Multiple sequence alignment - TraesCS6B01G085400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G085400 chr6B 100.000 2248 0 0 1 2248 62147389 62145142 0.000000e+00 4152
1 TraesCS6B01G085400 chr6B 85.542 332 17 15 989 1301 62213393 62213074 3.600000e-83 318
2 TraesCS6B01G085400 chr6B 84.568 324 18 10 989 1293 62179042 62178732 2.180000e-75 292
3 TraesCS6B01G085400 chr6B 83.232 328 18 12 988 1293 62154926 62154614 1.320000e-67 267
4 TraesCS6B01G085400 chr6B 84.762 210 20 9 646 852 62179302 62179102 1.360000e-47 200
5 TraesCS6B01G085400 chr6B 82.857 210 16 11 646 852 62213654 62213462 1.070000e-38 171
6 TraesCS6B01G085400 chr6B 81.622 185 19 7 583 755 62155804 62155623 3.010000e-29 139
7 TraesCS6B01G085400 chr3A 94.286 770 41 2 1482 2248 706080956 706081725 0.000000e+00 1175
8 TraesCS6B01G085400 chr3A 91.462 773 60 5 1481 2248 728240144 728240915 0.000000e+00 1057
9 TraesCS6B01G085400 chr4B 93.506 770 45 3 1481 2248 51831046 51831812 0.000000e+00 1140
10 TraesCS6B01G085400 chr4B 90.944 773 64 5 1481 2248 385216106 385215335 0.000000e+00 1035
11 TraesCS6B01G085400 chr4B 90.933 772 64 5 1482 2248 476859912 476860682 0.000000e+00 1033
12 TraesCS6B01G085400 chr1B 94.694 735 35 3 1511 2242 19233806 19234539 0.000000e+00 1138
13 TraesCS6B01G085400 chr2D 92.885 773 49 5 1481 2248 634242573 634243344 0.000000e+00 1118
14 TraesCS6B01G085400 chr2D 85.615 431 22 9 3 414 484900629 484901038 1.240000e-112 416
15 TraesCS6B01G085400 chr2D 85.063 395 17 6 3 378 556182200 556182571 4.560000e-97 364
16 TraesCS6B01G085400 chr2D 84.131 397 17 13 3 380 393211942 393211573 2.140000e-90 342
17 TraesCS6B01G085400 chr2D 92.035 113 8 1 301 413 588795005 588794894 8.310000e-35 158
18 TraesCS6B01G085400 chr5B 92.487 772 53 4 1482 2248 81780391 81779620 0.000000e+00 1099
19 TraesCS6B01G085400 chr5B 93.590 156 7 3 1 155 41405009 41404856 1.740000e-56 230
20 TraesCS6B01G085400 chr5B 84.135 208 13 4 224 413 648300516 648300311 1.370000e-42 183
21 TraesCS6B01G085400 chr6D 88.038 953 51 19 414 1339 28634054 28634970 0.000000e+00 1070
22 TraesCS6B01G085400 chr6D 81.660 747 69 32 579 1293 28628119 28628829 1.950000e-155 558
23 TraesCS6B01G085400 chr6D 86.329 395 12 7 3 378 441744598 441744227 2.090000e-105 392
24 TraesCS6B01G085400 chr6D 85.316 395 16 10 3 378 31860562 31860933 9.810000e-99 370
25 TraesCS6B01G085400 chr6D 84.733 393 18 10 3 376 57995596 57995227 2.750000e-94 355
26 TraesCS6B01G085400 chr6D 91.150 113 7 2 301 413 413390954 413391063 1.390000e-32 150
27 TraesCS6B01G085400 chr6D 89.381 113 10 2 301 413 427234969 427234859 8.370000e-30 141
28 TraesCS6B01G085400 chr6D 88.793 116 12 1 301 416 441744241 441744127 8.370000e-30 141
29 TraesCS6B01G085400 chr6D 93.846 65 4 0 1285 1349 28628840 28628904 5.110000e-17 99
30 TraesCS6B01G085400 chr7B 90.815 773 66 3 1481 2248 71250618 71251390 0.000000e+00 1029
31 TraesCS6B01G085400 chr6A 83.058 968 64 32 433 1349 34040155 34039237 0.000000e+00 787
32 TraesCS6B01G085400 chr6A 81.258 795 71 35 579 1349 34071642 34070902 2.500000e-159 571
33 TraesCS6B01G085400 chr4D 85.349 430 21 11 3 413 484449189 484449595 7.470000e-110 407
34 TraesCS6B01G085400 chr4D 85.390 397 17 12 1 378 22537354 22536980 7.580000e-100 374
35 TraesCS6B01G085400 chr4D 85.279 394 17 9 4 378 248321407 248321036 3.530000e-98 368
36 TraesCS6B01G085400 chr4D 82.127 442 27 15 3 413 155648166 155647746 4.630000e-87 331
37 TraesCS6B01G085400 chr4D 90.435 115 10 1 300 414 22536995 22536882 1.390000e-32 150
38 TraesCS6B01G085400 chr4D 90.179 112 9 2 301 412 248321050 248320941 6.470000e-31 145
39 TraesCS6B01G085400 chr4D 86.726 113 14 1 301 413 6918346 6918235 8.430000e-25 124
40 TraesCS6B01G085400 chr1D 85.203 419 29 15 3 413 495408196 495407803 1.250000e-107 399
41 TraesCS6B01G085400 chr1D 83.991 431 28 9 3 414 470555936 470555528 2.110000e-100 375
42 TraesCS6B01G085400 chr1D 89.565 115 11 1 301 415 307837355 307837468 6.470000e-31 145
43 TraesCS6B01G085400 chr1D 88.696 115 12 1 301 415 457578345 457578458 3.010000e-29 139
44 TraesCS6B01G085400 chr1D 87.719 114 11 3 301 413 471282754 471282865 1.810000e-26 130
45 TraesCS6B01G085400 chr7D 86.398 397 13 5 1 378 402670075 402669701 1.620000e-106 396
46 TraesCS6B01G085400 chr7D 88.983 236 7 3 162 378 550273767 550274002 7.910000e-70 274
47 TraesCS6B01G085400 chr7D 90.678 118 7 4 300 416 526972967 526973081 1.080000e-33 154
48 TraesCS6B01G085400 chr4A 86.398 397 12 6 1 378 117883205 117883578 1.620000e-106 396
49 TraesCS6B01G085400 chr3D 86.329 395 12 8 1 376 365507385 365507014 2.090000e-105 392
50 TraesCS6B01G085400 chr3D 84.298 363 16 10 70 413 524200665 524201005 1.300000e-82 316
51 TraesCS6B01G085400 chr3D 88.655 238 7 4 160 378 73871691 73871927 2.840000e-69 272
52 TraesCS6B01G085400 chr3D 90.351 114 9 2 301 414 64839503 64839392 5.000000e-32 148
53 TraesCS6B01G085400 chr3D 90.265 113 10 1 301 413 8302852 8302741 1.800000e-31 147
54 TraesCS6B01G085400 chr3D 90.265 113 9 2 301 413 578864944 578865054 1.800000e-31 147
55 TraesCS6B01G085400 chr7A 84.439 392 18 6 1 373 154786497 154786864 1.650000e-91 346
56 TraesCS6B01G085400 chr5A 89.474 285 8 5 1 285 457874143 457873881 7.690000e-90 340
57 TraesCS6B01G085400 chr5D 88.655 238 6 5 160 378 432507242 432507477 1.020000e-68 270
58 TraesCS6B01G085400 chr5D 100.000 126 0 0 160 285 82082515 82082640 1.340000e-57 233
59 TraesCS6B01G085400 chr5D 91.304 115 9 1 301 415 111595293 111595180 2.990000e-34 156
60 TraesCS6B01G085400 chr5D 91.071 112 8 2 301 412 7008753 7008644 1.390000e-32 150
61 TraesCS6B01G085400 chr5D 89.916 119 8 4 301 417 454211105 454211221 1.390000e-32 150
62 TraesCS6B01G085400 chr1A 96.644 149 3 2 1 148 63483231 63483084 1.720000e-61 246
63 TraesCS6B01G085400 chr1A 89.655 116 10 2 300 414 331313612 331313726 1.800000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G085400 chr6B 62145142 62147389 2247 True 4152.0 4152 100.0000 1 2248 1 chr6B.!!$R1 2247
1 TraesCS6B01G085400 chr6B 62178732 62179302 570 True 246.0 292 84.6650 646 1293 2 chr6B.!!$R3 647
2 TraesCS6B01G085400 chr6B 62213074 62213654 580 True 244.5 318 84.1995 646 1301 2 chr6B.!!$R4 655
3 TraesCS6B01G085400 chr6B 62154614 62155804 1190 True 203.0 267 82.4270 583 1293 2 chr6B.!!$R2 710
4 TraesCS6B01G085400 chr3A 706080956 706081725 769 False 1175.0 1175 94.2860 1482 2248 1 chr3A.!!$F1 766
5 TraesCS6B01G085400 chr3A 728240144 728240915 771 False 1057.0 1057 91.4620 1481 2248 1 chr3A.!!$F2 767
6 TraesCS6B01G085400 chr4B 51831046 51831812 766 False 1140.0 1140 93.5060 1481 2248 1 chr4B.!!$F1 767
7 TraesCS6B01G085400 chr4B 385215335 385216106 771 True 1035.0 1035 90.9440 1481 2248 1 chr4B.!!$R1 767
8 TraesCS6B01G085400 chr4B 476859912 476860682 770 False 1033.0 1033 90.9330 1482 2248 1 chr4B.!!$F2 766
9 TraesCS6B01G085400 chr1B 19233806 19234539 733 False 1138.0 1138 94.6940 1511 2242 1 chr1B.!!$F1 731
10 TraesCS6B01G085400 chr2D 634242573 634243344 771 False 1118.0 1118 92.8850 1481 2248 1 chr2D.!!$F3 767
11 TraesCS6B01G085400 chr5B 81779620 81780391 771 True 1099.0 1099 92.4870 1482 2248 1 chr5B.!!$R2 766
12 TraesCS6B01G085400 chr6D 28634054 28634970 916 False 1070.0 1070 88.0380 414 1339 1 chr6D.!!$F1 925
13 TraesCS6B01G085400 chr6D 28628119 28628904 785 False 328.5 558 87.7530 579 1349 2 chr6D.!!$F4 770
14 TraesCS6B01G085400 chr7B 71250618 71251390 772 False 1029.0 1029 90.8150 1481 2248 1 chr7B.!!$F1 767
15 TraesCS6B01G085400 chr6A 34039237 34040155 918 True 787.0 787 83.0580 433 1349 1 chr6A.!!$R1 916
16 TraesCS6B01G085400 chr6A 34070902 34071642 740 True 571.0 571 81.2580 579 1349 1 chr6A.!!$R2 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
336 337 0.104462 CAGGATGGGAGGGGATGGTA 60.104 60.0 0.0 0.0 0.0 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1859 2508 0.038892 CATGCCAGAACCAAGCACAC 60.039 55.0 0.0 0.0 39.77 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 9.883142 TTTGTTTCCTGAAAATCTGTTATTTGT 57.117 25.926 0.00 0.00 31.33 2.83
78 79 9.883142 TTGTTTCCTGAAAATCTGTTATTTGTT 57.117 25.926 0.00 0.00 31.33 2.83
79 80 9.883142 TGTTTCCTGAAAATCTGTTATTTGTTT 57.117 25.926 0.00 0.00 31.33 2.83
81 82 9.541143 TTTCCTGAAAATCTGTTATTTGTTTCC 57.459 29.630 0.00 0.00 0.00 3.13
82 83 8.477419 TCCTGAAAATCTGTTATTTGTTTCCT 57.523 30.769 0.00 0.00 0.00 3.36
83 84 9.581289 TCCTGAAAATCTGTTATTTGTTTCCTA 57.419 29.630 0.00 0.00 0.00 2.94
92 93 9.403583 TCTGTTATTTGTTTCCTAAGACAAACT 57.596 29.630 4.04 0.00 45.33 2.66
93 94 9.450807 CTGTTATTTGTTTCCTAAGACAAACTG 57.549 33.333 4.04 0.00 45.33 3.16
94 95 9.179909 TGTTATTTGTTTCCTAAGACAAACTGA 57.820 29.630 4.04 0.00 45.33 3.41
97 98 6.445357 TTGTTTCCTAAGACAAACTGAACC 57.555 37.500 0.00 0.00 34.22 3.62
98 99 5.502079 TGTTTCCTAAGACAAACTGAACCA 58.498 37.500 0.00 0.00 34.22 3.67
99 100 5.946972 TGTTTCCTAAGACAAACTGAACCAA 59.053 36.000 0.00 0.00 34.22 3.67
100 101 6.605594 TGTTTCCTAAGACAAACTGAACCAAT 59.394 34.615 0.00 0.00 34.22 3.16
101 102 7.776030 TGTTTCCTAAGACAAACTGAACCAATA 59.224 33.333 0.00 0.00 34.22 1.90
102 103 8.626526 GTTTCCTAAGACAAACTGAACCAATAA 58.373 33.333 0.00 0.00 31.02 1.40
103 104 8.754991 TTCCTAAGACAAACTGAACCAATAAA 57.245 30.769 0.00 0.00 0.00 1.40
104 105 8.754991 TCCTAAGACAAACTGAACCAATAAAA 57.245 30.769 0.00 0.00 0.00 1.52
105 106 8.846211 TCCTAAGACAAACTGAACCAATAAAAG 58.154 33.333 0.00 0.00 0.00 2.27
106 107 8.082242 CCTAAGACAAACTGAACCAATAAAAGG 58.918 37.037 0.00 0.00 0.00 3.11
107 108 7.654022 AAGACAAACTGAACCAATAAAAGGA 57.346 32.000 0.00 0.00 0.00 3.36
108 109 7.654022 AGACAAACTGAACCAATAAAAGGAA 57.346 32.000 0.00 0.00 0.00 3.36
109 110 8.250143 AGACAAACTGAACCAATAAAAGGAAT 57.750 30.769 0.00 0.00 0.00 3.01
110 111 8.360390 AGACAAACTGAACCAATAAAAGGAATC 58.640 33.333 0.00 0.00 0.00 2.52
111 112 7.145323 ACAAACTGAACCAATAAAAGGAATCG 58.855 34.615 0.00 0.00 0.00 3.34
112 113 7.013846 ACAAACTGAACCAATAAAAGGAATCGA 59.986 33.333 0.00 0.00 0.00 3.59
113 114 7.703058 AACTGAACCAATAAAAGGAATCGAT 57.297 32.000 0.00 0.00 0.00 3.59
114 115 7.703058 ACTGAACCAATAAAAGGAATCGATT 57.297 32.000 11.20 11.20 0.00 3.34
115 116 7.538575 ACTGAACCAATAAAAGGAATCGATTG 58.461 34.615 16.96 0.00 0.00 2.67
116 117 7.393234 ACTGAACCAATAAAAGGAATCGATTGA 59.607 33.333 16.96 0.00 30.62 2.57
117 118 8.292444 TGAACCAATAAAAGGAATCGATTGAT 57.708 30.769 16.96 0.06 35.98 2.57
119 120 9.586435 GAACCAATAAAAGGAATCGATTGATTT 57.414 29.630 16.96 14.79 44.79 2.17
120 121 8.931385 ACCAATAAAAGGAATCGATTGATTTG 57.069 30.769 16.96 8.94 44.79 2.32
121 122 7.492344 ACCAATAAAAGGAATCGATTGATTTGC 59.508 33.333 16.96 0.00 44.79 3.68
122 123 7.492020 CCAATAAAAGGAATCGATTGATTTGCA 59.508 33.333 16.96 8.16 44.79 4.08
123 124 9.037737 CAATAAAAGGAATCGATTGATTTGCAT 57.962 29.630 16.96 9.83 44.79 3.96
127 128 9.603921 AAAAGGAATCGATTGATTTGCATAATT 57.396 25.926 16.96 0.00 44.79 1.40
128 129 9.603921 AAAGGAATCGATTGATTTGCATAATTT 57.396 25.926 16.96 2.14 44.79 1.82
201 202 9.883142 TTTGTTTCCTGAAAATCTGTTATTTGT 57.117 25.926 0.00 0.00 31.33 2.83
202 203 9.883142 TTGTTTCCTGAAAATCTGTTATTTGTT 57.117 25.926 0.00 0.00 31.33 2.83
203 204 9.883142 TGTTTCCTGAAAATCTGTTATTTGTTT 57.117 25.926 0.00 0.00 31.33 2.83
205 206 9.541143 TTTCCTGAAAATCTGTTATTTGTTTCC 57.459 29.630 0.00 0.00 0.00 3.13
206 207 8.477419 TCCTGAAAATCTGTTATTTGTTTCCT 57.523 30.769 0.00 0.00 0.00 3.36
207 208 9.581289 TCCTGAAAATCTGTTATTTGTTTCCTA 57.419 29.630 0.00 0.00 0.00 2.94
222 223 7.411486 TTGTTTCCTAAGACAAATTGAACCA 57.589 32.000 0.00 0.00 33.19 3.67
223 224 7.411486 TGTTTCCTAAGACAAATTGAACCAA 57.589 32.000 0.00 0.00 0.00 3.67
224 225 8.017418 TGTTTCCTAAGACAAATTGAACCAAT 57.983 30.769 0.00 0.00 35.39 3.16
225 226 9.137459 TGTTTCCTAAGACAAATTGAACCAATA 57.863 29.630 0.00 0.00 32.43 1.90
226 227 9.974980 GTTTCCTAAGACAAATTGAACCAATAA 57.025 29.630 0.00 0.00 32.43 1.40
230 231 9.423061 CCTAAGACAAATTGAACCAATAAAAGG 57.577 33.333 0.00 0.00 32.43 3.11
234 235 9.710900 AGACAAATTGAACCAATAAAAGGAATC 57.289 29.630 0.00 0.00 32.43 2.52
235 236 8.532977 ACAAATTGAACCAATAAAAGGAATCG 57.467 30.769 0.00 0.00 32.43 3.34
236 237 8.364142 ACAAATTGAACCAATAAAAGGAATCGA 58.636 29.630 0.00 0.00 32.43 3.59
237 238 9.369904 CAAATTGAACCAATAAAAGGAATCGAT 57.630 29.630 0.00 0.00 32.43 3.59
238 239 9.942850 AAATTGAACCAATAAAAGGAATCGATT 57.057 25.926 11.20 11.20 32.43 3.34
239 240 8.931385 ATTGAACCAATAAAAGGAATCGATTG 57.069 30.769 16.96 0.00 31.77 2.67
240 241 7.695480 TGAACCAATAAAAGGAATCGATTGA 57.305 32.000 16.96 0.00 30.62 2.57
241 242 8.292444 TGAACCAATAAAAGGAATCGATTGAT 57.708 30.769 16.96 0.06 35.98 2.57
243 244 9.586435 GAACCAATAAAAGGAATCGATTGATTT 57.414 29.630 16.96 14.79 44.79 2.17
244 245 8.931385 ACCAATAAAAGGAATCGATTGATTTG 57.069 30.769 16.96 8.94 44.79 2.32
245 246 7.492344 ACCAATAAAAGGAATCGATTGATTTGC 59.508 33.333 16.96 0.00 44.79 3.68
246 247 7.492020 CCAATAAAAGGAATCGATTGATTTGCA 59.508 33.333 16.96 8.16 44.79 4.08
247 248 9.037737 CAATAAAAGGAATCGATTGATTTGCAT 57.962 29.630 16.96 9.83 44.79 3.96
251 252 9.603921 AAAAGGAATCGATTGATTTGCATAATT 57.396 25.926 16.96 0.00 44.79 1.40
252 253 9.603921 AAAGGAATCGATTGATTTGCATAATTT 57.396 25.926 16.96 2.14 44.79 1.82
259 260 9.734620 TCGATTGATTTGCATAATTTAAGGAAG 57.265 29.630 0.00 0.00 0.00 3.46
260 261 9.520204 CGATTGATTTGCATAATTTAAGGAAGT 57.480 29.630 0.00 0.00 0.00 3.01
268 269 8.378172 TGCATAATTTAAGGAAGTTAGATCCG 57.622 34.615 0.00 0.00 42.03 4.18
269 270 7.990886 TGCATAATTTAAGGAAGTTAGATCCGT 59.009 33.333 0.00 0.00 42.03 4.69
270 271 8.283291 GCATAATTTAAGGAAGTTAGATCCGTG 58.717 37.037 0.00 0.00 42.03 4.94
271 272 9.542462 CATAATTTAAGGAAGTTAGATCCGTGA 57.458 33.333 0.00 0.00 42.03 4.35
274 275 9.462606 AATTTAAGGAAGTTAGATCCGTGATTT 57.537 29.630 0.00 0.00 42.03 2.17
275 276 7.843490 TTAAGGAAGTTAGATCCGTGATTTG 57.157 36.000 0.00 0.00 42.03 2.32
276 277 5.422214 AGGAAGTTAGATCCGTGATTTGT 57.578 39.130 0.00 0.00 42.03 2.83
277 278 5.805728 AGGAAGTTAGATCCGTGATTTGTT 58.194 37.500 0.00 0.00 42.03 2.83
278 279 6.942976 AGGAAGTTAGATCCGTGATTTGTTA 58.057 36.000 0.00 0.00 42.03 2.41
279 280 7.565680 AGGAAGTTAGATCCGTGATTTGTTAT 58.434 34.615 0.00 0.00 42.03 1.89
280 281 8.701895 AGGAAGTTAGATCCGTGATTTGTTATA 58.298 33.333 0.00 0.00 42.03 0.98
281 282 8.762426 GGAAGTTAGATCCGTGATTTGTTATAC 58.238 37.037 0.00 0.00 0.00 1.47
282 283 7.925703 AGTTAGATCCGTGATTTGTTATACG 57.074 36.000 0.00 0.00 36.39 3.06
283 284 7.486647 AGTTAGATCCGTGATTTGTTATACGT 58.513 34.615 0.00 0.00 34.96 3.57
284 285 7.977853 AGTTAGATCCGTGATTTGTTATACGTT 59.022 33.333 0.00 0.00 34.96 3.99
285 286 6.823678 AGATCCGTGATTTGTTATACGTTC 57.176 37.500 0.00 0.00 34.96 3.95
286 287 5.457799 AGATCCGTGATTTGTTATACGTTCG 59.542 40.000 0.00 0.00 34.96 3.95
287 288 4.731720 TCCGTGATTTGTTATACGTTCGA 58.268 39.130 0.00 0.00 34.96 3.71
288 289 5.159925 TCCGTGATTTGTTATACGTTCGAA 58.840 37.500 0.00 0.00 34.96 3.71
289 290 5.286797 TCCGTGATTTGTTATACGTTCGAAG 59.713 40.000 0.00 0.00 34.96 3.79
290 291 5.286797 CCGTGATTTGTTATACGTTCGAAGA 59.713 40.000 0.00 0.00 34.96 2.87
291 292 6.392498 CGTGATTTGTTATACGTTCGAAGAG 58.608 40.000 0.00 0.00 38.43 2.85
292 293 6.033196 CGTGATTTGTTATACGTTCGAAGAGT 59.967 38.462 0.00 4.65 38.43 3.24
293 294 7.164858 GTGATTTGTTATACGTTCGAAGAGTG 58.835 38.462 14.37 1.60 38.43 3.51
294 295 6.309494 TGATTTGTTATACGTTCGAAGAGTGG 59.691 38.462 14.37 0.00 38.43 4.00
295 296 5.375417 TTGTTATACGTTCGAAGAGTGGA 57.625 39.130 14.37 2.15 38.43 4.02
296 297 4.978186 TGTTATACGTTCGAAGAGTGGAG 58.022 43.478 14.37 0.00 38.43 3.86
297 298 4.696877 TGTTATACGTTCGAAGAGTGGAGA 59.303 41.667 14.37 0.00 38.43 3.71
298 299 5.163784 TGTTATACGTTCGAAGAGTGGAGAG 60.164 44.000 14.37 0.00 38.43 3.20
299 300 1.893544 ACGTTCGAAGAGTGGAGAGA 58.106 50.000 0.00 0.00 38.43 3.10
300 301 2.228059 ACGTTCGAAGAGTGGAGAGAA 58.772 47.619 0.00 0.00 38.43 2.87
301 302 2.621998 ACGTTCGAAGAGTGGAGAGAAA 59.378 45.455 0.00 0.00 38.43 2.52
302 303 3.067742 ACGTTCGAAGAGTGGAGAGAAAA 59.932 43.478 0.00 0.00 38.43 2.29
303 304 4.049186 CGTTCGAAGAGTGGAGAGAAAAA 58.951 43.478 0.00 0.00 38.43 1.94
304 305 4.686554 CGTTCGAAGAGTGGAGAGAAAAAT 59.313 41.667 0.00 0.00 38.43 1.82
305 306 5.862323 CGTTCGAAGAGTGGAGAGAAAAATA 59.138 40.000 0.00 0.00 38.43 1.40
306 307 6.365247 CGTTCGAAGAGTGGAGAGAAAAATAA 59.635 38.462 0.00 0.00 38.43 1.40
307 308 7.095774 CGTTCGAAGAGTGGAGAGAAAAATAAA 60.096 37.037 0.00 0.00 38.43 1.40
308 309 8.722394 GTTCGAAGAGTGGAGAGAAAAATAAAT 58.278 33.333 0.00 0.00 38.43 1.40
309 310 8.848474 TCGAAGAGTGGAGAGAAAAATAAATT 57.152 30.769 0.00 0.00 0.00 1.82
310 311 8.721478 TCGAAGAGTGGAGAGAAAAATAAATTG 58.279 33.333 0.00 0.00 0.00 2.32
311 312 8.721478 CGAAGAGTGGAGAGAAAAATAAATTGA 58.279 33.333 0.00 0.00 0.00 2.57
314 315 8.964772 AGAGTGGAGAGAAAAATAAATTGATGG 58.035 33.333 0.00 0.00 0.00 3.51
315 316 8.884124 AGTGGAGAGAAAAATAAATTGATGGA 57.116 30.769 0.00 0.00 0.00 3.41
316 317 8.743714 AGTGGAGAGAAAAATAAATTGATGGAC 58.256 33.333 0.00 0.00 0.00 4.02
317 318 7.976175 GTGGAGAGAAAAATAAATTGATGGACC 59.024 37.037 0.00 0.00 0.00 4.46
318 319 7.673504 TGGAGAGAAAAATAAATTGATGGACCA 59.326 33.333 0.00 0.00 0.00 4.02
319 320 8.193438 GGAGAGAAAAATAAATTGATGGACCAG 58.807 37.037 0.00 0.00 0.00 4.00
320 321 8.071177 AGAGAAAAATAAATTGATGGACCAGG 57.929 34.615 0.00 0.00 0.00 4.45
321 322 7.895429 AGAGAAAAATAAATTGATGGACCAGGA 59.105 33.333 0.00 0.00 0.00 3.86
322 323 8.613922 AGAAAAATAAATTGATGGACCAGGAT 57.386 30.769 0.00 0.00 0.00 3.24
323 324 8.480501 AGAAAAATAAATTGATGGACCAGGATG 58.519 33.333 0.00 0.00 0.00 3.51
334 335 3.585247 CAGGATGGGAGGGGATGG 58.415 66.667 0.00 0.00 0.00 3.51
335 336 1.386485 CAGGATGGGAGGGGATGGT 60.386 63.158 0.00 0.00 0.00 3.55
336 337 0.104462 CAGGATGGGAGGGGATGGTA 60.104 60.000 0.00 0.00 0.00 3.25
337 338 0.194587 AGGATGGGAGGGGATGGTAG 59.805 60.000 0.00 0.00 0.00 3.18
338 339 0.842467 GGATGGGAGGGGATGGTAGG 60.842 65.000 0.00 0.00 0.00 3.18
339 340 0.193574 GATGGGAGGGGATGGTAGGA 59.806 60.000 0.00 0.00 0.00 2.94
340 341 0.194587 ATGGGAGGGGATGGTAGGAG 59.805 60.000 0.00 0.00 0.00 3.69
341 342 1.152008 GGGAGGGGATGGTAGGAGG 60.152 68.421 0.00 0.00 0.00 4.30
342 343 1.675936 GGGAGGGGATGGTAGGAGGA 61.676 65.000 0.00 0.00 0.00 3.71
343 344 0.178918 GGAGGGGATGGTAGGAGGAG 60.179 65.000 0.00 0.00 0.00 3.69
344 345 0.861155 GAGGGGATGGTAGGAGGAGA 59.139 60.000 0.00 0.00 0.00 3.71
345 346 0.863956 AGGGGATGGTAGGAGGAGAG 59.136 60.000 0.00 0.00 0.00 3.20
346 347 0.861155 GGGGATGGTAGGAGGAGAGA 59.139 60.000 0.00 0.00 0.00 3.10
347 348 1.481615 GGGGATGGTAGGAGGAGAGAC 60.482 61.905 0.00 0.00 0.00 3.36
348 349 1.611519 GGATGGTAGGAGGAGAGACG 58.388 60.000 0.00 0.00 0.00 4.18
349 350 1.143277 GGATGGTAGGAGGAGAGACGA 59.857 57.143 0.00 0.00 0.00 4.20
350 351 2.423088 GGATGGTAGGAGGAGAGACGAA 60.423 54.545 0.00 0.00 0.00 3.85
351 352 2.893215 TGGTAGGAGGAGAGACGAAA 57.107 50.000 0.00 0.00 0.00 3.46
352 353 3.165087 TGGTAGGAGGAGAGACGAAAA 57.835 47.619 0.00 0.00 0.00 2.29
353 354 3.503365 TGGTAGGAGGAGAGACGAAAAA 58.497 45.455 0.00 0.00 0.00 1.94
378 379 3.214066 GCGAAAATAAACCGCGGAG 57.786 52.632 35.90 6.46 39.54 4.63
379 380 0.722848 GCGAAAATAAACCGCGGAGA 59.277 50.000 35.90 16.89 39.54 3.71
380 381 1.528400 GCGAAAATAAACCGCGGAGAC 60.528 52.381 35.90 12.29 39.54 3.36
394 395 1.630148 GGAGACGATTCACCAACTCG 58.370 55.000 0.00 0.00 38.34 4.18
396 397 2.609737 GGAGACGATTCACCAACTCGTT 60.610 50.000 0.00 0.00 44.89 3.85
397 398 2.662156 GAGACGATTCACCAACTCGTTC 59.338 50.000 0.00 0.00 44.89 3.95
398 399 2.035449 AGACGATTCACCAACTCGTTCA 59.965 45.455 0.00 0.00 44.89 3.18
399 400 2.993899 GACGATTCACCAACTCGTTCAT 59.006 45.455 0.00 0.00 44.89 2.57
400 401 3.399330 ACGATTCACCAACTCGTTCATT 58.601 40.909 0.00 0.00 42.52 2.57
401 402 4.562082 ACGATTCACCAACTCGTTCATTA 58.438 39.130 0.00 0.00 42.52 1.90
402 403 4.992319 ACGATTCACCAACTCGTTCATTAA 59.008 37.500 0.00 0.00 42.52 1.40
403 404 5.120208 ACGATTCACCAACTCGTTCATTAAG 59.880 40.000 0.00 0.00 42.52 1.85
404 405 5.347635 CGATTCACCAACTCGTTCATTAAGA 59.652 40.000 0.00 0.00 0.00 2.10
405 406 6.128661 CGATTCACCAACTCGTTCATTAAGAA 60.129 38.462 0.00 0.00 0.00 2.52
406 407 7.413000 CGATTCACCAACTCGTTCATTAAGAAT 60.413 37.037 0.00 0.00 38.76 2.40
407 408 8.786826 ATTCACCAACTCGTTCATTAAGAATA 57.213 30.769 0.00 0.00 38.76 1.75
408 409 7.827819 TCACCAACTCGTTCATTAAGAATAG 57.172 36.000 0.00 0.00 38.76 1.73
409 410 7.608153 TCACCAACTCGTTCATTAAGAATAGA 58.392 34.615 0.00 0.00 38.76 1.98
410 411 7.759886 TCACCAACTCGTTCATTAAGAATAGAG 59.240 37.037 14.17 14.17 43.44 2.43
411 412 7.759886 CACCAACTCGTTCATTAAGAATAGAGA 59.240 37.037 18.29 7.09 41.92 3.10
412 413 8.478877 ACCAACTCGTTCATTAAGAATAGAGAT 58.521 33.333 18.29 11.00 41.92 2.75
421 422 8.511748 TCATTAAGAATAGAGATTTAGCCCCT 57.488 34.615 0.00 0.00 0.00 4.79
424 425 4.742012 AGAATAGAGATTTAGCCCCTCGA 58.258 43.478 0.00 0.00 32.52 4.04
426 427 1.710816 AGAGATTTAGCCCCTCGAGG 58.289 55.000 25.36 25.36 32.52 4.63
431 432 2.180159 TTTAGCCCCTCGAGGTGCAC 62.180 60.000 35.53 19.30 35.04 4.57
497 498 0.388649 CCGACCGAGAGACTGTTTGG 60.389 60.000 0.00 0.00 0.00 3.28
512 513 1.034838 TTTGGCCACAGTCCACACAC 61.035 55.000 3.88 0.00 32.45 3.82
555 556 4.577283 TGACATCGATGGTCAATACGAGTA 59.423 41.667 28.09 3.33 41.96 2.59
557 558 4.820173 ACATCGATGGTCAATACGAGTAGA 59.180 41.667 28.09 0.00 38.12 2.59
567 568 5.172771 GTCAATACGAGTAGACCAAATACGC 59.827 44.000 0.00 0.00 0.00 4.42
805 1229 3.000819 CGTCCACCAGGGCCTGTA 61.001 66.667 30.68 11.52 35.55 2.74
815 1370 5.013704 CCACCAGGGCCTGTATATATAAACA 59.986 44.000 30.68 0.00 0.00 2.83
858 1417 0.320421 CCCTCCCACACAACTACACG 60.320 60.000 0.00 0.00 0.00 4.49
883 1442 1.468565 CCAAACCATCTGCAAGCATCG 60.469 52.381 0.00 0.00 0.00 3.84
986 1572 2.158325 AGGAGAGGAGGAGCTGATAAGG 60.158 54.545 0.00 0.00 0.00 2.69
1143 1754 2.620242 GAGAGAAGAAGAAGGCTGCTG 58.380 52.381 0.00 0.00 27.48 4.41
1144 1755 1.085893 GAGAAGAAGAAGGCTGCTGC 58.914 55.000 7.10 7.10 38.76 5.25
1145 1756 0.691904 AGAAGAAGAAGGCTGCTGCT 59.308 50.000 15.64 0.00 39.59 4.24
1146 1757 0.803740 GAAGAAGAAGGCTGCTGCTG 59.196 55.000 2.85 0.77 39.59 4.41
1147 1758 0.608582 AAGAAGAAGGCTGCTGCTGG 60.609 55.000 2.85 0.00 39.59 4.85
1148 1759 2.675772 AAGAAGGCTGCTGCTGGC 60.676 61.111 22.47 22.47 39.59 4.85
1226 1837 2.139484 CCCCAAACCCAAAGCAGCA 61.139 57.895 0.00 0.00 0.00 4.41
1274 1894 0.748005 ACTGTATTCGCCATGCCACC 60.748 55.000 0.00 0.00 0.00 4.61
1312 1951 6.941189 CAGCTTTCTTCTAGCTAGGAGCGTA 61.941 48.000 22.62 8.84 46.80 4.42
1323 1964 3.243434 GCTAGGAGCGTATGTGTGTGTAT 60.243 47.826 0.00 0.00 0.00 2.29
1339 1980 6.910433 GTGTGTGTATGTTTGTTCTTTCGATT 59.090 34.615 0.00 0.00 0.00 3.34
1349 1994 6.712241 TTGTTCTTTCGATTAGCTTCTCTG 57.288 37.500 0.00 0.00 0.00 3.35
1350 1995 6.025749 TGTTCTTTCGATTAGCTTCTCTGA 57.974 37.500 0.00 0.00 0.00 3.27
1351 1996 6.096036 TGTTCTTTCGATTAGCTTCTCTGAG 58.904 40.000 0.00 0.00 0.00 3.35
1352 1997 5.255710 TCTTTCGATTAGCTTCTCTGAGG 57.744 43.478 4.59 0.00 0.00 3.86
1353 1998 3.444703 TTCGATTAGCTTCTCTGAGGC 57.555 47.619 4.59 1.19 34.80 4.70
1354 1999 1.683917 TCGATTAGCTTCTCTGAGGCC 59.316 52.381 4.59 0.00 35.17 5.19
1355 2000 1.410517 CGATTAGCTTCTCTGAGGCCA 59.589 52.381 5.01 0.00 35.17 5.36
1356 2001 2.159043 CGATTAGCTTCTCTGAGGCCAA 60.159 50.000 5.01 0.00 35.17 4.52
1357 2002 3.679917 CGATTAGCTTCTCTGAGGCCAAA 60.680 47.826 5.01 0.00 35.17 3.28
1358 2003 3.340814 TTAGCTTCTCTGAGGCCAAAG 57.659 47.619 5.01 0.98 35.17 2.77
1359 2004 1.356124 AGCTTCTCTGAGGCCAAAGA 58.644 50.000 5.01 6.35 35.17 2.52
1360 2005 1.701847 AGCTTCTCTGAGGCCAAAGAA 59.298 47.619 5.01 7.22 35.17 2.52
1361 2006 2.107204 AGCTTCTCTGAGGCCAAAGAAA 59.893 45.455 5.01 4.20 35.17 2.52
1362 2007 2.227626 GCTTCTCTGAGGCCAAAGAAAC 59.772 50.000 5.01 0.00 0.00 2.78
1363 2008 3.749226 CTTCTCTGAGGCCAAAGAAACT 58.251 45.455 5.01 0.00 0.00 2.66
1364 2009 3.864789 TCTCTGAGGCCAAAGAAACTT 57.135 42.857 5.01 0.00 0.00 2.66
1365 2010 4.170468 TCTCTGAGGCCAAAGAAACTTT 57.830 40.909 5.01 0.00 0.00 2.66
1366 2011 3.885297 TCTCTGAGGCCAAAGAAACTTTG 59.115 43.478 5.01 14.76 0.00 2.77
1367 2012 3.631250 TCTGAGGCCAAAGAAACTTTGT 58.369 40.909 18.51 5.00 0.00 2.83
1368 2013 3.381272 TCTGAGGCCAAAGAAACTTTGTG 59.619 43.478 18.51 12.77 0.00 3.33
1369 2014 3.096092 TGAGGCCAAAGAAACTTTGTGT 58.904 40.909 18.51 6.68 0.00 3.72
1370 2015 3.513515 TGAGGCCAAAGAAACTTTGTGTT 59.486 39.130 18.51 7.17 41.29 3.32
1371 2016 3.860641 AGGCCAAAGAAACTTTGTGTTG 58.139 40.909 18.51 8.06 39.13 3.33
1372 2017 2.935849 GGCCAAAGAAACTTTGTGTTGG 59.064 45.455 18.51 8.49 39.13 3.77
1373 2018 3.368948 GGCCAAAGAAACTTTGTGTTGGA 60.369 43.478 18.51 0.00 38.20 3.53
1374 2019 3.865164 GCCAAAGAAACTTTGTGTTGGAG 59.135 43.478 18.51 6.72 38.20 3.86
1375 2020 4.432712 CCAAAGAAACTTTGTGTTGGAGG 58.567 43.478 18.51 2.40 38.20 4.30
1376 2021 4.159506 CCAAAGAAACTTTGTGTTGGAGGA 59.840 41.667 18.51 0.00 38.20 3.71
1377 2022 5.343249 CAAAGAAACTTTGTGTTGGAGGAG 58.657 41.667 13.83 0.00 39.13 3.69
1378 2023 4.236527 AGAAACTTTGTGTTGGAGGAGT 57.763 40.909 0.00 0.00 39.13 3.85
1379 2024 3.947834 AGAAACTTTGTGTTGGAGGAGTG 59.052 43.478 0.00 0.00 39.13 3.51
1380 2025 3.366052 AACTTTGTGTTGGAGGAGTGT 57.634 42.857 0.00 0.00 37.52 3.55
1381 2026 2.643551 ACTTTGTGTTGGAGGAGTGTG 58.356 47.619 0.00 0.00 0.00 3.82
1382 2027 2.026262 ACTTTGTGTTGGAGGAGTGTGT 60.026 45.455 0.00 0.00 0.00 3.72
1383 2028 3.199071 ACTTTGTGTTGGAGGAGTGTGTA 59.801 43.478 0.00 0.00 0.00 2.90
1384 2029 3.916359 TTGTGTTGGAGGAGTGTGTAA 57.084 42.857 0.00 0.00 0.00 2.41
1385 2030 3.469008 TGTGTTGGAGGAGTGTGTAAG 57.531 47.619 0.00 0.00 0.00 2.34
1386 2031 2.769663 TGTGTTGGAGGAGTGTGTAAGT 59.230 45.455 0.00 0.00 0.00 2.24
1387 2032 3.181469 TGTGTTGGAGGAGTGTGTAAGTC 60.181 47.826 0.00 0.00 0.00 3.01
1388 2033 3.035363 TGTTGGAGGAGTGTGTAAGTCA 58.965 45.455 0.00 0.00 0.00 3.41
1389 2034 3.181469 TGTTGGAGGAGTGTGTAAGTCAC 60.181 47.826 0.00 0.00 46.31 3.67
1390 2035 2.958818 TGGAGGAGTGTGTAAGTCACT 58.041 47.619 0.00 0.00 46.86 3.41
1391 2036 2.628178 TGGAGGAGTGTGTAAGTCACTG 59.372 50.000 3.29 0.00 44.68 3.66
1392 2037 2.028930 GGAGGAGTGTGTAAGTCACTGG 60.029 54.545 3.29 0.00 44.68 4.00
1393 2038 1.344763 AGGAGTGTGTAAGTCACTGGC 59.655 52.381 3.29 0.00 44.68 4.85
1394 2039 1.344763 GGAGTGTGTAAGTCACTGGCT 59.655 52.381 3.29 0.00 44.68 4.75
1395 2040 2.408050 GAGTGTGTAAGTCACTGGCTG 58.592 52.381 3.29 0.00 44.68 4.85
1396 2041 1.762957 AGTGTGTAAGTCACTGGCTGT 59.237 47.619 0.00 0.00 46.27 4.40
1397 2042 2.963101 AGTGTGTAAGTCACTGGCTGTA 59.037 45.455 0.00 0.00 46.27 2.74
1398 2043 3.386726 AGTGTGTAAGTCACTGGCTGTAA 59.613 43.478 0.00 0.00 46.27 2.41
1399 2044 4.040461 AGTGTGTAAGTCACTGGCTGTAAT 59.960 41.667 0.00 0.00 46.27 1.89
1400 2045 4.152402 GTGTGTAAGTCACTGGCTGTAATG 59.848 45.833 0.00 0.00 46.27 1.90
1401 2046 4.202315 TGTGTAAGTCACTGGCTGTAATGT 60.202 41.667 0.00 0.00 46.27 2.71
1402 2047 4.755123 GTGTAAGTCACTGGCTGTAATGTT 59.245 41.667 0.00 0.00 43.13 2.71
1403 2048 5.238650 GTGTAAGTCACTGGCTGTAATGTTT 59.761 40.000 0.00 0.00 43.13 2.83
1404 2049 4.836125 AAGTCACTGGCTGTAATGTTTG 57.164 40.909 0.00 0.00 0.00 2.93
1405 2050 2.554032 AGTCACTGGCTGTAATGTTTGC 59.446 45.455 0.00 0.00 0.00 3.68
1406 2051 2.293122 GTCACTGGCTGTAATGTTTGCA 59.707 45.455 0.00 0.00 0.00 4.08
1407 2052 2.954989 TCACTGGCTGTAATGTTTGCAA 59.045 40.909 0.00 0.00 0.00 4.08
1408 2053 3.004629 TCACTGGCTGTAATGTTTGCAAG 59.995 43.478 0.00 0.00 33.06 4.01
1409 2054 2.958355 ACTGGCTGTAATGTTTGCAAGT 59.042 40.909 0.00 0.00 35.14 3.16
1410 2055 3.384467 ACTGGCTGTAATGTTTGCAAGTT 59.616 39.130 0.00 0.00 36.40 2.66
1411 2056 3.715495 TGGCTGTAATGTTTGCAAGTTG 58.285 40.909 0.00 0.00 0.00 3.16
1412 2057 3.131933 TGGCTGTAATGTTTGCAAGTTGT 59.868 39.130 4.48 0.00 0.00 3.32
1413 2058 4.119136 GGCTGTAATGTTTGCAAGTTGTT 58.881 39.130 4.48 0.00 0.00 2.83
1414 2059 4.570369 GGCTGTAATGTTTGCAAGTTGTTT 59.430 37.500 4.48 0.00 0.00 2.83
1415 2060 5.064579 GGCTGTAATGTTTGCAAGTTGTTTT 59.935 36.000 4.48 0.00 0.00 2.43
1416 2061 5.958949 GCTGTAATGTTTGCAAGTTGTTTTG 59.041 36.000 4.48 0.00 0.00 2.44
1417 2062 6.402011 GCTGTAATGTTTGCAAGTTGTTTTGT 60.402 34.615 4.48 0.00 0.00 2.83
1418 2063 7.426929 TGTAATGTTTGCAAGTTGTTTTGTT 57.573 28.000 4.48 0.00 0.00 2.83
1419 2064 7.513968 TGTAATGTTTGCAAGTTGTTTTGTTC 58.486 30.769 4.48 0.00 0.00 3.18
1420 2065 6.551385 AATGTTTGCAAGTTGTTTTGTTCA 57.449 29.167 4.48 0.00 0.00 3.18
1421 2066 6.740411 ATGTTTGCAAGTTGTTTTGTTCAT 57.260 29.167 4.48 0.00 0.00 2.57
1422 2067 6.551385 TGTTTGCAAGTTGTTTTGTTCATT 57.449 29.167 4.48 0.00 0.00 2.57
1423 2068 6.369005 TGTTTGCAAGTTGTTTTGTTCATTG 58.631 32.000 4.48 0.00 0.00 2.82
1424 2069 5.542616 TTGCAAGTTGTTTTGTTCATTGG 57.457 34.783 4.48 0.00 0.00 3.16
1425 2070 4.573900 TGCAAGTTGTTTTGTTCATTGGT 58.426 34.783 4.48 0.00 0.00 3.67
1426 2071 4.999950 TGCAAGTTGTTTTGTTCATTGGTT 59.000 33.333 4.48 0.00 0.00 3.67
1427 2072 5.121454 TGCAAGTTGTTTTGTTCATTGGTTC 59.879 36.000 4.48 0.00 0.00 3.62
1428 2073 5.121454 GCAAGTTGTTTTGTTCATTGGTTCA 59.879 36.000 4.48 0.00 0.00 3.18
1429 2074 6.348050 GCAAGTTGTTTTGTTCATTGGTTCAA 60.348 34.615 4.48 0.00 0.00 2.69
1430 2075 7.579726 CAAGTTGTTTTGTTCATTGGTTCAAA 58.420 30.769 0.00 0.00 0.00 2.69
1431 2076 7.920160 AGTTGTTTTGTTCATTGGTTCAAAT 57.080 28.000 0.00 0.00 31.45 2.32
1432 2077 9.442047 AAGTTGTTTTGTTCATTGGTTCAAATA 57.558 25.926 0.00 0.00 31.45 1.40
1433 2078 9.442047 AGTTGTTTTGTTCATTGGTTCAAATAA 57.558 25.926 0.00 0.00 31.45 1.40
1436 2081 9.442047 TGTTTTGTTCATTGGTTCAAATAAAGT 57.558 25.926 0.00 0.00 31.45 2.66
1439 2084 9.658799 TTTGTTCATTGGTTCAAATAAAGTTGA 57.341 25.926 0.00 0.00 35.72 3.18
1440 2085 8.641499 TGTTCATTGGTTCAAATAAAGTTGAC 57.359 30.769 0.00 0.00 37.24 3.18
1441 2086 8.253810 TGTTCATTGGTTCAAATAAAGTTGACA 58.746 29.630 0.00 0.00 37.24 3.58
1442 2087 9.092876 GTTCATTGGTTCAAATAAAGTTGACAA 57.907 29.630 0.00 0.00 37.24 3.18
1443 2088 9.658799 TTCATTGGTTCAAATAAAGTTGACAAA 57.341 25.926 0.00 0.00 37.24 2.83
1444 2089 9.658799 TCATTGGTTCAAATAAAGTTGACAAAA 57.341 25.926 0.00 0.00 37.24 2.44
1466 2111 5.733620 AAAATGAATCACAATCCAGCACT 57.266 34.783 0.00 0.00 0.00 4.40
1467 2112 6.839124 AAAATGAATCACAATCCAGCACTA 57.161 33.333 0.00 0.00 0.00 2.74
1468 2113 6.839124 AAATGAATCACAATCCAGCACTAA 57.161 33.333 0.00 0.00 0.00 2.24
1469 2114 7.414222 AAATGAATCACAATCCAGCACTAAT 57.586 32.000 0.00 0.00 0.00 1.73
1470 2115 7.414222 AATGAATCACAATCCAGCACTAATT 57.586 32.000 0.00 0.00 0.00 1.40
1471 2116 6.198650 TGAATCACAATCCAGCACTAATTG 57.801 37.500 0.00 0.00 36.64 2.32
1472 2117 5.945191 TGAATCACAATCCAGCACTAATTGA 59.055 36.000 10.33 0.00 35.03 2.57
1473 2118 6.094464 TGAATCACAATCCAGCACTAATTGAG 59.906 38.462 10.33 4.80 35.03 3.02
1474 2119 4.910195 TCACAATCCAGCACTAATTGAGT 58.090 39.130 10.33 0.00 39.82 3.41
1475 2120 5.316167 TCACAATCCAGCACTAATTGAGTT 58.684 37.500 10.33 0.00 35.64 3.01
1476 2121 6.472016 TCACAATCCAGCACTAATTGAGTTA 58.528 36.000 10.33 0.00 35.64 2.24
1477 2122 6.595326 TCACAATCCAGCACTAATTGAGTTAG 59.405 38.462 10.33 0.00 44.41 2.34
1478 2123 6.595326 CACAATCCAGCACTAATTGAGTTAGA 59.405 38.462 1.52 0.00 41.99 2.10
1479 2124 6.595716 ACAATCCAGCACTAATTGAGTTAGAC 59.404 38.462 1.52 0.00 41.99 2.59
1523 2168 3.202595 AGTGTTCCTACTCCTCCGTAGAT 59.797 47.826 0.00 0.00 39.33 1.98
1531 2176 2.490148 CCTCCGTAGATGAGCCGCA 61.490 63.158 0.00 0.00 0.00 5.69
1610 2256 0.820891 TCGCTAGGATACGGTGGGAC 60.821 60.000 0.00 0.00 46.39 4.46
1620 2266 2.526888 ACGGTGGGACAAGAGATAGA 57.473 50.000 0.00 0.00 44.16 1.98
1808 2457 7.619964 TCTTTGGAAGGAATAAAACGTATCC 57.380 36.000 0.00 0.00 0.00 2.59
1859 2508 8.689251 TCGTACAAAATGAAAGTCTATCTCAG 57.311 34.615 0.00 0.00 0.00 3.35
2037 2686 3.914312 TGTACTCAGCTTCAGTACTTGC 58.086 45.455 23.98 0.00 44.54 4.01
2133 2784 6.988580 TGTAGATTTTCTATCATCACTGCAGG 59.011 38.462 19.93 7.28 30.76 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.883142 ACAAATAACAGATTTTCAGGAAACAAA 57.117 25.926 0.00 0.00 0.00 2.83
52 53 9.883142 AACAAATAACAGATTTTCAGGAAACAA 57.117 25.926 0.00 0.00 0.00 2.83
53 54 9.883142 AAACAAATAACAGATTTTCAGGAAACA 57.117 25.926 0.00 0.00 0.00 2.83
55 56 9.541143 GGAAACAAATAACAGATTTTCAGGAAA 57.459 29.630 0.00 0.00 0.00 3.13
56 57 8.923270 AGGAAACAAATAACAGATTTTCAGGAA 58.077 29.630 0.00 0.00 0.00 3.36
57 58 8.477419 AGGAAACAAATAACAGATTTTCAGGA 57.523 30.769 0.00 0.00 0.00 3.86
66 67 9.403583 AGTTTGTCTTAGGAAACAAATAACAGA 57.596 29.630 4.22 0.00 44.54 3.41
67 68 9.450807 CAGTTTGTCTTAGGAAACAAATAACAG 57.549 33.333 4.22 0.00 44.54 3.16
68 69 9.179909 TCAGTTTGTCTTAGGAAACAAATAACA 57.820 29.630 4.22 0.00 44.54 2.41
71 72 8.626526 GGTTCAGTTTGTCTTAGGAAACAAATA 58.373 33.333 4.22 0.00 44.54 1.40
72 73 7.123547 TGGTTCAGTTTGTCTTAGGAAACAAAT 59.876 33.333 4.22 0.00 44.54 2.32
73 74 6.434652 TGGTTCAGTTTGTCTTAGGAAACAAA 59.565 34.615 9.34 3.09 41.67 2.83
74 75 5.946972 TGGTTCAGTTTGTCTTAGGAAACAA 59.053 36.000 9.34 0.00 35.00 2.83
75 76 5.502079 TGGTTCAGTTTGTCTTAGGAAACA 58.498 37.500 9.34 0.00 35.00 2.83
76 77 6.445357 TTGGTTCAGTTTGTCTTAGGAAAC 57.555 37.500 0.00 0.00 33.11 2.78
77 78 8.754991 TTATTGGTTCAGTTTGTCTTAGGAAA 57.245 30.769 0.00 0.00 0.00 3.13
78 79 8.754991 TTTATTGGTTCAGTTTGTCTTAGGAA 57.245 30.769 0.00 0.00 0.00 3.36
79 80 8.754991 TTTTATTGGTTCAGTTTGTCTTAGGA 57.245 30.769 0.00 0.00 0.00 2.94
80 81 8.082242 CCTTTTATTGGTTCAGTTTGTCTTAGG 58.918 37.037 0.00 0.00 0.00 2.69
81 82 8.846211 TCCTTTTATTGGTTCAGTTTGTCTTAG 58.154 33.333 0.00 0.00 0.00 2.18
82 83 8.754991 TCCTTTTATTGGTTCAGTTTGTCTTA 57.245 30.769 0.00 0.00 0.00 2.10
83 84 7.654022 TCCTTTTATTGGTTCAGTTTGTCTT 57.346 32.000 0.00 0.00 0.00 3.01
84 85 7.654022 TTCCTTTTATTGGTTCAGTTTGTCT 57.346 32.000 0.00 0.00 0.00 3.41
85 86 7.326063 CGATTCCTTTTATTGGTTCAGTTTGTC 59.674 37.037 0.00 0.00 0.00 3.18
86 87 7.013846 TCGATTCCTTTTATTGGTTCAGTTTGT 59.986 33.333 0.00 0.00 0.00 2.83
87 88 7.367285 TCGATTCCTTTTATTGGTTCAGTTTG 58.633 34.615 0.00 0.00 0.00 2.93
88 89 7.519032 TCGATTCCTTTTATTGGTTCAGTTT 57.481 32.000 0.00 0.00 0.00 2.66
89 90 7.703058 ATCGATTCCTTTTATTGGTTCAGTT 57.297 32.000 0.00 0.00 0.00 3.16
90 91 7.393234 TCAATCGATTCCTTTTATTGGTTCAGT 59.607 33.333 7.92 0.00 0.00 3.41
91 92 7.761409 TCAATCGATTCCTTTTATTGGTTCAG 58.239 34.615 7.92 0.00 0.00 3.02
92 93 7.695480 TCAATCGATTCCTTTTATTGGTTCA 57.305 32.000 7.92 0.00 0.00 3.18
93 94 9.586435 AAATCAATCGATTCCTTTTATTGGTTC 57.414 29.630 7.92 0.00 41.12 3.62
94 95 9.369904 CAAATCAATCGATTCCTTTTATTGGTT 57.630 29.630 7.92 0.00 41.12 3.67
95 96 7.492344 GCAAATCAATCGATTCCTTTTATTGGT 59.508 33.333 7.92 0.00 41.12 3.67
96 97 7.492020 TGCAAATCAATCGATTCCTTTTATTGG 59.508 33.333 7.92 1.25 41.12 3.16
97 98 8.410030 TGCAAATCAATCGATTCCTTTTATTG 57.590 30.769 7.92 8.01 41.12 1.90
101 102 9.603921 AATTATGCAAATCAATCGATTCCTTTT 57.396 25.926 7.92 5.75 41.12 2.27
102 103 9.603921 AAATTATGCAAATCAATCGATTCCTTT 57.396 25.926 7.92 8.03 41.12 3.11
175 176 9.883142 ACAAATAACAGATTTTCAGGAAACAAA 57.117 25.926 0.00 0.00 0.00 2.83
176 177 9.883142 AACAAATAACAGATTTTCAGGAAACAA 57.117 25.926 0.00 0.00 0.00 2.83
177 178 9.883142 AAACAAATAACAGATTTTCAGGAAACA 57.117 25.926 0.00 0.00 0.00 2.83
179 180 9.541143 GGAAACAAATAACAGATTTTCAGGAAA 57.459 29.630 0.00 0.00 0.00 3.13
180 181 8.923270 AGGAAACAAATAACAGATTTTCAGGAA 58.077 29.630 0.00 0.00 0.00 3.36
181 182 8.477419 AGGAAACAAATAACAGATTTTCAGGA 57.523 30.769 0.00 0.00 0.00 3.86
197 198 7.841956 TGGTTCAATTTGTCTTAGGAAACAAA 58.158 30.769 3.45 3.45 46.16 2.83
198 199 7.411486 TGGTTCAATTTGTCTTAGGAAACAA 57.589 32.000 0.00 0.00 29.84 2.83
199 200 7.411486 TTGGTTCAATTTGTCTTAGGAAACA 57.589 32.000 0.00 0.00 30.79 2.83
200 201 9.974980 TTATTGGTTCAATTTGTCTTAGGAAAC 57.025 29.630 0.00 0.00 35.54 2.78
204 205 9.423061 CCTTTTATTGGTTCAATTTGTCTTAGG 57.577 33.333 0.00 0.00 35.54 2.69
208 209 9.710900 GATTCCTTTTATTGGTTCAATTTGTCT 57.289 29.630 0.00 0.00 35.54 3.41
209 210 8.647226 CGATTCCTTTTATTGGTTCAATTTGTC 58.353 33.333 0.00 0.00 35.54 3.18
210 211 8.364142 TCGATTCCTTTTATTGGTTCAATTTGT 58.636 29.630 0.00 0.00 35.54 2.83
211 212 8.755696 TCGATTCCTTTTATTGGTTCAATTTG 57.244 30.769 0.00 0.00 35.54 2.32
212 213 9.942850 AATCGATTCCTTTTATTGGTTCAATTT 57.057 25.926 4.39 0.00 35.54 1.82
213 214 9.369904 CAATCGATTCCTTTTATTGGTTCAATT 57.630 29.630 7.92 0.00 35.54 2.32
214 215 8.748412 TCAATCGATTCCTTTTATTGGTTCAAT 58.252 29.630 7.92 0.00 37.80 2.57
215 216 8.116651 TCAATCGATTCCTTTTATTGGTTCAA 57.883 30.769 7.92 0.00 0.00 2.69
216 217 7.695480 TCAATCGATTCCTTTTATTGGTTCA 57.305 32.000 7.92 0.00 0.00 3.18
217 218 9.586435 AAATCAATCGATTCCTTTTATTGGTTC 57.414 29.630 7.92 0.00 41.12 3.62
218 219 9.369904 CAAATCAATCGATTCCTTTTATTGGTT 57.630 29.630 7.92 0.00 41.12 3.67
219 220 7.492344 GCAAATCAATCGATTCCTTTTATTGGT 59.508 33.333 7.92 0.00 41.12 3.67
220 221 7.492020 TGCAAATCAATCGATTCCTTTTATTGG 59.508 33.333 7.92 1.25 41.12 3.16
221 222 8.410030 TGCAAATCAATCGATTCCTTTTATTG 57.590 30.769 7.92 8.01 41.12 1.90
225 226 9.603921 AATTATGCAAATCAATCGATTCCTTTT 57.396 25.926 7.92 5.75 41.12 2.27
226 227 9.603921 AAATTATGCAAATCAATCGATTCCTTT 57.396 25.926 7.92 8.03 41.12 3.11
233 234 9.734620 CTTCCTTAAATTATGCAAATCAATCGA 57.265 29.630 0.00 0.00 0.00 3.59
234 235 9.520204 ACTTCCTTAAATTATGCAAATCAATCG 57.480 29.630 0.00 0.00 0.00 3.34
242 243 8.836413 CGGATCTAACTTCCTTAAATTATGCAA 58.164 33.333 0.00 0.00 0.00 4.08
243 244 7.990886 ACGGATCTAACTTCCTTAAATTATGCA 59.009 33.333 0.00 0.00 0.00 3.96
244 245 8.283291 CACGGATCTAACTTCCTTAAATTATGC 58.717 37.037 0.00 0.00 0.00 3.14
245 246 9.542462 TCACGGATCTAACTTCCTTAAATTATG 57.458 33.333 0.00 0.00 0.00 1.90
248 249 9.462606 AAATCACGGATCTAACTTCCTTAAATT 57.537 29.630 0.00 0.00 0.00 1.82
249 250 8.893727 CAAATCACGGATCTAACTTCCTTAAAT 58.106 33.333 0.00 0.00 0.00 1.40
250 251 7.881232 ACAAATCACGGATCTAACTTCCTTAAA 59.119 33.333 0.00 0.00 0.00 1.52
251 252 7.391620 ACAAATCACGGATCTAACTTCCTTAA 58.608 34.615 0.00 0.00 0.00 1.85
252 253 6.942976 ACAAATCACGGATCTAACTTCCTTA 58.057 36.000 0.00 0.00 0.00 2.69
253 254 5.805728 ACAAATCACGGATCTAACTTCCTT 58.194 37.500 0.00 0.00 0.00 3.36
254 255 5.422214 ACAAATCACGGATCTAACTTCCT 57.578 39.130 0.00 0.00 0.00 3.36
255 256 7.787725 ATAACAAATCACGGATCTAACTTCC 57.212 36.000 0.00 0.00 0.00 3.46
256 257 8.477709 CGTATAACAAATCACGGATCTAACTTC 58.522 37.037 0.00 0.00 0.00 3.01
257 258 7.977853 ACGTATAACAAATCACGGATCTAACTT 59.022 33.333 0.00 0.00 38.67 2.66
258 259 7.486647 ACGTATAACAAATCACGGATCTAACT 58.513 34.615 0.00 0.00 38.67 2.24
259 260 7.689953 ACGTATAACAAATCACGGATCTAAC 57.310 36.000 0.00 0.00 38.67 2.34
260 261 7.166307 CGAACGTATAACAAATCACGGATCTAA 59.834 37.037 0.00 0.00 38.67 2.10
261 262 6.634035 CGAACGTATAACAAATCACGGATCTA 59.366 38.462 0.00 0.00 38.67 1.98
262 263 5.457799 CGAACGTATAACAAATCACGGATCT 59.542 40.000 0.00 0.00 38.67 2.75
263 264 5.456497 TCGAACGTATAACAAATCACGGATC 59.544 40.000 0.00 0.00 38.67 3.36
264 265 5.342433 TCGAACGTATAACAAATCACGGAT 58.658 37.500 0.00 0.00 38.67 4.18
265 266 4.731720 TCGAACGTATAACAAATCACGGA 58.268 39.130 0.00 0.00 38.67 4.69
266 267 5.286797 TCTTCGAACGTATAACAAATCACGG 59.713 40.000 0.00 0.00 38.67 4.94
267 268 6.033196 ACTCTTCGAACGTATAACAAATCACG 59.967 38.462 0.00 0.00 40.15 4.35
268 269 7.164858 CACTCTTCGAACGTATAACAAATCAC 58.835 38.462 0.00 0.00 0.00 3.06
269 270 6.309494 CCACTCTTCGAACGTATAACAAATCA 59.691 38.462 0.00 0.00 0.00 2.57
270 271 6.529125 TCCACTCTTCGAACGTATAACAAATC 59.471 38.462 0.00 0.00 0.00 2.17
271 272 6.392354 TCCACTCTTCGAACGTATAACAAAT 58.608 36.000 0.00 0.00 0.00 2.32
272 273 5.771469 TCCACTCTTCGAACGTATAACAAA 58.229 37.500 0.00 0.00 0.00 2.83
273 274 5.181811 TCTCCACTCTTCGAACGTATAACAA 59.818 40.000 0.00 0.00 0.00 2.83
274 275 4.696877 TCTCCACTCTTCGAACGTATAACA 59.303 41.667 0.00 0.00 0.00 2.41
275 276 5.064452 TCTCTCCACTCTTCGAACGTATAAC 59.936 44.000 0.00 0.00 0.00 1.89
276 277 5.181009 TCTCTCCACTCTTCGAACGTATAA 58.819 41.667 0.00 0.00 0.00 0.98
277 278 4.763073 TCTCTCCACTCTTCGAACGTATA 58.237 43.478 0.00 0.00 0.00 1.47
278 279 3.607741 TCTCTCCACTCTTCGAACGTAT 58.392 45.455 0.00 0.00 0.00 3.06
279 280 3.049708 TCTCTCCACTCTTCGAACGTA 57.950 47.619 0.00 0.00 0.00 3.57
280 281 1.893544 TCTCTCCACTCTTCGAACGT 58.106 50.000 0.00 0.00 0.00 3.99
281 282 2.991434 TTCTCTCCACTCTTCGAACG 57.009 50.000 0.00 0.00 0.00 3.95
282 283 7.653767 TTATTTTTCTCTCCACTCTTCGAAC 57.346 36.000 0.00 0.00 0.00 3.95
283 284 8.848474 ATTTATTTTTCTCTCCACTCTTCGAA 57.152 30.769 0.00 0.00 0.00 3.71
284 285 8.721478 CAATTTATTTTTCTCTCCACTCTTCGA 58.279 33.333 0.00 0.00 0.00 3.71
285 286 8.721478 TCAATTTATTTTTCTCTCCACTCTTCG 58.279 33.333 0.00 0.00 0.00 3.79
288 289 8.964772 CCATCAATTTATTTTTCTCTCCACTCT 58.035 33.333 0.00 0.00 0.00 3.24
289 290 8.960591 TCCATCAATTTATTTTTCTCTCCACTC 58.039 33.333 0.00 0.00 0.00 3.51
290 291 8.743714 GTCCATCAATTTATTTTTCTCTCCACT 58.256 33.333 0.00 0.00 0.00 4.00
291 292 7.976175 GGTCCATCAATTTATTTTTCTCTCCAC 59.024 37.037 0.00 0.00 0.00 4.02
292 293 7.673504 TGGTCCATCAATTTATTTTTCTCTCCA 59.326 33.333 0.00 0.00 0.00 3.86
293 294 8.066612 TGGTCCATCAATTTATTTTTCTCTCC 57.933 34.615 0.00 0.00 0.00 3.71
294 295 8.193438 CCTGGTCCATCAATTTATTTTTCTCTC 58.807 37.037 0.00 0.00 0.00 3.20
295 296 7.895429 TCCTGGTCCATCAATTTATTTTTCTCT 59.105 33.333 0.00 0.00 0.00 3.10
296 297 8.066612 TCCTGGTCCATCAATTTATTTTTCTC 57.933 34.615 0.00 0.00 0.00 2.87
297 298 8.480501 CATCCTGGTCCATCAATTTATTTTTCT 58.519 33.333 0.00 0.00 0.00 2.52
298 299 7.712205 CCATCCTGGTCCATCAATTTATTTTTC 59.288 37.037 0.00 0.00 31.35 2.29
299 300 7.365831 CCCATCCTGGTCCATCAATTTATTTTT 60.366 37.037 0.00 0.00 35.17 1.94
300 301 6.100134 CCCATCCTGGTCCATCAATTTATTTT 59.900 38.462 0.00 0.00 35.17 1.82
301 302 5.603813 CCCATCCTGGTCCATCAATTTATTT 59.396 40.000 0.00 0.00 35.17 1.40
302 303 5.103129 TCCCATCCTGGTCCATCAATTTATT 60.103 40.000 0.00 0.00 35.17 1.40
303 304 4.419875 TCCCATCCTGGTCCATCAATTTAT 59.580 41.667 0.00 0.00 35.17 1.40
304 305 3.790976 TCCCATCCTGGTCCATCAATTTA 59.209 43.478 0.00 0.00 35.17 1.40
305 306 2.586838 TCCCATCCTGGTCCATCAATTT 59.413 45.455 0.00 0.00 35.17 1.82
306 307 2.176364 CTCCCATCCTGGTCCATCAATT 59.824 50.000 0.00 0.00 35.17 2.32
307 308 1.779092 CTCCCATCCTGGTCCATCAAT 59.221 52.381 0.00 0.00 35.17 2.57
308 309 1.216064 CTCCCATCCTGGTCCATCAA 58.784 55.000 0.00 0.00 35.17 2.57
309 310 0.695462 CCTCCCATCCTGGTCCATCA 60.695 60.000 0.00 0.00 35.17 3.07
310 311 1.422161 CCCTCCCATCCTGGTCCATC 61.422 65.000 0.00 0.00 35.17 3.51
311 312 1.386485 CCCTCCCATCCTGGTCCAT 60.386 63.158 0.00 0.00 35.17 3.41
312 313 2.042762 CCCTCCCATCCTGGTCCA 59.957 66.667 0.00 0.00 35.17 4.02
313 314 2.644628 ATCCCCTCCCATCCTGGTCC 62.645 65.000 0.00 0.00 35.17 4.46
314 315 1.073397 ATCCCCTCCCATCCTGGTC 60.073 63.158 0.00 0.00 35.17 4.02
315 316 1.386485 CATCCCCTCCCATCCTGGT 60.386 63.158 0.00 0.00 35.17 4.00
316 317 2.158810 CCATCCCCTCCCATCCTGG 61.159 68.421 0.00 0.00 37.25 4.45
317 318 0.104462 TACCATCCCCTCCCATCCTG 60.104 60.000 0.00 0.00 0.00 3.86
318 319 0.194587 CTACCATCCCCTCCCATCCT 59.805 60.000 0.00 0.00 0.00 3.24
319 320 0.842467 CCTACCATCCCCTCCCATCC 60.842 65.000 0.00 0.00 0.00 3.51
320 321 0.193574 TCCTACCATCCCCTCCCATC 59.806 60.000 0.00 0.00 0.00 3.51
321 322 0.194587 CTCCTACCATCCCCTCCCAT 59.805 60.000 0.00 0.00 0.00 4.00
322 323 1.632164 CTCCTACCATCCCCTCCCA 59.368 63.158 0.00 0.00 0.00 4.37
323 324 1.152008 CCTCCTACCATCCCCTCCC 60.152 68.421 0.00 0.00 0.00 4.30
324 325 0.178918 CTCCTCCTACCATCCCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
325 326 0.861155 TCTCCTCCTACCATCCCCTC 59.139 60.000 0.00 0.00 0.00 4.30
326 327 0.863956 CTCTCCTCCTACCATCCCCT 59.136 60.000 0.00 0.00 0.00 4.79
327 328 0.861155 TCTCTCCTCCTACCATCCCC 59.139 60.000 0.00 0.00 0.00 4.81
328 329 1.820090 CGTCTCTCCTCCTACCATCCC 60.820 61.905 0.00 0.00 0.00 3.85
329 330 1.143277 TCGTCTCTCCTCCTACCATCC 59.857 57.143 0.00 0.00 0.00 3.51
330 331 2.642154 TCGTCTCTCCTCCTACCATC 57.358 55.000 0.00 0.00 0.00 3.51
331 332 3.383698 TTTCGTCTCTCCTCCTACCAT 57.616 47.619 0.00 0.00 0.00 3.55
332 333 2.893215 TTTCGTCTCTCCTCCTACCA 57.107 50.000 0.00 0.00 0.00 3.25
352 353 3.491639 GCGGTTTATTTTCGCTGGTTTTT 59.508 39.130 0.00 0.00 45.16 1.94
353 354 3.054166 GCGGTTTATTTTCGCTGGTTTT 58.946 40.909 0.00 0.00 45.16 2.43
354 355 2.668250 GCGGTTTATTTTCGCTGGTTT 58.332 42.857 0.00 0.00 45.16 3.27
355 356 1.400500 CGCGGTTTATTTTCGCTGGTT 60.400 47.619 0.00 0.00 46.23 3.67
356 357 0.167251 CGCGGTTTATTTTCGCTGGT 59.833 50.000 0.00 0.00 46.23 4.00
357 358 0.522495 CCGCGGTTTATTTTCGCTGG 60.522 55.000 19.50 0.00 46.23 4.85
358 359 0.444651 TCCGCGGTTTATTTTCGCTG 59.555 50.000 27.15 0.00 46.23 5.18
359 360 0.725117 CTCCGCGGTTTATTTTCGCT 59.275 50.000 27.15 0.00 46.23 4.93
360 361 0.722848 TCTCCGCGGTTTATTTTCGC 59.277 50.000 27.15 0.00 45.15 4.70
361 362 1.266696 CGTCTCCGCGGTTTATTTTCG 60.267 52.381 27.15 14.89 0.00 3.46
362 363 1.994779 TCGTCTCCGCGGTTTATTTTC 59.005 47.619 27.15 7.31 0.00 2.29
363 364 2.083167 TCGTCTCCGCGGTTTATTTT 57.917 45.000 27.15 0.00 0.00 1.82
364 365 2.304751 ATCGTCTCCGCGGTTTATTT 57.695 45.000 27.15 4.71 0.00 1.40
365 366 2.199236 GAATCGTCTCCGCGGTTTATT 58.801 47.619 27.15 17.67 35.12 1.40
366 367 1.135527 TGAATCGTCTCCGCGGTTTAT 59.864 47.619 27.15 10.05 35.12 1.40
367 368 0.527113 TGAATCGTCTCCGCGGTTTA 59.473 50.000 27.15 9.02 35.12 2.01
368 369 1.012486 GTGAATCGTCTCCGCGGTTT 61.012 55.000 27.15 10.21 35.12 3.27
369 370 1.445582 GTGAATCGTCTCCGCGGTT 60.446 57.895 27.15 11.07 37.96 4.44
370 371 2.181021 GTGAATCGTCTCCGCGGT 59.819 61.111 27.15 2.66 0.00 5.68
371 372 2.582498 GGTGAATCGTCTCCGCGG 60.582 66.667 22.12 22.12 0.00 6.46
372 373 1.445410 TTGGTGAATCGTCTCCGCG 60.445 57.895 0.00 0.00 39.83 6.46
373 374 0.389948 AGTTGGTGAATCGTCTCCGC 60.390 55.000 0.00 0.00 39.83 5.54
374 375 1.630148 GAGTTGGTGAATCGTCTCCG 58.370 55.000 0.00 0.00 39.83 4.63
375 376 1.067776 ACGAGTTGGTGAATCGTCTCC 60.068 52.381 0.00 0.00 45.92 3.71
376 377 2.349297 ACGAGTTGGTGAATCGTCTC 57.651 50.000 0.00 0.00 45.92 3.36
380 381 5.347635 TCTTAATGAACGAGTTGGTGAATCG 59.652 40.000 0.00 0.00 42.04 3.34
381 382 6.721571 TCTTAATGAACGAGTTGGTGAATC 57.278 37.500 0.00 0.00 0.00 2.52
382 383 7.687941 ATTCTTAATGAACGAGTTGGTGAAT 57.312 32.000 0.00 0.00 37.52 2.57
383 384 8.092068 TCTATTCTTAATGAACGAGTTGGTGAA 58.908 33.333 0.00 0.00 37.52 3.18
384 385 7.608153 TCTATTCTTAATGAACGAGTTGGTGA 58.392 34.615 0.00 0.00 37.52 4.02
385 386 7.759886 TCTCTATTCTTAATGAACGAGTTGGTG 59.240 37.037 0.00 0.00 37.52 4.17
386 387 7.837863 TCTCTATTCTTAATGAACGAGTTGGT 58.162 34.615 0.00 0.00 37.52 3.67
387 388 8.879342 ATCTCTATTCTTAATGAACGAGTTGG 57.121 34.615 0.00 0.00 37.52 3.77
392 393 9.477484 GGCTAAATCTCTATTCTTAATGAACGA 57.523 33.333 0.00 0.00 37.52 3.85
393 394 8.713271 GGGCTAAATCTCTATTCTTAATGAACG 58.287 37.037 0.00 0.00 37.52 3.95
394 395 9.004717 GGGGCTAAATCTCTATTCTTAATGAAC 57.995 37.037 0.00 0.00 37.52 3.18
395 396 8.949421 AGGGGCTAAATCTCTATTCTTAATGAA 58.051 33.333 0.00 0.00 39.24 2.57
396 397 8.511748 AGGGGCTAAATCTCTATTCTTAATGA 57.488 34.615 0.00 0.00 0.00 2.57
397 398 7.547370 CGAGGGGCTAAATCTCTATTCTTAATG 59.453 40.741 0.00 0.00 0.00 1.90
398 399 7.455008 TCGAGGGGCTAAATCTCTATTCTTAAT 59.545 37.037 0.00 0.00 0.00 1.40
399 400 6.781014 TCGAGGGGCTAAATCTCTATTCTTAA 59.219 38.462 0.00 0.00 0.00 1.85
400 401 6.312529 TCGAGGGGCTAAATCTCTATTCTTA 58.687 40.000 0.00 0.00 0.00 2.10
401 402 5.148502 TCGAGGGGCTAAATCTCTATTCTT 58.851 41.667 0.00 0.00 0.00 2.52
402 403 4.742012 TCGAGGGGCTAAATCTCTATTCT 58.258 43.478 0.00 0.00 0.00 2.40
403 404 4.081917 CCTCGAGGGGCTAAATCTCTATTC 60.082 50.000 24.62 0.00 0.00 1.75
404 405 3.835395 CCTCGAGGGGCTAAATCTCTATT 59.165 47.826 24.62 0.00 0.00 1.73
405 406 3.181416 ACCTCGAGGGGCTAAATCTCTAT 60.181 47.826 34.04 6.01 40.27 1.98
406 407 2.177233 ACCTCGAGGGGCTAAATCTCTA 59.823 50.000 34.04 0.00 40.27 2.43
407 408 1.062810 ACCTCGAGGGGCTAAATCTCT 60.063 52.381 34.04 6.70 40.27 3.10
408 409 1.069358 CACCTCGAGGGGCTAAATCTC 59.931 57.143 34.04 0.00 40.27 2.75
409 410 1.123928 CACCTCGAGGGGCTAAATCT 58.876 55.000 34.04 8.06 40.27 2.40
410 411 3.688553 CACCTCGAGGGGCTAAATC 57.311 57.895 34.04 0.00 40.27 2.17
417 418 3.649277 CTTCGTGCACCTCGAGGGG 62.649 68.421 34.04 32.24 43.01 4.79
421 422 1.289066 CTTCCTTCGTGCACCTCGA 59.711 57.895 12.15 1.88 35.50 4.04
424 425 1.071471 CCACTTCCTTCGTGCACCT 59.929 57.895 12.15 0.00 0.00 4.00
426 427 0.033504 TCTCCACTTCCTTCGTGCAC 59.966 55.000 6.82 6.82 0.00 4.57
431 432 2.224305 ACCACTTTCTCCACTTCCTTCG 60.224 50.000 0.00 0.00 0.00 3.79
478 479 0.388649 CCAAACAGTCTCTCGGTCGG 60.389 60.000 0.00 0.00 0.00 4.79
482 483 0.951040 GTGGCCAAACAGTCTCTCGG 60.951 60.000 7.24 0.00 0.00 4.63
485 486 3.713902 CTGTGGCCAAACAGTCTCT 57.286 52.632 7.24 0.00 42.21 3.10
497 498 1.301716 ATCGTGTGTGGACTGTGGC 60.302 57.895 0.00 0.00 0.00 5.01
512 513 4.957684 AGGGCTCGCATCGCATCG 62.958 66.667 0.00 0.00 0.00 3.84
550 551 2.190981 GGTGCGTATTTGGTCTACTCG 58.809 52.381 0.00 0.00 0.00 4.18
555 556 1.404583 GGTACGGTGCGTATTTGGTCT 60.405 52.381 0.00 0.00 44.12 3.85
557 558 0.321021 TGGTACGGTGCGTATTTGGT 59.679 50.000 0.00 0.00 44.12 3.67
567 568 1.337447 ACGTGGAAGATTGGTACGGTG 60.337 52.381 0.00 0.00 38.92 4.94
805 1229 2.809696 GCGTGCCCGGTTGTTTATATAT 59.190 45.455 0.00 0.00 33.68 0.86
858 1417 1.815003 CTTGCAGATGGTTTGGGACTC 59.185 52.381 0.00 0.00 0.00 3.36
883 1442 0.107643 GGAGCCTGGCTAGGATGAAC 59.892 60.000 23.44 6.17 44.35 3.18
926 1498 2.555547 GCTGCCGTTGCTTCCTTGT 61.556 57.895 0.00 0.00 38.71 3.16
1191 1802 1.239347 GGGTGCACCTTCTTCTTCAC 58.761 55.000 33.91 10.67 35.85 3.18
1263 1883 1.240641 TACAACTTGGTGGCATGGCG 61.241 55.000 15.27 1.99 0.00 5.69
1274 1894 4.847255 GCTGCGGCTTACAACTTG 57.153 55.556 11.21 0.00 35.22 3.16
1312 1951 6.037720 TCGAAAGAACAAACATACACACACAT 59.962 34.615 0.00 0.00 37.03 3.21
1339 1980 2.540383 TCTTTGGCCTCAGAGAAGCTA 58.460 47.619 3.32 0.00 32.12 3.32
1349 1994 3.801114 ACACAAAGTTTCTTTGGCCTC 57.199 42.857 21.01 0.00 33.92 4.70
1350 1995 3.369366 CCAACACAAAGTTTCTTTGGCCT 60.369 43.478 21.01 6.74 38.74 5.19
1351 1996 2.935849 CCAACACAAAGTTTCTTTGGCC 59.064 45.455 21.01 0.00 38.74 5.36
1352 1997 3.855858 TCCAACACAAAGTTTCTTTGGC 58.144 40.909 21.01 0.00 38.74 4.52
1353 1998 4.159506 TCCTCCAACACAAAGTTTCTTTGG 59.840 41.667 21.01 14.20 38.74 3.28
1354 1999 5.105756 ACTCCTCCAACACAAAGTTTCTTTG 60.106 40.000 17.16 17.16 38.74 2.77
1355 2000 5.016831 ACTCCTCCAACACAAAGTTTCTTT 58.983 37.500 0.00 0.00 38.74 2.52
1356 2001 4.399303 CACTCCTCCAACACAAAGTTTCTT 59.601 41.667 0.00 0.00 38.74 2.52
1357 2002 3.947834 CACTCCTCCAACACAAAGTTTCT 59.052 43.478 0.00 0.00 38.74 2.52
1358 2003 3.694566 ACACTCCTCCAACACAAAGTTTC 59.305 43.478 0.00 0.00 38.74 2.78
1359 2004 3.443681 CACACTCCTCCAACACAAAGTTT 59.556 43.478 0.00 0.00 38.74 2.66
1360 2005 3.016736 CACACTCCTCCAACACAAAGTT 58.983 45.455 0.00 0.00 42.42 2.66
1361 2006 2.026262 ACACACTCCTCCAACACAAAGT 60.026 45.455 0.00 0.00 0.00 2.66
1362 2007 2.643551 ACACACTCCTCCAACACAAAG 58.356 47.619 0.00 0.00 0.00 2.77
1363 2008 2.799126 ACACACTCCTCCAACACAAA 57.201 45.000 0.00 0.00 0.00 2.83
1364 2009 3.199071 ACTTACACACTCCTCCAACACAA 59.801 43.478 0.00 0.00 0.00 3.33
1365 2010 2.769663 ACTTACACACTCCTCCAACACA 59.230 45.455 0.00 0.00 0.00 3.72
1366 2011 3.181469 TGACTTACACACTCCTCCAACAC 60.181 47.826 0.00 0.00 0.00 3.32
1367 2012 3.035363 TGACTTACACACTCCTCCAACA 58.965 45.455 0.00 0.00 0.00 3.33
1368 2013 3.746045 TGACTTACACACTCCTCCAAC 57.254 47.619 0.00 0.00 0.00 3.77
1380 2025 4.617253 ACATTACAGCCAGTGACTTACA 57.383 40.909 0.00 0.00 0.00 2.41
1381 2026 5.689819 CAAACATTACAGCCAGTGACTTAC 58.310 41.667 0.00 0.00 0.00 2.34
1382 2027 4.215399 GCAAACATTACAGCCAGTGACTTA 59.785 41.667 0.00 0.00 0.00 2.24
1383 2028 3.004734 GCAAACATTACAGCCAGTGACTT 59.995 43.478 0.00 0.00 0.00 3.01
1384 2029 2.554032 GCAAACATTACAGCCAGTGACT 59.446 45.455 0.00 0.00 0.00 3.41
1385 2030 2.293122 TGCAAACATTACAGCCAGTGAC 59.707 45.455 0.00 0.00 0.00 3.67
1386 2031 2.580962 TGCAAACATTACAGCCAGTGA 58.419 42.857 0.00 0.00 0.00 3.41
1387 2032 3.243501 ACTTGCAAACATTACAGCCAGTG 60.244 43.478 0.00 0.00 32.57 3.66
1388 2033 2.958355 ACTTGCAAACATTACAGCCAGT 59.042 40.909 0.00 0.00 0.00 4.00
1389 2034 3.648339 ACTTGCAAACATTACAGCCAG 57.352 42.857 0.00 0.00 0.00 4.85
1390 2035 3.131933 ACAACTTGCAAACATTACAGCCA 59.868 39.130 0.00 0.00 0.00 4.75
1391 2036 3.716601 ACAACTTGCAAACATTACAGCC 58.283 40.909 0.00 0.00 0.00 4.85
1392 2037 5.717038 AAACAACTTGCAAACATTACAGC 57.283 34.783 0.00 0.00 0.00 4.40
1393 2038 7.059448 ACAAAACAACTTGCAAACATTACAG 57.941 32.000 0.00 0.00 0.00 2.74
1394 2039 7.171508 TGAACAAAACAACTTGCAAACATTACA 59.828 29.630 0.00 0.00 0.00 2.41
1395 2040 7.513968 TGAACAAAACAACTTGCAAACATTAC 58.486 30.769 0.00 0.00 0.00 1.89
1396 2041 7.658179 TGAACAAAACAACTTGCAAACATTA 57.342 28.000 0.00 0.00 0.00 1.90
1397 2042 6.551385 TGAACAAAACAACTTGCAAACATT 57.449 29.167 0.00 0.00 0.00 2.71
1398 2043 6.740411 ATGAACAAAACAACTTGCAAACAT 57.260 29.167 0.00 0.00 0.00 2.71
1399 2044 6.369005 CAATGAACAAAACAACTTGCAAACA 58.631 32.000 0.00 0.00 0.00 2.83
1400 2045 5.794448 CCAATGAACAAAACAACTTGCAAAC 59.206 36.000 0.00 0.00 0.00 2.93
1401 2046 5.471456 ACCAATGAACAAAACAACTTGCAAA 59.529 32.000 0.00 0.00 0.00 3.68
1402 2047 4.999950 ACCAATGAACAAAACAACTTGCAA 59.000 33.333 0.00 0.00 0.00 4.08
1403 2048 4.573900 ACCAATGAACAAAACAACTTGCA 58.426 34.783 0.00 0.00 0.00 4.08
1404 2049 5.121454 TGAACCAATGAACAAAACAACTTGC 59.879 36.000 0.00 0.00 0.00 4.01
1405 2050 6.718454 TGAACCAATGAACAAAACAACTTG 57.282 33.333 0.00 0.00 0.00 3.16
1406 2051 7.736447 TTTGAACCAATGAACAAAACAACTT 57.264 28.000 0.00 0.00 30.94 2.66
1407 2052 7.920160 ATTTGAACCAATGAACAAAACAACT 57.080 28.000 0.00 0.00 36.19 3.16
1410 2055 9.442047 ACTTTATTTGAACCAATGAACAAAACA 57.558 25.926 0.00 0.00 36.19 2.83
1413 2058 9.658799 TCAACTTTATTTGAACCAATGAACAAA 57.341 25.926 0.00 0.00 36.82 2.83
1414 2059 9.092876 GTCAACTTTATTTGAACCAATGAACAA 57.907 29.630 0.00 0.00 37.24 2.83
1415 2060 8.253810 TGTCAACTTTATTTGAACCAATGAACA 58.746 29.630 0.00 0.00 37.24 3.18
1416 2061 8.641499 TGTCAACTTTATTTGAACCAATGAAC 57.359 30.769 0.00 0.00 37.24 3.18
1417 2062 9.658799 TTTGTCAACTTTATTTGAACCAATGAA 57.341 25.926 0.00 0.00 37.24 2.57
1418 2063 9.658799 TTTTGTCAACTTTATTTGAACCAATGA 57.341 25.926 0.00 0.00 37.24 2.57
1443 2088 6.105397 AGTGCTGGATTGTGATTCATTTTT 57.895 33.333 0.00 0.00 0.00 1.94
1444 2089 5.733620 AGTGCTGGATTGTGATTCATTTT 57.266 34.783 0.00 0.00 0.00 1.82
1445 2090 6.839124 TTAGTGCTGGATTGTGATTCATTT 57.161 33.333 0.00 0.00 0.00 2.32
1446 2091 7.123098 TCAATTAGTGCTGGATTGTGATTCATT 59.877 33.333 0.00 0.00 33.60 2.57
1447 2092 6.604396 TCAATTAGTGCTGGATTGTGATTCAT 59.396 34.615 0.00 0.00 33.60 2.57
1448 2093 5.945191 TCAATTAGTGCTGGATTGTGATTCA 59.055 36.000 8.74 0.00 33.60 2.57
1449 2094 6.094603 ACTCAATTAGTGCTGGATTGTGATTC 59.905 38.462 13.67 0.00 36.93 2.52
1450 2095 5.948162 ACTCAATTAGTGCTGGATTGTGATT 59.052 36.000 13.67 0.00 36.93 2.57
1451 2096 5.503927 ACTCAATTAGTGCTGGATTGTGAT 58.496 37.500 13.67 0.00 36.93 3.06
1452 2097 4.910195 ACTCAATTAGTGCTGGATTGTGA 58.090 39.130 13.67 0.00 36.93 3.58
1453 2098 5.633830 AACTCAATTAGTGCTGGATTGTG 57.366 39.130 8.74 8.83 38.88 3.33
1454 2099 6.595716 GTCTAACTCAATTAGTGCTGGATTGT 59.404 38.462 8.74 0.00 41.13 2.71
1455 2100 6.037610 GGTCTAACTCAATTAGTGCTGGATTG 59.962 42.308 0.00 0.00 41.13 2.67
1456 2101 6.069963 AGGTCTAACTCAATTAGTGCTGGATT 60.070 38.462 0.00 0.00 41.13 3.01
1457 2102 5.426833 AGGTCTAACTCAATTAGTGCTGGAT 59.573 40.000 0.00 0.00 41.13 3.41
1458 2103 4.777896 AGGTCTAACTCAATTAGTGCTGGA 59.222 41.667 0.00 0.00 41.13 3.86
1459 2104 4.872691 CAGGTCTAACTCAATTAGTGCTGG 59.127 45.833 0.00 0.00 41.13 4.85
1460 2105 5.482908 ACAGGTCTAACTCAATTAGTGCTG 58.517 41.667 0.00 0.00 41.13 4.41
1461 2106 5.746990 ACAGGTCTAACTCAATTAGTGCT 57.253 39.130 0.00 0.00 41.13 4.40
1462 2107 7.321153 TCTTACAGGTCTAACTCAATTAGTGC 58.679 38.462 0.00 0.00 41.13 4.40
1463 2108 9.877178 AATCTTACAGGTCTAACTCAATTAGTG 57.123 33.333 0.00 0.00 41.13 2.74
1464 2109 9.877178 CAATCTTACAGGTCTAACTCAATTAGT 57.123 33.333 0.00 0.00 41.13 2.24
1467 2112 9.965902 AATCAATCTTACAGGTCTAACTCAATT 57.034 29.630 0.00 0.00 0.00 2.32
1468 2113 9.965902 AAATCAATCTTACAGGTCTAACTCAAT 57.034 29.630 0.00 0.00 0.00 2.57
1469 2114 9.219603 CAAATCAATCTTACAGGTCTAACTCAA 57.780 33.333 0.00 0.00 0.00 3.02
1470 2115 7.824289 CCAAATCAATCTTACAGGTCTAACTCA 59.176 37.037 0.00 0.00 0.00 3.41
1471 2116 7.824779 ACCAAATCAATCTTACAGGTCTAACTC 59.175 37.037 0.00 0.00 0.00 3.01
1472 2117 7.607991 CACCAAATCAATCTTACAGGTCTAACT 59.392 37.037 0.00 0.00 0.00 2.24
1473 2118 7.148239 CCACCAAATCAATCTTACAGGTCTAAC 60.148 40.741 0.00 0.00 0.00 2.34
1474 2119 6.884295 CCACCAAATCAATCTTACAGGTCTAA 59.116 38.462 0.00 0.00 0.00 2.10
1475 2120 6.214615 TCCACCAAATCAATCTTACAGGTCTA 59.785 38.462 0.00 0.00 0.00 2.59
1476 2121 5.014123 TCCACCAAATCAATCTTACAGGTCT 59.986 40.000 0.00 0.00 0.00 3.85
1477 2122 5.253330 TCCACCAAATCAATCTTACAGGTC 58.747 41.667 0.00 0.00 0.00 3.85
1478 2123 5.255397 TCCACCAAATCAATCTTACAGGT 57.745 39.130 0.00 0.00 0.00 4.00
1479 2124 5.711976 ACTTCCACCAAATCAATCTTACAGG 59.288 40.000 0.00 0.00 0.00 4.00
1523 2168 4.440112 CGATCAATATATACCTGCGGCTCA 60.440 45.833 0.00 0.00 0.00 4.26
1531 2176 4.651503 CCTGCCCTCGATCAATATATACCT 59.348 45.833 0.00 0.00 0.00 3.08
1610 2256 6.381420 TCTCCCTTGTAACCTTCTATCTCTTG 59.619 42.308 0.00 0.00 0.00 3.02
1620 2266 4.753186 TCTCTTCTCTCCCTTGTAACCTT 58.247 43.478 0.00 0.00 0.00 3.50
1737 2386 3.449737 AGCTCTACCGTACAAGCCATTTA 59.550 43.478 0.00 0.00 35.32 1.40
1808 2457 2.810852 GAGTTGCAGAGAAGAAGTTGGG 59.189 50.000 0.00 0.00 0.00 4.12
1859 2508 0.038892 CATGCCAGAACCAAGCACAC 60.039 55.000 0.00 0.00 39.77 3.82
2037 2686 2.223805 GGAAACAAGCAAGTGTCAAGGG 60.224 50.000 1.80 0.00 0.00 3.95
2223 2874 5.705441 GGACAACTGTCAAAAGGATCATACA 59.295 40.000 11.76 0.00 46.47 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.