Multiple sequence alignment - TraesCS6B01G082500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G082500 chr6B 100.000 2932 0 0 1 2932 59293920 59296851 0.000000e+00 5415.0
1 TraesCS6B01G082500 chr6B 95.369 799 34 2 854 1651 28713886 28714682 0.000000e+00 1267.0
2 TraesCS6B01G082500 chr6B 90.417 887 65 14 859 1730 28517497 28516616 0.000000e+00 1149.0
3 TraesCS6B01G082500 chr6B 91.142 779 41 19 860 1623 59232634 59233399 0.000000e+00 1031.0
4 TraesCS6B01G082500 chr6B 87.293 905 73 22 859 1729 28925854 28926750 0.000000e+00 996.0
5 TraesCS6B01G082500 chr6B 92.148 675 45 6 911 1584 29068510 29067843 0.000000e+00 946.0
6 TraesCS6B01G082500 chr6B 89.530 745 51 16 859 1585 28256806 28256071 0.000000e+00 918.0
7 TraesCS6B01G082500 chr6B 91.935 372 27 3 2563 2932 28515803 28515433 4.330000e-143 518.0
8 TraesCS6B01G082500 chr6B 87.541 305 36 2 2621 2924 28715573 28715876 4.650000e-93 351.0
9 TraesCS6B01G082500 chr6B 86.817 311 39 2 2620 2929 28720007 28720316 2.160000e-91 346.0
10 TraesCS6B01G082500 chr6B 82.371 329 55 3 2598 2925 28928278 28928604 1.720000e-72 283.0
11 TraesCS6B01G082500 chr6B 81.070 243 29 9 2023 2254 28516279 28516043 8.350000e-41 178.0
12 TraesCS6B01G082500 chr6B 84.746 177 22 5 2266 2438 28516060 28515885 3.880000e-39 172.0
13 TraesCS6B01G082500 chr6B 84.277 159 18 5 2101 2254 28715276 28715432 6.550000e-32 148.0
14 TraesCS6B01G082500 chr6B 93.103 87 5 1 2266 2351 28927191 28927277 3.070000e-25 126.0
15 TraesCS6B01G082500 chr6A 89.775 890 61 18 854 1725 16700807 16701684 0.000000e+00 1112.0
16 TraesCS6B01G082500 chr6A 88.652 846 73 14 904 1729 16658813 16657971 0.000000e+00 1009.0
17 TraesCS6B01G082500 chr6A 85.000 240 28 8 566 801 115233122 115232887 1.360000e-58 237.0
18 TraesCS6B01G082500 chr6A 80.731 301 46 9 123 421 115233672 115233382 1.060000e-54 224.0
19 TraesCS6B01G082500 chr6A 93.966 116 7 0 1 116 16700563 16700678 3.000000e-40 176.0
20 TraesCS6B01G082500 chr6A 98.611 72 0 1 787 857 16700708 16700779 3.070000e-25 126.0
21 TraesCS6B01G082500 chr6D 89.333 900 66 16 854 1729 16510585 16511478 0.000000e+00 1103.0
22 TraesCS6B01G082500 chr6D 89.987 799 61 11 944 1729 16390173 16389381 0.000000e+00 1014.0
23 TraesCS6B01G082500 chr6D 88.227 739 59 18 860 1582 16529687 16528961 0.000000e+00 857.0
24 TraesCS6B01G082500 chr6D 88.387 310 34 2 2622 2930 16512249 16512557 3.570000e-99 372.0
25 TraesCS6B01G082500 chr6D 95.763 118 3 2 1 116 16510339 16510456 3.860000e-44 189.0
26 TraesCS6B01G082500 chr6D 89.189 148 16 0 2107 2254 16389042 16388895 4.990000e-43 185.0
27 TraesCS6B01G082500 chr6D 98.611 72 0 1 787 857 16510486 16510557 3.070000e-25 126.0
28 TraesCS6B01G082500 chr6D 79.365 126 15 2 1 115 82596862 82596737 8.710000e-11 78.7
29 TraesCS6B01G082500 chr6D 89.655 58 4 2 1 57 82591061 82591005 4.050000e-09 73.1
30 TraesCS6B01G082500 chr3A 88.058 896 76 19 855 1732 66249821 66250703 0.000000e+00 1033.0
31 TraesCS6B01G082500 chr3A 85.479 668 69 19 126 786 256242224 256242870 0.000000e+00 671.0
32 TraesCS6B01G082500 chr3A 93.056 72 4 1 787 857 66249723 66249794 1.440000e-18 104.0
33 TraesCS6B01G082500 chr3A 93.333 45 3 0 5 49 547109856 547109900 1.890000e-07 67.6
34 TraesCS6B01G082500 chr3B 85.307 667 70 21 127 786 352241558 352242203 0.000000e+00 664.0
35 TraesCS6B01G082500 chr3B 85.081 248 33 3 125 372 698194640 698194397 1.740000e-62 250.0
36 TraesCS6B01G082500 chr1A 85.467 578 40 21 125 661 277538765 277538191 1.970000e-156 562.0
37 TraesCS6B01G082500 chr3D 83.005 659 65 24 126 781 247893007 247893621 1.190000e-153 553.0
38 TraesCS6B01G082500 chr3D 83.398 259 39 3 114 372 445846278 445846024 1.360000e-58 237.0
39 TraesCS6B01G082500 chr3D 85.714 217 29 1 122 338 200464131 200464345 8.170000e-56 228.0
40 TraesCS6B01G082500 chr7A 88.356 438 42 8 353 786 696015494 696015926 4.330000e-143 518.0
41 TraesCS6B01G082500 chr7A 85.185 81 11 1 676 755 245468273 245468353 6.730000e-12 82.4
42 TraesCS6B01G082500 chr4A 89.368 348 30 3 125 470 597165079 597165421 5.800000e-117 431.0
43 TraesCS6B01G082500 chr4A 93.985 266 16 0 520 785 597167286 597167551 1.270000e-108 403.0
44 TraesCS6B01G082500 chr7B 87.200 125 15 1 663 786 614728780 614728656 1.100000e-29 141.0
45 TraesCS6B01G082500 chr1B 83.582 134 20 2 662 794 518169724 518169592 1.100000e-24 124.0
46 TraesCS6B01G082500 chr5A 78.453 181 36 3 604 783 641640474 641640652 6.640000e-22 115.0
47 TraesCS6B01G082500 chr1D 84.615 104 13 3 13 114 81452619 81452517 1.860000e-17 100.0
48 TraesCS6B01G082500 chr2B 80.159 126 10 5 3 114 796609027 796609151 2.420000e-11 80.5
49 TraesCS6B01G082500 chr2D 92.000 50 3 1 1 49 527902248 527902199 5.240000e-08 69.4
50 TraesCS6B01G082500 chr2D 86.667 60 6 2 1 58 6603787 6603728 6.780000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G082500 chr6B 59293920 59296851 2931 False 5415.000000 5415 100.000000 1 2932 1 chr6B.!!$F3 2931
1 TraesCS6B01G082500 chr6B 59232634 59233399 765 False 1031.000000 1031 91.142000 860 1623 1 chr6B.!!$F2 763
2 TraesCS6B01G082500 chr6B 29067843 29068510 667 True 946.000000 946 92.148000 911 1584 1 chr6B.!!$R2 673
3 TraesCS6B01G082500 chr6B 28256071 28256806 735 True 918.000000 918 89.530000 859 1585 1 chr6B.!!$R1 726
4 TraesCS6B01G082500 chr6B 28713886 28715876 1990 False 588.666667 1267 89.062333 854 2924 3 chr6B.!!$F4 2070
5 TraesCS6B01G082500 chr6B 28515433 28517497 2064 True 504.250000 1149 87.042000 859 2932 4 chr6B.!!$R3 2073
6 TraesCS6B01G082500 chr6B 28925854 28928604 2750 False 468.333333 996 87.589000 859 2925 3 chr6B.!!$F5 2066
7 TraesCS6B01G082500 chr6A 16657971 16658813 842 True 1009.000000 1009 88.652000 904 1729 1 chr6A.!!$R1 825
8 TraesCS6B01G082500 chr6A 16700563 16701684 1121 False 471.333333 1112 94.117333 1 1725 3 chr6A.!!$F1 1724
9 TraesCS6B01G082500 chr6A 115232887 115233672 785 True 230.500000 237 82.865500 123 801 2 chr6A.!!$R2 678
10 TraesCS6B01G082500 chr6D 16528961 16529687 726 True 857.000000 857 88.227000 860 1582 1 chr6D.!!$R1 722
11 TraesCS6B01G082500 chr6D 16388895 16390173 1278 True 599.500000 1014 89.588000 944 2254 2 chr6D.!!$R4 1310
12 TraesCS6B01G082500 chr6D 16510339 16512557 2218 False 447.500000 1103 93.023500 1 2930 4 chr6D.!!$F1 2929
13 TraesCS6B01G082500 chr3A 256242224 256242870 646 False 671.000000 671 85.479000 126 786 1 chr3A.!!$F1 660
14 TraesCS6B01G082500 chr3A 66249723 66250703 980 False 568.500000 1033 90.557000 787 1732 2 chr3A.!!$F3 945
15 TraesCS6B01G082500 chr3B 352241558 352242203 645 False 664.000000 664 85.307000 127 786 1 chr3B.!!$F1 659
16 TraesCS6B01G082500 chr1A 277538191 277538765 574 True 562.000000 562 85.467000 125 661 1 chr1A.!!$R1 536
17 TraesCS6B01G082500 chr3D 247893007 247893621 614 False 553.000000 553 83.005000 126 781 1 chr3D.!!$F2 655
18 TraesCS6B01G082500 chr4A 597165079 597167551 2472 False 417.000000 431 91.676500 125 785 2 chr4A.!!$F1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 775 0.032678 CGCAAGCGAGGATCCACTAT 59.967 55.0 15.82 0.0 42.83 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2229 4641 0.179234 TCTTGTGCACTCCGGTGAAA 59.821 50.0 19.41 0.0 45.61 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 119 4.952335 AGTAGAGCCAAATTGGATTTCTGG 59.048 41.667 17.47 0.00 35.51 3.86
117 120 2.498885 AGAGCCAAATTGGATTTCTGGC 59.501 45.455 17.47 6.91 35.51 4.85
118 121 1.205417 AGCCAAATTGGATTTCTGGCG 59.795 47.619 17.47 0.00 42.75 5.69
119 122 1.643880 CCAAATTGGATTTCTGGCGC 58.356 50.000 6.04 0.00 40.96 6.53
120 123 1.067000 CCAAATTGGATTTCTGGCGCA 60.067 47.619 10.83 0.00 40.96 6.09
121 124 2.264813 CAAATTGGATTTCTGGCGCAG 58.735 47.619 10.83 4.99 0.00 5.18
153 156 1.514873 GGTTAGCTGCGTTGCATGC 60.515 57.895 11.82 11.82 38.13 4.06
155 158 2.032075 TTAGCTGCGTTGCATGCGA 61.032 52.632 14.09 8.74 38.13 5.10
197 200 2.469516 GGCTGTTTGGTATCCCGCG 61.470 63.158 0.00 0.00 0.00 6.46
327 330 0.106619 GCTCCCTCCTTCGGTCTCTA 60.107 60.000 0.00 0.00 0.00 2.43
339 368 1.516603 GTCTCTACGGACCAAGCGC 60.517 63.158 0.00 0.00 0.00 5.92
340 369 1.974875 TCTCTACGGACCAAGCGCA 60.975 57.895 11.47 0.00 0.00 6.09
341 370 1.517257 CTCTACGGACCAAGCGCAG 60.517 63.158 11.47 0.38 0.00 5.18
493 718 2.677979 GCCTCGTTCGCCTTTGTCC 61.678 63.158 0.00 0.00 0.00 4.02
495 720 0.882927 CCTCGTTCGCCTTTGTCCAA 60.883 55.000 0.00 0.00 0.00 3.53
496 721 0.512952 CTCGTTCGCCTTTGTCCAAG 59.487 55.000 0.00 0.00 0.00 3.61
497 722 1.082104 CGTTCGCCTTTGTCCAAGC 60.082 57.895 0.00 0.00 0.00 4.01
498 723 1.082104 GTTCGCCTTTGTCCAAGCG 60.082 57.895 7.18 7.18 34.94 4.68
499 724 1.525077 TTCGCCTTTGTCCAAGCGT 60.525 52.632 11.69 0.00 35.09 5.07
500 725 1.098712 TTCGCCTTTGTCCAAGCGTT 61.099 50.000 11.69 0.00 35.09 4.84
501 726 1.370414 CGCCTTTGTCCAAGCGTTG 60.370 57.895 5.73 0.00 31.38 4.10
503 728 1.732917 CCTTTGTCCAAGCGTTGCA 59.267 52.632 0.00 0.00 0.00 4.08
505 730 0.929824 CTTTGTCCAAGCGTTGCACG 60.930 55.000 4.61 4.61 45.88 5.34
507 732 4.683334 GTCCAAGCGTTGCACGGC 62.683 66.667 10.02 5.55 42.82 5.68
509 734 4.688419 CCAAGCGTTGCACGGCAG 62.688 66.667 10.48 3.01 42.82 4.85
510 735 3.648982 CAAGCGTTGCACGGCAGA 61.649 61.111 10.48 0.00 42.82 4.26
511 736 2.669569 AAGCGTTGCACGGCAGAT 60.670 55.556 10.48 0.00 42.82 2.90
512 737 2.680913 AAGCGTTGCACGGCAGATC 61.681 57.895 10.48 0.00 42.82 2.75
513 738 4.166011 GCGTTGCACGGCAGATCC 62.166 66.667 10.02 0.00 42.82 3.36
514 739 2.434884 CGTTGCACGGCAGATCCT 60.435 61.111 0.00 0.00 40.61 3.24
515 740 1.153647 CGTTGCACGGCAGATCCTA 60.154 57.895 0.00 0.00 40.61 2.94
516 741 1.421410 CGTTGCACGGCAGATCCTAC 61.421 60.000 0.00 0.00 40.61 3.18
517 742 1.090052 GTTGCACGGCAGATCCTACC 61.090 60.000 0.00 0.00 40.61 3.18
521 746 4.301027 CGGCAGATCCTACCGCCC 62.301 72.222 5.81 0.00 41.71 6.13
522 747 2.844839 GGCAGATCCTACCGCCCT 60.845 66.667 0.00 0.00 38.67 5.19
523 748 2.737830 GCAGATCCTACCGCCCTC 59.262 66.667 0.00 0.00 0.00 4.30
524 749 3.043419 CAGATCCTACCGCCCTCG 58.957 66.667 0.00 0.00 0.00 4.63
525 750 2.913060 AGATCCTACCGCCCTCGC 60.913 66.667 0.00 0.00 0.00 5.03
547 772 2.184322 TCGCAAGCGAGGATCCAC 59.816 61.111 15.82 6.85 44.01 4.02
548 773 2.185350 CGCAAGCGAGGATCCACT 59.815 61.111 15.82 5.26 42.83 4.00
549 774 1.035385 TCGCAAGCGAGGATCCACTA 61.035 55.000 15.82 0.00 44.01 2.74
550 775 0.032678 CGCAAGCGAGGATCCACTAT 59.967 55.000 15.82 0.00 42.83 2.12
551 776 1.789506 GCAAGCGAGGATCCACTATC 58.210 55.000 15.82 1.10 0.00 2.08
552 777 1.069204 GCAAGCGAGGATCCACTATCA 59.931 52.381 15.82 0.00 36.20 2.15
553 778 2.865670 GCAAGCGAGGATCCACTATCAG 60.866 54.545 15.82 0.00 36.20 2.90
554 779 1.626686 AGCGAGGATCCACTATCAGG 58.373 55.000 15.82 0.00 36.20 3.86
555 780 0.037790 GCGAGGATCCACTATCAGGC 60.038 60.000 15.82 1.45 36.20 4.85
556 781 0.605589 CGAGGATCCACTATCAGGCC 59.394 60.000 15.82 0.00 36.20 5.19
557 782 1.722034 GAGGATCCACTATCAGGCCA 58.278 55.000 15.82 0.00 36.20 5.36
558 783 2.264455 GAGGATCCACTATCAGGCCAT 58.736 52.381 15.82 0.00 36.20 4.40
559 784 2.235898 GAGGATCCACTATCAGGCCATC 59.764 54.545 15.82 0.00 36.20 3.51
560 785 2.158035 AGGATCCACTATCAGGCCATCT 60.158 50.000 15.82 0.00 36.20 2.90
561 786 2.027377 GGATCCACTATCAGGCCATCTG 60.027 54.545 6.95 0.00 44.68 2.90
562 787 2.180946 TCCACTATCAGGCCATCTGT 57.819 50.000 5.01 0.00 43.76 3.41
563 788 3.328535 TCCACTATCAGGCCATCTGTA 57.671 47.619 5.01 0.00 43.76 2.74
564 789 3.234353 TCCACTATCAGGCCATCTGTAG 58.766 50.000 5.01 2.27 43.76 2.74
577 802 0.033503 TCTGTAGTCATCGAGCCCCA 60.034 55.000 0.00 0.00 0.00 4.96
583 808 1.838846 TCATCGAGCCCCAGATCCC 60.839 63.158 0.00 0.00 0.00 3.85
587 812 2.764128 GAGCCCCAGATCCCGTCA 60.764 66.667 0.00 0.00 0.00 4.35
596 821 1.125093 AGATCCCGTCACCCAACACA 61.125 55.000 0.00 0.00 0.00 3.72
597 822 0.673644 GATCCCGTCACCCAACACAG 60.674 60.000 0.00 0.00 0.00 3.66
598 823 1.415672 ATCCCGTCACCCAACACAGT 61.416 55.000 0.00 0.00 0.00 3.55
601 826 1.355210 CGTCACCCAACACAGTTGC 59.645 57.895 4.42 0.00 0.00 4.17
602 827 1.733526 GTCACCCAACACAGTTGCC 59.266 57.895 4.42 0.00 0.00 4.52
603 828 0.751643 GTCACCCAACACAGTTGCCT 60.752 55.000 4.42 0.00 0.00 4.75
609 834 0.518636 CAACACAGTTGCCTGATCCG 59.481 55.000 0.00 0.00 41.50 4.18
611 836 1.672030 CACAGTTGCCTGATCCGCA 60.672 57.895 0.62 0.62 41.50 5.69
614 839 0.379669 CAGTTGCCTGATCCGCATTC 59.620 55.000 5.49 3.38 41.50 2.67
617 842 0.034186 TTGCCTGATCCGCATTCCTT 60.034 50.000 5.49 0.00 35.83 3.36
626 851 2.368439 TCCGCATTCCTTCCTGATTTG 58.632 47.619 0.00 0.00 0.00 2.32
632 857 4.826183 GCATTCCTTCCTGATTTGAGCTAT 59.174 41.667 0.00 0.00 0.00 2.97
637 862 7.623999 TCCTTCCTGATTTGAGCTATATTCT 57.376 36.000 0.00 0.00 0.00 2.40
651 876 4.210120 GCTATATTCTGAAGAACCTGCACG 59.790 45.833 0.00 0.00 36.80 5.34
653 878 3.678056 ATTCTGAAGAACCTGCACGTA 57.322 42.857 0.00 0.00 36.80 3.57
654 879 2.433868 TCTGAAGAACCTGCACGTAC 57.566 50.000 0.00 0.00 0.00 3.67
655 880 1.684450 TCTGAAGAACCTGCACGTACA 59.316 47.619 0.00 0.00 0.00 2.90
656 881 2.061773 CTGAAGAACCTGCACGTACAG 58.938 52.381 8.93 8.93 37.42 2.74
658 883 0.602905 AAGAACCTGCACGTACAGCC 60.603 55.000 10.46 2.07 36.29 4.85
659 884 1.301401 GAACCTGCACGTACAGCCA 60.301 57.895 10.46 0.00 36.29 4.75
661 886 3.121030 CCTGCACGTACAGCCAGC 61.121 66.667 10.46 0.00 36.29 4.85
662 887 3.121030 CTGCACGTACAGCCAGCC 61.121 66.667 2.15 0.00 0.00 4.85
663 888 3.881952 CTGCACGTACAGCCAGCCA 62.882 63.158 2.15 0.00 0.00 4.75
664 889 2.436646 GCACGTACAGCCAGCCAT 60.437 61.111 0.00 0.00 0.00 4.40
665 890 2.464459 GCACGTACAGCCAGCCATC 61.464 63.158 0.00 0.00 0.00 3.51
666 891 1.219124 CACGTACAGCCAGCCATCT 59.781 57.895 0.00 0.00 0.00 2.90
667 892 0.807667 CACGTACAGCCAGCCATCTC 60.808 60.000 0.00 0.00 0.00 2.75
668 893 1.257750 ACGTACAGCCAGCCATCTCA 61.258 55.000 0.00 0.00 0.00 3.27
669 894 0.105593 CGTACAGCCAGCCATCTCAT 59.894 55.000 0.00 0.00 0.00 2.90
670 895 1.341209 CGTACAGCCAGCCATCTCATA 59.659 52.381 0.00 0.00 0.00 2.15
671 896 2.760374 GTACAGCCAGCCATCTCATAC 58.240 52.381 0.00 0.00 0.00 2.39
672 897 1.206878 ACAGCCAGCCATCTCATACA 58.793 50.000 0.00 0.00 0.00 2.29
673 898 1.561076 ACAGCCAGCCATCTCATACAA 59.439 47.619 0.00 0.00 0.00 2.41
674 899 2.025981 ACAGCCAGCCATCTCATACAAA 60.026 45.455 0.00 0.00 0.00 2.83
675 900 3.220110 CAGCCAGCCATCTCATACAAAT 58.780 45.455 0.00 0.00 0.00 2.32
676 901 3.635373 CAGCCAGCCATCTCATACAAATT 59.365 43.478 0.00 0.00 0.00 1.82
677 902 4.098960 CAGCCAGCCATCTCATACAAATTT 59.901 41.667 0.00 0.00 0.00 1.82
678 903 4.713321 AGCCAGCCATCTCATACAAATTTT 59.287 37.500 0.00 0.00 0.00 1.82
679 904 5.893255 AGCCAGCCATCTCATACAAATTTTA 59.107 36.000 0.00 0.00 0.00 1.52
680 905 5.979517 GCCAGCCATCTCATACAAATTTTAC 59.020 40.000 0.00 0.00 0.00 2.01
681 906 6.507023 CCAGCCATCTCATACAAATTTTACC 58.493 40.000 0.00 0.00 0.00 2.85
682 907 6.096705 CCAGCCATCTCATACAAATTTTACCA 59.903 38.462 0.00 0.00 0.00 3.25
683 908 7.363705 CCAGCCATCTCATACAAATTTTACCAA 60.364 37.037 0.00 0.00 0.00 3.67
684 909 8.034215 CAGCCATCTCATACAAATTTTACCAAA 58.966 33.333 0.00 0.00 0.00 3.28
685 910 8.034804 AGCCATCTCATACAAATTTTACCAAAC 58.965 33.333 0.00 0.00 0.00 2.93
686 911 7.816995 GCCATCTCATACAAATTTTACCAAACA 59.183 33.333 0.00 0.00 0.00 2.83
687 912 9.139174 CCATCTCATACAAATTTTACCAAACAC 57.861 33.333 0.00 0.00 0.00 3.32
688 913 9.912634 CATCTCATACAAATTTTACCAAACACT 57.087 29.630 0.00 0.00 0.00 3.55
695 920 7.590279 ACAAATTTTACCAAACACTATCTCGG 58.410 34.615 0.00 0.00 0.00 4.63
696 921 5.813080 ATTTTACCAAACACTATCTCGGC 57.187 39.130 0.00 0.00 0.00 5.54
697 922 4.546829 TTTACCAAACACTATCTCGGCT 57.453 40.909 0.00 0.00 0.00 5.52
698 923 2.674796 ACCAAACACTATCTCGGCTC 57.325 50.000 0.00 0.00 0.00 4.70
699 924 1.899814 ACCAAACACTATCTCGGCTCA 59.100 47.619 0.00 0.00 0.00 4.26
700 925 2.501723 ACCAAACACTATCTCGGCTCAT 59.498 45.455 0.00 0.00 0.00 2.90
701 926 3.704566 ACCAAACACTATCTCGGCTCATA 59.295 43.478 0.00 0.00 0.00 2.15
702 927 4.202161 ACCAAACACTATCTCGGCTCATAG 60.202 45.833 0.00 0.00 0.00 2.23
703 928 4.202161 CCAAACACTATCTCGGCTCATAGT 60.202 45.833 0.00 0.00 36.44 2.12
704 929 5.352284 CAAACACTATCTCGGCTCATAGTT 58.648 41.667 0.00 0.00 34.22 2.24
705 930 4.576216 ACACTATCTCGGCTCATAGTTG 57.424 45.455 0.00 0.00 34.22 3.16
706 931 3.243569 ACACTATCTCGGCTCATAGTTGC 60.244 47.826 0.00 0.00 34.22 4.17
707 932 2.959030 ACTATCTCGGCTCATAGTTGCA 59.041 45.455 0.00 0.00 32.84 4.08
708 933 3.576118 ACTATCTCGGCTCATAGTTGCAT 59.424 43.478 0.00 0.00 32.84 3.96
709 934 2.515926 TCTCGGCTCATAGTTGCATC 57.484 50.000 0.00 0.00 0.00 3.91
710 935 1.135046 CTCGGCTCATAGTTGCATCG 58.865 55.000 0.00 0.00 0.00 3.84
711 936 0.249447 TCGGCTCATAGTTGCATCGG 60.249 55.000 0.00 0.00 0.00 4.18
712 937 1.835483 CGGCTCATAGTTGCATCGGC 61.835 60.000 0.00 0.00 41.68 5.54
713 938 0.533755 GGCTCATAGTTGCATCGGCT 60.534 55.000 0.00 0.00 41.91 5.52
714 939 0.864455 GCTCATAGTTGCATCGGCTC 59.136 55.000 0.00 0.00 41.91 4.70
715 940 1.807755 GCTCATAGTTGCATCGGCTCA 60.808 52.381 0.00 0.00 41.91 4.26
716 941 2.554142 CTCATAGTTGCATCGGCTCAA 58.446 47.619 0.00 0.00 41.91 3.02
717 942 2.279741 TCATAGTTGCATCGGCTCAAC 58.720 47.619 0.00 6.51 41.97 3.18
718 943 1.331756 CATAGTTGCATCGGCTCAACC 59.668 52.381 9.71 0.00 42.46 3.77
719 944 0.323302 TAGTTGCATCGGCTCAACCA 59.677 50.000 9.71 0.00 42.46 3.67
720 945 0.957395 AGTTGCATCGGCTCAACCAG 60.957 55.000 9.71 0.00 42.46 4.00
721 946 1.675310 TTGCATCGGCTCAACCAGG 60.675 57.895 0.00 0.00 41.91 4.45
722 947 3.512516 GCATCGGCTCAACCAGGC 61.513 66.667 0.00 0.00 44.60 4.85
723 948 2.825836 CATCGGCTCAACCAGGCC 60.826 66.667 0.00 0.00 45.29 5.19
727 952 2.985847 GGCTCAACCAGGCCACAC 60.986 66.667 5.01 0.00 46.84 3.82
728 953 2.113986 GCTCAACCAGGCCACACT 59.886 61.111 5.01 0.00 0.00 3.55
729 954 1.968540 GCTCAACCAGGCCACACTC 60.969 63.158 5.01 0.00 0.00 3.51
730 955 1.451504 CTCAACCAGGCCACACTCA 59.548 57.895 5.01 0.00 0.00 3.41
731 956 0.037303 CTCAACCAGGCCACACTCAT 59.963 55.000 5.01 0.00 0.00 2.90
732 957 0.036732 TCAACCAGGCCACACTCATC 59.963 55.000 5.01 0.00 0.00 2.92
733 958 0.962356 CAACCAGGCCACACTCATCC 60.962 60.000 5.01 0.00 0.00 3.51
734 959 1.426251 AACCAGGCCACACTCATCCA 61.426 55.000 5.01 0.00 0.00 3.41
735 960 1.077930 CCAGGCCACACTCATCCAG 60.078 63.158 5.01 0.00 0.00 3.86
736 961 1.748122 CAGGCCACACTCATCCAGC 60.748 63.158 5.01 0.00 0.00 4.85
737 962 2.226315 AGGCCACACTCATCCAGCA 61.226 57.895 5.01 0.00 0.00 4.41
738 963 1.077212 GGCCACACTCATCCAGCAT 60.077 57.895 0.00 0.00 0.00 3.79
739 964 1.099879 GGCCACACTCATCCAGCATC 61.100 60.000 0.00 0.00 0.00 3.91
740 965 1.099879 GCCACACTCATCCAGCATCC 61.100 60.000 0.00 0.00 0.00 3.51
741 966 0.465097 CCACACTCATCCAGCATCCC 60.465 60.000 0.00 0.00 0.00 3.85
742 967 0.545171 CACACTCATCCAGCATCCCT 59.455 55.000 0.00 0.00 0.00 4.20
743 968 0.835941 ACACTCATCCAGCATCCCTC 59.164 55.000 0.00 0.00 0.00 4.30
744 969 0.835276 CACTCATCCAGCATCCCTCA 59.165 55.000 0.00 0.00 0.00 3.86
745 970 1.420514 CACTCATCCAGCATCCCTCAT 59.579 52.381 0.00 0.00 0.00 2.90
746 971 1.420514 ACTCATCCAGCATCCCTCATG 59.579 52.381 0.00 0.00 35.29 3.07
753 978 4.591038 CATCCCTCATGCCATGCA 57.409 55.556 0.00 0.00 44.86 3.96
754 979 2.341452 CATCCCTCATGCCATGCAG 58.659 57.895 0.00 0.00 43.65 4.41
755 980 1.530891 ATCCCTCATGCCATGCAGC 60.531 57.895 0.00 0.00 43.65 5.25
756 981 2.996470 ATCCCTCATGCCATGCAGCC 62.996 60.000 0.00 0.00 43.65 4.85
757 982 2.123854 CCTCATGCCATGCAGCCT 60.124 61.111 0.00 0.00 43.65 4.58
758 983 1.149854 CCTCATGCCATGCAGCCTA 59.850 57.895 0.00 0.00 43.65 3.93
759 984 0.466739 CCTCATGCCATGCAGCCTAA 60.467 55.000 0.00 0.00 43.65 2.69
760 985 1.395635 CTCATGCCATGCAGCCTAAA 58.604 50.000 0.00 0.00 43.65 1.85
761 986 1.337071 CTCATGCCATGCAGCCTAAAG 59.663 52.381 0.00 0.00 43.65 1.85
762 987 0.249322 CATGCCATGCAGCCTAAAGC 60.249 55.000 0.00 0.00 43.65 3.51
772 997 2.616489 GCCTAAAGCTACCCAGGGA 58.384 57.895 14.54 0.00 38.99 4.20
773 998 0.916809 GCCTAAAGCTACCCAGGGAA 59.083 55.000 14.54 0.00 38.99 3.97
774 999 1.408405 GCCTAAAGCTACCCAGGGAAC 60.408 57.143 14.54 0.00 38.99 3.62
775 1000 4.657947 GCCTAAAGCTACCCAGGGAACC 62.658 59.091 14.54 0.00 45.47 3.62
928 1200 1.362355 CCAATAAAATCCGCGCCCC 59.638 57.895 0.00 0.00 0.00 5.80
929 1201 1.362355 CAATAAAATCCGCGCCCCC 59.638 57.895 0.00 0.00 0.00 5.40
969 1241 4.183865 CACAAACTCAGAGCATTCCGATA 58.816 43.478 0.00 0.00 0.00 2.92
1476 3586 1.078848 CTGCTCCCCAAGAAGTCCG 60.079 63.158 0.00 0.00 0.00 4.79
1526 3647 1.981495 CCCAAGAAGAAGACCTCCACT 59.019 52.381 0.00 0.00 0.00 4.00
1550 3671 1.741770 CCCCAAGAAGAAGACCGCG 60.742 63.158 0.00 0.00 0.00 6.46
1559 3680 4.572571 AAGACCGCGGCCACCAAA 62.573 61.111 28.58 0.00 0.00 3.28
1567 3692 1.003839 CGGCCACCAAAGAGTAGCA 60.004 57.895 2.24 0.00 0.00 3.49
1569 3697 0.678048 GGCCACCAAAGAGTAGCAGG 60.678 60.000 0.00 0.00 0.00 4.85
1666 3799 1.899814 TCTGTAGTGCCCGTCAGATTT 59.100 47.619 0.00 0.00 32.95 2.17
1668 3801 1.621317 TGTAGTGCCCGTCAGATTTGA 59.379 47.619 0.00 0.00 0.00 2.69
1678 3811 2.417719 GTCAGATTTGACGAGCAAGGT 58.582 47.619 0.00 0.00 43.84 3.50
1691 3830 3.684305 CGAGCAAGGTTGACATTGTGATA 59.316 43.478 9.83 0.00 39.56 2.15
1694 3833 5.255687 AGCAAGGTTGACATTGTGATATCA 58.744 37.500 0.00 0.00 39.56 2.15
1756 3945 2.631267 TGATCTTGCGATTGCTTGCTA 58.369 42.857 6.47 0.00 43.34 3.49
1758 3947 2.099141 TCTTGCGATTGCTTGCTACT 57.901 45.000 6.47 0.00 43.34 2.57
1762 3951 2.480641 TGCGATTGCTTGCTACTTGCA 61.481 47.619 6.47 0.00 45.93 4.08
1764 3953 5.220785 TGCGATTGCTTGCTACTTGCATT 62.221 43.478 6.47 0.00 45.21 3.56
1777 3969 2.816087 ACTTGCATTTGCGTCTGAAGAT 59.184 40.909 6.58 0.00 45.83 2.40
1780 3972 2.553602 TGCATTTGCGTCTGAAGATTGT 59.446 40.909 0.00 0.00 45.83 2.71
1783 3975 5.106197 TGCATTTGCGTCTGAAGATTGTTAT 60.106 36.000 0.00 0.00 45.83 1.89
1792 3984 8.499162 GCGTCTGAAGATTGTTATATATGCTTT 58.501 33.333 0.00 0.00 0.00 3.51
1854 4056 5.947228 TTCCATTGATCAGCGATTTATCC 57.053 39.130 0.00 0.00 0.00 2.59
1866 4085 3.002759 GCGATTTATCCTCACTTCAAGCC 59.997 47.826 0.00 0.00 0.00 4.35
1884 4103 2.707791 AGCCTATTCCTATCAAGCTGCA 59.292 45.455 1.02 0.00 0.00 4.41
1886 4112 3.244353 GCCTATTCCTATCAAGCTGCAGA 60.244 47.826 20.43 0.00 0.00 4.26
1911 4137 9.377312 GAAAACTGAATCTATGAAGAACTAGCT 57.623 33.333 0.00 0.00 34.73 3.32
1912 4138 9.732130 AAAACTGAATCTATGAAGAACTAGCTT 57.268 29.630 0.00 0.00 34.73 3.74
1964 4250 2.169832 TGCTAAGTCCTGCAGTCAAC 57.830 50.000 13.81 7.95 34.84 3.18
1971 4257 1.197721 GTCCTGCAGTCAACCATTTCG 59.802 52.381 13.81 0.00 0.00 3.46
1988 4275 6.884295 ACCATTTCGAATTAGATCTTGACCAA 59.116 34.615 0.00 0.00 0.00 3.67
1997 4284 1.679311 TCTTGACCAAGATGGCGCT 59.321 52.632 7.64 0.00 42.67 5.92
1999 4286 0.169672 CTTGACCAAGATGGCGCTTG 59.830 55.000 7.64 11.60 42.67 4.01
2026 4326 2.603560 GCGATGTAACCTCTGTAGTTGC 59.396 50.000 0.00 0.00 0.00 4.17
2027 4327 3.676324 GCGATGTAACCTCTGTAGTTGCT 60.676 47.826 0.00 0.00 31.89 3.91
2031 4331 3.895656 TGTAACCTCTGTAGTTGCTCTGT 59.104 43.478 0.00 0.00 31.89 3.41
2032 4332 3.669251 AACCTCTGTAGTTGCTCTGTC 57.331 47.619 0.00 0.00 0.00 3.51
2041 4380 7.217200 TCTGTAGTTGCTCTGTCTAACAAAAT 58.783 34.615 0.00 0.00 0.00 1.82
2065 4411 1.133976 ACTTGCAGTTGGAGTTGAGCT 60.134 47.619 0.00 0.00 0.00 4.09
2068 4414 1.072806 TGCAGTTGGAGTTGAGCTGAT 59.927 47.619 0.00 0.00 0.00 2.90
2069 4415 1.467734 GCAGTTGGAGTTGAGCTGATG 59.532 52.381 0.00 0.00 0.00 3.07
2149 4544 7.309012 GCCAGATGATGTGCTGATTTTGTATAT 60.309 37.037 0.00 0.00 34.06 0.86
2221 4633 3.368948 GCCCTTCAAAGAGTCCAGTAGAG 60.369 52.174 0.00 0.00 0.00 2.43
2229 4641 7.509546 TCAAAGAGTCCAGTAGAGAAATGTTT 58.490 34.615 0.00 0.00 0.00 2.83
2250 4662 0.396435 TCACCGGAGTGCACAAGATT 59.604 50.000 21.04 0.00 44.16 2.40
2251 4663 0.798776 CACCGGAGTGCACAAGATTC 59.201 55.000 21.04 7.08 37.14 2.52
2252 4664 0.321653 ACCGGAGTGCACAAGATTCC 60.322 55.000 21.04 15.44 0.00 3.01
2253 4665 0.036010 CCGGAGTGCACAAGATTCCT 60.036 55.000 21.04 0.00 0.00 3.36
2254 4666 1.611673 CCGGAGTGCACAAGATTCCTT 60.612 52.381 21.04 0.00 0.00 3.36
2255 4667 2.154462 CGGAGTGCACAAGATTCCTTT 58.846 47.619 21.04 0.00 0.00 3.11
2256 4668 2.554032 CGGAGTGCACAAGATTCCTTTT 59.446 45.455 21.04 0.00 0.00 2.27
2257 4669 3.004734 CGGAGTGCACAAGATTCCTTTTT 59.995 43.478 21.04 0.00 0.00 1.94
2330 4744 5.715070 CACGGTGGGAAAATAATAAGCAAA 58.285 37.500 0.00 0.00 0.00 3.68
2332 4746 6.816140 CACGGTGGGAAAATAATAAGCAAAAT 59.184 34.615 0.00 0.00 0.00 1.82
2351 4765 9.252962 AGCAAAATTTTCTGTAAAACTGATGAG 57.747 29.630 0.00 0.00 37.41 2.90
2358 4772 8.725405 TTTCTGTAAAACTGATGAGTACAACA 57.275 30.769 0.00 0.00 0.00 3.33
2368 4782 9.601217 AACTGATGAGTACAACAATAATAGGTC 57.399 33.333 0.00 0.00 0.00 3.85
2373 4787 6.442564 TGAGTACAACAATAATAGGTCACCCT 59.557 38.462 0.00 0.00 45.51 4.34
2489 5005 4.966965 AGCATCATTTTCTCTCTTGCTG 57.033 40.909 0.00 0.00 37.55 4.41
2496 5028 5.122869 TCATTTTCTCTCTTGCTGCACATAC 59.877 40.000 0.00 0.00 0.00 2.39
2504 5036 2.124151 CTGCACATACTGGGGGCC 60.124 66.667 0.00 0.00 0.00 5.80
2508 5040 1.528824 CACATACTGGGGGCCTCTG 59.471 63.158 9.01 9.01 0.00 3.35
2511 5043 1.084842 ATACTGGGGGCCTCTGGTT 59.915 57.895 15.36 0.00 0.00 3.67
2513 5045 4.748144 CTGGGGGCCTCTGGTTGC 62.748 72.222 4.32 0.00 0.00 4.17
2518 5364 4.666253 GGCCTCTGGTTGCAGCCA 62.666 66.667 21.99 21.99 43.32 4.75
2524 5370 4.666253 TGGTTGCAGCCAGCCTCC 62.666 66.667 19.51 0.00 42.33 4.30
2526 5372 3.060615 GTTGCAGCCAGCCTCCTG 61.061 66.667 0.00 0.00 44.83 3.86
2531 5377 3.345028 AGCCAGCCTCCTGCCAAT 61.345 61.111 0.00 0.00 42.71 3.16
2532 5378 2.002977 AGCCAGCCTCCTGCCAATA 61.003 57.895 0.00 0.00 42.71 1.90
2533 5379 1.825622 GCCAGCCTCCTGCCAATAC 60.826 63.158 0.00 0.00 42.71 1.89
2534 5380 1.524621 CCAGCCTCCTGCCAATACG 60.525 63.158 0.00 0.00 42.71 3.06
2535 5381 2.182842 CAGCCTCCTGCCAATACGC 61.183 63.158 0.00 0.00 42.71 4.42
2536 5382 2.902343 GCCTCCTGCCAATACGCC 60.902 66.667 0.00 0.00 0.00 5.68
2537 5383 2.588877 CCTCCTGCCAATACGCCG 60.589 66.667 0.00 0.00 0.00 6.46
2538 5384 3.272334 CTCCTGCCAATACGCCGC 61.272 66.667 0.00 0.00 0.00 6.53
2539 5385 3.740128 CTCCTGCCAATACGCCGCT 62.740 63.158 0.00 0.00 0.00 5.52
2540 5386 2.824041 CCTGCCAATACGCCGCTT 60.824 61.111 0.00 0.00 0.00 4.68
2541 5387 2.709475 CTGCCAATACGCCGCTTC 59.291 61.111 0.00 0.00 0.00 3.86
2542 5388 3.155470 CTGCCAATACGCCGCTTCG 62.155 63.158 0.00 0.00 0.00 3.79
2543 5389 4.591317 GCCAATACGCCGCTTCGC 62.591 66.667 0.00 0.00 0.00 4.70
2544 5390 3.192230 CCAATACGCCGCTTCGCA 61.192 61.111 0.00 0.00 0.00 5.10
2545 5391 2.534019 CCAATACGCCGCTTCGCAT 61.534 57.895 0.00 0.00 0.00 4.73
2546 5392 1.218875 CCAATACGCCGCTTCGCATA 61.219 55.000 0.00 0.00 0.00 3.14
2547 5393 0.161658 CAATACGCCGCTTCGCATAG 59.838 55.000 0.00 0.00 0.00 2.23
2548 5394 0.944311 AATACGCCGCTTCGCATAGG 60.944 55.000 0.00 0.00 0.00 2.57
2549 5395 2.083835 ATACGCCGCTTCGCATAGGT 62.084 55.000 0.00 0.00 0.00 3.08
2550 5396 2.947118 TACGCCGCTTCGCATAGGTG 62.947 60.000 0.00 0.00 39.91 4.00
2551 5397 3.272334 GCCGCTTCGCATAGGTGG 61.272 66.667 0.00 0.00 0.00 4.61
2552 5398 2.588877 CCGCTTCGCATAGGTGGG 60.589 66.667 0.00 0.00 39.47 4.61
2553 5399 3.272334 CGCTTCGCATAGGTGGGC 61.272 66.667 0.00 0.00 38.12 5.36
2559 5405 2.980233 GCATAGGTGGGCGCATCC 60.980 66.667 10.83 11.82 0.00 3.51
2560 5406 2.510411 CATAGGTGGGCGCATCCA 59.490 61.111 10.83 5.28 36.21 3.41
2561 5407 1.073722 CATAGGTGGGCGCATCCAT 59.926 57.895 10.83 0.00 39.26 3.41
2619 5849 6.227298 TCTCTAGTTCATTCCTCATGTTCC 57.773 41.667 0.00 0.00 34.06 3.62
2663 5893 3.828875 TGCTTCCCCGTTCAAAATTTT 57.171 38.095 0.00 0.00 0.00 1.82
2668 5898 6.425417 TGCTTCCCCGTTCAAAATTTTAAATC 59.575 34.615 2.44 0.00 0.00 2.17
2691 5921 4.620589 ATTTGGGAAAACATGCATGTGA 57.379 36.364 31.98 9.98 41.61 3.58
2710 5940 4.214545 TGTGATATTTTTGAAGTTCGGCGT 59.785 37.500 6.85 0.00 0.00 5.68
2726 5956 6.420008 AGTTCGGCGTATGATTGTTTAGATAC 59.580 38.462 6.85 0.00 0.00 2.24
2925 6158 6.169800 TCTTGTTCGATTTGTGGTATGATCA 58.830 36.000 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 12 6.343716 TCATTGTCACACCAAAATGCTATT 57.656 33.333 0.00 0.00 31.50 1.73
94 97 4.440663 GCCAGAAATCCAATTTGGCTCTAC 60.441 45.833 10.76 5.02 37.95 2.59
116 119 2.200337 AAACACCCCCTTTCTGCGC 61.200 57.895 0.00 0.00 0.00 6.09
117 120 1.659794 CAAACACCCCCTTTCTGCG 59.340 57.895 0.00 0.00 0.00 5.18
118 121 0.759060 ACCAAACACCCCCTTTCTGC 60.759 55.000 0.00 0.00 0.00 4.26
119 122 1.788229 AACCAAACACCCCCTTTCTG 58.212 50.000 0.00 0.00 0.00 3.02
120 123 2.755208 GCTAACCAAACACCCCCTTTCT 60.755 50.000 0.00 0.00 0.00 2.52
121 124 1.616865 GCTAACCAAACACCCCCTTTC 59.383 52.381 0.00 0.00 0.00 2.62
153 156 3.710044 CATGGTGGATGCGAGTCG 58.290 61.111 8.54 8.54 0.00 4.18
484 709 1.661509 GCAACGCTTGGACAAAGGC 60.662 57.895 0.00 0.00 36.30 4.35
498 723 1.090052 GGTAGGATCTGCCGTGCAAC 61.090 60.000 0.00 0.00 43.43 4.17
499 724 1.220749 GGTAGGATCTGCCGTGCAA 59.779 57.895 0.00 0.00 43.43 4.08
500 725 2.900273 GGTAGGATCTGCCGTGCA 59.100 61.111 0.00 0.00 43.43 4.57
507 732 3.043419 CGAGGGCGGTAGGATCTG 58.957 66.667 0.00 0.00 0.00 2.90
508 733 2.913060 GCGAGGGCGGTAGGATCT 60.913 66.667 0.00 0.00 38.16 2.75
526 751 2.510238 ATCCTCGCTTGCGACAGC 60.510 61.111 13.93 0.00 45.41 4.40
527 752 1.880340 GGATCCTCGCTTGCGACAG 60.880 63.158 13.93 8.57 0.00 3.51
528 753 2.184322 GGATCCTCGCTTGCGACA 59.816 61.111 13.93 4.11 0.00 4.35
529 754 2.167861 GTGGATCCTCGCTTGCGAC 61.168 63.158 14.23 4.32 0.00 5.19
530 755 1.035385 TAGTGGATCCTCGCTTGCGA 61.035 55.000 16.85 16.85 0.00 5.10
531 756 0.032678 ATAGTGGATCCTCGCTTGCG 59.967 55.000 14.23 8.87 0.00 4.85
532 757 1.069204 TGATAGTGGATCCTCGCTTGC 59.931 52.381 14.23 5.19 33.07 4.01
533 758 2.288702 CCTGATAGTGGATCCTCGCTTG 60.289 54.545 14.23 2.16 33.07 4.01
534 759 1.967066 CCTGATAGTGGATCCTCGCTT 59.033 52.381 14.23 0.00 33.07 4.68
535 760 1.626686 CCTGATAGTGGATCCTCGCT 58.373 55.000 14.23 10.86 33.07 4.93
536 761 0.037790 GCCTGATAGTGGATCCTCGC 60.038 60.000 14.23 3.39 33.07 5.03
537 762 0.605589 GGCCTGATAGTGGATCCTCG 59.394 60.000 14.23 0.00 33.07 4.63
538 763 1.722034 TGGCCTGATAGTGGATCCTC 58.278 55.000 14.23 9.81 33.07 3.71
539 764 2.158035 AGATGGCCTGATAGTGGATCCT 60.158 50.000 14.23 0.00 33.07 3.24
540 765 2.027377 CAGATGGCCTGATAGTGGATCC 60.027 54.545 4.20 4.20 45.78 3.36
541 766 2.636893 ACAGATGGCCTGATAGTGGATC 59.363 50.000 3.32 0.00 45.78 3.36
542 767 2.699160 ACAGATGGCCTGATAGTGGAT 58.301 47.619 3.32 0.00 45.78 3.41
543 768 2.180946 ACAGATGGCCTGATAGTGGA 57.819 50.000 3.32 0.00 45.78 4.02
544 769 2.968574 ACTACAGATGGCCTGATAGTGG 59.031 50.000 3.32 0.93 45.78 4.00
545 770 3.638627 TGACTACAGATGGCCTGATAGTG 59.361 47.826 3.32 0.00 45.78 2.74
546 771 3.916035 TGACTACAGATGGCCTGATAGT 58.084 45.455 3.32 4.88 45.78 2.12
547 772 4.380339 CGATGACTACAGATGGCCTGATAG 60.380 50.000 3.32 1.43 45.78 2.08
548 773 3.507622 CGATGACTACAGATGGCCTGATA 59.492 47.826 3.32 0.00 45.78 2.15
549 774 2.298446 CGATGACTACAGATGGCCTGAT 59.702 50.000 3.32 0.00 45.78 2.90
550 775 1.683385 CGATGACTACAGATGGCCTGA 59.317 52.381 3.32 0.00 45.78 3.86
552 777 1.959985 CTCGATGACTACAGATGGCCT 59.040 52.381 3.32 0.00 0.00 5.19
553 778 1.604185 GCTCGATGACTACAGATGGCC 60.604 57.143 0.00 0.00 0.00 5.36
554 779 1.604185 GGCTCGATGACTACAGATGGC 60.604 57.143 0.00 0.00 0.00 4.40
555 780 1.000283 GGGCTCGATGACTACAGATGG 60.000 57.143 0.00 0.00 0.00 3.51
556 781 1.000283 GGGGCTCGATGACTACAGATG 60.000 57.143 0.00 0.00 0.00 2.90
557 782 1.333177 GGGGCTCGATGACTACAGAT 58.667 55.000 0.00 0.00 0.00 2.90
558 783 0.033503 TGGGGCTCGATGACTACAGA 60.034 55.000 0.00 0.00 0.00 3.41
559 784 0.387202 CTGGGGCTCGATGACTACAG 59.613 60.000 0.00 0.00 0.00 2.74
560 785 0.033503 TCTGGGGCTCGATGACTACA 60.034 55.000 0.00 0.00 0.00 2.74
561 786 1.271102 GATCTGGGGCTCGATGACTAC 59.729 57.143 0.00 0.00 0.00 2.73
562 787 1.621992 GATCTGGGGCTCGATGACTA 58.378 55.000 0.00 0.00 0.00 2.59
563 788 1.118356 GGATCTGGGGCTCGATGACT 61.118 60.000 0.00 0.00 0.00 3.41
564 789 1.369321 GGATCTGGGGCTCGATGAC 59.631 63.158 0.00 0.00 0.00 3.06
577 802 1.125093 TGTGTTGGGTGACGGGATCT 61.125 55.000 0.00 0.00 0.00 2.75
583 808 1.355210 GCAACTGTGTTGGGTGACG 59.645 57.895 11.64 0.00 0.00 4.35
597 822 0.749454 AGGAATGCGGATCAGGCAAC 60.749 55.000 13.72 10.84 44.66 4.17
598 823 0.034186 AAGGAATGCGGATCAGGCAA 60.034 50.000 13.72 0.00 44.66 4.52
601 826 0.471617 AGGAAGGAATGCGGATCAGG 59.528 55.000 0.00 0.00 0.00 3.86
602 827 1.139654 TCAGGAAGGAATGCGGATCAG 59.860 52.381 0.00 0.00 0.00 2.90
603 828 1.203237 TCAGGAAGGAATGCGGATCA 58.797 50.000 0.00 0.00 0.00 2.92
609 834 3.022406 AGCTCAAATCAGGAAGGAATGC 58.978 45.455 0.00 0.00 0.00 3.56
611 836 8.667737 AGAATATAGCTCAAATCAGGAAGGAAT 58.332 33.333 0.00 0.00 0.00 3.01
614 839 7.448420 TCAGAATATAGCTCAAATCAGGAAGG 58.552 38.462 0.00 0.00 0.00 3.46
617 842 8.255111 TCTTCAGAATATAGCTCAAATCAGGA 57.745 34.615 0.00 0.00 0.00 3.86
626 851 5.465056 GTGCAGGTTCTTCAGAATATAGCTC 59.535 44.000 0.00 0.00 36.33 4.09
632 857 3.678056 ACGTGCAGGTTCTTCAGAATA 57.322 42.857 6.15 0.00 36.33 1.75
637 862 1.872237 GCTGTACGTGCAGGTTCTTCA 60.872 52.381 30.72 10.84 37.00 3.02
651 876 2.103094 TGTATGAGATGGCTGGCTGTAC 59.897 50.000 2.00 0.00 0.00 2.90
653 878 1.206878 TGTATGAGATGGCTGGCTGT 58.793 50.000 2.00 0.00 0.00 4.40
654 879 2.336945 TTGTATGAGATGGCTGGCTG 57.663 50.000 2.00 0.00 0.00 4.85
655 880 3.589951 ATTTGTATGAGATGGCTGGCT 57.410 42.857 2.00 0.00 0.00 4.75
656 881 4.660789 AAATTTGTATGAGATGGCTGGC 57.339 40.909 0.00 0.00 0.00 4.85
658 883 7.099266 TGGTAAAATTTGTATGAGATGGCTG 57.901 36.000 0.00 0.00 0.00 4.85
659 884 7.716799 TTGGTAAAATTTGTATGAGATGGCT 57.283 32.000 0.00 0.00 0.00 4.75
661 886 9.139174 GTGTTTGGTAAAATTTGTATGAGATGG 57.861 33.333 0.00 0.00 0.00 3.51
662 887 9.912634 AGTGTTTGGTAAAATTTGTATGAGATG 57.087 29.630 0.00 0.00 0.00 2.90
669 894 8.723311 CCGAGATAGTGTTTGGTAAAATTTGTA 58.277 33.333 0.00 0.00 0.00 2.41
670 895 7.590279 CCGAGATAGTGTTTGGTAAAATTTGT 58.410 34.615 0.00 0.00 0.00 2.83
671 896 6.526674 GCCGAGATAGTGTTTGGTAAAATTTG 59.473 38.462 0.00 0.00 0.00 2.32
672 897 6.433093 AGCCGAGATAGTGTTTGGTAAAATTT 59.567 34.615 0.00 0.00 0.00 1.82
673 898 5.944007 AGCCGAGATAGTGTTTGGTAAAATT 59.056 36.000 0.00 0.00 0.00 1.82
674 899 5.497474 AGCCGAGATAGTGTTTGGTAAAAT 58.503 37.500 0.00 0.00 0.00 1.82
675 900 4.901868 AGCCGAGATAGTGTTTGGTAAAA 58.098 39.130 0.00 0.00 0.00 1.52
676 901 4.020928 TGAGCCGAGATAGTGTTTGGTAAA 60.021 41.667 0.00 0.00 0.00 2.01
677 902 3.512329 TGAGCCGAGATAGTGTTTGGTAA 59.488 43.478 0.00 0.00 0.00 2.85
678 903 3.093814 TGAGCCGAGATAGTGTTTGGTA 58.906 45.455 0.00 0.00 0.00 3.25
679 904 1.899814 TGAGCCGAGATAGTGTTTGGT 59.100 47.619 0.00 0.00 0.00 3.67
680 905 2.672961 TGAGCCGAGATAGTGTTTGG 57.327 50.000 0.00 0.00 0.00 3.28
681 906 4.938080 ACTATGAGCCGAGATAGTGTTTG 58.062 43.478 0.00 0.00 34.70 2.93
682 907 5.352284 CAACTATGAGCCGAGATAGTGTTT 58.648 41.667 0.00 0.00 35.89 2.83
683 908 4.737946 GCAACTATGAGCCGAGATAGTGTT 60.738 45.833 0.00 0.00 35.89 3.32
684 909 3.243569 GCAACTATGAGCCGAGATAGTGT 60.244 47.826 0.00 0.00 35.89 3.55
685 910 3.243535 TGCAACTATGAGCCGAGATAGTG 60.244 47.826 0.00 0.00 35.89 2.74
686 911 2.959030 TGCAACTATGAGCCGAGATAGT 59.041 45.455 0.00 0.00 37.04 2.12
687 912 3.650070 TGCAACTATGAGCCGAGATAG 57.350 47.619 0.00 0.00 0.00 2.08
688 913 3.366374 CGATGCAACTATGAGCCGAGATA 60.366 47.826 0.00 0.00 0.00 1.98
689 914 2.608998 CGATGCAACTATGAGCCGAGAT 60.609 50.000 0.00 0.00 0.00 2.75
690 915 1.269257 CGATGCAACTATGAGCCGAGA 60.269 52.381 0.00 0.00 0.00 4.04
691 916 1.135046 CGATGCAACTATGAGCCGAG 58.865 55.000 0.00 0.00 0.00 4.63
692 917 0.249447 CCGATGCAACTATGAGCCGA 60.249 55.000 0.00 0.00 0.00 5.54
693 918 1.835483 GCCGATGCAACTATGAGCCG 61.835 60.000 0.00 0.00 37.47 5.52
694 919 0.533755 AGCCGATGCAACTATGAGCC 60.534 55.000 0.00 0.00 41.13 4.70
695 920 0.864455 GAGCCGATGCAACTATGAGC 59.136 55.000 0.00 0.00 41.13 4.26
696 921 2.229675 TGAGCCGATGCAACTATGAG 57.770 50.000 0.00 0.00 41.13 2.90
697 922 2.279741 GTTGAGCCGATGCAACTATGA 58.720 47.619 0.00 0.00 40.79 2.15
698 923 1.331756 GGTTGAGCCGATGCAACTATG 59.668 52.381 0.00 0.00 42.90 2.23
699 924 1.065491 TGGTTGAGCCGATGCAACTAT 60.065 47.619 0.00 0.00 42.90 2.12
700 925 0.323302 TGGTTGAGCCGATGCAACTA 59.677 50.000 0.00 0.00 42.90 2.24
701 926 0.957395 CTGGTTGAGCCGATGCAACT 60.957 55.000 0.00 0.00 42.90 3.16
702 927 1.503542 CTGGTTGAGCCGATGCAAC 59.496 57.895 0.00 0.00 42.67 4.17
703 928 1.675310 CCTGGTTGAGCCGATGCAA 60.675 57.895 0.00 0.00 41.13 4.08
704 929 2.046023 CCTGGTTGAGCCGATGCA 60.046 61.111 0.00 0.00 41.13 3.96
705 930 3.512516 GCCTGGTTGAGCCGATGC 61.513 66.667 0.00 0.00 41.21 3.91
706 931 2.825836 GGCCTGGTTGAGCCGATG 60.826 66.667 0.00 0.00 39.87 3.84
711 936 1.968540 GAGTGTGGCCTGGTTGAGC 60.969 63.158 3.32 0.00 0.00 4.26
712 937 0.037303 ATGAGTGTGGCCTGGTTGAG 59.963 55.000 3.32 0.00 0.00 3.02
713 938 0.036732 GATGAGTGTGGCCTGGTTGA 59.963 55.000 3.32 0.00 0.00 3.18
714 939 0.962356 GGATGAGTGTGGCCTGGTTG 60.962 60.000 3.32 0.00 0.00 3.77
715 940 1.380302 GGATGAGTGTGGCCTGGTT 59.620 57.895 3.32 0.00 0.00 3.67
716 941 1.845627 CTGGATGAGTGTGGCCTGGT 61.846 60.000 3.32 0.00 0.00 4.00
717 942 1.077930 CTGGATGAGTGTGGCCTGG 60.078 63.158 3.32 0.00 0.00 4.45
718 943 1.748122 GCTGGATGAGTGTGGCCTG 60.748 63.158 3.32 0.00 0.00 4.85
719 944 1.569030 ATGCTGGATGAGTGTGGCCT 61.569 55.000 3.32 0.00 0.00 5.19
720 945 1.077212 ATGCTGGATGAGTGTGGCC 60.077 57.895 0.00 0.00 0.00 5.36
721 946 1.099879 GGATGCTGGATGAGTGTGGC 61.100 60.000 0.00 0.00 0.00 5.01
722 947 0.465097 GGGATGCTGGATGAGTGTGG 60.465 60.000 0.00 0.00 0.00 4.17
723 948 0.545171 AGGGATGCTGGATGAGTGTG 59.455 55.000 0.00 0.00 0.00 3.82
724 949 0.835941 GAGGGATGCTGGATGAGTGT 59.164 55.000 0.00 0.00 0.00 3.55
725 950 0.835276 TGAGGGATGCTGGATGAGTG 59.165 55.000 0.00 0.00 0.00 3.51
726 951 1.420514 CATGAGGGATGCTGGATGAGT 59.579 52.381 0.00 0.00 0.00 3.41
727 952 2.186532 CATGAGGGATGCTGGATGAG 57.813 55.000 0.00 0.00 0.00 2.90
736 961 1.806461 GCTGCATGGCATGAGGGATG 61.806 60.000 30.69 13.08 38.13 3.51
737 962 1.530891 GCTGCATGGCATGAGGGAT 60.531 57.895 30.69 0.00 38.13 3.85
738 963 2.124024 GCTGCATGGCATGAGGGA 60.124 61.111 30.69 9.83 38.13 4.20
739 964 2.347691 TAGGCTGCATGGCATGAGGG 62.348 60.000 30.69 18.51 44.55 4.30
740 965 0.466739 TTAGGCTGCATGGCATGAGG 60.467 55.000 30.69 20.84 44.55 3.86
741 966 1.337071 CTTTAGGCTGCATGGCATGAG 59.663 52.381 30.69 22.79 44.55 2.90
742 967 1.395635 CTTTAGGCTGCATGGCATGA 58.604 50.000 30.69 14.44 44.55 3.07
743 968 0.249322 GCTTTAGGCTGCATGGCATG 60.249 55.000 22.99 22.99 44.55 4.06
744 969 2.121645 GCTTTAGGCTGCATGGCAT 58.878 52.632 0.50 0.00 44.55 4.40
745 970 3.607163 GCTTTAGGCTGCATGGCA 58.393 55.556 0.50 0.00 44.55 4.92
754 979 0.916809 TTCCCTGGGTAGCTTTAGGC 59.083 55.000 13.56 0.00 42.19 3.93
755 980 1.212195 GGTTCCCTGGGTAGCTTTAGG 59.788 57.143 13.56 0.00 0.00 2.69
756 981 1.913419 TGGTTCCCTGGGTAGCTTTAG 59.087 52.381 20.18 0.00 0.00 1.85
757 982 2.047769 TGGTTCCCTGGGTAGCTTTA 57.952 50.000 20.18 0.07 0.00 1.85
758 983 1.154430 TTGGTTCCCTGGGTAGCTTT 58.846 50.000 20.18 0.00 0.00 3.51
759 984 1.154430 TTTGGTTCCCTGGGTAGCTT 58.846 50.000 20.18 0.00 0.00 3.74
760 985 0.404426 GTTTGGTTCCCTGGGTAGCT 59.596 55.000 20.18 0.00 0.00 3.32
761 986 0.111639 TGTTTGGTTCCCTGGGTAGC 59.888 55.000 13.56 13.78 0.00 3.58
762 987 1.880646 CGTGTTTGGTTCCCTGGGTAG 60.881 57.143 13.56 0.00 0.00 3.18
763 988 0.108963 CGTGTTTGGTTCCCTGGGTA 59.891 55.000 13.56 0.00 0.00 3.69
764 989 1.152839 CGTGTTTGGTTCCCTGGGT 60.153 57.895 13.56 0.00 0.00 4.51
765 990 2.561037 GCGTGTTTGGTTCCCTGGG 61.561 63.158 6.33 6.33 0.00 4.45
766 991 2.561037 GGCGTGTTTGGTTCCCTGG 61.561 63.158 0.00 0.00 0.00 4.45
767 992 2.561037 GGGCGTGTTTGGTTCCCTG 61.561 63.158 0.00 0.00 34.19 4.45
768 993 2.203437 GGGCGTGTTTGGTTCCCT 60.203 61.111 0.00 0.00 34.19 4.20
769 994 1.677637 TTTGGGCGTGTTTGGTTCCC 61.678 55.000 0.00 0.00 37.49 3.97
770 995 0.249280 CTTTGGGCGTGTTTGGTTCC 60.249 55.000 0.00 0.00 0.00 3.62
771 996 0.458260 ACTTTGGGCGTGTTTGGTTC 59.542 50.000 0.00 0.00 0.00 3.62
772 997 0.174617 CACTTTGGGCGTGTTTGGTT 59.825 50.000 0.00 0.00 0.00 3.67
773 998 0.681564 TCACTTTGGGCGTGTTTGGT 60.682 50.000 0.00 0.00 34.14 3.67
774 999 0.457851 TTCACTTTGGGCGTGTTTGG 59.542 50.000 0.00 0.00 34.14 3.28
775 1000 2.507339 ATTCACTTTGGGCGTGTTTG 57.493 45.000 0.00 0.00 34.14 2.93
776 1001 3.634910 ACTTATTCACTTTGGGCGTGTTT 59.365 39.130 0.00 0.00 34.14 2.83
777 1002 3.004315 CACTTATTCACTTTGGGCGTGTT 59.996 43.478 0.00 0.00 34.14 3.32
778 1003 2.552315 CACTTATTCACTTTGGGCGTGT 59.448 45.455 0.00 0.00 34.14 4.49
779 1004 2.668279 GCACTTATTCACTTTGGGCGTG 60.668 50.000 0.00 0.00 0.00 5.34
780 1005 1.539827 GCACTTATTCACTTTGGGCGT 59.460 47.619 0.00 0.00 0.00 5.68
784 1009 8.641499 TTTGTTTTAGCACTTATTCACTTTGG 57.359 30.769 0.00 0.00 0.00 3.28
1526 3647 2.910977 GGTCTTCTTCTTGGGGGACTTA 59.089 50.000 0.00 0.00 0.00 2.24
1550 3671 0.678048 CCTGCTACTCTTTGGTGGCC 60.678 60.000 0.00 0.00 41.88 5.36
1559 3680 1.124477 GCTATGGGGCCTGCTACTCT 61.124 60.000 0.84 0.00 0.00 3.24
1567 3692 1.385915 TGGCTAAGCTATGGGGCCT 60.386 57.895 0.84 0.00 42.84 5.19
1569 3697 0.536006 CACTGGCTAAGCTATGGGGC 60.536 60.000 0.00 0.00 0.00 5.80
1666 3799 1.872952 CAATGTCAACCTTGCTCGTCA 59.127 47.619 0.00 0.00 0.00 4.35
1668 3801 1.603802 CACAATGTCAACCTTGCTCGT 59.396 47.619 0.00 0.00 0.00 4.18
1678 3811 7.281549 CCATTCTCACTGATATCACAATGTCAA 59.718 37.037 0.00 0.06 33.25 3.18
1691 3830 4.820716 GCATCTTTAGCCATTCTCACTGAT 59.179 41.667 0.00 0.00 0.00 2.90
1694 3833 4.226427 TGCATCTTTAGCCATTCTCACT 57.774 40.909 0.00 0.00 0.00 3.41
1756 3945 2.221169 TCTTCAGACGCAAATGCAAGT 58.779 42.857 6.18 0.00 42.21 3.16
1758 3947 3.004629 ACAATCTTCAGACGCAAATGCAA 59.995 39.130 6.18 0.00 42.21 4.08
1764 3953 7.657354 AGCATATATAACAATCTTCAGACGCAA 59.343 33.333 0.00 0.00 0.00 4.85
1766 3955 7.588143 AGCATATATAACAATCTTCAGACGC 57.412 36.000 0.00 0.00 0.00 5.19
1777 3969 9.188588 GTAGCACGAGTAAAGCATATATAACAA 57.811 33.333 0.00 0.00 0.00 2.83
1780 3972 7.809665 TCGTAGCACGAGTAAAGCATATATAA 58.190 34.615 7.20 0.00 46.73 0.98
1783 3975 5.678132 TCGTAGCACGAGTAAAGCATATA 57.322 39.130 7.20 0.00 46.73 0.86
1796 3988 3.921021 AGAACAGAGAATTTCGTAGCACG 59.079 43.478 2.79 2.79 44.19 5.34
1799 3991 5.408356 TGGTAGAACAGAGAATTTCGTAGC 58.592 41.667 0.00 0.00 0.00 3.58
1814 4006 5.890424 TGGAAATTTTCGGATGGTAGAAC 57.110 39.130 3.17 0.00 0.00 3.01
1854 4056 6.166984 TGATAGGAATAGGCTTGAAGTGAG 57.833 41.667 0.00 0.00 0.00 3.51
1866 4085 6.541641 AGTTTTCTGCAGCTTGATAGGAATAG 59.458 38.462 9.47 0.00 0.00 1.73
1884 4103 9.377312 GCTAGTTCTTCATAGATTCAGTTTTCT 57.623 33.333 0.00 0.00 0.00 2.52
1886 4112 9.732130 AAGCTAGTTCTTCATAGATTCAGTTTT 57.268 29.630 0.00 0.00 0.00 2.43
1911 4137 7.894753 TCCAAGCACCATCATCAATTTATAA 57.105 32.000 0.00 0.00 0.00 0.98
1912 4138 9.585369 TTATCCAAGCACCATCATCAATTTATA 57.415 29.630 0.00 0.00 0.00 0.98
1913 4139 6.989155 ATCCAAGCACCATCATCAATTTAT 57.011 33.333 0.00 0.00 0.00 1.40
1916 4142 6.401047 CTTATCCAAGCACCATCATCAATT 57.599 37.500 0.00 0.00 0.00 2.32
1964 4250 6.925610 TGGTCAAGATCTAATTCGAAATGG 57.074 37.500 0.00 0.00 0.00 3.16
1997 4284 4.161565 ACAGAGGTTACATCGCTTATCCAA 59.838 41.667 0.00 0.00 0.00 3.53
1999 4286 4.323553 ACAGAGGTTACATCGCTTATCC 57.676 45.455 0.00 0.00 0.00 2.59
2000 4287 6.074544 ACTACAGAGGTTACATCGCTTATC 57.925 41.667 0.00 0.00 0.00 1.75
2001 4288 6.273825 CAACTACAGAGGTTACATCGCTTAT 58.726 40.000 0.00 0.00 0.00 1.73
2002 4289 5.647589 CAACTACAGAGGTTACATCGCTTA 58.352 41.667 0.00 0.00 0.00 3.09
2006 4293 4.106197 GAGCAACTACAGAGGTTACATCG 58.894 47.826 0.00 0.00 0.00 3.84
2007 4294 5.105752 CAGAGCAACTACAGAGGTTACATC 58.894 45.833 0.00 0.00 0.00 3.06
2026 4326 9.979270 CTGCAAGTATTATTTTGTTAGACAGAG 57.021 33.333 0.00 0.00 0.00 3.35
2049 4388 1.467734 CATCAGCTCAACTCCAACTGC 59.532 52.381 0.00 0.00 0.00 4.40
2065 4411 2.320745 ACTTCAGATCGCATGCATCA 57.679 45.000 19.57 0.28 0.00 3.07
2068 4414 1.469703 CCAAACTTCAGATCGCATGCA 59.530 47.619 19.57 5.34 0.00 3.96
2069 4415 1.739466 TCCAAACTTCAGATCGCATGC 59.261 47.619 7.91 7.91 0.00 4.06
2111 4501 5.018809 ACATCATCTGGCCTGTTGTTTTAT 58.981 37.500 17.35 4.32 0.00 1.40
2193 4591 2.637947 GACTCTTTGAAGGGCCTGATC 58.362 52.381 6.92 1.58 0.00 2.92
2194 4592 1.283321 GGACTCTTTGAAGGGCCTGAT 59.717 52.381 6.92 0.00 0.00 2.90
2221 4633 3.049912 GCACTCCGGTGAAAAACATTTC 58.950 45.455 11.17 0.00 45.61 2.17
2229 4641 0.179234 TCTTGTGCACTCCGGTGAAA 59.821 50.000 19.41 0.00 45.61 2.69
2257 4669 5.010617 GGAATCTTGTGCACTCCCTTAAAAA 59.989 40.000 19.41 0.00 0.00 1.94
2258 4670 4.522789 GGAATCTTGTGCACTCCCTTAAAA 59.477 41.667 19.41 0.00 0.00 1.52
2259 4671 4.079253 GGAATCTTGTGCACTCCCTTAAA 58.921 43.478 19.41 0.54 0.00 1.52
2260 4672 3.330701 AGGAATCTTGTGCACTCCCTTAA 59.669 43.478 19.41 1.33 0.00 1.85
2261 4673 2.912956 AGGAATCTTGTGCACTCCCTTA 59.087 45.455 19.41 0.00 0.00 2.69
2262 4674 1.707427 AGGAATCTTGTGCACTCCCTT 59.293 47.619 19.41 6.70 0.00 3.95
2263 4675 1.004044 CAGGAATCTTGTGCACTCCCT 59.996 52.381 19.41 11.60 0.00 4.20
2264 4676 1.457346 CAGGAATCTTGTGCACTCCC 58.543 55.000 19.41 9.59 0.00 4.30
2265 4677 1.457346 CCAGGAATCTTGTGCACTCC 58.543 55.000 19.41 15.78 0.00 3.85
2266 4678 1.271597 ACCCAGGAATCTTGTGCACTC 60.272 52.381 19.41 6.44 0.00 3.51
2267 4679 0.773644 ACCCAGGAATCTTGTGCACT 59.226 50.000 19.41 0.00 0.00 4.40
2268 4680 2.489938 TACCCAGGAATCTTGTGCAC 57.510 50.000 10.75 10.75 0.00 4.57
2269 4681 3.517296 TTTACCCAGGAATCTTGTGCA 57.483 42.857 0.00 0.00 0.00 4.57
2270 4682 5.450550 GCTTATTTACCCAGGAATCTTGTGC 60.451 44.000 0.00 0.00 0.00 4.57
2271 4683 5.652014 TGCTTATTTACCCAGGAATCTTGTG 59.348 40.000 0.00 0.00 0.00 3.33
2272 4684 5.826643 TGCTTATTTACCCAGGAATCTTGT 58.173 37.500 0.00 0.00 0.00 3.16
2273 4685 6.378280 ACTTGCTTATTTACCCAGGAATCTTG 59.622 38.462 0.00 0.00 0.00 3.02
2274 4686 6.494059 ACTTGCTTATTTACCCAGGAATCTT 58.506 36.000 0.00 0.00 0.00 2.40
2275 4687 6.079712 ACTTGCTTATTTACCCAGGAATCT 57.920 37.500 0.00 0.00 0.00 2.40
2276 4688 6.377146 TCAACTTGCTTATTTACCCAGGAATC 59.623 38.462 0.00 0.00 0.00 2.52
2277 4689 6.252995 TCAACTTGCTTATTTACCCAGGAAT 58.747 36.000 0.00 0.00 0.00 3.01
2332 4746 9.168451 TGTTGTACTCATCAGTTTTACAGAAAA 57.832 29.630 0.00 0.00 33.62 2.29
2463 4979 5.124457 GCAAGAGAGAAAATGATGCTAACCA 59.876 40.000 0.00 0.00 0.00 3.67
2464 4980 5.356470 AGCAAGAGAGAAAATGATGCTAACC 59.644 40.000 0.00 0.00 40.56 2.85
2468 4984 4.966965 CAGCAAGAGAGAAAATGATGCT 57.033 40.909 0.00 0.00 42.90 3.79
2469 4985 3.436496 GCAGCAAGAGAGAAAATGATGC 58.564 45.455 0.00 0.00 46.11 3.91
2470 4986 4.082949 TGTGCAGCAAGAGAGAAAATGATG 60.083 41.667 0.00 0.00 32.64 3.07
2472 4988 3.479489 TGTGCAGCAAGAGAGAAAATGA 58.521 40.909 0.00 0.00 0.00 2.57
2473 4989 3.909776 TGTGCAGCAAGAGAGAAAATG 57.090 42.857 0.00 0.00 0.00 2.32
2489 5005 2.193248 GAGGCCCCCAGTATGTGC 59.807 66.667 0.00 0.00 0.00 4.57
2496 5028 4.748144 GCAACCAGAGGCCCCCAG 62.748 72.222 0.00 0.00 0.00 4.45
2508 5040 4.357279 AGGAGGCTGGCTGCAACC 62.357 66.667 23.72 18.14 45.15 3.77
2518 5364 2.190578 GCGTATTGGCAGGAGGCT 59.809 61.111 7.80 0.00 44.01 4.58
2519 5365 2.902343 GGCGTATTGGCAGGAGGC 60.902 66.667 6.80 6.80 44.08 4.70
2522 5368 3.323758 AAGCGGCGTATTGGCAGGA 62.324 57.895 9.37 0.00 45.16 3.86
2523 5369 2.823829 GAAGCGGCGTATTGGCAGG 61.824 63.158 9.37 0.00 45.16 4.85
2524 5370 2.709475 GAAGCGGCGTATTGGCAG 59.291 61.111 9.37 0.00 45.16 4.85
2542 5388 2.980233 GGATGCGCCCACCTATGC 60.980 66.667 4.18 0.00 0.00 3.14
2543 5389 1.073722 ATGGATGCGCCCACCTATG 59.926 57.895 7.60 0.00 39.34 2.23
2544 5390 1.073722 CATGGATGCGCCCACCTAT 59.926 57.895 7.60 0.00 39.34 2.57
2545 5391 2.510411 CATGGATGCGCCCACCTA 59.490 61.111 7.60 0.00 39.34 3.08
2555 5401 5.266788 AGAATATTATGGTGGGCATGGATG 58.733 41.667 0.00 0.00 0.00 3.51
2556 5402 5.254737 AGAGAATATTATGGTGGGCATGGAT 59.745 40.000 0.00 0.00 0.00 3.41
2557 5403 4.603171 AGAGAATATTATGGTGGGCATGGA 59.397 41.667 0.00 0.00 0.00 3.41
2558 5404 4.927049 AGAGAATATTATGGTGGGCATGG 58.073 43.478 0.00 0.00 0.00 3.66
2559 5405 6.906157 AAAGAGAATATTATGGTGGGCATG 57.094 37.500 0.00 0.00 0.00 4.06
2560 5406 9.605951 AAATAAAGAGAATATTATGGTGGGCAT 57.394 29.630 0.00 0.00 0.00 4.40
2561 5407 9.432982 AAAATAAAGAGAATATTATGGTGGGCA 57.567 29.630 0.00 0.00 0.00 5.36
2574 5420 9.737844 AGAGAAGCAGAAGAAAATAAAGAGAAT 57.262 29.630 0.00 0.00 0.00 2.40
2605 5835 1.439353 CCGCCGGAACATGAGGAATG 61.439 60.000 5.05 0.00 42.48 2.67
2619 5849 0.800631 GGAGAAAAGTTAACCCGCCG 59.199 55.000 0.88 0.00 0.00 6.46
2663 5893 8.538701 ACATGCATGTTTTCCCAAATAGATTTA 58.461 29.630 26.61 0.00 37.90 1.40
2668 5898 5.722263 TCACATGCATGTTTTCCCAAATAG 58.278 37.500 29.48 13.56 39.39 1.73
2683 5913 6.092092 CCGAACTTCAAAAATATCACATGCA 58.908 36.000 0.00 0.00 0.00 3.96
2691 5921 6.671614 TCATACGCCGAACTTCAAAAATAT 57.328 33.333 0.00 0.00 0.00 1.28
2710 5940 8.958119 AAGCGGAAAGTATCTAAACAATCATA 57.042 30.769 0.00 0.00 0.00 2.15
2726 5956 5.561199 GCTTGTTTTTCTAAAGCGGAAAG 57.439 39.130 0.00 0.00 37.21 2.62
2886 6119 4.083643 CGAACAAGAATCACAACTCATGCT 60.084 41.667 0.00 0.00 0.00 3.79
2904 6137 6.205658 TGTTTGATCATACCACAAATCGAACA 59.794 34.615 12.93 11.21 44.43 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.