AutoCloner

Multiple sequence alignment - TraesCS6B01G082400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G082400	chr6B	100.000	2531	0	0	1	2531	59231806	59234336	0.000000e+00	4674
1	TraesCS6B01G082400	chr6B	90.111	1618	122	27	1	1594	28518333	28516730	0.000000e+00	2067
2	TraesCS6B01G082400	chr6B	89.261	866	52	19	758	1594	28925785	28926638	0.000000e+00	1046
3	TraesCS6B01G082400	chr6B	91.131	778	43	17	829	1594	59294779	59295542	0.000000e+00	1031
4	TraesCS6B01G082400	chr6B	90.862	777	46	19	829	1594	28713892	28714654	0.000000e+00	1018
5	TraesCS6B01G082400	chr6B	92.782	665	38	7	876	1535	29068514	29067855	0.000000e+00	953
6	TraesCS6B01G082400	chr6B	85.942	377	52	1	1	377	324128481	324128106	3.920000e-108	401
7	TraesCS6B01G082400	chr6B	89.062	128	13	1	375	501	28257761	28257634	9.370000e-35	158
8	TraesCS6B01G082400	chr6A	87.050	1027	82	30	597	1586	16659104	16658092	0.000000e+00	1112
9	TraesCS6B01G082400	chr6A	86.013	908	60	28	1641	2531	16684778	16685635	0.000000e+00	911
10	TraesCS6B01G082400	chr6A	87.068	781	61	30	829	1590	16700813	16701572	0.000000e+00	846
11	TraesCS6B01G082400	chr6A	91.745	424	25	8	1215	1636	16683683	16684098	4.690000e-162	580
12	TraesCS6B01G082400	chr6D	87.789	909	63	22	1640	2531	16504208	16505085	0.000000e+00	1020
13	TraesCS6B01G082400	chr6D	89.637	772	59	13	873	1636	16502790	16503548	0.000000e+00	963
14	TraesCS6B01G082400	chr6D	88.086	789	58	22	829	1594	16510591	16511366	0.000000e+00	904
15	TraesCS6B01G082400	chr6D	87.752	743	61	20	812	1535	16529703	16528972	0.000000e+00	841
16	TraesCS6B01G082400	chr6D	88.800	125	13	1	375	498	16309108	16308984	4.360000e-33	152
17	TraesCS6B01G082400	chr6D	93.333	90	6	0	503	592	16391541	16391452	1.580000e-27	134
18	TraesCS6B01G082400	chr3A	85.040	869	73	39	756	1594	66249746	66250587	0.000000e+00	832
19	TraesCS6B01G082400	chr2D	89.362	376	40	0	1	376	313498426	313498051	8.190000e-130	473
20	TraesCS6B01G082400	chr7A	87.200	375	38	6	11	376	495606787	495606414	3.890000e-113	418
21	TraesCS6B01G082400	chr1A	86.207	377	50	2	1	376	366105790	366106165	8.430000e-110	407
22	TraesCS6B01G082400	chr4B	86.612	366	49	0	11	376	161230104	161229739	3.030000e-109	405
23	TraesCS6B01G082400	chr1B	86.053	380	49	2	1	376	82771325	82770946	3.030000e-109	405
24	TraesCS6B01G082400	chr5B	86.339	366	50	0	11	376	129712116	129712481	1.410000e-107	399
25	TraesCS6B01G082400	chr3B	85.638	376	52	2	1	376	162943663	162944036	6.560000e-106	394

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G082400	chr6B	59231806	59234336	2530	False	4674.0	4674	100.000	1	2531	1	chr6B.!!$F3	2530
1	TraesCS6B01G082400	chr6B	28516730	28518333	1603	True	2067.0	2067	90.111	1	1594	1	chr6B.!!$R2	1593
2	TraesCS6B01G082400	chr6B	28925785	28926638	853	False	1046.0	1046	89.261	758	1594	1	chr6B.!!$F2	836
3	TraesCS6B01G082400	chr6B	59294779	59295542	763	False	1031.0	1031	91.131	829	1594	1	chr6B.!!$F4	765
4	TraesCS6B01G082400	chr6B	28713892	28714654	762	False	1018.0	1018	90.862	829	1594	1	chr6B.!!$F1	765
5	TraesCS6B01G082400	chr6B	29067855	29068514	659	True	953.0	953	92.782	876	1535	1	chr6B.!!$R3	659
6	TraesCS6B01G082400	chr6A	16658092	16659104	1012	True	1112.0	1112	87.050	597	1586	1	chr6A.!!$R1	989
7	TraesCS6B01G082400	chr6A	16700813	16701572	759	False	846.0	846	87.068	829	1590	1	chr6A.!!$F1	761
8	TraesCS6B01G082400	chr6A	16683683	16685635	1952	False	745.5	911	88.879	1215	2531	2	chr6A.!!$F2	1316
9	TraesCS6B01G082400	chr6D	16502790	16505085	2295	False	991.5	1020	88.713	873	2531	2	chr6D.!!$F2	1658
10	TraesCS6B01G082400	chr6D	16510591	16511366	775	False	904.0	904	88.086	829	1594	1	chr6D.!!$F1	765
11	TraesCS6B01G082400	chr6D	16528972	16529703	731	True	841.0	841	87.752	812	1535	1	chr6D.!!$R3	723
12	TraesCS6B01G082400	chr3A	66249746	66250587	841	False	832.0	832	85.040	756	1594	1	chr3A.!!$F1	838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
206	207	0.241749	TACTACAGCCAACGTCGGTG	59.758	55.0	2.42	2.42	0.0	4.94	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1624	1717	0.468226	TTATGCCGCTAAGGACAGGG	59.532	55.0	0.0	0.0	45.0	4.45	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
53	54	0.320421	TTCCCAGACAACGCTACTGC	60.320	55.000	0.00	0.00	0.00	4.40
71	72	4.023980	ACTGCTATGGTGCTCAGTAGTAA	58.976	43.478	0.00	0.00	37.94	2.24
73	74	3.181490	TGCTATGGTGCTCAGTAGTAACG	60.181	47.826	0.00	0.00	0.00	3.18
79	80	2.662156	GTGCTCAGTAGTAACGCTTGTC	59.338	50.000	0.00	0.00	0.00	3.18
109	110	2.743553	GCTACTACTAAGTGGGTCCCA	58.256	52.381	6.47	6.47	36.36	4.37
120	121	2.116238	GTGGGTCCCATTAGCAGTAGA	58.884	52.381	15.49	0.00	35.28	2.59
121	122	2.103263	GTGGGTCCCATTAGCAGTAGAG	59.897	54.545	15.49	0.00	35.28	2.43
138	139	5.529060	CAGTAGAGGAGTTTTCAAAGCAAGT	59.471	40.000	0.00	0.00	0.00	3.16
140	141	3.067320	AGAGGAGTTTTCAAAGCAAGTGC	59.933	43.478	0.00	0.00	42.49	4.40
206	207	0.241749	TACTACAGCCAACGTCGGTG	59.758	55.000	2.42	2.42	0.00	4.94
212	213	4.308458	CCAACGTCGGTGGGCTCA	62.308	66.667	22.15	0.00	28.13	4.26
233	234	4.408921	TCATTGGGTCCCACTTATCAGTAG	59.591	45.833	11.24	0.00	30.78	2.57
235	236	2.116238	GGGTCCCACTTATCAGTAGCA	58.884	52.381	1.78	0.00	0.00	3.49
268	269	2.103094	TCCAGCGCTACTGCTAAATCAT	59.897	45.455	10.99	0.00	45.23	2.45
278	279	7.096023	CGCTACTGCTAAATCATTACTTGTAGG	60.096	40.741	0.00	0.00	36.97	3.18
280	281	6.958767	ACTGCTAAATCATTACTTGTAGGGT	58.041	36.000	0.00	0.00	0.00	4.34
285	286	3.359695	TCATTACTTGTAGGGTTGCCC	57.640	47.619	0.00	0.00	45.90	5.36
370	371	6.497259	TGTCCTACCTATAAGCATTTCCCTAG	59.503	42.308	0.00	0.00	0.00	3.02
420	424	6.549433	TGGTTATCGGAGTATTTAACCACT	57.451	37.500	13.51	0.00	45.24	4.00
475	480	8.639428	GTTCTTCAAAAGTCACACTTTCTTTTC	58.361	33.333	2.19	0.00	46.78	2.29
554	560	3.368323	CCACACAAAAATGTATGCCCCTC	60.368	47.826	0.00	0.00	0.00	4.30
555	561	3.511146	CACACAAAAATGTATGCCCCTCT	59.489	43.478	0.00	0.00	0.00	3.69
569	575	1.679680	CCCCTCTTGCAATGCACATAG	59.320	52.381	7.72	2.77	38.71	2.23
617	623	4.935808	GGTATTGATAGCCACTTAATCCCG	59.064	45.833	0.00	0.00	0.00	5.14
619	625	4.336889	TTGATAGCCACTTAATCCCGAG	57.663	45.455	0.00	0.00	0.00	4.63
628	634	4.511826	CCACTTAATCCCGAGTAGCAATTC	59.488	45.833	0.00	0.00	0.00	2.17
629	635	5.116180	CACTTAATCCCGAGTAGCAATTCA	58.884	41.667	0.00	0.00	0.00	2.57
637	643	4.625742	CCCGAGTAGCAATTCAATATACGG	59.374	45.833	0.00	0.00	36.09	4.02
668	676	6.117975	ACAAAATCAGAATTGAAGCCCATT	57.882	33.333	6.37	0.00	36.78	3.16
714	723	3.908476	TGCCCATTTCAATACATAGGCA	58.092	40.909	0.00	0.00	46.39	4.75
747	756	7.495279	TGGTTTTGAACTCAATTTCAATTCCAG	59.505	33.333	13.42	0.00	43.38	3.86
803	816	2.501610	GCTCCCACGGATCACTCC	59.498	66.667	0.00	0.00	38.29	3.85
1532	1616	4.148825	CGCCGCCAAGGAGTAGCT	62.149	66.667	0.00	0.00	45.00	3.32
1534	1618	2.512515	CCGCCAAGGAGTAGCTGC	60.513	66.667	0.00	0.00	45.00	5.25
1535	1619	2.581354	CGCCAAGGAGTAGCTGCT	59.419	61.111	3.08	3.08	32.35	4.24
1536	1620	1.520342	CGCCAAGGAGTAGCTGCTC	60.520	63.158	22.31	22.31	28.86	4.26
1537	1621	1.520342	GCCAAGGAGTAGCTGCTCG	60.520	63.158	23.25	12.01	36.41	5.03
1538	1622	1.520342	CCAAGGAGTAGCTGCTCGC	60.520	63.158	23.25	16.55	36.41	5.03
1541	1628	3.461773	GGAGTAGCTGCTCGCCCA	61.462	66.667	23.25	0.00	40.39	5.36
1569	1661	0.961753	GCCTAGCCTTTGTTGCTTGT	59.038	50.000	0.00	0.00	40.23	3.16
1590	1683	4.761739	TGTTCCATTTCTCATGGACAAGAC	59.238	41.667	2.90	0.52	46.90	3.01
1620	1713	9.706691	CAGTCTTTTGGTTAGTTAGATGAGTAA	57.293	33.333	0.00	0.00	0.00	2.24
1624	1717	7.859325	TTTGGTTAGTTAGATGAGTAATGGC	57.141	36.000	0.00	0.00	0.00	4.40
1625	1718	5.925509	TGGTTAGTTAGATGAGTAATGGCC	58.074	41.667	0.00	0.00	0.00	5.36
1636	1729	1.490910	AGTAATGGCCCTGTCCTTAGC	59.509	52.381	0.00	0.00	0.00	3.09
1637	1730	0.468226	TAATGGCCCTGTCCTTAGCG	59.532	55.000	0.00	0.00	0.00	4.26
1638	1731	2.270874	AATGGCCCTGTCCTTAGCGG	62.271	60.000	0.00	0.00	0.00	5.52
1640	1733	4.096003	GCCCTGTCCTTAGCGGCA	62.096	66.667	1.45	0.00	39.50	5.69
1641	1734	2.911143	CCCTGTCCTTAGCGGCAT	59.089	61.111	1.45	0.00	0.00	4.40
1685	2451	7.726291	TGAAAGTAAAATTGGTTACCTCCATGA	59.274	33.333	2.07	0.00	37.33	3.07
1710	2476	7.687941	AAATACAACAGGTACAAATCTCAGG	57.312	36.000	0.00	0.00	34.07	3.86
1711	2477	3.412386	ACAACAGGTACAAATCTCAGGC	58.588	45.455	0.00	0.00	0.00	4.85
1752	2518	6.537301	TGAACACATCGATTCTATTACAACCC	59.463	38.462	0.00	0.00	0.00	4.11
1763	2529	2.396590	TTACAACCCATTCTCCGCTC	57.603	50.000	0.00	0.00	0.00	5.03
1772	2538	1.260033	CATTCTCCGCTCAATCGCTTC	59.740	52.381	0.00	0.00	0.00	3.86
1832	2599	9.899661	TGTGCTAAGGATATAGTTTTTGTGTAT	57.100	29.630	0.00	0.00	0.00	2.29
1843	2610	6.942532	AGTTTTTGTGTATGCTTCTCTTGA	57.057	33.333	0.00	0.00	0.00	3.02
1916	2684	6.094742	TCTGTTTGTTACATGTTTCTTCTGCA	59.905	34.615	2.30	0.00	35.85	4.41
1919	2687	5.673337	TGTTACATGTTTCTTCTGCAGAC	57.327	39.130	18.03	5.65	0.00	3.51
1973	2741	9.449719	TTTCCTCTGTTGTCTCTATTATTTTCC	57.550	33.333	0.00	0.00	0.00	3.13
1976	2744	7.265599	TCTGTTGTCTCTATTATTTTCCCCA	57.734	36.000	0.00	0.00	0.00	4.96
1977	2745	7.872138	TCTGTTGTCTCTATTATTTTCCCCAT	58.128	34.615	0.00	0.00	0.00	4.00
1983	2751	8.336235	TGTCTCTATTATTTTCCCCATTTGTCT	58.664	33.333	0.00	0.00	0.00	3.41
2029	2804	8.633075	TTTAGTTTTTCGTCGACTTTCTCTTA	57.367	30.769	14.70	0.00	0.00	2.10
2061	2837	9.378597	GTTTTGTCTCGGATTTTAGTACTTTTC	57.621	33.333	0.00	0.00	0.00	2.29
2062	2838	8.897872	TTTGTCTCGGATTTTAGTACTTTTCT	57.102	30.769	0.00	0.00	0.00	2.52
2063	2839	9.985730	TTTGTCTCGGATTTTAGTACTTTTCTA	57.014	29.630	0.00	0.00	0.00	2.10
2064	2840	9.985730	TTGTCTCGGATTTTAGTACTTTTCTAA	57.014	29.630	0.00	0.00	0.00	2.10
2065	2841	9.985730	TGTCTCGGATTTTAGTACTTTTCTAAA	57.014	29.630	0.00	0.00	36.15	1.85
2342	3127	9.593134	ACATGCAAACACTTTTTAGATTTACAA	57.407	25.926	0.00	0.00	0.00	2.41
2493	3280	7.514784	ACTTCATGAACATGTTTCAGAATGA	57.485	32.000	13.36	13.34	40.94	2.57
2494	3281	7.591165	ACTTCATGAACATGTTTCAGAATGAG	58.409	34.615	13.36	7.82	42.41	2.90
2495	3282	5.946298	TCATGAACATGTTTCAGAATGAGC	58.054	37.500	13.36	0.00	42.41	4.26
2496	3283	5.474189	TCATGAACATGTTTCAGAATGAGCA	59.526	36.000	13.36	2.14	42.41	4.26
2499	3286	7.358931	CATGAACATGTTTCAGAATGAGCAAAC	60.359	37.037	13.36	0.00	39.20	2.93

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
8	9	1.480954	GCTACTGCTAGGTGTGGCTAA	59.519	52.381	0.00	0.00	37.62	3.09
16	17	2.612221	GGAAACAACGCTACTGCTAGGT	60.612	50.000	0.00	0.00	36.97	3.08
21	22	0.517316	CTGGGAAACAACGCTACTGC	59.483	55.000	0.00	0.00	0.00	4.40
30	31	2.158871	AGTAGCGTTGTCTGGGAAACAA	60.159	45.455	0.00	0.00	34.37	2.83
32	33	1.798813	CAGTAGCGTTGTCTGGGAAAC	59.201	52.381	0.00	0.00	0.00	2.78
53	54	3.066900	AGCGTTACTACTGAGCACCATAG	59.933	47.826	0.00	0.00	0.00	2.23
71	72	4.683432	GCTTCTCCTGACAAGCGT	57.317	55.556	0.00	0.00	35.97	5.07
73	74	0.108615	TAGCGCTTCTCCTGACAAGC	60.109	55.000	18.68	0.00	41.46	4.01
79	80	3.628487	ACTTAGTAGTAGCGCTTCTCCTG	59.372	47.826	20.53	6.16	31.21	3.86
109	110	6.372937	GCTTTGAAAACTCCTCTACTGCTAAT	59.627	38.462	0.00	0.00	0.00	1.73
120	121	3.443099	GCACTTGCTTTGAAAACTCCT	57.557	42.857	0.00	0.00	38.21	3.69
146	147	7.927048	ACAAAGTGTTACTGCTAAGGTTTTAG	58.073	34.615	0.00	0.00	39.44	1.85
163	164	1.142965	GCGGCCCAAAACAAAGTGT	59.857	52.632	0.00	0.00	0.00	3.55
196	197	1.671054	AATGAGCCCACCGACGTTG	60.671	57.895	0.00	0.00	0.00	4.10
198	199	2.047274	CAATGAGCCCACCGACGT	60.047	61.111	0.00	0.00	0.00	4.34
200	201	2.438434	CCCAATGAGCCCACCGAC	60.438	66.667	0.00	0.00	0.00	4.79
206	207	2.043953	GTGGGACCCAATGAGCCC	60.044	66.667	16.98	0.00	41.08	5.19
212	213	3.136626	GCTACTGATAAGTGGGACCCAAT	59.863	47.826	16.98	12.43	34.18	3.16
316	317	1.885887	AGCGCTGGAAAATAACAAGCA	59.114	42.857	10.39	0.00	0.00	3.91
444	449	4.330074	AGTGTGACTTTTGAAGAACTCGTG	59.670	41.667	0.00	0.00	0.00	4.35
498	503	7.487822	ACTATGTCTATCTTCCACCCATATG	57.512	40.000	0.00	0.00	0.00	1.78
508	513	7.981789	TGGTTCACATCAACTATGTCTATCTTC	59.018	37.037	0.00	0.00	46.15	2.87
537	542	3.055963	TGCAAGAGGGGCATACATTTTTG	60.056	43.478	0.00	0.00	36.11	2.44
554	560	5.828747	AGCTAATTCTATGTGCATTGCAAG	58.171	37.500	13.94	7.70	41.47	4.01
555	561	5.840243	AGCTAATTCTATGTGCATTGCAA	57.160	34.783	13.94	0.00	41.47	4.08
603	609	1.413077	GCTACTCGGGATTAAGTGGCT	59.587	52.381	0.00	0.00	44.03	4.75
617	623	4.994852	TGGCCGTATATTGAATTGCTACTC	59.005	41.667	0.00	0.00	0.00	2.59
619	625	5.682943	TTGGCCGTATATTGAATTGCTAC	57.317	39.130	0.00	0.00	0.00	3.58
628	634	6.587990	TGATTTTGTTGTTTGGCCGTATATTG	59.412	34.615	0.00	0.00	0.00	1.90
629	635	6.692486	TGATTTTGTTGTTTGGCCGTATATT	58.308	32.000	0.00	0.00	0.00	1.28
637	643	6.601741	TCAATTCTGATTTTGTTGTTTGGC	57.398	33.333	2.15	0.00	0.00	4.52
674	682	7.072263	TGGGCATTAATTCCTTTTCTTTTGA	57.928	32.000	4.07	0.00	0.00	2.69
685	693	9.643693	CTATGTATTGAAATGGGCATTAATTCC	57.356	33.333	0.00	0.00	0.00	3.01
691	700	5.473066	GCCTATGTATTGAAATGGGCATT	57.527	39.130	5.29	0.00	46.57	3.56
714	723	9.447157	TGAAATTGAGTTCAAAACCAAAAATCT	57.553	25.926	0.00	0.00	39.55	2.40
747	756	4.272991	CAGAGAGCTGAGATTTGCAATACC	59.727	45.833	0.00	0.00	45.17	2.73
901	946	0.526739	GTTTGTGTGTTGGAACGGCC	60.527	55.000	0.00	0.00	37.10	6.13
953	1004	4.092091	GCTGGAAACTACTCGAGATGTTTG	59.908	45.833	29.64	21.24	33.49	2.93
954	1005	4.021016	AGCTGGAAACTACTCGAGATGTTT	60.021	41.667	27.02	27.02	35.64	2.83
1090	1151	1.899437	TAGCGGCCCTTCTTGAGGTG	61.899	60.000	0.00	0.00	44.71	4.00
1464	1545	1.302832	CTTCTTGGGCGACTTGGCT	60.303	57.895	0.00	0.00	44.11	4.75
1590	1683	5.227908	TCTAACTAACCAAAAGACTGCTCG	58.772	41.667	0.00	0.00	0.00	5.03
1620	1713	2.746375	CCGCTAAGGACAGGGCCAT	61.746	63.158	6.18	0.00	45.00	4.40
1624	1717	0.468226	TTATGCCGCTAAGGACAGGG	59.532	55.000	0.00	0.00	45.00	4.45
1625	1718	1.134521	TGTTATGCCGCTAAGGACAGG	60.135	52.381	0.00	0.00	45.00	4.00
1675	2441	6.134535	ACCTGTTGTATTTTCATGGAGGTA	57.865	37.500	0.00	0.00	0.00	3.08
1679	2445	7.825331	TTTGTACCTGTTGTATTTTCATGGA	57.175	32.000	0.00	0.00	0.00	3.41
1685	2451	7.309194	GCCTGAGATTTGTACCTGTTGTATTTT	60.309	37.037	0.00	0.00	0.00	1.82
1717	2483	3.750371	TCGATGTGTTCAATTCCAGGTT	58.250	40.909	0.00	0.00	0.00	3.50
1720	2486	5.808042	AGAATCGATGTGTTCAATTCCAG	57.192	39.130	0.00	0.00	0.00	3.86
1752	2518	1.260033	GAAGCGATTGAGCGGAGAATG	59.740	52.381	0.00	0.00	43.00	2.67
1763	2529	5.108385	ACTAGTTTTGTTGGAAGCGATTG	57.892	39.130	0.00	0.00	0.00	2.67
1772	2538	3.992427	GGACTCGGTACTAGTTTTGTTGG	59.008	47.826	0.00	0.00	33.31	3.77
1832	2599	4.521639	ACAGCATGAAAATCAAGAGAAGCA	59.478	37.500	0.00	0.00	39.69	3.91
1843	2610	4.582701	TCCACGAAAACAGCATGAAAAT	57.417	36.364	0.00	0.00	39.69	1.82
1905	2673	5.444663	AAATGGAAGTCTGCAGAAGAAAC	57.555	39.130	20.19	6.14	36.40	2.78
1912	2680	7.147312	TGAAACAATAAAATGGAAGTCTGCAG	58.853	34.615	7.63	7.63	0.00	4.41
1967	2735	5.606329	TCAAAGGAAGACAAATGGGGAAAAT	59.394	36.000	0.00	0.00	0.00	1.82
1968	2736	4.965532	TCAAAGGAAGACAAATGGGGAAAA	59.034	37.500	0.00	0.00	0.00	2.29
2005	2775	8.807667	ATAAGAGAAAGTCGACGAAAAACTAA	57.192	30.769	10.46	0.00	0.00	2.24
2006	2776	8.807667	AATAAGAGAAAGTCGACGAAAAACTA	57.192	30.769	10.46	0.00	0.00	2.24
2007	2777	7.710766	AATAAGAGAAAGTCGACGAAAAACT	57.289	32.000	10.46	5.29	0.00	2.66
2008	2778	8.763595	AAAATAAGAGAAAGTCGACGAAAAAC	57.236	30.769	10.46	1.98	0.00	2.43
2107	2888	4.621034	GTGCCATTTTAAGAATGGTTCACG	59.379	41.667	20.77	0.00	46.81	4.35
2108	2889	5.537188	TGTGCCATTTTAAGAATGGTTCAC	58.463	37.500	20.77	19.93	46.81	3.18
2115	2897	9.723601	AAAACATGTATGTGCCATTTTAAGAAT	57.276	25.926	0.00	0.00	41.61	2.40
2166	2950	4.036380	AGTGACGGGTCATTTGAAAAGTTC	59.964	41.667	4.63	0.00	42.18	3.01
2430	3217	8.996024	TCACATATTTTCGAGAAGTGTTCATA	57.004	30.769	6.73	0.00	0.00	2.15
2432	3219	7.225734	TGTTCACATATTTTCGAGAAGTGTTCA	59.774	33.333	6.73	5.26	0.00	3.18
2435	3222	6.706270	AGTGTTCACATATTTTCGAGAAGTGT	59.294	34.615	5.74	5.44	0.00	3.55
2441	3228	8.070171	ACAAGAAAGTGTTCACATATTTTCGAG	58.930	33.333	5.74	6.98	36.09	4.04
2443	3230	9.658475	TTACAAGAAAGTGTTCACATATTTTCG	57.342	29.630	5.74	0.00	36.09	3.46

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.