGGA 59.586 55.000 0.00 0.00 34.08 3.86
252 253 1.208293 GAAGCTTAGGGAGGTGACAGG 59.792 57.143 0.00 0.00 35.94 4.00
253 254 1.208293 GGAAGCTTAGGGAGGTGACAG 59.792 57.143 0.00 0.00 35.94 3.51
254 255 1.276622 GGAAGCTTAGGGAGGTGACA 58.723 55.000 0.00 0.00 35.94 3.58
255 256 0.175989 CGGAAGCTTAGGGAGGTGAC 59.824 60.000 0.00 0.00 35.94 3.67
256 257 0.976073 CCGGAAGCTTAGGGAGGTGA 60.976 60.000 9.18 0.00 35.94 4.02
257 258 1.522569 CCGGAAGCTTAGGGAGGTG 59.477 63.158 9.18 0.00 35.94 4.00
258 259 2.368011 GCCGGAAGCTTAGGGAGGT 61.368 63.158 17.21 0.00 38.99 3.85
259 260 2.506472 GCCGGAAGCTTAGGGAGG 59.494 66.667 17.21 9.42 38.99 4.30
260 261 2.107141 CGCCGGAAGCTTAGGGAG 59.893 66.667 17.21 11.13 40.39 4.30
261 262 2.288025 AACGCCGGAAGCTTAGGGA 61.288 57.895 17.21 0.00 40.39 4.20
262 263 2.106683 CAACGCCGGAAGCTTAGGG 61.107 63.158 18.70 14.71 40.39 3.53
263 264 0.108520 TACAACGCCGGAAGCTTAGG 60.109 55.000 5.05 14.33 40.39 2.69
264 265 1.135199 TCTACAACGCCGGAAGCTTAG 60.135 52.381 5.05 0.00 40.39 2.18
265 266 0.889994 TCTACAACGCCGGAAGCTTA 59.110 50.000 5.05 0.00 40.39 3.09
266 267 0.249398 ATCTACAACGCCGGAAGCTT 59.751 50.000 5.05 0.00 40.39 3.74
267 268 0.460284 CATCTACAACGCCGGAAGCT 60.460 55.000 5.05 0.00 40.39 3.74
268 269 2.006772 CATCTACAACGCCGGAAGC 58.993 57.895 5.05 0.00 38.52 3.86
269 270 1.429148 GGCATCTACAACGCCGGAAG 61.429 60.000 5.05 0.00 35.79 3.46
270 271 1.448893 GGCATCTACAACGCCGGAA 60.449 57.895 5.05 0.00 35.79 4.30
271 272 2.185867 GGCATCTACAACGCCGGA 59.814 61.111 5.05 0.00 35.79 5.14
274 275 1.873591 CATAAGGGCATCTACAACGCC 59.126 52.381 0.00 0.00 45.47 5.68
275 276 2.802816 CTCATAAGGGCATCTACAACGC 59.197 50.000 0.00 0.00 0.00 4.84
276 277 4.051922 GTCTCATAAGGGCATCTACAACG 58.948 47.826 0.00 0.00 0.00 4.10
277 278 5.023533 TGTCTCATAAGGGCATCTACAAC 57.976 43.478 0.00 0.00 0.00 3.32
278 279 5.692115 TTGTCTCATAAGGGCATCTACAA 57.308 39.130 0.00 0.00 0.00 2.41
279 280 5.692115 TTTGTCTCATAAGGGCATCTACA 57.308 39.130 0.00 0.00 0.00 2.74
280 281 5.006746 CGTTTTGTCTCATAAGGGCATCTAC 59.993 44.000 0.00 0.00 0.00 2.59
281 282 5.105106 TCGTTTTGTCTCATAAGGGCATCTA 60.105 40.000 0.00 0.00 0.00 1.98
282 283 3.941483 CGTTTTGTCTCATAAGGGCATCT 59.059 43.478 0.00 0.00 0.00 2.90
283 284 3.938963 TCGTTTTGTCTCATAAGGGCATC 59.061 43.478 0.00 0.00 0.00 3.91
284 285 3.941483 CTCGTTTTGTCTCATAAGGGCAT 59.059 43.478 0.00 0.00 0.00 4.40
285 286 3.334691 CTCGTTTTGTCTCATAAGGGCA 58.665 45.455 0.00 0.00 0.00 5.36
286 287 2.678336 CCTCGTTTTGTCTCATAAGGGC 59.322 50.000 0.00 0.00 0.00 5.19
287 288 2.678336 GCCTCGTTTTGTCTCATAAGGG 59.322 50.000 0.00 0.00 0.00 3.95
288 289 3.372206 CAGCCTCGTTTTGTCTCATAAGG 59.628 47.826 0.00 0.00 0.00 2.69
296 297 0.874390 TGATGCAGCCTCGTTTTGTC 59.126 50.000 0.00 0.00 0.00 3.18
330 331 2.202878 GGATGCAGCCGAGCGTAA 60.203 61.111 4.62 0.00 37.31 3.18
353 354 1.072505 AAACGCTCGAATGGGTGGT 59.927 52.632 0.00 0.00 33.36 4.16
356 357 1.577328 CTGCAAACGCTCGAATGGGT 61.577 55.000 0.00 0.00 34.52 4.51
359 360 1.860423 CGCTGCAAACGCTCGAATG 60.860 57.895 0.00 0.00 0.00 2.67
364 365 2.220455 CTGTCTCGCTGCAAACGCTC 62.220 60.000 0.00 0.00 0.00 5.03
369 370 0.966179 TAGGACTGTCTCGCTGCAAA 59.034 50.000 7.85 0.00 0.00 3.68
370 371 0.528017 CTAGGACTGTCTCGCTGCAA 59.472 55.000 7.85 0.00 0.00 4.08
371 372 0.322546 TCTAGGACTGTCTCGCTGCA 60.323 55.000 7.85 0.00 0.00 4.41
372 373 0.380378 CTCTAGGACTGTCTCGCTGC 59.620 60.000 7.85 0.00 0.00 5.25
376 377 2.571212 AGCATCTCTAGGACTGTCTCG 58.429 52.381 7.85 0.00 0.00 4.04
384 1881 8.998277 ATACTAACTTTGTAGCATCTCTAGGA 57.002 34.615 0.00 0.00 0.00 2.94
397 1894 6.414732 TCAGCCTGCATAATACTAACTTTGT 58.585 36.000 0.00 0.00 0.00 2.83
398 1895 6.925610 TCAGCCTGCATAATACTAACTTTG 57.074 37.500 0.00 0.00 0.00 2.77
408 1905 5.597806 CATTCATTGTTCAGCCTGCATAAT 58.402 37.500 0.00 0.00 0.00 1.28
409 1906 4.678574 GCATTCATTGTTCAGCCTGCATAA 60.679 41.667 0.00 0.00 0.00 1.90
418 1915 5.705902 TGATTGTCTGCATTCATTGTTCAG 58.294 37.500 0.00 0.00 32.17 3.02
423 1920 4.325204 CCGTTTGATTGTCTGCATTCATTG 59.675 41.667 0.00 0.00 35.66 2.82
425 1922 3.758023 TCCGTTTGATTGTCTGCATTCAT 59.242 39.130 0.00 0.00 35.66 2.57
447 1944 1.269448 CCTGTGCGGCAACAATTTAGT 59.731 47.619 3.23 0.00 0.00 2.24
450 1947 0.031994 GTCCTGTGCGGCAACAATTT 59.968 50.000 3.23 0.00 0.00 1.82
452 1949 1.518056 CTGTCCTGTGCGGCAACAAT 61.518 55.000 3.23 0.00 0.00 2.71
453 1950 2.124529 TGTCCTGTGCGGCAACAA 60.125 55.556 3.23 0.00 0.00 2.83
454 1951 2.395988 ATCTGTCCTGTGCGGCAACA 62.396 55.000 3.23 4.48 0.00 3.33
455 1952 1.237285 AATCTGTCCTGTGCGGCAAC 61.237 55.000 3.23 0.00 0.00 4.17
456 1953 0.323302 TAATCTGTCCTGTGCGGCAA 59.677 50.000 3.23 0.00 0.00 4.52
457 1954 0.108186 CTAATCTGTCCTGTGCGGCA 60.108 55.000 0.00 0.00 0.00 5.69
459 1956 1.066858 ACACTAATCTGTCCTGTGCGG 60.067 52.381 0.00 0.00 32.49 5.69
460 1957 2.370281 ACACTAATCTGTCCTGTGCG 57.630 50.000 0.00 0.00 32.49 5.34
461 1958 3.557595 GCATACACTAATCTGTCCTGTGC 59.442 47.826 0.00 0.00 32.49 4.57
462 1959 3.798878 CGCATACACTAATCTGTCCTGTG 59.201 47.826 0.00 0.00 35.09 3.66
463 1960 3.181475 CCGCATACACTAATCTGTCCTGT 60.181 47.826 0.00 0.00 0.00 4.00
464 1961 3.384668 CCGCATACACTAATCTGTCCTG 58.615 50.000 0.00 0.00 0.00 3.86
466 1963 2.755650 CCCGCATACACTAATCTGTCC 58.244 52.381 0.00 0.00 0.00 4.02
467 1964 2.135933 GCCCGCATACACTAATCTGTC 58.864 52.381 0.00 0.00 0.00 3.51
469 1966 2.533266 AGCCCGCATACACTAATCTG 57.467 50.000 0.00 0.00 0.00 2.90
470 1967 2.299297 GGTAGCCCGCATACACTAATCT 59.701 50.000 0.00 0.00 0.00 2.40
471 1968 2.036733 TGGTAGCCCGCATACACTAATC 59.963 50.000 0.00 0.00 0.00 1.75
472 1969 2.043992 TGGTAGCCCGCATACACTAAT 58.956 47.619 0.00 0.00 0.00 1.73
473 1970 1.487300 TGGTAGCCCGCATACACTAA 58.513 50.000 0.00 0.00 0.00 2.24
474 1971 1.411246 CTTGGTAGCCCGCATACACTA 59.589 52.381 0.00 0.00 0.00 2.74
499 1996 2.040544 CGCACAGGTTAGCCAAGGG 61.041 63.158 0.00 0.00 37.19 3.95
502 1999 3.047280 CGCGCACAGGTTAGCCAA 61.047 61.111 8.75 0.00 37.19 4.52
511 2008 1.128611 CGAAGAAAGTCGCGCACAG 59.871 57.895 8.75 0.00 33.66 3.66
561 3625 1.006102 CTTCCTTCCTGCGACGTGT 60.006 57.895 0.00 0.00 0.00 4.49
639 3707 2.101082 GTCCTCCTCTTATTGACCGTCC 59.899 54.545 0.00 0.00 0.00 4.79
668 3736 2.973899 CGGAGTGGGAGAGTGGTG 59.026 66.667 0.00 0.00 0.00 4.17
831 3964 2.362736 GAAGATGAGACTTGGCATGCA 58.637 47.619 21.36 2.54 0.00 3.96
926 4614 2.531522 AATTGCTTTGGGACTTGTGC 57.468 45.000 0.00 0.00 0.00 4.57
1020 4801 1.516423 GTAGGCCTCCACGAAGTCC 59.484 63.158 9.68 0.00 41.61 3.85
1147 4937 0.612744 GCAGCCTTCTTCTCTCCAGT 59.387 55.000 0.00 0.00 0.00 4.00
1320 5144 0.924363 CACGCACGCTACTAGCTACG 60.924 60.000 6.50 9.01 39.60 3.51
1321 5145 1.201098 GCACGCACGCTACTAGCTAC 61.201 60.000 6.50 0.00 39.60 3.58
1322 5146 1.063649 GCACGCACGCTACTAGCTA 59.936 57.895 6.50 0.00 39.60 3.32
1323 5147 2.202623 GCACGCACGCTACTAGCT 60.203 61.111 6.50 0.00 39.60 3.32
1336 5160 2.861701 TTACACACACGCACGCACG 61.862 57.895 0.00 0.00 39.50 5.34
1337 5161 1.367195 GTTACACACACGCACGCAC 60.367 57.895 0.00 0.00 0.00 5.34
1338 5162 1.084935 AAGTTACACACACGCACGCA 61.085 50.000 0.00 0.00 0.00 5.24
1355 5188 6.428385 AGCTAATCGATCAAAGGAACAAAG 57.572 37.500 0.00 0.00 0.00 2.77
1363 5196 6.045318 TCCAAGAGAAGCTAATCGATCAAAG 58.955 40.000 0.00 0.00 0.00 2.77
1365 5198 5.452496 CCTCCAAGAGAAGCTAATCGATCAA 60.452 44.000 0.00 0.00 0.00 2.57
1366 5199 4.038522 CCTCCAAGAGAAGCTAATCGATCA 59.961 45.833 0.00 0.00 0.00 2.92
1367 5200 4.279671 TCCTCCAAGAGAAGCTAATCGATC 59.720 45.833 0.00 0.00 0.00 3.69
1368 5201 4.219115 TCCTCCAAGAGAAGCTAATCGAT 58.781 43.478 0.00 0.00 0.00 3.59
1374 5207 2.828520 CACACTCCTCCAAGAGAAGCTA 59.171 50.000 0.00 0.00 37.33 3.32
1443 5283 6.628919 TTAATGCAGGATCATTCATGACTG 57.371 37.500 6.72 6.72 40.03 3.51
1449 5289 5.210430 ACCCAATTAATGCAGGATCATTCA 58.790 37.500 0.00 0.00 37.75 2.57
1454 5294 4.202151 GGTCAACCCAATTAATGCAGGATC 60.202 45.833 0.00 0.00 0.00 3.36
1501 5404 5.366477 TGATAGCCAAACATCTCATAGGTCA 59.634 40.000 0.00 0.00 0.00 4.02
1502 5405 5.858381 TGATAGCCAAACATCTCATAGGTC 58.142 41.667 0.00 0.00 0.00 3.85
1503 5406 5.367937 ACTGATAGCCAAACATCTCATAGGT 59.632 40.000 0.00 0.00 0.00 3.08
1504 5407 5.862845 ACTGATAGCCAAACATCTCATAGG 58.137 41.667 0.00 0.00 0.00 2.57
1505 5408 7.436933 TGTACTGATAGCCAAACATCTCATAG 58.563 38.462 0.00 0.00 0.00 2.23
1506 5409 7.287696 TCTGTACTGATAGCCAAACATCTCATA 59.712 37.037 0.00 0.00 0.00 2.15
1507 5410 6.098838 TCTGTACTGATAGCCAAACATCTCAT 59.901 38.462 0.00 0.00 0.00 2.90
1529 5436 0.885879 AACAGCCACATGCATGTCTG 59.114 50.000 31.74 31.74 44.83 3.51
1530 5437 1.271379 CAAACAGCCACATGCATGTCT 59.729 47.619 29.23 20.79 44.83 3.41
1531 5438 1.670674 CCAAACAGCCACATGCATGTC 60.671 52.381 29.23 18.85 44.83 3.06
1668 6742 0.839946 AGCCCCTTATGCAGTAGTGG 59.160 55.000 0.00 0.00 0.00 4.00
1674 6748 1.421268 TGGTATCAGCCCCTTATGCAG 59.579 52.381 0.00 0.00 0.00 4.41
1680 6754 1.538666 GGCATGGTATCAGCCCCTT 59.461 57.895 5.43 0.00 42.58 3.95
1693 7247 1.066573 ACAAGAGACCGAGAAGGCATG 60.067 52.381 0.00 0.00 46.52 4.06
1779 7418 6.428159 AGCATGACAAGTTGTTAGAAAGGTAG 59.572 38.462 10.45 0.00 0.00 3.18
1839 7513 1.860641 TATCACTTCTCTTGCGGGGA 58.139 50.000 0.00 0.00 0.00 4.81
1906 7749 4.311816 TCGTCTTCGTTTAAGTTCCTGT 57.688 40.909 0.00 0.00 36.51 4.00
1958 7805 5.256474 ACCATACTTTTTAGCTGATGTGCT 58.744 37.500 0.00 0.00 46.11 4.40
1985 7832 7.918536 ACTTCATGCCTTGCTATTGATATAG 57.081 36.000 0.00 0.00 37.40 1.31
2028 8612 3.087031 AGCAATCTCAACCCTTGATGTG 58.913 45.455 0.00 0.00 39.30 3.21
2065 8649 8.443160 CGATTAGTTGATATGCCAAATTACGAT 58.557 33.333 0.00 0.00 0.00 3.73
2067 8651 7.015289 CCGATTAGTTGATATGCCAAATTACG 58.985 38.462 0.00 0.00 0.00 3.18
2072 8656 8.729756 CAATATCCGATTAGTTGATATGCCAAA 58.270 33.333 0.00 0.00 33.23 3.28
2157 8742 0.730834 CTCGTGACCTTGAGCTGTCG 60.731 60.000 0.00 0.00 34.18 4.35
2174 8759 3.181503 TGCACTAGAACCGTCGTATTCTC 60.182 47.826 11.16 0.96 36.56 2.87
2205 8791 1.383456 TTCATGCTTGCATACCCGGC 61.383 55.000 7.84 0.00 0.00 6.13
2210 8796 7.909777 GCATATCATATTCATGCTTGCATAC 57.090 36.000 7.84 0.00 41.44 2.39



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.