Multiple sequence alignment - TraesCS6B01G085600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G085600 chr6B 100.000 2255 0 0 1 2255 62180030 62177776 0.000000e+00 4165.0
1 TraesCS6B01G085600 chr6B 88.054 1038 79 20 474 1489 62213913 62212899 0.000000e+00 1188.0
2 TraesCS6B01G085600 chr6B 88.235 510 45 11 989 1489 62154925 62154422 1.490000e-166 595.0
3 TraesCS6B01G085600 chr6B 84.568 324 18 10 989 1299 62146401 62146097 2.190000e-75 292.0
4 TraesCS6B01G085600 chr6B 87.302 252 27 2 207 457 688594583 688594830 1.320000e-72 283.0
5 TraesCS6B01G085600 chr6B 84.762 210 20 9 729 929 62146744 62146538 1.370000e-47 200.0
6 TraesCS6B01G085600 chr6B 86.620 142 13 2 1644 1783 62212816 62212679 3.880000e-33 152.0
7 TraesCS6B01G085600 chr6B 92.727 55 4 0 554 608 62155920 62155866 1.860000e-11 80.5
8 TraesCS6B01G085600 chr6B 90.476 42 2 1 1779 1818 124156434 124156393 1.000000e-03 54.7
9 TraesCS6B01G085600 chr6D 87.891 512 49 8 986 1489 28628509 28629015 6.940000e-165 590.0
10 TraesCS6B01G085600 chr6D 86.449 428 28 12 547 951 28627984 28628404 2.060000e-120 442.0
11 TraesCS6B01G085600 chr6D 83.629 507 41 18 989 1490 28634628 28635097 2.660000e-119 438.0
12 TraesCS6B01G085600 chr6D 90.323 155 13 1 1644 1798 28629087 28629239 3.800000e-48 202.0
13 TraesCS6B01G085600 chr6D 88.667 150 12 3 2077 2221 28629359 28629508 6.400000e-41 178.0
14 TraesCS6B01G085600 chr6D 81.651 218 23 8 729 929 28634271 28634488 4.980000e-37 165.0
15 TraesCS6B01G085600 chr6D 91.579 95 7 1 1547 1641 45410945 45411038 1.820000e-26 130.0
16 TraesCS6B01G085600 chr6D 94.828 58 1 1 1644 1701 28635164 28635219 3.080000e-14 89.8
17 TraesCS6B01G085600 chr6A 90.511 411 20 9 559 954 34071761 34071355 1.980000e-145 525.0
18 TraesCS6B01G085600 chr6A 83.104 509 48 19 988 1490 34039601 34039125 1.600000e-116 429.0
19 TraesCS6B01G085600 chr6A 82.975 511 35 15 989 1489 34071259 34070791 4.480000e-112 414.0
20 TraesCS6B01G085600 chr6A 88.439 173 18 2 2079 2249 34069257 34069085 8.160000e-50 207.0
21 TraesCS6B01G085600 chr6A 85.632 174 14 6 1648 1817 34069550 34069384 2.980000e-39 172.0
22 TraesCS6B01G085600 chr6A 89.899 99 4 3 1646 1744 34039054 34038962 3.040000e-24 122.0
23 TraesCS6B01G085600 chr6A 85.039 127 9 4 730 846 34039929 34039803 1.090000e-23 121.0
24 TraesCS6B01G085600 chr3B 85.556 270 34 2 208 476 206273082 206273347 6.130000e-71 278.0
25 TraesCS6B01G085600 chr3B 84.420 276 37 4 206 479 758925790 758926061 1.330000e-67 267.0
26 TraesCS6B01G085600 chr3B 83.744 203 23 8 1 197 666525035 666524837 1.380000e-42 183.0
27 TraesCS6B01G085600 chr3B 81.604 212 22 10 1 197 746327841 746327632 2.320000e-35 159.0
28 TraesCS6B01G085600 chr3B 80.569 211 25 7 2 197 792633337 792633128 5.020000e-32 148.0
29 TraesCS6B01G085600 chr3B 79.208 202 34 7 1 197 792685822 792685624 1.410000e-27 134.0
30 TraesCS6B01G085600 chr3A 85.768 267 33 2 207 472 12408997 12408735 6.130000e-71 278.0
31 TraesCS6B01G085600 chr3A 88.679 106 9 3 1545 1647 621223844 621223739 2.350000e-25 126.0
32 TraesCS6B01G085600 chr3A 96.970 33 1 0 1779 1811 527824027 527823995 3.130000e-04 56.5
33 TraesCS6B01G085600 chr1D 85.714 266 33 2 208 472 408713681 408713942 2.210000e-70 276.0
34 TraesCS6B01G085600 chr1D 85.240 271 35 2 206 475 401204837 401204571 7.930000e-70 274.0
35 TraesCS6B01G085600 chr1D 89.899 99 6 4 1543 1641 7883580 7883674 8.460000e-25 124.0
36 TraesCS6B01G085600 chr2D 85.294 272 33 6 208 477 322363637 322363371 7.930000e-70 274.0
37 TraesCS6B01G085600 chr3D 85.185 270 35 4 204 472 87391732 87391997 2.850000e-69 272.0
38 TraesCS6B01G085600 chr3D 91.837 98 6 2 1544 1641 574388401 574388496 3.910000e-28 135.0
39 TraesCS6B01G085600 chr3D 90.816 98 5 4 1544 1641 558746872 558746779 6.540000e-26 128.0
40 TraesCS6B01G085600 chr1B 84.871 271 36 2 208 477 505094475 505094209 3.690000e-68 268.0
41 TraesCS6B01G085600 chr1B 84.906 212 17 7 1 197 605917654 605917443 1.370000e-47 200.0
42 TraesCS6B01G085600 chr1B 83.251 203 25 8 1 197 534757941 534758140 6.400000e-41 178.0
43 TraesCS6B01G085600 chr1B 81.000 200 29 7 4 197 1515111 1515307 1.400000e-32 150.0
44 TraesCS6B01G085600 chr5D 82.090 201 27 9 1 197 410448113 410448308 1.790000e-36 163.0
45 TraesCS6B01G085600 chr5D 89.000 100 10 1 1542 1641 34885039 34885137 3.040000e-24 122.0
46 TraesCS6B01G085600 chrUn 81.604 212 22 8 1 197 23143770 23143561 2.320000e-35 159.0
47 TraesCS6B01G085600 chrUn 80.095 211 26 7 2 197 41792796 41792587 2.330000e-30 143.0
48 TraesCS6B01G085600 chr2B 81.132 212 23 8 1 197 759682217 759682426 1.080000e-33 154.0
49 TraesCS6B01G085600 chr2B 80.921 152 21 7 1 147 71390703 71390555 1.830000e-21 113.0
50 TraesCS6B01G085600 chr2B 80.795 151 21 7 1 146 71392890 71392743 6.580000e-21 111.0
51 TraesCS6B01G085600 chr2B 94.444 36 2 0 1779 1814 796557596 796557631 3.130000e-04 56.5
52 TraesCS6B01G085600 chr4B 93.750 96 4 2 1548 1641 3849034 3849129 2.330000e-30 143.0
53 TraesCS6B01G085600 chr4B 100.000 32 0 0 1779 1810 96939727 96939696 2.420000e-05 60.2
54 TraesCS6B01G085600 chr7B 79.907 214 26 7 1 199 190793426 190793637 8.400000e-30 141.0
55 TraesCS6B01G085600 chr7B 92.000 100 5 3 1543 1641 267256271 267256174 1.090000e-28 137.0
56 TraesCS6B01G085600 chr7B 79.717 212 26 8 1 197 688155191 688155400 1.090000e-28 137.0
57 TraesCS6B01G085600 chr7B 92.308 65 4 1 4 67 29515863 29515799 8.580000e-15 91.6
58 TraesCS6B01G085600 chr7A 94.253 87 3 2 1555 1641 275967917 275967833 5.050000e-27 132.0
59 TraesCS6B01G085600 chr5B 92.647 68 4 1 1 67 712849190 712849257 1.840000e-16 97.1
60 TraesCS6B01G085600 chr2A 100.000 29 0 0 1779 1807 277544775 277544803 1.000000e-03 54.7
61 TraesCS6B01G085600 chr2A 92.105 38 3 0 1779 1816 503802586 503802549 1.000000e-03 54.7
62 TraesCS6B01G085600 chr2A 90.476 42 2 1 1779 1818 760386341 760386300 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G085600 chr6B 62177776 62180030 2254 True 4165.000000 4165 100.000000 1 2255 1 chr6B.!!$R1 2254
1 TraesCS6B01G085600 chr6B 62212679 62213913 1234 True 670.000000 1188 87.337000 474 1783 2 chr6B.!!$R5 1309
2 TraesCS6B01G085600 chr6B 62154422 62155920 1498 True 337.750000 595 90.481000 554 1489 2 chr6B.!!$R4 935
3 TraesCS6B01G085600 chr6B 62146097 62146744 647 True 246.000000 292 84.665000 729 1299 2 chr6B.!!$R3 570
4 TraesCS6B01G085600 chr6D 28627984 28629508 1524 False 353.000000 590 88.332500 547 2221 4 chr6D.!!$F2 1674
5 TraesCS6B01G085600 chr6D 28634271 28635219 948 False 230.933333 438 86.702667 729 1701 3 chr6D.!!$F3 972
6 TraesCS6B01G085600 chr6A 34069085 34071761 2676 True 329.500000 525 86.889250 559 2249 4 chr6A.!!$R2 1690
7 TraesCS6B01G085600 chr6A 34038962 34039929 967 True 224.000000 429 86.014000 730 1744 3 chr6A.!!$R1 1014

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.03467 GCTCACCCCAGATTGCTCTT 60.035 55.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 2353 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.0 0.0 0.0 41.75 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.660552 CCGAACCGCGCCGAATAT 60.661 61.111 13.76 0.00 39.11 1.28
18 19 2.544359 CGAACCGCGCCGAATATG 59.456 61.111 0.00 0.00 0.00 1.78
19 20 2.935955 GAACCGCGCCGAATATGG 59.064 61.111 0.00 0.00 0.00 2.74
20 21 2.590575 AACCGCGCCGAATATGGG 60.591 61.111 0.00 0.00 0.00 4.00
30 31 1.800586 CCGAATATGGGCTGATTCACG 59.199 52.381 0.00 0.00 32.58 4.35
31 32 1.195448 CGAATATGGGCTGATTCACGC 59.805 52.381 7.14 1.01 32.58 5.34
32 33 2.221169 GAATATGGGCTGATTCACGCA 58.779 47.619 9.34 8.60 33.16 5.24
33 34 1.888215 ATATGGGCTGATTCACGCAG 58.112 50.000 9.34 0.00 36.47 5.18
34 35 0.829990 TATGGGCTGATTCACGCAGA 59.170 50.000 0.00 4.37 35.39 4.26
35 36 0.182061 ATGGGCTGATTCACGCAGAT 59.818 50.000 0.00 0.56 35.39 2.90
36 37 0.829990 TGGGCTGATTCACGCAGATA 59.170 50.000 0.00 0.00 35.39 1.98
37 38 1.417517 TGGGCTGATTCACGCAGATAT 59.582 47.619 0.00 0.00 35.39 1.63
38 39 2.072298 GGGCTGATTCACGCAGATATC 58.928 52.381 0.00 0.00 35.39 1.63
39 40 1.723542 GGCTGATTCACGCAGATATCG 59.276 52.381 0.00 0.00 35.39 2.92
40 41 2.608016 GGCTGATTCACGCAGATATCGA 60.608 50.000 0.00 0.00 35.39 3.59
41 42 2.660715 GCTGATTCACGCAGATATCGAG 59.339 50.000 0.00 0.00 35.39 4.04
42 43 2.660715 CTGATTCACGCAGATATCGAGC 59.339 50.000 11.71 11.71 35.39 5.03
43 44 1.989165 GATTCACGCAGATATCGAGCC 59.011 52.381 14.81 0.32 0.00 4.70
44 45 1.032794 TTCACGCAGATATCGAGCCT 58.967 50.000 14.81 3.99 0.00 4.58
45 46 1.032794 TCACGCAGATATCGAGCCTT 58.967 50.000 14.81 3.00 0.00 4.35
46 47 1.409064 TCACGCAGATATCGAGCCTTT 59.591 47.619 14.81 1.00 0.00 3.11
47 48 2.159099 TCACGCAGATATCGAGCCTTTT 60.159 45.455 14.81 0.00 0.00 2.27
48 49 2.609459 CACGCAGATATCGAGCCTTTTT 59.391 45.455 14.81 0.00 0.00 1.94
49 50 2.609459 ACGCAGATATCGAGCCTTTTTG 59.391 45.455 14.81 5.30 0.00 2.44
50 51 2.032549 CGCAGATATCGAGCCTTTTTGG 60.033 50.000 14.81 0.00 39.35 3.28
51 52 3.206150 GCAGATATCGAGCCTTTTTGGA 58.794 45.455 10.90 0.00 38.35 3.53
52 53 3.002759 GCAGATATCGAGCCTTTTTGGAC 59.997 47.826 10.90 0.00 38.35 4.02
53 54 4.191544 CAGATATCGAGCCTTTTTGGACA 58.808 43.478 0.00 0.00 38.35 4.02
54 55 4.818546 CAGATATCGAGCCTTTTTGGACAT 59.181 41.667 0.00 0.00 38.35 3.06
55 56 5.991606 CAGATATCGAGCCTTTTTGGACATA 59.008 40.000 0.00 0.00 38.35 2.29
56 57 6.483307 CAGATATCGAGCCTTTTTGGACATAA 59.517 38.462 0.00 0.00 38.35 1.90
57 58 7.173907 CAGATATCGAGCCTTTTTGGACATAAT 59.826 37.037 0.00 0.00 38.35 1.28
58 59 7.721399 AGATATCGAGCCTTTTTGGACATAATT 59.279 33.333 0.00 0.00 38.35 1.40
59 60 5.309323 TCGAGCCTTTTTGGACATAATTG 57.691 39.130 0.00 0.00 38.35 2.32
60 61 4.157656 TCGAGCCTTTTTGGACATAATTGG 59.842 41.667 0.00 0.00 38.35 3.16
61 62 4.677779 CGAGCCTTTTTGGACATAATTGGG 60.678 45.833 0.00 0.00 38.35 4.12
62 63 3.055167 AGCCTTTTTGGACATAATTGGGC 60.055 43.478 0.00 0.00 38.35 5.36
63 64 3.872696 CCTTTTTGGACATAATTGGGCC 58.127 45.455 0.00 0.00 38.35 5.80
64 65 3.520569 CTTTTTGGACATAATTGGGCCG 58.479 45.455 0.00 0.00 0.00 6.13
65 66 2.516227 TTTGGACATAATTGGGCCGA 57.484 45.000 0.00 0.00 0.00 5.54
66 67 2.516227 TTGGACATAATTGGGCCGAA 57.484 45.000 1.41 1.41 0.00 4.30
67 68 2.516227 TGGACATAATTGGGCCGAAA 57.484 45.000 3.59 0.00 0.00 3.46
68 69 3.025322 TGGACATAATTGGGCCGAAAT 57.975 42.857 3.59 0.00 0.00 2.17
69 70 4.171878 TGGACATAATTGGGCCGAAATA 57.828 40.909 3.59 0.00 0.00 1.40
70 71 4.141287 TGGACATAATTGGGCCGAAATAG 58.859 43.478 3.59 0.00 0.00 1.73
71 72 3.506067 GGACATAATTGGGCCGAAATAGG 59.494 47.826 3.59 4.88 0.00 2.57
79 80 4.033894 CCGAAATAGGCGCTGGAG 57.966 61.111 7.64 0.00 0.00 3.86
80 81 1.595382 CCGAAATAGGCGCTGGAGG 60.595 63.158 7.64 0.00 0.00 4.30
81 82 2.247437 CGAAATAGGCGCTGGAGGC 61.247 63.158 7.64 0.00 37.64 4.70
85 86 2.043349 TAGGCGCTGGAGGCTACA 60.043 61.111 7.64 0.00 45.66 2.74
86 87 1.457643 TAGGCGCTGGAGGCTACAT 60.458 57.895 7.64 0.00 45.66 2.29
87 88 1.748329 TAGGCGCTGGAGGCTACATG 61.748 60.000 7.64 0.00 45.66 3.21
88 89 2.590007 GCGCTGGAGGCTACATGG 60.590 66.667 0.00 0.00 39.13 3.66
89 90 2.109799 CGCTGGAGGCTACATGGG 59.890 66.667 0.00 0.00 39.13 4.00
90 91 2.512896 GCTGGAGGCTACATGGGG 59.487 66.667 0.00 0.00 38.06 4.96
91 92 3.125376 GCTGGAGGCTACATGGGGG 62.125 68.421 0.00 0.00 38.06 5.40
141 142 3.614143 CGAGTTTATCGCCGGCTC 58.386 61.111 26.68 12.39 45.98 4.70
142 143 1.226859 CGAGTTTATCGCCGGCTCA 60.227 57.895 26.68 11.65 45.98 4.26
143 144 1.480219 CGAGTTTATCGCCGGCTCAC 61.480 60.000 26.68 13.13 45.98 3.51
144 145 1.152383 GAGTTTATCGCCGGCTCACC 61.152 60.000 26.68 7.23 0.00 4.02
145 146 2.178235 GTTTATCGCCGGCTCACCC 61.178 63.158 26.68 3.86 0.00 4.61
146 147 3.394635 TTTATCGCCGGCTCACCCC 62.395 63.158 26.68 0.00 0.00 4.95
151 152 4.115199 GCCGGCTCACCCCAGATT 62.115 66.667 22.15 0.00 0.00 2.40
152 153 2.124570 CCGGCTCACCCCAGATTG 60.125 66.667 0.00 0.00 0.00 2.67
153 154 2.825836 CGGCTCACCCCAGATTGC 60.826 66.667 0.00 0.00 0.00 3.56
154 155 2.679716 GGCTCACCCCAGATTGCT 59.320 61.111 0.00 0.00 0.00 3.91
155 156 1.452833 GGCTCACCCCAGATTGCTC 60.453 63.158 0.00 0.00 0.00 4.26
156 157 1.606531 GCTCACCCCAGATTGCTCT 59.393 57.895 0.00 0.00 0.00 4.09
157 158 0.034670 GCTCACCCCAGATTGCTCTT 60.035 55.000 0.00 0.00 0.00 2.85
158 159 1.615384 GCTCACCCCAGATTGCTCTTT 60.615 52.381 0.00 0.00 0.00 2.52
159 160 2.800250 CTCACCCCAGATTGCTCTTTT 58.200 47.619 0.00 0.00 0.00 2.27
160 161 3.160269 CTCACCCCAGATTGCTCTTTTT 58.840 45.455 0.00 0.00 0.00 1.94
161 162 3.157087 TCACCCCAGATTGCTCTTTTTC 58.843 45.455 0.00 0.00 0.00 2.29
162 163 2.095059 CACCCCAGATTGCTCTTTTTCG 60.095 50.000 0.00 0.00 0.00 3.46
163 164 2.224769 ACCCCAGATTGCTCTTTTTCGA 60.225 45.455 0.00 0.00 0.00 3.71
164 165 2.162408 CCCCAGATTGCTCTTTTTCGAC 59.838 50.000 0.00 0.00 0.00 4.20
165 166 2.159653 CCCAGATTGCTCTTTTTCGACG 60.160 50.000 0.00 0.00 0.00 5.12
166 167 2.499896 CAGATTGCTCTTTTTCGACGC 58.500 47.619 0.00 0.00 0.00 5.19
167 168 1.464997 AGATTGCTCTTTTTCGACGCC 59.535 47.619 0.00 0.00 0.00 5.68
168 169 0.521735 ATTGCTCTTTTTCGACGCCC 59.478 50.000 0.00 0.00 0.00 6.13
169 170 0.534203 TTGCTCTTTTTCGACGCCCT 60.534 50.000 0.00 0.00 0.00 5.19
170 171 1.227999 TGCTCTTTTTCGACGCCCTG 61.228 55.000 0.00 0.00 0.00 4.45
171 172 1.497722 CTCTTTTTCGACGCCCTGC 59.502 57.895 0.00 0.00 0.00 4.85
172 173 1.227704 TCTTTTTCGACGCCCTGCA 60.228 52.632 0.00 0.00 0.00 4.41
173 174 1.207593 CTTTTTCGACGCCCTGCAG 59.792 57.895 6.78 6.78 0.00 4.41
174 175 2.187599 CTTTTTCGACGCCCTGCAGG 62.188 60.000 26.87 26.87 39.47 4.85
175 176 2.668185 TTTTTCGACGCCCTGCAGGA 62.668 55.000 34.91 10.26 38.24 3.86
176 177 3.876589 TTTCGACGCCCTGCAGGAC 62.877 63.158 34.91 22.99 38.24 3.85
179 180 4.329545 GACGCCCTGCAGGACCAA 62.330 66.667 34.91 0.00 38.24 3.67
180 181 3.842925 GACGCCCTGCAGGACCAAA 62.843 63.158 34.91 0.00 38.24 3.28
181 182 3.365265 CGCCCTGCAGGACCAAAC 61.365 66.667 34.91 14.05 38.24 2.93
182 183 3.365265 GCCCTGCAGGACCAAACG 61.365 66.667 34.91 16.23 38.24 3.60
183 184 2.672996 CCCTGCAGGACCAAACGG 60.673 66.667 34.91 10.80 38.24 4.44
184 185 3.365265 CCTGCAGGACCAAACGGC 61.365 66.667 29.88 0.00 37.39 5.68
185 186 2.281761 CTGCAGGACCAAACGGCT 60.282 61.111 5.57 0.00 0.00 5.52
186 187 2.594303 TGCAGGACCAAACGGCTG 60.594 61.111 0.00 0.00 0.00 4.85
187 188 3.365265 GCAGGACCAAACGGCTGG 61.365 66.667 0.00 3.64 42.68 4.85
188 189 2.429930 CAGGACCAAACGGCTGGA 59.570 61.111 11.64 0.00 38.96 3.86
189 190 1.672356 CAGGACCAAACGGCTGGAG 60.672 63.158 11.64 0.00 38.96 3.86
190 191 1.841556 AGGACCAAACGGCTGGAGA 60.842 57.895 11.64 0.00 38.96 3.71
191 192 1.201429 AGGACCAAACGGCTGGAGAT 61.201 55.000 11.64 0.00 38.96 2.75
192 193 1.026718 GGACCAAACGGCTGGAGATG 61.027 60.000 11.64 0.00 38.96 2.90
193 194 1.648467 GACCAAACGGCTGGAGATGC 61.648 60.000 11.64 0.00 38.96 3.91
194 195 1.377725 CCAAACGGCTGGAGATGCT 60.378 57.895 0.00 0.00 38.96 3.79
195 196 1.372087 CCAAACGGCTGGAGATGCTC 61.372 60.000 0.00 0.00 38.96 4.26
196 197 0.392193 CAAACGGCTGGAGATGCTCT 60.392 55.000 0.00 0.00 0.00 4.09
197 198 0.392193 AAACGGCTGGAGATGCTCTG 60.392 55.000 0.00 0.00 0.00 3.35
198 199 1.260538 AACGGCTGGAGATGCTCTGA 61.261 55.000 0.00 0.00 0.00 3.27
199 200 1.047596 ACGGCTGGAGATGCTCTGAT 61.048 55.000 0.00 0.00 0.00 2.90
200 201 0.106335 CGGCTGGAGATGCTCTGATT 59.894 55.000 0.00 0.00 0.00 2.57
201 202 1.342496 CGGCTGGAGATGCTCTGATTA 59.658 52.381 0.00 0.00 0.00 1.75
202 203 2.224137 CGGCTGGAGATGCTCTGATTAA 60.224 50.000 0.00 0.00 0.00 1.40
203 204 3.401182 GGCTGGAGATGCTCTGATTAAG 58.599 50.000 0.00 0.00 0.00 1.85
204 205 3.401182 GCTGGAGATGCTCTGATTAAGG 58.599 50.000 0.00 0.00 0.00 2.69
205 206 3.181456 GCTGGAGATGCTCTGATTAAGGT 60.181 47.826 0.00 0.00 0.00 3.50
206 207 4.378774 CTGGAGATGCTCTGATTAAGGTG 58.621 47.826 0.00 0.00 0.00 4.00
207 208 3.776969 TGGAGATGCTCTGATTAAGGTGT 59.223 43.478 0.00 0.00 0.00 4.16
208 209 4.962362 TGGAGATGCTCTGATTAAGGTGTA 59.038 41.667 0.00 0.00 0.00 2.90
209 210 5.163405 TGGAGATGCTCTGATTAAGGTGTAC 60.163 44.000 0.00 0.00 0.00 2.90
210 211 5.069781 GGAGATGCTCTGATTAAGGTGTACT 59.930 44.000 0.00 0.00 0.00 2.73
211 212 6.155475 AGATGCTCTGATTAAGGTGTACTC 57.845 41.667 0.00 0.00 0.00 2.59
212 213 4.737855 TGCTCTGATTAAGGTGTACTCC 57.262 45.455 5.81 5.81 0.00 3.85
213 214 3.451178 TGCTCTGATTAAGGTGTACTCCC 59.549 47.826 10.36 2.27 0.00 4.30
214 215 3.707102 GCTCTGATTAAGGTGTACTCCCT 59.293 47.826 10.36 4.67 0.00 4.20
215 216 4.202172 GCTCTGATTAAGGTGTACTCCCTC 60.202 50.000 10.36 3.96 0.00 4.30
216 217 5.205056 CTCTGATTAAGGTGTACTCCCTCT 58.795 45.833 10.36 0.00 0.00 3.69
217 218 4.956700 TCTGATTAAGGTGTACTCCCTCTG 59.043 45.833 10.36 7.03 0.00 3.35
218 219 4.684724 TGATTAAGGTGTACTCCCTCTGT 58.315 43.478 10.36 0.00 0.00 3.41
219 220 4.710375 TGATTAAGGTGTACTCCCTCTGTC 59.290 45.833 10.36 6.91 0.00 3.51
220 221 1.939980 AAGGTGTACTCCCTCTGTCC 58.060 55.000 10.36 0.00 0.00 4.02
221 222 1.085715 AGGTGTACTCCCTCTGTCCT 58.914 55.000 10.36 0.00 0.00 3.85
222 223 1.433592 AGGTGTACTCCCTCTGTCCTT 59.566 52.381 10.36 0.00 0.00 3.36
223 224 1.550976 GGTGTACTCCCTCTGTCCTTG 59.449 57.143 2.33 0.00 0.00 3.61
224 225 2.526432 GTGTACTCCCTCTGTCCTTGA 58.474 52.381 0.00 0.00 0.00 3.02
225 226 2.897969 GTGTACTCCCTCTGTCCTTGAA 59.102 50.000 0.00 0.00 0.00 2.69
226 227 3.323979 GTGTACTCCCTCTGTCCTTGAAA 59.676 47.826 0.00 0.00 0.00 2.69
227 228 3.971305 TGTACTCCCTCTGTCCTTGAAAA 59.029 43.478 0.00 0.00 0.00 2.29
228 229 4.410883 TGTACTCCCTCTGTCCTTGAAAAA 59.589 41.667 0.00 0.00 0.00 1.94
229 230 4.092116 ACTCCCTCTGTCCTTGAAAAAG 57.908 45.455 0.00 0.00 0.00 2.27
230 231 3.459969 ACTCCCTCTGTCCTTGAAAAAGT 59.540 43.478 0.00 0.00 0.00 2.66
231 232 4.658901 ACTCCCTCTGTCCTTGAAAAAGTA 59.341 41.667 0.00 0.00 0.00 2.24
232 233 4.969484 TCCCTCTGTCCTTGAAAAAGTAC 58.031 43.478 0.00 0.00 0.00 2.73
233 234 4.410883 TCCCTCTGTCCTTGAAAAAGTACA 59.589 41.667 0.00 0.00 0.00 2.90
234 235 4.515567 CCCTCTGTCCTTGAAAAAGTACAC 59.484 45.833 0.00 0.00 0.00 2.90
235 236 5.368989 CCTCTGTCCTTGAAAAAGTACACT 58.631 41.667 0.00 0.00 0.00 3.55
236 237 5.823045 CCTCTGTCCTTGAAAAAGTACACTT 59.177 40.000 0.00 0.00 37.91 3.16
237 238 6.017852 CCTCTGTCCTTGAAAAAGTACACTTC 60.018 42.308 0.00 0.00 34.61 3.01
238 239 5.820947 TCTGTCCTTGAAAAAGTACACTTCC 59.179 40.000 0.00 0.00 34.61 3.46
239 240 5.502079 TGTCCTTGAAAAAGTACACTTCCA 58.498 37.500 0.00 0.00 34.61 3.53
240 241 5.946972 TGTCCTTGAAAAAGTACACTTCCAA 59.053 36.000 0.00 0.98 34.61 3.53
241 242 6.127842 TGTCCTTGAAAAAGTACACTTCCAAC 60.128 38.462 0.00 0.00 34.61 3.77
242 243 6.095021 GTCCTTGAAAAAGTACACTTCCAACT 59.905 38.462 0.00 0.00 34.61 3.16
243 244 6.661805 TCCTTGAAAAAGTACACTTCCAACTT 59.338 34.615 0.00 0.00 34.61 2.66
244 245 7.177744 TCCTTGAAAAAGTACACTTCCAACTTT 59.822 33.333 0.00 0.00 43.43 2.66
245 246 7.275560 CCTTGAAAAAGTACACTTCCAACTTTG 59.724 37.037 0.00 0.00 41.36 2.77
246 247 7.222000 TGAAAAAGTACACTTCCAACTTTGT 57.778 32.000 0.00 0.00 41.36 2.83
247 248 7.662897 TGAAAAAGTACACTTCCAACTTTGTT 58.337 30.769 0.00 0.00 41.36 2.83
248 249 7.596995 TGAAAAAGTACACTTCCAACTTTGTTG 59.403 33.333 0.00 3.69 41.36 3.33
249 250 5.576447 AAGTACACTTCCAACTTTGTTGG 57.424 39.130 19.97 19.97 40.87 3.77
250 251 4.850680 AGTACACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
255 256 2.358322 TCCAACTTTGTTGGAGGGTC 57.642 50.000 23.38 0.00 43.17 4.46
256 257 1.566703 TCCAACTTTGTTGGAGGGTCA 59.433 47.619 23.38 5.39 43.17 4.02
257 258 2.024846 TCCAACTTTGTTGGAGGGTCAA 60.025 45.455 23.38 4.76 43.17 3.18
258 259 2.763448 CCAACTTTGTTGGAGGGTCAAA 59.237 45.455 21.06 0.00 42.06 2.69
259 260 3.387699 CCAACTTTGTTGGAGGGTCAAAT 59.612 43.478 21.06 0.00 42.06 2.32
260 261 4.141733 CCAACTTTGTTGGAGGGTCAAATT 60.142 41.667 21.06 0.00 42.06 1.82
261 262 5.069781 CCAACTTTGTTGGAGGGTCAAATTA 59.930 40.000 21.06 0.00 42.06 1.40
262 263 6.239572 CCAACTTTGTTGGAGGGTCAAATTAT 60.240 38.462 21.06 0.00 42.06 1.28
263 264 6.590234 ACTTTGTTGGAGGGTCAAATTATC 57.410 37.500 0.00 0.00 32.04 1.75
264 265 6.074648 ACTTTGTTGGAGGGTCAAATTATCA 58.925 36.000 0.00 0.00 32.04 2.15
265 266 5.975693 TTGTTGGAGGGTCAAATTATCAC 57.024 39.130 0.00 0.00 0.00 3.06
266 267 4.991776 TGTTGGAGGGTCAAATTATCACA 58.008 39.130 0.00 0.00 0.00 3.58
267 268 5.389520 TGTTGGAGGGTCAAATTATCACAA 58.610 37.500 0.00 0.00 0.00 3.33
268 269 5.835819 TGTTGGAGGGTCAAATTATCACAAA 59.164 36.000 0.00 0.00 0.00 2.83
269 270 6.015519 TGTTGGAGGGTCAAATTATCACAAAG 60.016 38.462 0.00 0.00 0.00 2.77
270 271 5.640147 TGGAGGGTCAAATTATCACAAAGT 58.360 37.500 0.00 0.00 0.00 2.66
271 272 6.074648 TGGAGGGTCAAATTATCACAAAGTT 58.925 36.000 0.00 0.00 0.00 2.66
272 273 6.553100 TGGAGGGTCAAATTATCACAAAGTTT 59.447 34.615 0.00 0.00 0.00 2.66
273 274 7.726291 TGGAGGGTCAAATTATCACAAAGTTTA 59.274 33.333 0.00 0.00 0.00 2.01
274 275 8.581578 GGAGGGTCAAATTATCACAAAGTTTAA 58.418 33.333 0.00 0.00 0.00 1.52
275 276 9.406828 GAGGGTCAAATTATCACAAAGTTTAAC 57.593 33.333 0.00 0.00 0.00 2.01
276 277 8.364894 AGGGTCAAATTATCACAAAGTTTAACC 58.635 33.333 0.00 0.00 0.00 2.85
277 278 7.327518 GGGTCAAATTATCACAAAGTTTAACCG 59.672 37.037 0.00 0.00 0.00 4.44
278 279 8.077386 GGTCAAATTATCACAAAGTTTAACCGA 58.923 33.333 0.00 0.00 0.00 4.69
279 280 9.113876 GTCAAATTATCACAAAGTTTAACCGAG 57.886 33.333 0.00 0.00 0.00 4.63
280 281 8.842280 TCAAATTATCACAAAGTTTAACCGAGT 58.158 29.630 0.00 0.00 0.00 4.18
281 282 9.458374 CAAATTATCACAAAGTTTAACCGAGTT 57.542 29.630 0.00 0.00 0.00 3.01
283 284 9.458374 AATTATCACAAAGTTTAACCGAGTTTG 57.542 29.630 6.15 6.15 41.16 2.93
284 285 5.883503 TCACAAAGTTTAACCGAGTTTGT 57.116 34.783 7.17 7.17 46.23 2.83
286 287 4.417506 ACAAAGTTTAACCGAGTTTGTGC 58.582 39.130 10.83 0.00 44.59 4.57
287 288 4.082679 ACAAAGTTTAACCGAGTTTGTGCA 60.083 37.500 10.83 0.00 44.59 4.57
288 289 4.705337 AAGTTTAACCGAGTTTGTGCAA 57.295 36.364 0.00 0.00 0.00 4.08
289 290 4.705337 AGTTTAACCGAGTTTGTGCAAA 57.295 36.364 0.00 0.00 0.00 3.68
290 291 5.061920 AGTTTAACCGAGTTTGTGCAAAA 57.938 34.783 0.00 0.00 31.33 2.44
291 292 5.471257 AGTTTAACCGAGTTTGTGCAAAAA 58.529 33.333 0.00 0.00 31.33 1.94
292 293 6.103330 AGTTTAACCGAGTTTGTGCAAAAAT 58.897 32.000 5.11 0.00 31.33 1.82
293 294 7.259161 AGTTTAACCGAGTTTGTGCAAAAATA 58.741 30.769 5.11 0.00 31.33 1.40
294 295 7.923878 AGTTTAACCGAGTTTGTGCAAAAATAT 59.076 29.630 5.11 0.00 31.33 1.28
295 296 9.182933 GTTTAACCGAGTTTGTGCAAAAATATA 57.817 29.630 5.11 0.00 31.33 0.86
296 297 9.915629 TTTAACCGAGTTTGTGCAAAAATATAT 57.084 25.926 5.11 0.00 31.33 0.86
297 298 9.562583 TTAACCGAGTTTGTGCAAAAATATATC 57.437 29.630 5.11 1.66 31.33 1.63
298 299 7.151999 ACCGAGTTTGTGCAAAAATATATCA 57.848 32.000 5.11 0.00 31.33 2.15
299 300 7.598278 ACCGAGTTTGTGCAAAAATATATCAA 58.402 30.769 5.11 0.00 31.33 2.57
300 301 8.250332 ACCGAGTTTGTGCAAAAATATATCAAT 58.750 29.630 5.11 0.00 31.33 2.57
301 302 8.533965 CCGAGTTTGTGCAAAAATATATCAATG 58.466 33.333 5.11 0.00 31.33 2.82
302 303 9.075519 CGAGTTTGTGCAAAAATATATCAATGT 57.924 29.630 5.11 0.00 31.33 2.71
308 309 9.702494 TGTGCAAAAATATATCAATGTTTGTGA 57.298 25.926 0.00 0.00 34.81 3.58
393 394 9.995003 ATGGTATAAATGTTGATGTTTTGTTGT 57.005 25.926 0.00 0.00 0.00 3.32
469 470 8.561738 AAATACACACTTTTATGTACAGAGGG 57.438 34.615 0.33 0.51 34.24 4.30
470 471 5.818678 ACACACTTTTATGTACAGAGGGA 57.181 39.130 0.33 0.00 0.00 4.20
471 472 5.794894 ACACACTTTTATGTACAGAGGGAG 58.205 41.667 0.33 0.00 0.00 4.30
472 473 4.631813 CACACTTTTATGTACAGAGGGAGC 59.368 45.833 0.33 0.00 0.00 4.70
479 480 1.381191 TACAGAGGGAGCATGCGGA 60.381 57.895 13.01 0.00 0.00 5.54
487 488 0.392461 GGAGCATGCGGACTACCAAA 60.392 55.000 13.01 0.00 35.59 3.28
491 492 1.518325 CATGCGGACTACCAAACACA 58.482 50.000 0.00 0.00 35.59 3.72
492 493 2.083774 CATGCGGACTACCAAACACAT 58.916 47.619 0.00 0.00 35.59 3.21
495 496 1.609580 GCGGACTACCAAACACATCCA 60.610 52.381 0.00 0.00 35.59 3.41
497 498 3.680475 GCGGACTACCAAACACATCCATA 60.680 47.826 0.00 0.00 35.59 2.74
504 505 5.179452 ACCAAACACATCCATAGCTAACT 57.821 39.130 0.00 0.00 0.00 2.24
518 519 1.937359 CTAACTTGTGCGCGACTTTG 58.063 50.000 12.10 0.00 0.00 2.77
531 532 1.429463 GACTTTGTTCGCCAGATCGT 58.571 50.000 0.00 0.00 0.00 3.73
557 562 0.861837 CAGCTCACAACTCCACGTTC 59.138 55.000 0.00 0.00 32.27 3.95
641 650 4.607955 TCATGAGATCGACGGTCAATAAC 58.392 43.478 11.33 0.00 0.00 1.89
745 783 1.415374 CTTGGTCTTGTACGTCACGG 58.585 55.000 0.35 0.00 0.00 4.94
858 923 4.903010 TAATCTTCCCGCCGCGCC 62.903 66.667 7.42 0.00 0.00 6.53
925 1495 0.320771 CTCAACTCAACCCTCCCACG 60.321 60.000 0.00 0.00 0.00 4.94
1014 1686 2.507471 GTCCATGATGGGAGGAGACTTT 59.493 50.000 12.26 0.00 37.19 2.66
1081 1753 3.976701 ATGGACCAAGCCGAAGCCG 62.977 63.158 0.00 0.00 41.25 5.52
1149 1824 4.537433 GGCGCCGCTGGAGAGAAT 62.537 66.667 12.58 0.00 0.00 2.40
1160 1835 2.170187 CTGGAGAGAATAAGGCTGCTGT 59.830 50.000 0.00 0.00 0.00 4.40
1268 1958 8.443953 ACTTCCTCTTGATTATATTGCTGTTC 57.556 34.615 0.00 0.00 0.00 3.18
1271 1965 7.795047 TCCTCTTGATTATATTGCTGTTCTGA 58.205 34.615 0.00 0.00 0.00 3.27
1293 1987 0.179043 TGCCACGAAGTTGTAAGCCA 60.179 50.000 0.00 0.00 41.61 4.75
1332 2039 2.036604 GCGCCTTTCTTCTAGCTAGGAT 59.963 50.000 20.58 0.00 0.00 3.24
1334 2041 3.319405 CGCCTTTCTTCTAGCTAGGATCA 59.681 47.826 20.58 0.00 0.00 2.92
1335 2042 4.558496 CGCCTTTCTTCTAGCTAGGATCAG 60.558 50.000 20.58 11.37 0.00 2.90
1337 2056 5.144100 CCTTTCTTCTAGCTAGGATCAGGA 58.856 45.833 20.58 4.51 0.00 3.86
1339 2058 3.761897 TCTTCTAGCTAGGATCAGGAGC 58.238 50.000 20.58 0.00 36.42 4.70
1341 2060 1.173043 CTAGCTAGGATCAGGAGCGG 58.827 60.000 13.32 0.00 41.23 5.52
1346 2065 1.043116 TAGGATCAGGAGCGGGTGTG 61.043 60.000 0.00 0.00 0.00 3.82
1347 2066 2.660064 GGATCAGGAGCGGGTGTGT 61.660 63.158 0.00 0.00 0.00 3.72
1348 2067 1.327690 GGATCAGGAGCGGGTGTGTA 61.328 60.000 0.00 0.00 0.00 2.90
1349 2068 0.103208 GATCAGGAGCGGGTGTGTAG 59.897 60.000 0.00 0.00 0.00 2.74
1358 2077 1.263217 GCGGGTGTGTAGAGTTTGTTG 59.737 52.381 0.00 0.00 0.00 3.33
1380 2103 3.961480 TTCGATCAGCTTCTCTTGGAA 57.039 42.857 0.00 0.00 0.00 3.53
1518 2288 1.146485 TTCCTCGTTCGTTTGGGCA 59.854 52.632 0.00 0.00 0.00 5.36
1523 2293 2.008697 CGTTCGTTTGGGCAAAGCG 61.009 57.895 4.30 4.30 0.00 4.68
1529 2299 1.208259 GTTTGGGCAAAGCGTTTCTG 58.792 50.000 0.00 0.00 0.00 3.02
1532 2302 0.383949 TGGGCAAAGCGTTTCTGTTC 59.616 50.000 0.00 0.00 0.00 3.18
1533 2303 0.383949 GGGCAAAGCGTTTCTGTTCA 59.616 50.000 0.00 0.00 0.00 3.18
1534 2304 1.202359 GGGCAAAGCGTTTCTGTTCAA 60.202 47.619 0.00 0.00 0.00 2.69
1535 2305 2.119457 GGCAAAGCGTTTCTGTTCAAG 58.881 47.619 0.00 0.00 0.00 3.02
1536 2306 1.518515 GCAAAGCGTTTCTGTTCAAGC 59.481 47.619 0.00 0.00 0.00 4.01
1537 2307 2.796304 CAAAGCGTTTCTGTTCAAGCA 58.204 42.857 0.00 0.00 0.00 3.91
1539 2309 2.763249 AGCGTTTCTGTTCAAGCAAG 57.237 45.000 0.00 0.00 0.00 4.01
1540 2310 1.334869 AGCGTTTCTGTTCAAGCAAGG 59.665 47.619 0.00 0.00 0.00 3.61
1541 2311 1.065551 GCGTTTCTGTTCAAGCAAGGT 59.934 47.619 0.00 0.00 0.00 3.50
1542 2312 2.479560 GCGTTTCTGTTCAAGCAAGGTT 60.480 45.455 0.00 0.00 0.00 3.50
1543 2313 3.769536 CGTTTCTGTTCAAGCAAGGTTT 58.230 40.909 0.00 0.00 0.00 3.27
1544 2314 4.173256 CGTTTCTGTTCAAGCAAGGTTTT 58.827 39.130 0.00 0.00 0.00 2.43
1545 2315 4.625311 CGTTTCTGTTCAAGCAAGGTTTTT 59.375 37.500 0.00 0.00 0.00 1.94
1581 2351 4.541973 TTTACGAAAAGAGGGGACTACC 57.458 45.455 0.00 0.00 44.43 3.18
1591 2361 3.851128 GGACTACCCGGCCTCTGC 61.851 72.222 0.00 0.00 0.00 4.26
1592 2362 3.075005 GACTACCCGGCCTCTGCA 61.075 66.667 0.00 0.00 40.13 4.41
1593 2363 2.365635 ACTACCCGGCCTCTGCAT 60.366 61.111 0.00 0.00 40.13 3.96
1595 2365 2.364973 TACCCGGCCTCTGCATCA 60.365 61.111 0.00 0.00 40.13 3.07
1596 2366 2.374830 CTACCCGGCCTCTGCATCAG 62.375 65.000 0.00 0.00 40.13 2.90
1597 2367 2.871795 TACCCGGCCTCTGCATCAGA 62.872 60.000 0.00 0.00 38.25 3.27
1598 2368 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
1599 2369 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
1600 2370 2.169789 CGGCCTCTGCATCAGAACG 61.170 63.158 0.00 0.63 40.18 3.95
1601 2371 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
1602 2372 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
1611 2381 1.193203 CATCAGAACGATGCATACGGC 59.807 52.381 18.34 11.86 44.95 5.68
1614 2384 0.810031 AGAACGATGCATACGGCCAC 60.810 55.000 18.34 9.37 43.89 5.01
1615 2385 1.772063 GAACGATGCATACGGCCACC 61.772 60.000 18.34 0.00 43.89 4.61
1616 2386 2.108976 CGATGCATACGGCCACCT 59.891 61.111 2.24 0.00 43.89 4.00
1617 2387 1.523711 CGATGCATACGGCCACCTT 60.524 57.895 2.24 0.00 43.89 3.50
1618 2388 1.095228 CGATGCATACGGCCACCTTT 61.095 55.000 2.24 0.00 43.89 3.11
1619 2389 1.808512 CGATGCATACGGCCACCTTTA 60.809 52.381 2.24 0.00 43.89 1.85
1620 2390 2.504367 GATGCATACGGCCACCTTTAT 58.496 47.619 2.24 0.00 43.89 1.40
1623 2393 3.887352 TGCATACGGCCACCTTTATAAA 58.113 40.909 2.24 0.00 43.89 1.40
1625 2395 5.622180 TGCATACGGCCACCTTTATAAATA 58.378 37.500 2.24 0.00 43.89 1.40
1626 2396 6.062749 TGCATACGGCCACCTTTATAAATAA 58.937 36.000 2.24 0.00 43.89 1.40
1628 2398 6.608610 CATACGGCCACCTTTATAAATAAGC 58.391 40.000 2.24 0.43 0.00 3.09
1629 2399 4.528920 ACGGCCACCTTTATAAATAAGCA 58.471 39.130 2.24 0.00 0.00 3.91
1633 2403 7.285858 ACGGCCACCTTTATAAATAAGCAAATA 59.714 33.333 2.24 0.00 0.00 1.40
1634 2404 7.807907 CGGCCACCTTTATAAATAAGCAAATAG 59.192 37.037 2.24 0.00 0.00 1.73
1635 2405 8.088365 GGCCACCTTTATAAATAAGCAAATAGG 58.912 37.037 0.00 0.00 0.00 2.57
1636 2406 8.638873 GCCACCTTTATAAATAAGCAAATAGGT 58.361 33.333 0.00 0.00 30.23 3.08
1686 3503 2.560504 CATAAACTGCCCGACTGCATA 58.439 47.619 0.00 0.00 41.16 3.14
1687 3504 3.141398 CATAAACTGCCCGACTGCATAT 58.859 45.455 0.00 0.00 41.16 1.78
1793 3610 3.181511 CGCTCTCTTGTTGTTGTTGTTGA 60.182 43.478 0.00 0.00 0.00 3.18
1795 3612 4.736793 GCTCTCTTGTTGTTGTTGTTGATG 59.263 41.667 0.00 0.00 0.00 3.07
1796 3613 5.449041 GCTCTCTTGTTGTTGTTGTTGATGA 60.449 40.000 0.00 0.00 0.00 2.92
1797 3614 6.698008 TCTCTTGTTGTTGTTGTTGATGAT 57.302 33.333 0.00 0.00 0.00 2.45
1798 3615 6.497437 TCTCTTGTTGTTGTTGTTGATGATG 58.503 36.000 0.00 0.00 0.00 3.07
1799 3616 6.318396 TCTCTTGTTGTTGTTGTTGATGATGA 59.682 34.615 0.00 0.00 0.00 2.92
1800 3617 7.013559 TCTCTTGTTGTTGTTGTTGATGATGAT 59.986 33.333 0.00 0.00 0.00 2.45
1801 3618 6.919115 TCTTGTTGTTGTTGTTGATGATGATG 59.081 34.615 0.00 0.00 0.00 3.07
1802 3619 6.388435 TGTTGTTGTTGTTGATGATGATGA 57.612 33.333 0.00 0.00 0.00 2.92
1803 3620 6.983984 TGTTGTTGTTGTTGATGATGATGAT 58.016 32.000 0.00 0.00 0.00 2.45
1804 3621 6.864165 TGTTGTTGTTGTTGATGATGATGATG 59.136 34.615 0.00 0.00 0.00 3.07
1805 3622 6.821031 TGTTGTTGTTGATGATGATGATGA 57.179 33.333 0.00 0.00 0.00 2.92
1806 3623 7.399245 TGTTGTTGTTGATGATGATGATGAT 57.601 32.000 0.00 0.00 0.00 2.45
1807 3624 7.477494 TGTTGTTGTTGATGATGATGATGATC 58.523 34.615 0.00 0.00 0.00 2.92
1808 3625 7.121463 TGTTGTTGTTGATGATGATGATGATCA 59.879 33.333 0.00 0.00 42.92 2.92
1824 3641 7.046292 TGATGATCATCATTGTTGGAATTCC 57.954 36.000 30.27 18.17 42.42 3.01
1825 3642 6.608002 TGATGATCATCATTGTTGGAATTCCA 59.392 34.615 30.27 23.63 42.42 3.53
1826 3643 6.812998 ATGATCATCATTGTTGGAATTCCAC 58.187 36.000 27.04 20.43 38.85 4.02
1827 3644 6.183360 ATGATCATCATTGTTGGAATTCCACC 60.183 38.462 27.04 20.77 38.85 4.61
1828 3645 9.046107 ATGATCATCATTGTTGGAATTCCACCC 62.046 40.741 27.04 19.55 38.85 4.61
1838 3655 5.993748 TGGAATTCCACCCTCAATTTAAC 57.006 39.130 23.63 0.00 42.01 2.01
1839 3656 4.461081 TGGAATTCCACCCTCAATTTAACG 59.539 41.667 23.63 0.00 42.01 3.18
1840 3657 4.703093 GGAATTCCACCCTCAATTTAACGA 59.297 41.667 20.04 0.00 35.64 3.85
1841 3658 5.359860 GGAATTCCACCCTCAATTTAACGAT 59.640 40.000 20.04 0.00 35.64 3.73
1842 3659 6.127451 GGAATTCCACCCTCAATTTAACGATT 60.127 38.462 20.04 0.00 35.64 3.34
1843 3660 5.637006 TTCCACCCTCAATTTAACGATTG 57.363 39.130 0.00 0.00 38.16 2.67
1844 3661 4.013728 TCCACCCTCAATTTAACGATTGG 58.986 43.478 0.00 0.00 37.56 3.16
1845 3662 3.761752 CCACCCTCAATTTAACGATTGGT 59.238 43.478 0.00 0.00 37.56 3.67
1846 3663 4.944930 CCACCCTCAATTTAACGATTGGTA 59.055 41.667 0.00 0.00 37.56 3.25
1847 3664 5.416326 CCACCCTCAATTTAACGATTGGTAA 59.584 40.000 0.00 0.00 37.56 2.85
1848 3665 6.096282 CCACCCTCAATTTAACGATTGGTAAT 59.904 38.462 0.00 0.00 37.56 1.89
1849 3666 7.193595 CACCCTCAATTTAACGATTGGTAATC 58.806 38.462 0.00 0.00 37.56 1.75
1916 3735 3.708563 TTGTCTCCCGCAAAAGAAAAG 57.291 42.857 0.00 0.00 0.00 2.27
1917 3736 2.925724 TGTCTCCCGCAAAAGAAAAGA 58.074 42.857 0.00 0.00 0.00 2.52
1918 3737 3.283751 TGTCTCCCGCAAAAGAAAAGAA 58.716 40.909 0.00 0.00 0.00 2.52
1927 3746 8.079809 TCCCGCAAAAGAAAAGAAAAACTATAG 58.920 33.333 0.00 0.00 0.00 1.31
1963 3783 1.005037 TTGCTCTCGATTGGCGTGT 60.005 52.632 0.00 0.00 41.80 4.49
1990 3810 5.336451 CGAGTGATATTTGATCATACCCCGA 60.336 44.000 0.00 0.00 0.00 5.14
1991 3811 6.433847 AGTGATATTTGATCATACCCCGAA 57.566 37.500 0.00 0.00 0.00 4.30
1992 3812 6.467677 AGTGATATTTGATCATACCCCGAAG 58.532 40.000 0.00 0.00 0.00 3.79
1993 3813 6.270000 AGTGATATTTGATCATACCCCGAAGA 59.730 38.462 0.00 0.00 0.00 2.87
1994 3814 6.591834 GTGATATTTGATCATACCCCGAAGAG 59.408 42.308 0.00 0.00 0.00 2.85
1995 3815 6.496911 TGATATTTGATCATACCCCGAAGAGA 59.503 38.462 0.00 0.00 0.00 3.10
1996 3816 5.630415 ATTTGATCATACCCCGAAGAGAA 57.370 39.130 0.00 0.00 0.00 2.87
1997 3817 4.672587 TTGATCATACCCCGAAGAGAAG 57.327 45.455 0.00 0.00 0.00 2.85
1998 3818 2.965831 TGATCATACCCCGAAGAGAAGG 59.034 50.000 0.00 0.00 0.00 3.46
1999 3819 1.120530 TCATACCCCGAAGAGAAGGC 58.879 55.000 0.00 0.00 0.00 4.35
2000 3820 0.106894 CATACCCCGAAGAGAAGGCC 59.893 60.000 0.00 0.00 0.00 5.19
2001 3821 1.400530 ATACCCCGAAGAGAAGGCCG 61.401 60.000 0.00 0.00 0.00 6.13
2002 3822 4.162690 CCCCGAAGAGAAGGCCGG 62.163 72.222 0.00 0.00 41.47 6.13
2004 3824 3.391382 CCGAAGAGAAGGCCGGGT 61.391 66.667 2.18 0.00 38.42 5.28
2005 3825 2.125512 CGAAGAGAAGGCCGGGTG 60.126 66.667 2.18 0.00 0.00 4.61
2006 3826 2.436824 GAAGAGAAGGCCGGGTGC 60.437 66.667 2.18 0.00 40.16 5.01
2007 3827 3.249189 AAGAGAAGGCCGGGTGCA 61.249 61.111 2.18 0.00 43.89 4.57
2008 3828 2.543067 GAAGAGAAGGCCGGGTGCAT 62.543 60.000 2.18 0.00 43.89 3.96
2009 3829 2.825836 GAGAAGGCCGGGTGCATG 60.826 66.667 2.18 0.00 43.89 4.06
2016 3836 3.803082 CCGGGTGCATGCTCGTTG 61.803 66.667 20.33 8.23 0.00 4.10
2017 3837 3.049674 CGGGTGCATGCTCGTTGT 61.050 61.111 20.33 0.00 0.00 3.32
2018 3838 1.739929 CGGGTGCATGCTCGTTGTA 60.740 57.895 20.33 0.00 0.00 2.41
2019 3839 1.089481 CGGGTGCATGCTCGTTGTAT 61.089 55.000 20.33 0.00 0.00 2.29
2020 3840 1.094785 GGGTGCATGCTCGTTGTATT 58.905 50.000 20.33 0.00 0.00 1.89
2021 3841 1.472480 GGGTGCATGCTCGTTGTATTT 59.528 47.619 20.33 0.00 0.00 1.40
2022 3842 2.518949 GGTGCATGCTCGTTGTATTTG 58.481 47.619 20.33 0.00 0.00 2.32
2023 3843 2.095263 GGTGCATGCTCGTTGTATTTGT 60.095 45.455 20.33 0.00 0.00 2.83
2024 3844 3.126171 GGTGCATGCTCGTTGTATTTGTA 59.874 43.478 20.33 0.00 0.00 2.41
2025 3845 4.201910 GGTGCATGCTCGTTGTATTTGTAT 60.202 41.667 20.33 0.00 0.00 2.29
2026 3846 5.331902 GTGCATGCTCGTTGTATTTGTATT 58.668 37.500 20.33 0.00 0.00 1.89
2027 3847 5.799936 GTGCATGCTCGTTGTATTTGTATTT 59.200 36.000 20.33 0.00 0.00 1.40
2028 3848 6.021468 GTGCATGCTCGTTGTATTTGTATTTC 60.021 38.462 20.33 0.00 0.00 2.17
2029 3849 6.128035 TGCATGCTCGTTGTATTTGTATTTCT 60.128 34.615 20.33 0.00 0.00 2.52
2030 3850 6.747280 GCATGCTCGTTGTATTTGTATTTCTT 59.253 34.615 11.37 0.00 0.00 2.52
2031 3851 7.273381 GCATGCTCGTTGTATTTGTATTTCTTT 59.727 33.333 11.37 0.00 0.00 2.52
2032 3852 9.767684 CATGCTCGTTGTATTTGTATTTCTTTA 57.232 29.630 0.00 0.00 0.00 1.85
2060 3880 9.770097 TGCTTTATTTTGTGACAATAAAATCCA 57.230 25.926 12.42 0.00 37.94 3.41
2066 3886 9.696917 ATTTTGTGACAATAAAATCCACTCTTC 57.303 29.630 0.00 0.00 33.31 2.87
2067 3887 6.480524 TGTGACAATAAAATCCACTCTTCG 57.519 37.500 0.00 0.00 0.00 3.79
2068 3888 5.995282 TGTGACAATAAAATCCACTCTTCGT 59.005 36.000 0.00 0.00 0.00 3.85
2069 3889 7.156000 TGTGACAATAAAATCCACTCTTCGTA 58.844 34.615 0.00 0.00 0.00 3.43
2070 3890 7.658167 TGTGACAATAAAATCCACTCTTCGTAA 59.342 33.333 0.00 0.00 0.00 3.18
2073 3893 9.887406 GACAATAAAATCCACTCTTCGTAAAAA 57.113 29.630 0.00 0.00 0.00 1.94
2144 3964 5.548406 ACAGTAGACGGCAAGAACTTAAAT 58.452 37.500 0.00 0.00 0.00 1.40
2229 4054 6.653526 TTGCATTATCAATATGAAGGTGGG 57.346 37.500 0.00 0.00 0.00 4.61
2230 4055 5.078949 TGCATTATCAATATGAAGGTGGGG 58.921 41.667 0.00 0.00 0.00 4.96
2243 4068 0.331616 GGTGGGGTGCCTATGAAGTT 59.668 55.000 0.00 0.00 0.00 2.66
2245 4070 2.525368 GTGGGGTGCCTATGAAGTTTT 58.475 47.619 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.660552 ATATTCGGCGCGGTTCGG 60.661 61.111 15.06 0.00 38.94 4.30
1 2 2.544359 CATATTCGGCGCGGTTCG 59.456 61.111 15.06 6.13 42.12 3.95
2 3 2.604174 CCCATATTCGGCGCGGTTC 61.604 63.158 15.06 0.00 0.00 3.62
3 4 2.590575 CCCATATTCGGCGCGGTT 60.591 61.111 15.06 6.63 0.00 4.44
10 11 1.800586 CGTGAATCAGCCCATATTCGG 59.199 52.381 0.00 0.00 35.32 4.30
11 12 1.195448 GCGTGAATCAGCCCATATTCG 59.805 52.381 0.00 0.00 35.32 3.34
12 13 2.221169 TGCGTGAATCAGCCCATATTC 58.779 47.619 3.08 0.00 33.57 1.75
13 14 2.158769 TCTGCGTGAATCAGCCCATATT 60.159 45.455 3.08 0.00 0.00 1.28
14 15 1.417517 TCTGCGTGAATCAGCCCATAT 59.582 47.619 3.08 0.00 0.00 1.78
15 16 0.829990 TCTGCGTGAATCAGCCCATA 59.170 50.000 3.08 0.00 0.00 2.74
16 17 0.182061 ATCTGCGTGAATCAGCCCAT 59.818 50.000 3.08 0.00 0.00 4.00
17 18 0.829990 TATCTGCGTGAATCAGCCCA 59.170 50.000 3.08 0.00 0.00 5.36
18 19 2.072298 GATATCTGCGTGAATCAGCCC 58.928 52.381 0.00 0.00 0.00 5.19
19 20 1.723542 CGATATCTGCGTGAATCAGCC 59.276 52.381 0.34 0.00 0.00 4.85
20 21 2.660715 CTCGATATCTGCGTGAATCAGC 59.339 50.000 0.34 0.00 0.00 4.26
21 22 2.660715 GCTCGATATCTGCGTGAATCAG 59.339 50.000 0.34 0.00 0.00 2.90
22 23 2.608016 GGCTCGATATCTGCGTGAATCA 60.608 50.000 0.34 0.00 0.00 2.57
23 24 1.989165 GGCTCGATATCTGCGTGAATC 59.011 52.381 0.34 0.00 0.00 2.52
24 25 1.615883 AGGCTCGATATCTGCGTGAAT 59.384 47.619 10.51 0.00 0.00 2.57
25 26 1.032794 AGGCTCGATATCTGCGTGAA 58.967 50.000 10.51 0.00 0.00 3.18
26 27 1.032794 AAGGCTCGATATCTGCGTGA 58.967 50.000 11.58 0.00 0.00 4.35
27 28 1.858091 AAAGGCTCGATATCTGCGTG 58.142 50.000 11.58 0.00 0.00 5.34
28 29 2.604046 AAAAGGCTCGATATCTGCGT 57.396 45.000 0.34 4.30 0.00 5.24
29 30 2.032549 CCAAAAAGGCTCGATATCTGCG 60.033 50.000 0.34 0.00 0.00 5.18
30 31 3.002759 GTCCAAAAAGGCTCGATATCTGC 59.997 47.826 0.34 5.20 37.29 4.26
31 32 4.191544 TGTCCAAAAAGGCTCGATATCTG 58.808 43.478 0.34 0.00 37.29 2.90
32 33 4.487714 TGTCCAAAAAGGCTCGATATCT 57.512 40.909 0.34 0.00 37.29 1.98
33 34 6.861065 TTATGTCCAAAAAGGCTCGATATC 57.139 37.500 0.00 0.00 37.29 1.63
34 35 7.255590 CCAATTATGTCCAAAAAGGCTCGATAT 60.256 37.037 0.00 0.00 37.29 1.63
35 36 6.039270 CCAATTATGTCCAAAAAGGCTCGATA 59.961 38.462 0.00 0.00 37.29 2.92
36 37 5.163519 CCAATTATGTCCAAAAAGGCTCGAT 60.164 40.000 0.00 0.00 37.29 3.59
37 38 4.157656 CCAATTATGTCCAAAAAGGCTCGA 59.842 41.667 0.00 0.00 37.29 4.04
38 39 4.423732 CCAATTATGTCCAAAAAGGCTCG 58.576 43.478 0.00 0.00 37.29 5.03
39 40 4.758688 CCCAATTATGTCCAAAAAGGCTC 58.241 43.478 0.00 0.00 37.29 4.70
40 41 3.055167 GCCCAATTATGTCCAAAAAGGCT 60.055 43.478 0.00 0.00 37.29 4.58
41 42 3.270027 GCCCAATTATGTCCAAAAAGGC 58.730 45.455 0.00 0.00 37.29 4.35
42 43 3.678529 CGGCCCAATTATGTCCAAAAAGG 60.679 47.826 0.00 0.00 39.47 3.11
43 44 3.194542 TCGGCCCAATTATGTCCAAAAAG 59.805 43.478 0.00 0.00 0.00 2.27
44 45 3.165875 TCGGCCCAATTATGTCCAAAAA 58.834 40.909 0.00 0.00 0.00 1.94
45 46 2.808919 TCGGCCCAATTATGTCCAAAA 58.191 42.857 0.00 0.00 0.00 2.44
46 47 2.516227 TCGGCCCAATTATGTCCAAA 57.484 45.000 0.00 0.00 0.00 3.28
47 48 2.516227 TTCGGCCCAATTATGTCCAA 57.484 45.000 0.00 0.00 0.00 3.53
48 49 2.516227 TTTCGGCCCAATTATGTCCA 57.484 45.000 0.00 0.00 0.00 4.02
49 50 3.506067 CCTATTTCGGCCCAATTATGTCC 59.494 47.826 0.00 0.00 0.00 4.02
50 51 3.057526 GCCTATTTCGGCCCAATTATGTC 60.058 47.826 0.00 0.00 44.41 3.06
51 52 2.890945 GCCTATTTCGGCCCAATTATGT 59.109 45.455 0.00 0.00 44.41 2.29
52 53 3.575965 GCCTATTTCGGCCCAATTATG 57.424 47.619 0.00 0.00 44.41 1.90
61 62 2.203015 TCCAGCGCCTATTTCGGC 60.203 61.111 2.29 0.00 46.68 5.54
62 63 1.595382 CCTCCAGCGCCTATTTCGG 60.595 63.158 2.29 0.00 0.00 4.30
63 64 2.247437 GCCTCCAGCGCCTATTTCG 61.247 63.158 2.29 0.00 0.00 3.46
64 65 3.737824 GCCTCCAGCGCCTATTTC 58.262 61.111 2.29 0.00 0.00 2.17
73 74 2.512896 CCCCATGTAGCCTCCAGC 59.487 66.667 0.00 0.00 44.25 4.85
74 75 3.244616 CCCCCATGTAGCCTCCAG 58.755 66.667 0.00 0.00 0.00 3.86
116 117 2.965462 GATAAACTCGGCGCCGGG 60.965 66.667 45.29 45.29 46.76 5.73
117 118 3.327754 CGATAAACTCGGCGCCGG 61.328 66.667 44.95 35.79 43.82 6.13
125 126 1.152383 GGTGAGCCGGCGATAAACTC 61.152 60.000 23.20 12.00 0.00 3.01
126 127 1.153429 GGTGAGCCGGCGATAAACT 60.153 57.895 23.20 0.00 0.00 2.66
127 128 2.178235 GGGTGAGCCGGCGATAAAC 61.178 63.158 23.20 15.42 34.97 2.01
128 129 2.188469 GGGTGAGCCGGCGATAAA 59.812 61.111 23.20 2.78 34.97 1.40
129 130 3.857038 GGGGTGAGCCGGCGATAA 61.857 66.667 23.20 4.88 34.97 1.75
134 135 4.115199 AATCTGGGGTGAGCCGGC 62.115 66.667 21.89 21.89 34.97 6.13
135 136 2.124570 CAATCTGGGGTGAGCCGG 60.125 66.667 0.00 0.00 34.97 6.13
136 137 2.825836 GCAATCTGGGGTGAGCCG 60.826 66.667 0.00 0.00 34.97 5.52
137 138 1.452833 GAGCAATCTGGGGTGAGCC 60.453 63.158 0.00 0.00 0.00 4.70
138 139 0.034670 AAGAGCAATCTGGGGTGAGC 60.035 55.000 0.00 0.00 0.00 4.26
139 140 2.503895 AAAGAGCAATCTGGGGTGAG 57.496 50.000 0.00 0.00 0.00 3.51
140 141 2.978156 AAAAGAGCAATCTGGGGTGA 57.022 45.000 0.00 0.00 0.00 4.02
141 142 2.095059 CGAAAAAGAGCAATCTGGGGTG 60.095 50.000 0.00 0.00 0.00 4.61
142 143 2.162681 CGAAAAAGAGCAATCTGGGGT 58.837 47.619 0.00 0.00 0.00 4.95
143 144 2.162408 GTCGAAAAAGAGCAATCTGGGG 59.838 50.000 0.00 0.00 0.00 4.96
144 145 2.159653 CGTCGAAAAAGAGCAATCTGGG 60.160 50.000 0.00 0.00 0.00 4.45
145 146 2.726066 GCGTCGAAAAAGAGCAATCTGG 60.726 50.000 0.00 0.00 0.00 3.86
146 147 2.499896 GCGTCGAAAAAGAGCAATCTG 58.500 47.619 0.00 0.00 0.00 2.90
147 148 1.464997 GGCGTCGAAAAAGAGCAATCT 59.535 47.619 0.00 0.00 0.00 2.40
148 149 1.465856 GGGCGTCGAAAAAGAGCAATC 60.466 52.381 0.00 0.00 0.00 2.67
149 150 0.521735 GGGCGTCGAAAAAGAGCAAT 59.478 50.000 0.00 0.00 0.00 3.56
150 151 0.534203 AGGGCGTCGAAAAAGAGCAA 60.534 50.000 0.00 0.00 0.00 3.91
151 152 1.070786 AGGGCGTCGAAAAAGAGCA 59.929 52.632 0.00 0.00 0.00 4.26
152 153 1.497722 CAGGGCGTCGAAAAAGAGC 59.502 57.895 0.00 0.00 0.00 4.09
153 154 1.227999 TGCAGGGCGTCGAAAAAGAG 61.228 55.000 0.00 0.00 0.00 2.85
154 155 1.227704 TGCAGGGCGTCGAAAAAGA 60.228 52.632 0.00 0.00 0.00 2.52
155 156 1.207593 CTGCAGGGCGTCGAAAAAG 59.792 57.895 5.57 0.00 0.00 2.27
156 157 2.258013 CCTGCAGGGCGTCGAAAAA 61.258 57.895 26.14 0.00 0.00 1.94
157 158 2.668212 CCTGCAGGGCGTCGAAAA 60.668 61.111 26.14 0.00 0.00 2.29
158 159 3.621805 TCCTGCAGGGCGTCGAAA 61.622 61.111 32.23 7.74 35.41 3.46
159 160 4.373116 GTCCTGCAGGGCGTCGAA 62.373 66.667 32.23 8.58 35.41 3.71
162 163 3.842925 TTTGGTCCTGCAGGGCGTC 62.843 63.158 32.23 19.22 41.79 5.19
163 164 3.884774 TTTGGTCCTGCAGGGCGT 61.885 61.111 32.23 0.00 41.79 5.68
164 165 3.365265 GTTTGGTCCTGCAGGGCG 61.365 66.667 32.23 7.58 41.79 6.13
165 166 3.365265 CGTTTGGTCCTGCAGGGC 61.365 66.667 32.23 31.10 39.63 5.19
166 167 2.672996 CCGTTTGGTCCTGCAGGG 60.673 66.667 32.23 14.13 35.41 4.45
167 168 3.365265 GCCGTTTGGTCCTGCAGG 61.365 66.667 27.87 27.87 37.67 4.85
168 169 2.281761 AGCCGTTTGGTCCTGCAG 60.282 61.111 6.78 6.78 37.67 4.41
169 170 2.594303 CAGCCGTTTGGTCCTGCA 60.594 61.111 0.00 0.00 37.67 4.41
170 171 3.365265 CCAGCCGTTTGGTCCTGC 61.365 66.667 0.00 0.00 37.67 4.85
171 172 1.672356 CTCCAGCCGTTTGGTCCTG 60.672 63.158 2.77 0.00 39.35 3.86
172 173 1.201429 ATCTCCAGCCGTTTGGTCCT 61.201 55.000 2.77 0.00 39.35 3.85
173 174 1.026718 CATCTCCAGCCGTTTGGTCC 61.027 60.000 2.77 0.00 39.35 4.46
174 175 1.648467 GCATCTCCAGCCGTTTGGTC 61.648 60.000 2.77 0.00 39.35 4.02
175 176 1.675641 GCATCTCCAGCCGTTTGGT 60.676 57.895 2.77 0.00 39.35 3.67
176 177 1.372087 GAGCATCTCCAGCCGTTTGG 61.372 60.000 0.00 0.00 39.70 3.28
177 178 2.093216 GAGCATCTCCAGCCGTTTG 58.907 57.895 0.00 0.00 0.00 2.93
178 179 4.625800 GAGCATCTCCAGCCGTTT 57.374 55.556 0.00 0.00 0.00 3.60
188 189 9.946754 AGGGAGTACACCTTAATCAGAGCATCT 62.947 44.444 9.34 0.00 40.68 2.90
189 190 5.293560 GGAGTACACCTTAATCAGAGCATC 58.706 45.833 1.54 0.00 0.00 3.91
190 191 4.101741 GGGAGTACACCTTAATCAGAGCAT 59.898 45.833 9.34 0.00 0.00 3.79
191 192 3.451178 GGGAGTACACCTTAATCAGAGCA 59.549 47.826 9.34 0.00 0.00 4.26
192 193 3.707102 AGGGAGTACACCTTAATCAGAGC 59.293 47.826 9.34 0.00 33.64 4.09
193 194 5.068460 CAGAGGGAGTACACCTTAATCAGAG 59.932 48.000 9.34 0.00 38.79 3.35
194 195 4.956700 CAGAGGGAGTACACCTTAATCAGA 59.043 45.833 9.34 0.00 38.79 3.27
195 196 4.712337 ACAGAGGGAGTACACCTTAATCAG 59.288 45.833 9.34 3.16 38.79 2.90
196 197 4.684724 ACAGAGGGAGTACACCTTAATCA 58.315 43.478 9.34 0.00 38.79 2.57
197 198 4.099727 GGACAGAGGGAGTACACCTTAATC 59.900 50.000 9.34 7.56 38.79 1.75
198 199 4.031611 GGACAGAGGGAGTACACCTTAAT 58.968 47.826 9.34 0.00 38.79 1.40
199 200 3.077088 AGGACAGAGGGAGTACACCTTAA 59.923 47.826 9.34 0.00 38.79 1.85
200 201 2.653366 AGGACAGAGGGAGTACACCTTA 59.347 50.000 9.34 0.00 38.79 2.69
201 202 1.433592 AGGACAGAGGGAGTACACCTT 59.566 52.381 9.34 0.81 38.79 3.50
202 203 1.085715 AGGACAGAGGGAGTACACCT 58.914 55.000 9.34 9.01 42.18 4.00
203 204 1.550976 CAAGGACAGAGGGAGTACACC 59.449 57.143 0.00 0.00 0.00 4.16
204 205 2.526432 TCAAGGACAGAGGGAGTACAC 58.474 52.381 0.00 0.00 0.00 2.90
205 206 2.992847 TCAAGGACAGAGGGAGTACA 57.007 50.000 0.00 0.00 0.00 2.90
206 207 4.618920 TTTTCAAGGACAGAGGGAGTAC 57.381 45.455 0.00 0.00 0.00 2.73
207 208 4.658901 ACTTTTTCAAGGACAGAGGGAGTA 59.341 41.667 0.00 0.00 33.82 2.59
208 209 3.459969 ACTTTTTCAAGGACAGAGGGAGT 59.540 43.478 0.00 0.00 33.82 3.85
209 210 4.092116 ACTTTTTCAAGGACAGAGGGAG 57.908 45.455 0.00 0.00 33.82 4.30
210 211 4.969484 GTACTTTTTCAAGGACAGAGGGA 58.031 43.478 0.00 0.00 42.89 4.20
217 218 6.095021 AGTTGGAAGTGTACTTTTTCAAGGAC 59.905 38.462 0.00 0.00 43.60 3.85
218 219 6.184789 AGTTGGAAGTGTACTTTTTCAAGGA 58.815 36.000 0.00 0.00 36.11 3.36
219 220 6.451064 AGTTGGAAGTGTACTTTTTCAAGG 57.549 37.500 0.00 0.00 36.11 3.61
220 221 7.812669 ACAAAGTTGGAAGTGTACTTTTTCAAG 59.187 33.333 0.00 0.00 39.40 3.02
221 222 7.662897 ACAAAGTTGGAAGTGTACTTTTTCAA 58.337 30.769 0.00 0.00 39.40 2.69
222 223 7.222000 ACAAAGTTGGAAGTGTACTTTTTCA 57.778 32.000 0.00 0.00 39.40 2.69
223 224 7.062956 CCAACAAAGTTGGAAGTGTACTTTTTC 59.937 37.037 21.24 0.00 42.06 2.29
224 225 6.871492 CCAACAAAGTTGGAAGTGTACTTTTT 59.129 34.615 21.24 0.00 42.06 1.94
225 226 6.209788 TCCAACAAAGTTGGAAGTGTACTTTT 59.790 34.615 24.83 0.00 44.90 2.27
226 227 5.712917 TCCAACAAAGTTGGAAGTGTACTTT 59.287 36.000 24.83 0.00 44.90 2.66
227 228 5.258051 TCCAACAAAGTTGGAAGTGTACTT 58.742 37.500 24.83 0.00 44.90 2.24
228 229 4.850680 TCCAACAAAGTTGGAAGTGTACT 58.149 39.130 24.83 0.00 44.90 2.73
229 230 4.036380 CCTCCAACAAAGTTGGAAGTGTAC 59.964 45.833 26.25 0.00 46.85 2.90
230 231 4.204012 CCTCCAACAAAGTTGGAAGTGTA 58.796 43.478 26.25 8.75 46.85 2.90
231 232 3.023832 CCTCCAACAAAGTTGGAAGTGT 58.976 45.455 26.25 0.00 46.85 3.55
232 233 2.362077 CCCTCCAACAAAGTTGGAAGTG 59.638 50.000 26.25 18.64 46.85 3.16
233 234 2.024369 ACCCTCCAACAAAGTTGGAAGT 60.024 45.455 26.25 22.95 46.85 3.01
234 235 2.623416 GACCCTCCAACAAAGTTGGAAG 59.377 50.000 26.25 21.51 46.85 3.46
235 236 2.024846 TGACCCTCCAACAAAGTTGGAA 60.025 45.455 26.25 12.88 46.85 3.53
236 237 1.566703 TGACCCTCCAACAAAGTTGGA 59.433 47.619 25.17 25.17 45.61 3.53
237 238 2.065899 TGACCCTCCAACAAAGTTGG 57.934 50.000 20.09 20.09 40.87 3.77
238 239 4.670896 ATTTGACCCTCCAACAAAGTTG 57.329 40.909 3.00 3.00 37.04 3.16
239 240 6.553100 TGATAATTTGACCCTCCAACAAAGTT 59.447 34.615 0.00 0.00 37.04 2.66
240 241 6.015434 GTGATAATTTGACCCTCCAACAAAGT 60.015 38.462 0.00 0.00 37.04 2.66
241 242 6.015519 TGTGATAATTTGACCCTCCAACAAAG 60.016 38.462 0.00 0.00 37.04 2.77
242 243 5.835819 TGTGATAATTTGACCCTCCAACAAA 59.164 36.000 0.00 0.00 37.79 2.83
243 244 5.389520 TGTGATAATTTGACCCTCCAACAA 58.610 37.500 0.00 0.00 0.00 2.83
244 245 4.991776 TGTGATAATTTGACCCTCCAACA 58.008 39.130 0.00 0.00 0.00 3.33
245 246 5.975693 TTGTGATAATTTGACCCTCCAAC 57.024 39.130 0.00 0.00 0.00 3.77
246 247 6.074648 ACTTTGTGATAATTTGACCCTCCAA 58.925 36.000 0.00 0.00 0.00 3.53
247 248 5.640147 ACTTTGTGATAATTTGACCCTCCA 58.360 37.500 0.00 0.00 0.00 3.86
248 249 6.590234 AACTTTGTGATAATTTGACCCTCC 57.410 37.500 0.00 0.00 0.00 4.30
249 250 9.406828 GTTAAACTTTGTGATAATTTGACCCTC 57.593 33.333 0.00 0.00 0.00 4.30
250 251 8.364894 GGTTAAACTTTGTGATAATTTGACCCT 58.635 33.333 0.00 0.00 34.50 4.34
251 252 7.327518 CGGTTAAACTTTGTGATAATTTGACCC 59.672 37.037 0.00 0.00 36.21 4.46
252 253 8.077386 TCGGTTAAACTTTGTGATAATTTGACC 58.923 33.333 0.00 0.00 36.23 4.02
253 254 9.113876 CTCGGTTAAACTTTGTGATAATTTGAC 57.886 33.333 0.00 0.00 0.00 3.18
254 255 8.842280 ACTCGGTTAAACTTTGTGATAATTTGA 58.158 29.630 0.00 0.00 0.00 2.69
255 256 9.458374 AACTCGGTTAAACTTTGTGATAATTTG 57.542 29.630 0.00 0.00 0.00 2.32
257 258 9.458374 CAAACTCGGTTAAACTTTGTGATAATT 57.542 29.630 0.00 0.00 0.00 1.40
258 259 8.626526 ACAAACTCGGTTAAACTTTGTGATAAT 58.373 29.630 8.17 0.00 34.53 1.28
259 260 7.987649 ACAAACTCGGTTAAACTTTGTGATAA 58.012 30.769 8.17 0.00 34.53 1.75
260 261 7.556733 ACAAACTCGGTTAAACTTTGTGATA 57.443 32.000 8.17 0.00 34.53 2.15
261 262 6.445357 ACAAACTCGGTTAAACTTTGTGAT 57.555 33.333 8.17 0.00 34.53 3.06
262 263 5.883503 ACAAACTCGGTTAAACTTTGTGA 57.116 34.783 8.17 0.00 34.53 3.58
263 264 5.925189 CACAAACTCGGTTAAACTTTGTG 57.075 39.130 17.37 17.37 42.96 3.33
264 265 4.082679 TGCACAAACTCGGTTAAACTTTGT 60.083 37.500 4.08 4.08 35.85 2.83
265 266 4.416620 TGCACAAACTCGGTTAAACTTTG 58.583 39.130 2.98 2.98 0.00 2.77
266 267 4.705337 TGCACAAACTCGGTTAAACTTT 57.295 36.364 0.00 0.00 0.00 2.66
267 268 4.705337 TTGCACAAACTCGGTTAAACTT 57.295 36.364 0.00 0.00 0.00 2.66
268 269 4.705337 TTTGCACAAACTCGGTTAAACT 57.295 36.364 0.00 0.00 0.00 2.66
269 270 5.765072 TTTTTGCACAAACTCGGTTAAAC 57.235 34.783 0.00 0.00 0.00 2.01
270 271 9.915629 ATATATTTTTGCACAAACTCGGTTAAA 57.084 25.926 0.00 0.00 0.00 1.52
271 272 9.562583 GATATATTTTTGCACAAACTCGGTTAA 57.437 29.630 0.00 0.00 0.00 2.01
272 273 8.731605 TGATATATTTTTGCACAAACTCGGTTA 58.268 29.630 0.00 0.00 0.00 2.85
273 274 7.598278 TGATATATTTTTGCACAAACTCGGTT 58.402 30.769 0.00 0.00 0.00 4.44
274 275 7.151999 TGATATATTTTTGCACAAACTCGGT 57.848 32.000 0.00 0.00 0.00 4.69
275 276 8.533965 CATTGATATATTTTTGCACAAACTCGG 58.466 33.333 0.00 0.00 0.00 4.63
276 277 9.075519 ACATTGATATATTTTTGCACAAACTCG 57.924 29.630 0.00 0.00 0.00 4.18
282 283 9.702494 TCACAAACATTGATATATTTTTGCACA 57.298 25.926 0.00 0.00 0.00 4.57
367 368 9.995003 ACAACAAAACATCAACATTTATACCAT 57.005 25.926 0.00 0.00 0.00 3.55
443 444 9.010029 CCCTCTGTACATAAAAGTGTGTATTTT 57.990 33.333 0.00 0.00 34.33 1.82
444 445 8.380099 TCCCTCTGTACATAAAAGTGTGTATTT 58.620 33.333 0.00 0.00 34.33 1.40
445 446 7.913789 TCCCTCTGTACATAAAAGTGTGTATT 58.086 34.615 0.00 0.00 34.33 1.89
446 447 7.490657 TCCCTCTGTACATAAAAGTGTGTAT 57.509 36.000 0.00 0.00 34.33 2.29
447 448 6.573680 GCTCCCTCTGTACATAAAAGTGTGTA 60.574 42.308 0.00 0.00 33.62 2.90
448 449 5.794894 CTCCCTCTGTACATAAAAGTGTGT 58.205 41.667 0.00 0.00 33.62 3.72
449 450 4.631813 GCTCCCTCTGTACATAAAAGTGTG 59.368 45.833 0.00 0.00 33.62 3.82
450 451 4.286032 TGCTCCCTCTGTACATAAAAGTGT 59.714 41.667 0.00 0.00 36.13 3.55
451 452 4.832248 TGCTCCCTCTGTACATAAAAGTG 58.168 43.478 0.00 0.00 0.00 3.16
452 453 5.431765 CATGCTCCCTCTGTACATAAAAGT 58.568 41.667 0.00 0.00 0.00 2.66
453 454 4.274459 GCATGCTCCCTCTGTACATAAAAG 59.726 45.833 11.37 0.00 0.00 2.27
454 455 4.199310 GCATGCTCCCTCTGTACATAAAA 58.801 43.478 11.37 0.00 0.00 1.52
455 456 3.741075 CGCATGCTCCCTCTGTACATAAA 60.741 47.826 17.13 0.00 0.00 1.40
456 457 2.224042 CGCATGCTCCCTCTGTACATAA 60.224 50.000 17.13 0.00 0.00 1.90
457 458 1.341209 CGCATGCTCCCTCTGTACATA 59.659 52.381 17.13 0.00 0.00 2.29
458 459 0.105593 CGCATGCTCCCTCTGTACAT 59.894 55.000 17.13 0.00 0.00 2.29
459 460 1.517361 CGCATGCTCCCTCTGTACA 59.483 57.895 17.13 0.00 0.00 2.90
460 461 1.227380 CCGCATGCTCCCTCTGTAC 60.227 63.158 17.13 0.00 0.00 2.90
461 462 1.381191 TCCGCATGCTCCCTCTGTA 60.381 57.895 17.13 0.00 0.00 2.74
462 463 2.685017 TCCGCATGCTCCCTCTGT 60.685 61.111 17.13 0.00 0.00 3.41
463 464 1.395045 TAGTCCGCATGCTCCCTCTG 61.395 60.000 17.13 0.00 0.00 3.35
464 465 1.075970 TAGTCCGCATGCTCCCTCT 60.076 57.895 17.13 9.17 0.00 3.69
465 466 1.068250 GTAGTCCGCATGCTCCCTC 59.932 63.158 17.13 1.83 0.00 4.30
466 467 2.435693 GGTAGTCCGCATGCTCCCT 61.436 63.158 17.13 10.32 0.00 4.20
467 468 2.109181 GGTAGTCCGCATGCTCCC 59.891 66.667 17.13 2.58 0.00 4.30
468 469 0.392461 TTTGGTAGTCCGCATGCTCC 60.392 55.000 17.13 8.71 36.30 4.70
469 470 0.727398 GTTTGGTAGTCCGCATGCTC 59.273 55.000 17.13 6.22 36.30 4.26
470 471 0.036164 TGTTTGGTAGTCCGCATGCT 59.964 50.000 17.13 0.00 36.30 3.79
471 472 0.168128 GTGTTTGGTAGTCCGCATGC 59.832 55.000 7.91 7.91 36.30 4.06
472 473 1.518325 TGTGTTTGGTAGTCCGCATG 58.482 50.000 0.00 0.00 36.30 4.06
479 480 4.844349 AGCTATGGATGTGTTTGGTAGT 57.156 40.909 0.00 0.00 0.00 2.73
487 488 3.941483 GCACAAGTTAGCTATGGATGTGT 59.059 43.478 20.86 8.39 39.02 3.72
491 492 2.213499 GCGCACAAGTTAGCTATGGAT 58.787 47.619 0.30 0.00 0.00 3.41
492 493 1.651987 GCGCACAAGTTAGCTATGGA 58.348 50.000 0.30 0.00 0.00 3.41
495 496 1.135083 AGTCGCGCACAAGTTAGCTAT 60.135 47.619 8.75 0.00 0.00 2.97
497 498 0.600255 AAGTCGCGCACAAGTTAGCT 60.600 50.000 8.75 0.00 0.00 3.32
504 505 1.011684 CGAACAAAGTCGCGCACAA 60.012 52.632 8.75 0.00 33.66 3.33
518 519 2.506217 TGCGACGATCTGGCGAAC 60.506 61.111 15.40 1.32 34.83 3.95
557 562 1.277557 CTGTCTCCACTTCCTTCCTGG 59.722 57.143 0.00 0.00 37.10 4.45
641 650 1.338674 TGGCACGTATTTGTCCTCCTG 60.339 52.381 0.00 0.00 0.00 3.86
745 783 1.165270 CGGGGAAAAGTCATGTCACC 58.835 55.000 0.00 0.00 0.00 4.02
858 923 1.842007 CCCTGGTGGATGGATGGAG 59.158 63.158 0.00 0.00 35.39 3.86
1014 1686 2.603473 AGCACGTAGGCCTCCACA 60.603 61.111 9.68 0.00 0.00 4.17
1113 1788 2.514824 GCGGCCTCCATGTCCTTC 60.515 66.667 0.00 0.00 0.00 3.46
1149 1824 0.537143 CACCACCAACAGCAGCCTTA 60.537 55.000 0.00 0.00 0.00 2.69
1160 1835 4.182433 TGCTCGCACCACCACCAA 62.182 61.111 0.00 0.00 0.00 3.67
1268 1958 1.229428 ACAACTTCGTGGCATGTCAG 58.771 50.000 0.00 6.84 0.00 3.51
1271 1965 1.535462 GCTTACAACTTCGTGGCATGT 59.465 47.619 6.60 0.15 0.00 3.21
1300 1994 4.521062 AAGGCGCGGCAGCTCTAG 62.521 66.667 34.94 0.00 42.32 2.43
1305 1999 4.467062 GAAGAAAGGCGCGGCAGC 62.467 66.667 34.94 21.83 40.74 5.25
1313 2008 4.262420 CCTGATCCTAGCTAGAAGAAAGGC 60.262 50.000 22.70 4.50 0.00 4.35
1314 2009 5.144100 TCCTGATCCTAGCTAGAAGAAAGG 58.856 45.833 22.70 19.25 0.00 3.11
1332 2039 0.965866 CTCTACACACCCGCTCCTGA 60.966 60.000 0.00 0.00 0.00 3.86
1334 2041 0.542232 AACTCTACACACCCGCTCCT 60.542 55.000 0.00 0.00 0.00 3.69
1335 2042 0.320697 AAACTCTACACACCCGCTCC 59.679 55.000 0.00 0.00 0.00 4.70
1337 2056 0.756903 ACAAACTCTACACACCCGCT 59.243 50.000 0.00 0.00 0.00 5.52
1339 2058 2.557317 ACAACAAACTCTACACACCCG 58.443 47.619 0.00 0.00 0.00 5.28
1341 2060 4.330620 TCGAAACAACAAACTCTACACACC 59.669 41.667 0.00 0.00 0.00 4.16
1346 2065 5.177696 AGCTGATCGAAACAACAAACTCTAC 59.822 40.000 0.00 0.00 0.00 2.59
1347 2066 5.297547 AGCTGATCGAAACAACAAACTCTA 58.702 37.500 0.00 0.00 0.00 2.43
1348 2067 4.130118 AGCTGATCGAAACAACAAACTCT 58.870 39.130 0.00 0.00 0.00 3.24
1349 2068 4.474226 AGCTGATCGAAACAACAAACTC 57.526 40.909 0.00 0.00 0.00 3.01
1358 2077 3.589988 TCCAAGAGAAGCTGATCGAAAC 58.410 45.455 0.00 0.00 0.00 2.78
1380 2103 4.770795 AGAACTTGCTTTACACACACTCT 58.229 39.130 0.00 0.00 0.00 3.24
1389 2112 9.093970 ACCAAATAACAAAAGAACTTGCTTTAC 57.906 29.630 0.00 0.00 37.12 2.01
1390 2113 9.308318 GACCAAATAACAAAAGAACTTGCTTTA 57.692 29.630 0.00 0.00 37.12 1.85
1435 2159 4.046938 TGCAGGATTACTCTTCGCTTAG 57.953 45.455 0.00 0.00 0.00 2.18
1518 2288 3.438360 CTTGCTTGAACAGAAACGCTTT 58.562 40.909 0.00 0.00 0.00 3.51
1559 2329 4.898320 GGTAGTCCCCTCTTTTCGTAAAA 58.102 43.478 0.00 0.00 0.00 1.52
1560 2330 4.541973 GGTAGTCCCCTCTTTTCGTAAA 57.458 45.455 0.00 0.00 0.00 2.01
1574 2344 3.851128 GCAGAGGCCGGGTAGTCC 61.851 72.222 2.18 0.00 0.00 3.85
1575 2345 2.370647 GATGCAGAGGCCGGGTAGTC 62.371 65.000 2.18 0.00 40.13 2.59
1576 2346 2.365635 ATGCAGAGGCCGGGTAGT 60.366 61.111 2.18 0.00 40.13 2.73
1577 2347 2.374830 CTGATGCAGAGGCCGGGTAG 62.375 65.000 2.18 0.00 40.13 3.18
1581 2351 1.817099 GTTCTGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 41.75 6.13
1582 2352 2.169789 CGTTCTGATGCAGAGGCCG 61.170 63.158 0.00 0.00 41.75 6.13
1583 2353 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
1584 2354 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
1592 2362 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
1593 2363 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
1595 2365 0.810031 GTGGCCGTATGCATCGTTCT 60.810 55.000 0.19 0.00 43.89 3.01
1596 2366 1.641677 GTGGCCGTATGCATCGTTC 59.358 57.895 0.19 2.49 43.89 3.95
1597 2367 1.817941 GGTGGCCGTATGCATCGTT 60.818 57.895 0.19 0.00 43.89 3.85
1598 2368 2.203015 GGTGGCCGTATGCATCGT 60.203 61.111 0.19 0.00 43.89 3.73
1599 2369 1.095228 AAAGGTGGCCGTATGCATCG 61.095 55.000 0.19 7.03 43.89 3.84
1600 2370 1.961793 TAAAGGTGGCCGTATGCATC 58.038 50.000 0.19 0.00 43.89 3.91
1601 2371 2.656947 ATAAAGGTGGCCGTATGCAT 57.343 45.000 3.79 3.79 43.89 3.96
1602 2372 3.562343 TTATAAAGGTGGCCGTATGCA 57.438 42.857 0.00 0.00 43.89 3.96
1603 2373 6.563222 TTATTTATAAAGGTGGCCGTATGC 57.437 37.500 3.94 0.00 40.16 3.14
1604 2374 6.205853 TGCTTATTTATAAAGGTGGCCGTATG 59.794 38.462 3.94 0.00 0.00 2.39
1605 2375 6.300703 TGCTTATTTATAAAGGTGGCCGTAT 58.699 36.000 3.94 0.00 0.00 3.06
1606 2376 5.682659 TGCTTATTTATAAAGGTGGCCGTA 58.317 37.500 3.94 0.00 0.00 4.02
1623 2393 8.409358 ACAGAAGTTTGAACCTATTTGCTTAT 57.591 30.769 0.00 0.00 0.00 1.73
1625 2395 6.715347 ACAGAAGTTTGAACCTATTTGCTT 57.285 33.333 0.00 0.00 0.00 3.91
1626 2396 6.321181 TGAACAGAAGTTTGAACCTATTTGCT 59.679 34.615 0.00 0.00 38.30 3.91
1628 2398 8.807581 GTTTGAACAGAAGTTTGAACCTATTTG 58.192 33.333 0.00 0.00 38.30 2.32
1629 2399 8.527810 TGTTTGAACAGAAGTTTGAACCTATTT 58.472 29.630 0.00 0.00 38.30 1.40
1633 2403 5.975693 TGTTTGAACAGAAGTTTGAACCT 57.024 34.783 0.00 0.00 38.30 3.50
1634 2404 5.576774 CCTTGTTTGAACAGAAGTTTGAACC 59.423 40.000 0.00 0.00 40.50 3.62
1635 2405 6.156519 ACCTTGTTTGAACAGAAGTTTGAAC 58.843 36.000 0.00 0.00 40.50 3.18
1636 2406 6.339587 ACCTTGTTTGAACAGAAGTTTGAA 57.660 33.333 0.00 0.00 40.50 2.69
1637 2407 5.105917 GGACCTTGTTTGAACAGAAGTTTGA 60.106 40.000 0.00 0.00 40.50 2.69
1638 2408 5.102313 GGACCTTGTTTGAACAGAAGTTTG 58.898 41.667 0.00 0.00 40.50 2.93
1642 2412 3.287222 TGGGACCTTGTTTGAACAGAAG 58.713 45.455 0.00 0.00 40.50 2.85
1643 2413 3.374042 TGGGACCTTGTTTGAACAGAA 57.626 42.857 0.00 0.00 40.50 3.02
1644 2414 3.221771 CATGGGACCTTGTTTGAACAGA 58.778 45.455 0.00 0.00 40.50 3.41
1645 2415 2.288395 GCATGGGACCTTGTTTGAACAG 60.288 50.000 6.17 0.00 40.50 3.16
1746 3563 2.230660 GGCATAGTATCAGCCCCAAAC 58.769 52.381 0.82 0.00 42.58 2.93
1798 3615 7.813148 GGAATTCCAACAATGATGATCATCATC 59.187 37.037 38.60 26.58 44.93 2.92
1799 3616 7.667557 GGAATTCCAACAATGATGATCATCAT 58.332 34.615 35.35 35.35 46.17 2.45
1800 3617 6.608002 TGGAATTCCAACAATGATGATCATCA 59.392 34.615 34.35 34.35 46.33 3.07
1801 3618 7.046292 TGGAATTCCAACAATGATGATCATC 57.954 36.000 25.13 25.91 44.35 2.92
1816 3633 4.461081 CGTTAAATTGAGGGTGGAATTCCA 59.539 41.667 23.63 23.63 45.30 3.53
1817 3634 4.703093 TCGTTAAATTGAGGGTGGAATTCC 59.297 41.667 18.17 18.17 0.00 3.01
1818 3635 5.890424 TCGTTAAATTGAGGGTGGAATTC 57.110 39.130 0.00 0.00 0.00 2.17
1819 3636 6.350949 CCAATCGTTAAATTGAGGGTGGAATT 60.351 38.462 2.09 0.00 38.64 2.17
1820 3637 5.127031 CCAATCGTTAAATTGAGGGTGGAAT 59.873 40.000 2.09 0.00 38.64 3.01
1821 3638 4.461081 CCAATCGTTAAATTGAGGGTGGAA 59.539 41.667 2.09 0.00 38.64 3.53
1822 3639 4.013728 CCAATCGTTAAATTGAGGGTGGA 58.986 43.478 2.09 0.00 38.64 4.02
1823 3640 3.761752 ACCAATCGTTAAATTGAGGGTGG 59.238 43.478 2.09 0.00 38.64 4.61
1824 3641 6.503589 TTACCAATCGTTAAATTGAGGGTG 57.496 37.500 2.09 0.00 38.64 4.61
1825 3642 6.887545 TGATTACCAATCGTTAAATTGAGGGT 59.112 34.615 2.09 0.00 40.84 4.34
1826 3643 7.328277 TGATTACCAATCGTTAAATTGAGGG 57.672 36.000 2.09 0.00 40.84 4.30
1893 3710 3.430333 TTCTTTTGCGGGAGACAAAAC 57.570 42.857 0.00 0.00 39.27 2.43
1927 3746 5.008118 AGAGCAAGACAAGTTGTTAGAAAGC 59.992 40.000 10.45 8.92 0.00 3.51
1963 3783 7.416326 CGGGGTATGATCAAATATCACTCGATA 60.416 40.741 0.00 0.00 38.48 2.92
1990 3810 2.606587 ATGCACCCGGCCTTCTCTT 61.607 57.895 0.00 0.00 43.89 2.85
1991 3811 3.011517 ATGCACCCGGCCTTCTCT 61.012 61.111 0.00 0.00 43.89 3.10
1992 3812 2.825836 CATGCACCCGGCCTTCTC 60.826 66.667 0.00 0.00 43.89 2.87
1999 3819 3.803082 CAACGAGCATGCACCCGG 61.803 66.667 21.98 3.62 0.00 5.73
2000 3820 1.089481 ATACAACGAGCATGCACCCG 61.089 55.000 21.98 20.97 0.00 5.28
2001 3821 1.094785 AATACAACGAGCATGCACCC 58.905 50.000 21.98 7.57 0.00 4.61
2002 3822 2.095263 ACAAATACAACGAGCATGCACC 60.095 45.455 21.98 10.27 0.00 5.01
2003 3823 3.201726 ACAAATACAACGAGCATGCAC 57.798 42.857 21.98 13.43 0.00 4.57
2004 3824 5.559427 AATACAAATACAACGAGCATGCA 57.441 34.783 21.98 0.00 0.00 3.96
2005 3825 6.258160 AGAAATACAAATACAACGAGCATGC 58.742 36.000 10.51 10.51 0.00 4.06
2006 3826 8.673626 AAAGAAATACAAATACAACGAGCATG 57.326 30.769 0.00 0.00 0.00 4.06
2034 3854 9.770097 TGGATTTTATTGTCACAAAATAAAGCA 57.230 25.926 0.00 0.00 39.42 3.91
2040 3860 9.696917 GAAGAGTGGATTTTATTGTCACAAAAT 57.303 29.630 0.00 4.67 37.12 1.82
2041 3861 7.860373 CGAAGAGTGGATTTTATTGTCACAAAA 59.140 33.333 0.00 0.00 0.00 2.44
2042 3862 7.012894 ACGAAGAGTGGATTTTATTGTCACAAA 59.987 33.333 0.00 0.00 0.00 2.83
2043 3863 6.485313 ACGAAGAGTGGATTTTATTGTCACAA 59.515 34.615 0.00 0.00 0.00 3.33
2044 3864 5.995282 ACGAAGAGTGGATTTTATTGTCACA 59.005 36.000 0.00 0.00 0.00 3.58
2045 3865 6.481954 ACGAAGAGTGGATTTTATTGTCAC 57.518 37.500 0.00 0.00 0.00 3.67
2046 3866 8.610248 TTTACGAAGAGTGGATTTTATTGTCA 57.390 30.769 0.00 0.00 0.00 3.58
2047 3867 9.887406 TTTTTACGAAGAGTGGATTTTATTGTC 57.113 29.630 0.00 0.00 0.00 3.18
2090 3910 8.362639 GCCAATATTGATGTCCTTGTCATTATT 58.637 33.333 17.23 0.00 34.10 1.40
2093 3913 5.657745 TGCCAATATTGATGTCCTTGTCATT 59.342 36.000 17.23 0.00 0.00 2.57
2107 3927 4.445718 CGTCTACTGTAGCTGCCAATATTG 59.554 45.833 9.98 8.58 0.00 1.90
2114 3934 1.227002 GCCGTCTACTGTAGCTGCC 60.227 63.158 9.98 0.00 0.00 4.85
2144 3964 2.666026 GATAGCGCATCATCGTCTTCA 58.334 47.619 11.47 0.00 33.46 3.02
2221 4046 0.623723 TTCATAGGCACCCCACCTTC 59.376 55.000 0.00 0.00 38.81 3.46
2226 4051 2.990740 AAAACTTCATAGGCACCCCA 57.009 45.000 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.