Multiple sequence alignment - TraesCS6B01G081100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G081100 chr6B 100.000 2525 0 0 1 2525 57459334 57456810 0.000000e+00 4663.0
1 TraesCS6B01G081100 chr6B 82.420 529 75 13 300 822 152197782 152198298 1.780000e-121 446.0
2 TraesCS6B01G081100 chr6B 80.414 531 85 16 300 823 47371993 47371475 1.100000e-103 387.0
3 TraesCS6B01G081100 chr6B 80.451 532 80 20 300 823 47305762 47305247 3.940000e-103 385.0
4 TraesCS6B01G081100 chr6D 88.518 1559 92 34 827 2366 30072794 30074284 0.000000e+00 1807.0
5 TraesCS6B01G081100 chr6D 82.251 231 31 4 1244 1465 436404795 436404566 9.220000e-45 191.0
6 TraesCS6B01G081100 chr2B 88.075 696 66 13 136 821 654585628 654584940 0.000000e+00 809.0
7 TraesCS6B01G081100 chr2B 83.333 636 77 18 865 1477 706699066 706699695 6.100000e-156 560.0
8 TraesCS6B01G081100 chr2B 83.150 635 73 15 859 1469 706567687 706568311 1.320000e-152 549.0
9 TraesCS6B01G081100 chr2B 79.753 405 52 20 1518 1901 706568429 706568824 1.490000e-67 267.0
10 TraesCS6B01G081100 chr2B 82.222 315 27 13 857 1144 770607753 770608065 6.980000e-61 244.0
11 TraesCS6B01G081100 chr2B 90.062 161 14 2 1 160 723426075 723426234 9.150000e-50 207.0
12 TraesCS6B01G081100 chr2B 78.146 302 39 13 1520 1818 706421702 706421979 1.550000e-37 167.0
13 TraesCS6B01G081100 chr2B 83.684 190 13 11 1631 1815 706699991 706700167 2.010000e-36 163.0
14 TraesCS6B01G081100 chr3D 93.612 407 21 5 136 538 159574835 159574430 9.990000e-169 603.0
15 TraesCS6B01G081100 chr3D 90.787 445 29 9 136 571 228165990 228165549 3.620000e-163 584.0
16 TraesCS6B01G081100 chr2D 91.051 447 27 12 136 572 135598597 135599040 2.160000e-165 592.0
17 TraesCS6B01G081100 chr2D 84.345 626 70 14 864 1469 585636326 585636943 2.800000e-164 588.0
18 TraesCS6B01G081100 chr2D 81.005 637 76 23 864 1469 585519754 585520376 4.920000e-127 464.0
19 TraesCS6B01G081100 chr2D 81.122 392 42 15 1518 1886 585520500 585520882 4.110000e-73 285.0
20 TraesCS6B01G081100 chr7D 91.031 446 26 11 136 571 581023357 581023798 7.780000e-165 590.0
21 TraesCS6B01G081100 chr7D 90.562 445 28 11 136 571 4659158 4658719 6.060000e-161 577.0
22 TraesCS6B01G081100 chr7D 88.184 457 42 9 265 712 108238646 108239099 3.700000e-148 534.0
23 TraesCS6B01G081100 chr7D 92.754 138 10 0 1 138 47905616 47905479 1.530000e-47 200.0
24 TraesCS6B01G081100 chr1D 91.011 445 28 11 136 571 285611412 285610971 7.780000e-165 590.0
25 TraesCS6B01G081100 chr1D 93.333 135 9 0 1 135 40863199 40863333 1.530000e-47 200.0
26 TraesCS6B01G081100 chr5B 90.766 444 29 10 136 571 492104989 492104550 1.300000e-162 582.0
27 TraesCS6B01G081100 chr5B 82.922 527 75 14 300 821 458688622 458689138 6.360000e-126 460.0
28 TraesCS6B01G081100 chr5B 93.382 136 9 0 1 136 375459093 375458958 4.260000e-48 202.0
29 TraesCS6B01G081100 chr3A 90.541 444 31 9 136 571 31562669 31563109 6.060000e-161 577.0
30 TraesCS6B01G081100 chr2A 81.692 650 76 20 865 1477 719685894 719686537 3.750000e-138 501.0
31 TraesCS6B01G081100 chr2A 84.593 344 32 10 864 1192 719565423 719565760 3.130000e-84 322.0
32 TraesCS6B01G081100 chr2A 80.247 405 50 17 1518 1901 719566623 719567018 6.880000e-71 278.0
33 TraesCS6B01G081100 chr2A 85.062 241 32 3 931 1171 719609748 719609984 2.510000e-60 243.0
34 TraesCS6B01G081100 chr2A 93.431 137 9 0 3 139 771463927 771464063 1.180000e-48 204.0
35 TraesCS6B01G081100 chr3B 82.617 535 76 12 300 828 704263885 704263362 8.230000e-125 457.0
36 TraesCS6B01G081100 chr3B 81.698 530 78 13 300 821 824237352 824237870 8.350000e-115 424.0
37 TraesCS6B01G081100 chr1B 81.767 532 72 20 300 822 44371578 44371063 3.000000e-114 422.0
38 TraesCS6B01G081100 chr1B 81.905 315 28 13 857 1144 62245141 62245453 3.250000e-59 239.0
39 TraesCS6B01G081100 chr1B 93.431 137 9 0 1 137 11133466 11133330 1.180000e-48 204.0
40 TraesCS6B01G081100 chr1B 93.431 137 9 0 1 137 463667201 463667337 1.180000e-48 204.0
41 TraesCS6B01G081100 chr4B 82.278 316 27 12 857 1145 649654421 649654108 1.940000e-61 246.0
42 TraesCS6B01G081100 chr7B 82.222 315 27 12 857 1144 616816988 616816676 6.980000e-61 244.0
43 TraesCS6B01G081100 chr7B 81.911 293 30 10 875 1144 686970425 686970717 2.530000e-55 226.0
44 TraesCS6B01G081100 chr5D 94.853 136 7 0 1 136 178526850 178526715 1.970000e-51 213.0
45 TraesCS6B01G081100 chr1A 94.074 135 8 0 1 135 311364060 311363926 3.290000e-49 206.0
46 TraesCS6B01G081100 chr6A 81.405 242 36 3 1233 1465 584508176 584507935 3.320000e-44 189.0
47 TraesCS6B01G081100 chr6A 80.335 239 38 3 1233 1462 584531243 584531005 3.340000e-39 172.0
48 TraesCS6B01G081100 chr7A 86.207 87 10 2 1950 2035 699805435 699805350 2.670000e-15 93.5
49 TraesCS6B01G081100 chr7A 92.683 41 3 0 1985 2025 608920965 608921005 2.710000e-05 60.2
50 TraesCS6B01G081100 chr4A 86.486 74 10 0 1951 2024 41851994 41852067 5.790000e-12 82.4
51 TraesCS6B01G081100 chr4A 87.755 49 6 0 1988 2036 562407843 562407891 9.760000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G081100 chr6B 57456810 57459334 2524 True 4663.0 4663 100.0000 1 2525 1 chr6B.!!$R3 2524
1 TraesCS6B01G081100 chr6B 152197782 152198298 516 False 446.0 446 82.4200 300 822 1 chr6B.!!$F1 522
2 TraesCS6B01G081100 chr6B 47371475 47371993 518 True 387.0 387 80.4140 300 823 1 chr6B.!!$R2 523
3 TraesCS6B01G081100 chr6B 47305247 47305762 515 True 385.0 385 80.4510 300 823 1 chr6B.!!$R1 523
4 TraesCS6B01G081100 chr6D 30072794 30074284 1490 False 1807.0 1807 88.5180 827 2366 1 chr6D.!!$F1 1539
5 TraesCS6B01G081100 chr2B 654584940 654585628 688 True 809.0 809 88.0750 136 821 1 chr2B.!!$R1 685
6 TraesCS6B01G081100 chr2B 706567687 706568824 1137 False 408.0 549 81.4515 859 1901 2 chr2B.!!$F4 1042
7 TraesCS6B01G081100 chr2B 706699066 706700167 1101 False 361.5 560 83.5085 865 1815 2 chr2B.!!$F5 950
8 TraesCS6B01G081100 chr2D 585636326 585636943 617 False 588.0 588 84.3450 864 1469 1 chr2D.!!$F2 605
9 TraesCS6B01G081100 chr2D 585519754 585520882 1128 False 374.5 464 81.0635 864 1886 2 chr2D.!!$F3 1022
10 TraesCS6B01G081100 chr5B 458688622 458689138 516 False 460.0 460 82.9220 300 821 1 chr5B.!!$F1 521
11 TraesCS6B01G081100 chr2A 719685894 719686537 643 False 501.0 501 81.6920 865 1477 1 chr2A.!!$F2 612
12 TraesCS6B01G081100 chr2A 719565423 719567018 1595 False 300.0 322 82.4200 864 1901 2 chr2A.!!$F4 1037
13 TraesCS6B01G081100 chr3B 704263362 704263885 523 True 457.0 457 82.6170 300 828 1 chr3B.!!$R1 528
14 TraesCS6B01G081100 chr3B 824237352 824237870 518 False 424.0 424 81.6980 300 821 1 chr3B.!!$F1 521
15 TraesCS6B01G081100 chr1B 44371063 44371578 515 True 422.0 422 81.7670 300 822 1 chr1B.!!$R2 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 917 0.249911 GGCATTATCGGCGTCCTTCT 60.25 55.0 6.85 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2387 3208 0.097849 GCTGCTTTTTCCGAGCTAGC 59.902 55.0 6.62 6.62 40.75 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.394712 GGAGGCAGGTGACGGGTG 62.395 72.222 0.00 0.00 0.00 4.61
18 19 3.626924 GAGGCAGGTGACGGGTGT 61.627 66.667 0.00 0.00 0.00 4.16
19 20 3.168528 AGGCAGGTGACGGGTGTT 61.169 61.111 0.00 0.00 0.00 3.32
20 21 2.978010 GGCAGGTGACGGGTGTTG 60.978 66.667 0.00 0.00 0.00 3.33
21 22 2.978010 GCAGGTGACGGGTGTTGG 60.978 66.667 0.00 0.00 0.00 3.77
22 23 2.508928 CAGGTGACGGGTGTTGGT 59.491 61.111 0.00 0.00 0.00 3.67
23 24 1.891919 CAGGTGACGGGTGTTGGTG 60.892 63.158 0.00 0.00 0.00 4.17
24 25 2.191109 GGTGACGGGTGTTGGTGT 59.809 61.111 0.00 0.00 0.00 4.16
25 26 1.890510 GGTGACGGGTGTTGGTGTC 60.891 63.158 0.00 0.00 0.00 3.67
26 27 1.153329 GTGACGGGTGTTGGTGTCA 60.153 57.895 0.00 0.00 38.91 3.58
27 28 0.745128 GTGACGGGTGTTGGTGTCAA 60.745 55.000 0.00 0.00 42.43 3.18
28 29 0.462937 TGACGGGTGTTGGTGTCAAG 60.463 55.000 0.00 0.00 38.32 3.02
29 30 1.782028 GACGGGTGTTGGTGTCAAGC 61.782 60.000 0.00 0.00 32.92 4.01
30 31 1.525995 CGGGTGTTGGTGTCAAGCT 60.526 57.895 0.00 0.00 32.92 3.74
31 32 1.507141 CGGGTGTTGGTGTCAAGCTC 61.507 60.000 0.00 0.00 32.92 4.09
32 33 0.465460 GGGTGTTGGTGTCAAGCTCA 60.465 55.000 0.00 0.00 32.92 4.26
33 34 0.947244 GGTGTTGGTGTCAAGCTCAG 59.053 55.000 0.00 0.00 32.92 3.35
34 35 1.475034 GGTGTTGGTGTCAAGCTCAGA 60.475 52.381 0.00 0.00 32.92 3.27
35 36 1.869767 GTGTTGGTGTCAAGCTCAGAG 59.130 52.381 0.00 0.00 32.92 3.35
36 37 1.762370 TGTTGGTGTCAAGCTCAGAGA 59.238 47.619 0.00 0.00 32.92 3.10
37 38 2.369860 TGTTGGTGTCAAGCTCAGAGAT 59.630 45.455 0.00 0.00 32.92 2.75
38 39 2.740981 GTTGGTGTCAAGCTCAGAGATG 59.259 50.000 0.00 0.00 32.92 2.90
39 40 1.973515 TGGTGTCAAGCTCAGAGATGT 59.026 47.619 0.00 0.00 0.00 3.06
40 41 2.369860 TGGTGTCAAGCTCAGAGATGTT 59.630 45.455 0.00 0.00 0.00 2.71
41 42 2.740981 GGTGTCAAGCTCAGAGATGTTG 59.259 50.000 0.00 1.58 0.00 3.33
42 43 3.397482 GTGTCAAGCTCAGAGATGTTGT 58.603 45.455 0.00 0.00 0.00 3.32
43 44 4.560128 GTGTCAAGCTCAGAGATGTTGTA 58.440 43.478 0.00 0.00 0.00 2.41
44 45 4.387256 GTGTCAAGCTCAGAGATGTTGTAC 59.613 45.833 0.00 2.81 0.00 2.90
45 46 4.281941 TGTCAAGCTCAGAGATGTTGTACT 59.718 41.667 0.00 0.00 0.00 2.73
46 47 5.476945 TGTCAAGCTCAGAGATGTTGTACTA 59.523 40.000 0.00 0.00 0.00 1.82
47 48 6.153510 TGTCAAGCTCAGAGATGTTGTACTAT 59.846 38.462 0.00 0.00 0.00 2.12
48 49 6.695278 GTCAAGCTCAGAGATGTTGTACTATC 59.305 42.308 0.00 0.00 0.00 2.08
49 50 6.605194 TCAAGCTCAGAGATGTTGTACTATCT 59.395 38.462 0.00 7.32 36.41 1.98
50 51 7.123397 TCAAGCTCAGAGATGTTGTACTATCTT 59.877 37.037 0.00 0.00 33.97 2.40
51 52 7.416964 AGCTCAGAGATGTTGTACTATCTTT 57.583 36.000 0.00 2.49 33.97 2.52
52 53 7.846066 AGCTCAGAGATGTTGTACTATCTTTT 58.154 34.615 0.00 1.08 33.97 2.27
53 54 7.978975 AGCTCAGAGATGTTGTACTATCTTTTC 59.021 37.037 0.00 0.07 33.97 2.29
54 55 7.761704 GCTCAGAGATGTTGTACTATCTTTTCA 59.238 37.037 0.00 0.00 33.97 2.69
55 56 9.299963 CTCAGAGATGTTGTACTATCTTTTCAG 57.700 37.037 0.00 1.26 33.97 3.02
56 57 8.807118 TCAGAGATGTTGTACTATCTTTTCAGT 58.193 33.333 8.54 0.00 33.97 3.41
57 58 9.429359 CAGAGATGTTGTACTATCTTTTCAGTT 57.571 33.333 8.54 0.00 33.97 3.16
63 64 9.391006 TGTTGTACTATCTTTTCAGTTTTGTCT 57.609 29.630 0.00 0.00 0.00 3.41
66 67 9.391006 TGTACTATCTTTTCAGTTTTGTCTTGT 57.609 29.630 0.00 0.00 0.00 3.16
67 68 9.865484 GTACTATCTTTTCAGTTTTGTCTTGTC 57.135 33.333 0.00 0.00 0.00 3.18
68 69 8.506168 ACTATCTTTTCAGTTTTGTCTTGTCA 57.494 30.769 0.00 0.00 0.00 3.58
69 70 8.616076 ACTATCTTTTCAGTTTTGTCTTGTCAG 58.384 33.333 0.00 0.00 0.00 3.51
70 71 6.817765 TCTTTTCAGTTTTGTCTTGTCAGT 57.182 33.333 0.00 0.00 0.00 3.41
71 72 6.842163 TCTTTTCAGTTTTGTCTTGTCAGTC 58.158 36.000 0.00 0.00 0.00 3.51
72 73 6.655003 TCTTTTCAGTTTTGTCTTGTCAGTCT 59.345 34.615 0.00 0.00 0.00 3.24
73 74 6.817765 TTTCAGTTTTGTCTTGTCAGTCTT 57.182 33.333 0.00 0.00 0.00 3.01
74 75 6.817765 TTCAGTTTTGTCTTGTCAGTCTTT 57.182 33.333 0.00 0.00 0.00 2.52
75 76 7.915293 TTCAGTTTTGTCTTGTCAGTCTTTA 57.085 32.000 0.00 0.00 0.00 1.85
76 77 8.506168 TTCAGTTTTGTCTTGTCAGTCTTTAT 57.494 30.769 0.00 0.00 0.00 1.40
77 78 7.919690 TCAGTTTTGTCTTGTCAGTCTTTATG 58.080 34.615 0.00 0.00 0.00 1.90
78 79 7.552687 TCAGTTTTGTCTTGTCAGTCTTTATGT 59.447 33.333 0.00 0.00 0.00 2.29
79 80 7.641411 CAGTTTTGTCTTGTCAGTCTTTATGTG 59.359 37.037 0.00 0.00 0.00 3.21
80 81 7.552687 AGTTTTGTCTTGTCAGTCTTTATGTGA 59.447 33.333 0.00 0.00 0.00 3.58
81 82 6.844696 TTGTCTTGTCAGTCTTTATGTGAC 57.155 37.500 0.00 0.00 40.89 3.67
82 83 6.161855 TGTCTTGTCAGTCTTTATGTGACT 57.838 37.500 3.59 0.00 44.62 3.41
83 84 6.582636 TGTCTTGTCAGTCTTTATGTGACTT 58.417 36.000 3.59 0.00 42.21 3.01
84 85 6.479990 TGTCTTGTCAGTCTTTATGTGACTTG 59.520 38.462 3.59 0.00 42.21 3.16
85 86 6.480320 GTCTTGTCAGTCTTTATGTGACTTGT 59.520 38.462 3.59 0.00 42.21 3.16
86 87 7.652105 GTCTTGTCAGTCTTTATGTGACTTGTA 59.348 37.037 3.59 0.00 42.21 2.41
87 88 8.367911 TCTTGTCAGTCTTTATGTGACTTGTAT 58.632 33.333 3.59 0.00 42.21 2.29
88 89 8.902540 TTGTCAGTCTTTATGTGACTTGTATT 57.097 30.769 3.59 0.00 42.21 1.89
89 90 8.902540 TGTCAGTCTTTATGTGACTTGTATTT 57.097 30.769 3.59 0.00 42.21 1.40
90 91 9.337396 TGTCAGTCTTTATGTGACTTGTATTTT 57.663 29.630 3.59 0.00 42.21 1.82
117 118 9.770097 ATTCTTTATGATATGAATGAGACACGT 57.230 29.630 0.00 0.00 0.00 4.49
127 128 6.769608 TGAATGAGACACGTATTATCATGC 57.230 37.500 7.11 6.22 31.24 4.06
128 129 6.279882 TGAATGAGACACGTATTATCATGCA 58.720 36.000 9.55 9.55 34.30 3.96
129 130 6.760770 TGAATGAGACACGTATTATCATGCAA 59.239 34.615 10.74 0.00 33.87 4.08
130 131 7.279758 TGAATGAGACACGTATTATCATGCAAA 59.720 33.333 10.74 0.00 33.87 3.68
131 132 6.976636 TGAGACACGTATTATCATGCAAAA 57.023 33.333 0.00 0.00 0.00 2.44
132 133 7.371126 TGAGACACGTATTATCATGCAAAAA 57.629 32.000 0.00 0.00 0.00 1.94
191 194 5.940192 TGTCTTTTTGTAGTGCTACATGG 57.060 39.130 12.18 4.65 44.54 3.66
198 201 2.038426 TGTAGTGCTACATGGCAACTGT 59.962 45.455 7.87 0.00 44.18 3.55
204 207 3.767131 TGCTACATGGCAACTGTCTAGTA 59.233 43.478 0.00 0.00 39.43 1.82
216 219 7.868415 GGCAACTGTCTAGTATTTAGTAGATGG 59.132 40.741 5.64 4.99 39.62 3.51
236 239 3.844211 TGGCAACTCCTAAAGATACCACT 59.156 43.478 0.00 0.00 35.26 4.00
238 241 3.623510 GCAACTCCTAAAGATACCACTGC 59.376 47.826 0.00 0.00 0.00 4.40
267 271 2.352032 CGTCTCCTCTCCCACACCC 61.352 68.421 0.00 0.00 0.00 4.61
272 276 0.401395 TCCTCTCCCACACCCAAAGT 60.401 55.000 0.00 0.00 0.00 2.66
277 281 0.626382 TCCCACACCCAAAGTTGTCA 59.374 50.000 0.00 0.00 0.00 3.58
282 286 2.491693 CACACCCAAAGTTGTCAGTTGT 59.508 45.455 0.00 0.00 0.00 3.32
364 371 6.527423 ACTCTTTCTTTACCCGAACATGTTA 58.473 36.000 11.95 0.00 0.00 2.41
461 472 4.704540 TCATGGCAATTGTAGTAAACCAGG 59.295 41.667 7.40 5.88 0.00 4.45
463 474 2.823154 GGCAATTGTAGTAAACCAGGCA 59.177 45.455 7.40 0.00 0.00 4.75
490 501 2.407268 CAACAGCTGCAGTTGTCCA 58.593 52.632 32.48 0.00 41.00 4.02
491 502 0.740149 CAACAGCTGCAGTTGTCCAA 59.260 50.000 32.48 0.00 41.00 3.53
492 503 1.134753 CAACAGCTGCAGTTGTCCAAA 59.865 47.619 32.48 0.00 41.00 3.28
493 504 1.473258 ACAGCTGCAGTTGTCCAAAA 58.527 45.000 28.17 0.00 34.29 2.44
494 505 1.824230 ACAGCTGCAGTTGTCCAAAAA 59.176 42.857 28.17 0.00 34.29 1.94
495 506 2.431782 ACAGCTGCAGTTGTCCAAAAAT 59.568 40.909 28.17 5.34 34.29 1.82
496 507 2.798283 CAGCTGCAGTTGTCCAAAAATG 59.202 45.455 21.28 0.00 0.00 2.32
497 508 2.137523 GCTGCAGTTGTCCAAAAATGG 58.862 47.619 16.64 0.00 0.00 3.16
498 509 2.137523 CTGCAGTTGTCCAAAAATGGC 58.862 47.619 5.25 0.00 0.00 4.40
499 510 1.483827 TGCAGTTGTCCAAAAATGGCA 59.516 42.857 0.00 0.00 0.00 4.92
500 511 2.104451 TGCAGTTGTCCAAAAATGGCAT 59.896 40.909 0.00 0.00 0.00 4.40
533 592 2.616256 CCTGAGATGGCAACTGCAGTTA 60.616 50.000 30.67 16.98 44.36 2.24
660 747 3.377172 GTGTGGGCGTTATCTATTTTGCT 59.623 43.478 0.00 0.00 0.00 3.91
662 749 2.869801 TGGGCGTTATCTATTTTGCTCG 59.130 45.455 0.00 0.00 0.00 5.03
663 750 2.870411 GGGCGTTATCTATTTTGCTCGT 59.130 45.455 0.00 0.00 0.00 4.18
672 759 2.667473 ATTTTGCTCGTACGTAGGCT 57.333 45.000 16.05 0.00 0.00 4.58
686 775 2.409984 TAGGCTTGTGGGAGGGACCA 62.410 60.000 0.00 0.00 41.20 4.02
725 816 4.343526 ACATGTGGGCATTACTTGTTTTGA 59.656 37.500 0.00 0.00 34.09 2.69
732 823 4.440802 GGCATTACTTGTTTTGACCACACA 60.441 41.667 0.00 0.00 0.00 3.72
735 826 7.090173 GCATTACTTGTTTTGACCACACATAT 58.910 34.615 0.00 0.00 0.00 1.78
782 875 1.066908 CAACAAAACGTGTGGCCAGAT 59.933 47.619 5.11 0.00 40.60 2.90
801 894 2.536761 TCTCTTTAACACCCACACGG 57.463 50.000 0.00 0.00 37.81 4.94
823 916 1.228657 GGGCATTATCGGCGTCCTTC 61.229 60.000 6.85 0.00 0.00 3.46
824 917 0.249911 GGCATTATCGGCGTCCTTCT 60.250 55.000 6.85 0.00 0.00 2.85
825 918 1.583054 GCATTATCGGCGTCCTTCTT 58.417 50.000 6.85 0.00 0.00 2.52
837 930 3.064134 GCGTCCTTCTTTAAATCTGGCTC 59.936 47.826 0.00 0.00 0.00 4.70
913 1006 2.004017 CTCCACGCACGCCTATAAAAA 58.996 47.619 0.00 0.00 0.00 1.94
914 1007 2.004017 TCCACGCACGCCTATAAAAAG 58.996 47.619 0.00 0.00 0.00 2.27
963 1089 3.771479 AGCACAACATCCTCTCACAGATA 59.229 43.478 0.00 0.00 0.00 1.98
964 1090 3.868077 GCACAACATCCTCTCACAGATAC 59.132 47.826 0.00 0.00 0.00 2.24
965 1091 4.621510 GCACAACATCCTCTCACAGATACA 60.622 45.833 0.00 0.00 0.00 2.29
1024 1159 0.988063 AACCAAGAGCCTCCTTCTCC 59.012 55.000 0.00 0.00 0.00 3.71
1026 1161 0.911525 CCAAGAGCCTCCTTCTCCCA 60.912 60.000 0.00 0.00 0.00 4.37
1144 1282 1.079405 GGGAACTCCATCAACGCGA 60.079 57.895 15.93 0.00 37.91 5.87
1176 1314 0.442699 CGTTCCGGAGTAAGCAAAGC 59.557 55.000 3.34 0.00 0.00 3.51
1177 1315 1.519408 GTTCCGGAGTAAGCAAAGCA 58.481 50.000 3.34 0.00 0.00 3.91
1220 1843 3.462982 GATGCCATATACACAACCGTCA 58.537 45.455 0.00 0.00 0.00 4.35
1255 1878 1.891811 CTTCTCTGCTCTGGACAGACA 59.108 52.381 0.00 1.88 39.21 3.41
1259 1882 1.810606 CTGCTCTGGACAGACACCGT 61.811 60.000 0.00 0.00 37.32 4.83
1363 1986 4.519437 CCTCATCGCTGCTCGCCA 62.519 66.667 0.00 0.00 38.27 5.69
1364 1987 2.279985 CTCATCGCTGCTCGCCAT 60.280 61.111 0.00 0.00 38.27 4.40
1365 1988 2.586914 TCATCGCTGCTCGCCATG 60.587 61.111 0.00 1.08 38.41 3.66
1437 2069 4.408821 GCCAGCATCACCGGGACA 62.409 66.667 6.32 0.00 0.00 4.02
1493 2131 1.095807 GGCCTCCCTATTGACAACGC 61.096 60.000 0.00 0.00 0.00 4.84
1578 2302 7.047460 ACGATATGACGGACCTAAATAAACT 57.953 36.000 0.00 0.00 37.61 2.66
1585 2309 4.250464 CGGACCTAAATAAACTCTGTGCA 58.750 43.478 0.00 0.00 0.00 4.57
1610 2334 4.629204 GCCAACCTACCAATGTACCCAATA 60.629 45.833 0.00 0.00 0.00 1.90
1611 2335 5.511363 CCAACCTACCAATGTACCCAATAA 58.489 41.667 0.00 0.00 0.00 1.40
1612 2336 6.133356 CCAACCTACCAATGTACCCAATAAT 58.867 40.000 0.00 0.00 0.00 1.28
1633 2421 6.663944 AATTGTCAACTATCCTCGCTTTAC 57.336 37.500 0.00 0.00 0.00 2.01
1704 2494 7.307751 GCACATAAGTAAAGCATATCGCCTAAA 60.308 37.037 0.00 0.00 44.04 1.85
1743 2535 1.256652 CGTGATCGATGTTCGTTCGT 58.743 50.000 0.54 0.00 40.40 3.85
1761 2553 5.851177 CGTTCGTTGTGAAAAATGAAGCTAT 59.149 36.000 0.00 0.00 38.60 2.97
1763 2555 5.153513 TCGTTGTGAAAAATGAAGCTATGC 58.846 37.500 0.00 0.00 0.00 3.14
1827 2626 7.526608 ACATTGTGATTGGTTACTGTTTATCG 58.473 34.615 0.00 0.00 0.00 2.92
1886 2698 6.976349 TCTAGCACCATAACTTGTGTATTACG 59.024 38.462 0.00 0.00 34.94 3.18
1888 2700 6.346096 AGCACCATAACTTGTGTATTACGAT 58.654 36.000 0.00 0.00 34.94 3.73
1897 2709 6.204359 ACTTGTGTATTACGATAGGCTAACG 58.796 40.000 20.69 20.69 43.77 3.18
1906 2718 2.466846 GATAGGCTAACGCGCACTTTA 58.533 47.619 5.73 0.16 36.88 1.85
1912 2724 2.596807 GCTAACGCGCACTTTACTATGC 60.597 50.000 5.73 0.00 38.52 3.14
1915 2727 0.999406 CGCGCACTTTACTATGCTGT 59.001 50.000 8.75 0.00 39.79 4.40
2020 2834 9.350357 TGAACTGTCAAAACGTCTTATATCTAC 57.650 33.333 0.00 0.00 0.00 2.59
2025 2839 7.485913 TGTCAAAACGTCTTATATCTACGAACC 59.514 37.037 10.34 0.00 39.80 3.62
2033 2847 6.648725 GTCTTATATCTACGAACCGAGGTAGT 59.351 42.308 0.00 1.99 37.84 2.73
2034 2848 7.815068 GTCTTATATCTACGAACCGAGGTAGTA 59.185 40.741 0.00 3.09 37.84 1.82
2099 2913 9.573133 CTAGGTTTGGCTTGAGTTTTAATTATG 57.427 33.333 0.00 0.00 0.00 1.90
2102 2916 9.699703 GGTTTGGCTTGAGTTTTAATTATGTTA 57.300 29.630 0.00 0.00 0.00 2.41
2119 2935 5.818136 ATGTTATGATGGTGTTTTCTCCG 57.182 39.130 0.00 0.00 36.36 4.63
2137 2953 4.936411 TCTCCGTATAGCATACTAGACTGC 59.064 45.833 11.67 11.67 38.26 4.40
2143 2959 3.533606 AGCATACTAGACTGCTGTTGG 57.466 47.619 18.60 0.00 46.55 3.77
2147 2963 4.202202 GCATACTAGACTGCTGTTGGAGAT 60.202 45.833 12.15 0.00 35.49 2.75
2149 2965 6.676950 CATACTAGACTGCTGTTGGAGATAG 58.323 44.000 0.00 0.00 35.49 2.08
2164 2980 6.647334 TGGAGATAGTATTTGCTCTGAGAG 57.353 41.667 9.28 4.80 0.00 3.20
2173 2989 1.261480 TGCTCTGAGAGGGAAGTGAC 58.739 55.000 12.01 0.00 0.00 3.67
2176 2992 2.353605 GCTCTGAGAGGGAAGTGACTTG 60.354 54.545 12.01 0.00 0.00 3.16
2185 3001 1.268539 GGAAGTGACTTGTTTGGTGCG 60.269 52.381 0.90 0.00 0.00 5.34
2192 3008 3.818210 TGACTTGTTTGGTGCGTGATTAT 59.182 39.130 0.00 0.00 0.00 1.28
2194 3010 3.818210 ACTTGTTTGGTGCGTGATTATGA 59.182 39.130 0.00 0.00 0.00 2.15
2218 3034 4.919168 TGTCTTTACACGTTTCAGTATCGG 59.081 41.667 0.00 0.00 0.00 4.18
2227 3043 3.121279 CGTTTCAGTATCGGTGTCAGTTG 59.879 47.826 0.00 0.00 0.00 3.16
2232 3048 4.045104 CAGTATCGGTGTCAGTTGATAGC 58.955 47.826 0.00 0.00 0.00 2.97
2241 3057 2.093869 GTCAGTTGATAGCGGTTGGGTA 60.094 50.000 0.00 0.00 0.00 3.69
2248 3064 1.481901 TAGCGGTTGGGTAAGCCACA 61.482 55.000 0.00 0.00 36.17 4.17
2277 3093 2.682856 TCCTATTCCACGCTGAAATTGC 59.317 45.455 0.00 0.00 0.00 3.56
2296 3112 1.599542 GCGGAATTCCTGCTATGACAC 59.400 52.381 24.75 3.54 34.38 3.67
2299 3115 3.430790 CGGAATTCCTGCTATGACACTCA 60.431 47.826 22.05 0.00 0.00 3.41
2302 3118 3.599730 TTCCTGCTATGACACTCACAG 57.400 47.619 0.00 0.00 0.00 3.66
2304 3120 1.552337 CCTGCTATGACACTCACAGGT 59.448 52.381 0.00 0.00 34.97 4.00
2313 3134 3.579302 CTCACAGGTTGGCCCCCA 61.579 66.667 10.93 0.00 34.57 4.96
2317 3138 2.604382 CAGGTTGGCCCCCAAAGG 60.604 66.667 10.93 0.00 45.73 3.11
2327 3148 2.335712 CCCCAAAGGTCTTGCTCGC 61.336 63.158 0.00 0.00 0.00 5.03
2347 3168 4.775977 AGCTCGGCTCCCTGCTCT 62.776 66.667 0.00 0.00 42.39 4.09
2351 3172 4.527583 CGGCTCCCTGCTCTGCTC 62.528 72.222 0.00 0.00 42.39 4.26
2366 3187 4.330074 GCTCTGCTCGCTTGTTTAGATTTA 59.670 41.667 0.00 0.00 0.00 1.40
2367 3188 5.007136 GCTCTGCTCGCTTGTTTAGATTTAT 59.993 40.000 0.00 0.00 0.00 1.40
2368 3189 6.457528 GCTCTGCTCGCTTGTTTAGATTTATT 60.458 38.462 0.00 0.00 0.00 1.40
2369 3190 7.377766 TCTGCTCGCTTGTTTAGATTTATTT 57.622 32.000 0.00 0.00 0.00 1.40
2370 3191 7.816640 TCTGCTCGCTTGTTTAGATTTATTTT 58.183 30.769 0.00 0.00 0.00 1.82
2371 3192 8.296713 TCTGCTCGCTTGTTTAGATTTATTTTT 58.703 29.630 0.00 0.00 0.00 1.94
2385 3206 2.340809 TTTTTCCGCTCGCTCCGA 59.659 55.556 0.00 0.00 0.00 4.55
2386 3207 1.079405 TTTTTCCGCTCGCTCCGAT 60.079 52.632 0.00 0.00 34.61 4.18
2387 3208 1.358725 TTTTTCCGCTCGCTCCGATG 61.359 55.000 0.00 0.00 34.61 3.84
2388 3209 4.873129 TTCCGCTCGCTCCGATGC 62.873 66.667 0.00 0.00 34.61 3.91
2390 3211 3.966104 CCGCTCGCTCCGATGCTA 61.966 66.667 0.00 0.00 34.61 3.49
2391 3212 2.428236 CGCTCGCTCCGATGCTAG 60.428 66.667 0.00 0.00 34.61 3.42
2392 3213 2.732843 GCTCGCTCCGATGCTAGC 60.733 66.667 8.10 8.10 42.78 3.42
2393 3214 3.038280 CTCGCTCCGATGCTAGCT 58.962 61.111 17.23 0.83 36.56 3.32
2394 3215 1.081509 CTCGCTCCGATGCTAGCTC 60.082 63.158 17.23 9.92 36.56 4.09
2395 3216 2.428236 CGCTCCGATGCTAGCTCG 60.428 66.667 21.98 21.98 36.56 5.03
2403 3224 1.004504 CGATGCTAGCTCGGAAAAAGC 60.005 52.381 21.48 0.00 40.14 3.51
2404 3225 2.009774 GATGCTAGCTCGGAAAAAGCA 58.990 47.619 17.23 7.50 46.30 3.91
2405 3226 1.442769 TGCTAGCTCGGAAAAAGCAG 58.557 50.000 17.23 0.00 42.35 4.24
2406 3227 0.097849 GCTAGCTCGGAAAAAGCAGC 59.902 55.000 7.70 1.69 42.35 5.25
2407 3228 1.731720 CTAGCTCGGAAAAAGCAGCT 58.268 50.000 0.00 0.00 44.50 4.24
2408 3229 2.893637 CTAGCTCGGAAAAAGCAGCTA 58.106 47.619 0.00 0.00 42.34 3.32
2409 3230 2.185004 AGCTCGGAAAAAGCAGCTAA 57.815 45.000 0.00 0.00 40.52 3.09
2410 3231 1.807142 AGCTCGGAAAAAGCAGCTAAC 59.193 47.619 0.00 0.00 40.52 2.34
2411 3232 1.464189 GCTCGGAAAAAGCAGCTAACG 60.464 52.381 0.00 0.00 39.61 3.18
2412 3233 1.798813 CTCGGAAAAAGCAGCTAACGT 59.201 47.619 0.00 0.00 0.00 3.99
2413 3234 2.215196 TCGGAAAAAGCAGCTAACGTT 58.785 42.857 5.88 5.88 0.00 3.99
2414 3235 2.614983 TCGGAAAAAGCAGCTAACGTTT 59.385 40.909 5.91 0.00 0.00 3.60
2415 3236 3.065648 TCGGAAAAAGCAGCTAACGTTTT 59.934 39.130 5.91 10.80 32.57 2.43
2416 3237 3.794564 CGGAAAAAGCAGCTAACGTTTTT 59.205 39.130 5.91 0.00 35.36 1.94
2417 3238 4.971220 CGGAAAAAGCAGCTAACGTTTTTA 59.029 37.500 5.91 0.00 33.37 1.52
2418 3239 5.627780 CGGAAAAAGCAGCTAACGTTTTTAT 59.372 36.000 5.91 0.00 33.37 1.40
2419 3240 6.143278 CGGAAAAAGCAGCTAACGTTTTTATT 59.857 34.615 5.91 0.00 33.37 1.40
2420 3241 7.306341 CGGAAAAAGCAGCTAACGTTTTTATTT 60.306 33.333 5.91 0.00 33.37 1.40
2421 3242 7.792048 GGAAAAAGCAGCTAACGTTTTTATTTG 59.208 33.333 5.91 0.00 33.37 2.32
2422 3243 7.995463 AAAAGCAGCTAACGTTTTTATTTGA 57.005 28.000 5.91 0.00 0.00 2.69
2423 3244 7.995463 AAAGCAGCTAACGTTTTTATTTGAA 57.005 28.000 5.91 0.00 0.00 2.69
2424 3245 7.995463 AAGCAGCTAACGTTTTTATTTGAAA 57.005 28.000 5.91 0.00 0.00 2.69
2425 3246 7.995463 AGCAGCTAACGTTTTTATTTGAAAA 57.005 28.000 5.91 0.00 0.00 2.29
2426 3247 8.413899 AGCAGCTAACGTTTTTATTTGAAAAA 57.586 26.923 5.91 0.00 30.95 1.94
2453 3274 9.643693 ACATTAAATGAAAAGATGTTCATGGAC 57.356 29.630 0.00 0.00 45.42 4.02
2454 3275 9.642327 CATTAAATGAAAAGATGTTCATGGACA 57.358 29.630 9.85 9.85 45.42 4.02
2458 3279 9.865321 AAATGAAAAGATGTTCATGGACATTAG 57.135 29.630 20.74 0.00 45.42 1.73
2459 3280 8.812513 ATGAAAAGATGTTCATGGACATTAGA 57.187 30.769 20.74 3.36 44.65 2.10
2460 3281 8.634335 TGAAAAGATGTTCATGGACATTAGAA 57.366 30.769 20.74 3.02 40.21 2.10
2461 3282 9.076781 TGAAAAGATGTTCATGGACATTAGAAA 57.923 29.630 20.74 3.54 40.21 2.52
2463 3284 9.865321 AAAAGATGTTCATGGACATTAGAAATG 57.135 29.630 20.74 0.00 40.21 2.32
2464 3285 8.585471 AAGATGTTCATGGACATTAGAAATGT 57.415 30.769 20.74 5.01 40.21 2.71
2465 3286 8.585471 AGATGTTCATGGACATTAGAAATGTT 57.415 30.769 20.74 0.00 40.21 2.71
2466 3287 8.464404 AGATGTTCATGGACATTAGAAATGTTG 58.536 33.333 20.74 2.50 40.21 3.33
2467 3288 7.523293 TGTTCATGGACATTAGAAATGTTGT 57.477 32.000 1.52 0.00 31.52 3.32
2468 3289 7.369607 TGTTCATGGACATTAGAAATGTTGTG 58.630 34.615 1.52 6.67 31.52 3.33
2469 3290 6.513806 TCATGGACATTAGAAATGTTGTGG 57.486 37.500 6.72 0.00 31.52 4.17
2470 3291 6.244654 TCATGGACATTAGAAATGTTGTGGA 58.755 36.000 6.72 1.79 31.52 4.02
2471 3292 6.891361 TCATGGACATTAGAAATGTTGTGGAT 59.109 34.615 6.72 0.00 31.52 3.41
2472 3293 7.396907 TCATGGACATTAGAAATGTTGTGGATT 59.603 33.333 6.72 0.00 31.52 3.01
2473 3294 8.685427 CATGGACATTAGAAATGTTGTGGATTA 58.315 33.333 6.72 0.00 31.52 1.75
2474 3295 8.642935 TGGACATTAGAAATGTTGTGGATTAA 57.357 30.769 6.72 0.00 31.52 1.40
2475 3296 9.083422 TGGACATTAGAAATGTTGTGGATTAAA 57.917 29.630 6.72 0.00 31.52 1.52
2476 3297 9.921637 GGACATTAGAAATGTTGTGGATTAAAA 57.078 29.630 6.72 0.00 31.52 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.394712 CACCCGTCACCTGCCTCC 62.395 72.222 0.00 0.00 0.00 4.30
1 2 3.178540 AACACCCGTCACCTGCCTC 62.179 63.158 0.00 0.00 0.00 4.70
2 3 3.168528 AACACCCGTCACCTGCCT 61.169 61.111 0.00 0.00 0.00 4.75
3 4 2.978010 CAACACCCGTCACCTGCC 60.978 66.667 0.00 0.00 0.00 4.85
4 5 2.978010 CCAACACCCGTCACCTGC 60.978 66.667 0.00 0.00 0.00 4.85
5 6 1.891919 CACCAACACCCGTCACCTG 60.892 63.158 0.00 0.00 0.00 4.00
6 7 2.319890 GACACCAACACCCGTCACCT 62.320 60.000 0.00 0.00 0.00 4.00
7 8 1.890510 GACACCAACACCCGTCACC 60.891 63.158 0.00 0.00 0.00 4.02
8 9 0.745128 TTGACACCAACACCCGTCAC 60.745 55.000 0.00 0.00 38.07 3.67
9 10 0.462937 CTTGACACCAACACCCGTCA 60.463 55.000 0.00 0.00 36.63 4.35
10 11 1.782028 GCTTGACACCAACACCCGTC 61.782 60.000 0.00 0.00 0.00 4.79
11 12 1.822186 GCTTGACACCAACACCCGT 60.822 57.895 0.00 0.00 0.00 5.28
12 13 1.507141 GAGCTTGACACCAACACCCG 61.507 60.000 0.00 0.00 0.00 5.28
13 14 0.465460 TGAGCTTGACACCAACACCC 60.465 55.000 0.00 0.00 0.00 4.61
14 15 0.947244 CTGAGCTTGACACCAACACC 59.053 55.000 0.00 0.00 0.00 4.16
15 16 1.869767 CTCTGAGCTTGACACCAACAC 59.130 52.381 0.00 0.00 0.00 3.32
16 17 1.762370 TCTCTGAGCTTGACACCAACA 59.238 47.619 0.00 0.00 0.00 3.33
17 18 2.533266 TCTCTGAGCTTGACACCAAC 57.467 50.000 0.00 0.00 0.00 3.77
18 19 2.369860 ACATCTCTGAGCTTGACACCAA 59.630 45.455 12.47 0.00 0.00 3.67
19 20 1.973515 ACATCTCTGAGCTTGACACCA 59.026 47.619 12.47 0.00 0.00 4.17
20 21 2.740981 CAACATCTCTGAGCTTGACACC 59.259 50.000 12.47 0.00 0.00 4.16
21 22 3.397482 ACAACATCTCTGAGCTTGACAC 58.603 45.455 12.47 0.00 0.00 3.67
22 23 3.758755 ACAACATCTCTGAGCTTGACA 57.241 42.857 12.47 0.00 0.00 3.58
23 24 4.815269 AGTACAACATCTCTGAGCTTGAC 58.185 43.478 12.47 8.23 0.00 3.18
24 25 6.605194 AGATAGTACAACATCTCTGAGCTTGA 59.395 38.462 12.47 0.00 0.00 3.02
25 26 6.804677 AGATAGTACAACATCTCTGAGCTTG 58.195 40.000 0.00 3.05 0.00 4.01
26 27 7.416964 AAGATAGTACAACATCTCTGAGCTT 57.583 36.000 0.00 0.00 31.10 3.74
27 28 7.416964 AAAGATAGTACAACATCTCTGAGCT 57.583 36.000 0.00 0.00 31.10 4.09
28 29 7.761704 TGAAAAGATAGTACAACATCTCTGAGC 59.238 37.037 0.00 0.00 31.10 4.26
29 30 9.299963 CTGAAAAGATAGTACAACATCTCTGAG 57.700 37.037 0.00 0.00 31.10 3.35
30 31 8.807118 ACTGAAAAGATAGTACAACATCTCTGA 58.193 33.333 0.00 0.00 31.10 3.27
31 32 8.994429 ACTGAAAAGATAGTACAACATCTCTG 57.006 34.615 0.00 0.00 31.10 3.35
37 38 9.391006 AGACAAAACTGAAAAGATAGTACAACA 57.609 29.630 0.00 0.00 0.00 3.33
40 41 9.391006 ACAAGACAAAACTGAAAAGATAGTACA 57.609 29.630 0.00 0.00 0.00 2.90
41 42 9.865484 GACAAGACAAAACTGAAAAGATAGTAC 57.135 33.333 0.00 0.00 0.00 2.73
42 43 9.607988 TGACAAGACAAAACTGAAAAGATAGTA 57.392 29.630 0.00 0.00 0.00 1.82
43 44 8.506168 TGACAAGACAAAACTGAAAAGATAGT 57.494 30.769 0.00 0.00 0.00 2.12
44 45 8.616076 ACTGACAAGACAAAACTGAAAAGATAG 58.384 33.333 0.00 0.00 0.00 2.08
45 46 8.506168 ACTGACAAGACAAAACTGAAAAGATA 57.494 30.769 0.00 0.00 0.00 1.98
46 47 7.337942 AGACTGACAAGACAAAACTGAAAAGAT 59.662 33.333 0.00 0.00 0.00 2.40
47 48 6.655003 AGACTGACAAGACAAAACTGAAAAGA 59.345 34.615 0.00 0.00 0.00 2.52
48 49 6.846350 AGACTGACAAGACAAAACTGAAAAG 58.154 36.000 0.00 0.00 0.00 2.27
49 50 6.817765 AGACTGACAAGACAAAACTGAAAA 57.182 33.333 0.00 0.00 0.00 2.29
50 51 6.817765 AAGACTGACAAGACAAAACTGAAA 57.182 33.333 0.00 0.00 0.00 2.69
51 52 6.817765 AAAGACTGACAAGACAAAACTGAA 57.182 33.333 0.00 0.00 0.00 3.02
52 53 7.552687 ACATAAAGACTGACAAGACAAAACTGA 59.447 33.333 0.00 0.00 0.00 3.41
53 54 7.641411 CACATAAAGACTGACAAGACAAAACTG 59.359 37.037 0.00 0.00 0.00 3.16
54 55 7.552687 TCACATAAAGACTGACAAGACAAAACT 59.447 33.333 0.00 0.00 0.00 2.66
55 56 7.640240 GTCACATAAAGACTGACAAGACAAAAC 59.360 37.037 0.00 0.00 35.39 2.43
56 57 7.552687 AGTCACATAAAGACTGACAAGACAAAA 59.447 33.333 0.00 0.00 44.23 2.44
57 58 7.047891 AGTCACATAAAGACTGACAAGACAAA 58.952 34.615 0.00 0.00 44.23 2.83
58 59 6.582636 AGTCACATAAAGACTGACAAGACAA 58.417 36.000 0.00 0.00 44.23 3.18
59 60 6.161855 AGTCACATAAAGACTGACAAGACA 57.838 37.500 0.00 0.00 44.23 3.41
60 61 6.480320 ACAAGTCACATAAAGACTGACAAGAC 59.520 38.462 0.00 0.00 45.11 3.01
61 62 6.582636 ACAAGTCACATAAAGACTGACAAGA 58.417 36.000 0.00 0.00 45.11 3.02
62 63 6.851222 ACAAGTCACATAAAGACTGACAAG 57.149 37.500 0.00 0.00 45.11 3.16
63 64 8.902540 AATACAAGTCACATAAAGACTGACAA 57.097 30.769 0.00 0.00 45.11 3.18
64 65 8.902540 AAATACAAGTCACATAAAGACTGACA 57.097 30.769 0.00 0.00 45.11 3.58
91 92 9.770097 ACGTGTCTCATTCATATCATAAAGAAT 57.230 29.630 0.00 0.00 0.00 2.40
101 102 9.091784 GCATGATAATACGTGTCTCATTCATAT 57.908 33.333 0.00 0.00 0.00 1.78
102 103 8.087750 TGCATGATAATACGTGTCTCATTCATA 58.912 33.333 0.00 0.00 0.00 2.15
103 104 6.930722 TGCATGATAATACGTGTCTCATTCAT 59.069 34.615 0.00 0.00 0.00 2.57
104 105 6.279882 TGCATGATAATACGTGTCTCATTCA 58.720 36.000 0.00 2.38 0.00 2.57
105 106 6.769608 TGCATGATAATACGTGTCTCATTC 57.230 37.500 0.00 0.00 0.00 2.67
106 107 7.552458 TTTGCATGATAATACGTGTCTCATT 57.448 32.000 0.00 0.00 0.00 2.57
107 108 7.552458 TTTTGCATGATAATACGTGTCTCAT 57.448 32.000 0.00 1.25 0.00 2.90
108 109 6.976636 TTTTGCATGATAATACGTGTCTCA 57.023 33.333 0.00 0.00 0.00 3.27
132 133 5.677567 TGTTCGGGTAAAGAGAGAGTTTTT 58.322 37.500 0.00 0.00 0.00 1.94
133 134 5.286267 TGTTCGGGTAAAGAGAGAGTTTT 57.714 39.130 0.00 0.00 0.00 2.43
134 135 4.950205 TGTTCGGGTAAAGAGAGAGTTT 57.050 40.909 0.00 0.00 0.00 2.66
191 194 7.382759 GCCATCTACTAAATACTAGACAGTTGC 59.617 40.741 0.00 0.00 36.14 4.17
198 201 8.005388 AGGAGTTGCCATCTACTAAATACTAGA 58.995 37.037 0.00 0.00 40.02 2.43
204 207 8.090788 TCTTTAGGAGTTGCCATCTACTAAAT 57.909 34.615 16.80 0.00 43.19 1.40
216 219 3.623510 GCAGTGGTATCTTTAGGAGTTGC 59.376 47.826 0.00 0.00 0.00 4.17
246 250 3.462678 GTGGGAGAGGAGACGGGC 61.463 72.222 0.00 0.00 0.00 6.13
262 266 2.752903 GACAACTGACAACTTTGGGTGT 59.247 45.455 0.00 0.00 0.00 4.16
267 271 4.985413 ACACATGACAACTGACAACTTTG 58.015 39.130 0.00 0.00 0.00 2.77
272 276 4.172505 GCAAAACACATGACAACTGACAA 58.827 39.130 0.00 0.00 0.00 3.18
277 281 2.101249 CCCTGCAAAACACATGACAACT 59.899 45.455 0.00 0.00 0.00 3.16
282 286 2.937519 TGTACCCTGCAAAACACATGA 58.062 42.857 0.00 0.00 0.00 3.07
345 349 6.864165 GCAAAATAACATGTTCGGGTAAAGAA 59.136 34.615 15.85 0.00 0.00 2.52
364 371 3.560896 GCACAACAAAGACATGGCAAAAT 59.439 39.130 0.00 0.00 0.00 1.82
434 445 8.354711 TGGTTTACTACAATTGCCATGATTTA 57.645 30.769 5.05 0.00 0.00 1.40
447 458 3.887352 TGTGTTGCCTGGTTTACTACAA 58.113 40.909 0.00 0.00 0.00 2.41
461 472 0.942410 CAGCTGTTGCCATGTGTTGC 60.942 55.000 5.25 0.00 40.80 4.17
475 486 2.582728 TTTTTGGACAACTGCAGCTG 57.417 45.000 15.27 15.40 0.00 4.24
476 487 2.224113 CCATTTTTGGACAACTGCAGCT 60.224 45.455 15.27 0.00 0.00 4.24
477 488 2.137523 CCATTTTTGGACAACTGCAGC 58.862 47.619 15.27 0.00 0.00 5.25
478 489 2.137523 GCCATTTTTGGACAACTGCAG 58.862 47.619 13.48 13.48 0.00 4.41
479 490 1.483827 TGCCATTTTTGGACAACTGCA 59.516 42.857 0.00 0.00 0.00 4.41
480 491 2.237393 TGCCATTTTTGGACAACTGC 57.763 45.000 0.00 0.00 0.00 4.40
481 492 3.991773 CAGATGCCATTTTTGGACAACTG 59.008 43.478 0.00 4.71 33.54 3.16
482 493 3.007182 CCAGATGCCATTTTTGGACAACT 59.993 43.478 0.00 0.00 0.00 3.16
483 494 3.328505 CCAGATGCCATTTTTGGACAAC 58.671 45.455 0.00 0.00 0.00 3.32
484 495 2.289569 GCCAGATGCCATTTTTGGACAA 60.290 45.455 7.70 0.00 0.00 3.18
485 496 1.275856 GCCAGATGCCATTTTTGGACA 59.724 47.619 7.70 0.00 0.00 4.02
486 497 1.275856 TGCCAGATGCCATTTTTGGAC 59.724 47.619 7.70 1.73 40.16 4.02
487 498 1.275856 GTGCCAGATGCCATTTTTGGA 59.724 47.619 7.70 0.00 40.16 3.53
488 499 1.276989 AGTGCCAGATGCCATTTTTGG 59.723 47.619 0.88 0.88 40.16 3.28
489 500 2.739913 CAAGTGCCAGATGCCATTTTTG 59.260 45.455 0.00 0.00 40.16 2.44
490 501 2.633967 TCAAGTGCCAGATGCCATTTTT 59.366 40.909 0.00 0.00 40.16 1.94
491 502 2.028748 GTCAAGTGCCAGATGCCATTTT 60.029 45.455 0.00 0.00 40.16 1.82
492 503 1.547372 GTCAAGTGCCAGATGCCATTT 59.453 47.619 0.00 0.00 40.16 2.32
493 504 1.180029 GTCAAGTGCCAGATGCCATT 58.820 50.000 0.00 0.00 40.16 3.16
494 505 0.682209 GGTCAAGTGCCAGATGCCAT 60.682 55.000 0.00 0.00 40.16 4.40
495 506 1.303561 GGTCAAGTGCCAGATGCCA 60.304 57.895 0.00 0.00 40.16 4.92
496 507 1.001641 AGGTCAAGTGCCAGATGCC 60.002 57.895 0.00 0.00 40.16 4.40
497 508 0.321919 TCAGGTCAAGTGCCAGATGC 60.322 55.000 0.00 0.00 41.77 3.91
498 509 1.277273 TCTCAGGTCAAGTGCCAGATG 59.723 52.381 0.00 0.00 0.00 2.90
499 510 1.649321 TCTCAGGTCAAGTGCCAGAT 58.351 50.000 0.00 0.00 0.00 2.90
500 511 1.277273 CATCTCAGGTCAAGTGCCAGA 59.723 52.381 0.00 0.00 0.00 3.86
533 592 0.324091 CCCTCTTTCATGGGCTGCTT 60.324 55.000 0.00 0.00 36.61 3.91
660 747 0.608856 TCCCACAAGCCTACGTACGA 60.609 55.000 24.41 4.69 0.00 3.43
662 749 0.175073 CCTCCCACAAGCCTACGTAC 59.825 60.000 0.00 0.00 0.00 3.67
663 750 0.974010 CCCTCCCACAAGCCTACGTA 60.974 60.000 0.00 0.00 0.00 3.57
732 823 1.555075 AGAACCAGTCCACACGCATAT 59.445 47.619 0.00 0.00 0.00 1.78
735 826 1.069090 GAGAACCAGTCCACACGCA 59.931 57.895 0.00 0.00 0.00 5.24
744 835 3.709653 TGTTGGTGTCTAAGAGAACCAGT 59.290 43.478 10.04 0.00 37.02 4.00
782 875 2.536761 CCGTGTGGGTGTTAAAGAGA 57.463 50.000 0.00 0.00 0.00 3.10
801 894 2.203153 ACGCCGATAATGCCCACC 60.203 61.111 0.00 0.00 0.00 4.61
913 1006 0.918799 TGTGGTGCATGGATACCCCT 60.919 55.000 0.00 0.00 36.10 4.79
914 1007 0.751643 GTGTGGTGCATGGATACCCC 60.752 60.000 0.00 0.00 36.10 4.95
918 1011 1.407299 GCTGAGTGTGGTGCATGGATA 60.407 52.381 0.00 0.00 0.00 2.59
963 1089 3.440522 TCGATCGATCTCTCTGTTGTTGT 59.559 43.478 22.43 0.00 0.00 3.32
964 1090 4.021191 TCGATCGATCTCTCTGTTGTTG 57.979 45.455 22.43 3.30 0.00 3.33
965 1091 3.488384 GCTCGATCGATCTCTCTGTTGTT 60.488 47.826 19.78 0.00 0.00 2.83
1024 1159 3.478274 GAGGGCCAGGAGAGCTGG 61.478 72.222 6.18 0.00 44.44 4.85
1116 1254 3.426568 GAGTTCCCAGCGCTGCAC 61.427 66.667 31.96 24.70 0.00 4.57
1163 1301 2.079925 CAGAGGTGCTTTGCTTACTCC 58.920 52.381 0.00 0.00 0.00 3.85
1176 1314 1.376942 CAAGAGGCTGGCAGAGGTG 60.377 63.158 20.86 4.23 0.00 4.00
1177 1315 3.076092 CAAGAGGCTGGCAGAGGT 58.924 61.111 20.86 0.18 0.00 3.85
1220 1843 4.380233 GCAGAGAAGCAAAGCAACACATAT 60.380 41.667 0.00 0.00 0.00 1.78
1226 1849 1.878734 AGAGCAGAGAAGCAAAGCAAC 59.121 47.619 0.00 0.00 36.85 4.17
1310 1933 1.612442 ATGGTGTAGGCTCCGGTGT 60.612 57.895 0.00 0.00 0.00 4.16
1363 1986 1.682854 CACCACTTTGCACTGGTTCAT 59.317 47.619 7.09 0.00 38.84 2.57
1364 1987 1.102154 CACCACTTTGCACTGGTTCA 58.898 50.000 7.09 0.00 38.84 3.18
1365 1988 0.385390 CCACCACTTTGCACTGGTTC 59.615 55.000 7.09 0.00 38.84 3.62
1493 2131 2.278857 CGATGAGGTTCTCGGCGG 60.279 66.667 7.21 0.00 32.35 6.13
1578 2302 0.322456 GGTAGGTTGGCATGCACAGA 60.322 55.000 21.36 0.00 0.00 3.41
1585 2309 2.357777 GGGTACATTGGTAGGTTGGCAT 60.358 50.000 0.00 0.00 0.00 4.40
1610 2334 6.407202 AGTAAAGCGAGGATAGTTGACAATT 58.593 36.000 0.00 0.00 0.00 2.32
1611 2335 5.978814 AGTAAAGCGAGGATAGTTGACAAT 58.021 37.500 0.00 0.00 0.00 2.71
1612 2336 5.401531 AGTAAAGCGAGGATAGTTGACAA 57.598 39.130 0.00 0.00 0.00 3.18
1667 2457 7.878127 TGCTTTACTTATGTGCTTCTTAGAAGT 59.122 33.333 21.25 6.03 0.00 3.01
1743 2535 5.726980 AGGCATAGCTTCATTTTTCACAA 57.273 34.783 0.00 0.00 0.00 3.33
1827 2626 1.692411 GGTACCATGGGAAATGAGCC 58.308 55.000 18.09 0.00 0.00 4.70
1874 2686 5.116680 GCGTTAGCCTATCGTAATACACAAG 59.883 44.000 4.32 0.00 37.42 3.16
1886 2698 1.287425 AAAGTGCGCGTTAGCCTATC 58.713 50.000 8.43 0.00 41.18 2.08
1888 2700 1.203052 AGTAAAGTGCGCGTTAGCCTA 59.797 47.619 8.43 0.00 41.18 3.93
1897 2709 2.673368 AGAACAGCATAGTAAAGTGCGC 59.327 45.455 0.00 0.00 45.69 6.09
1906 2718 5.011090 TCATAAGCGAAGAACAGCATAGT 57.989 39.130 0.00 0.00 35.48 2.12
1912 2724 7.489435 TGAGTTAATCTCATAAGCGAAGAACAG 59.511 37.037 4.31 0.00 46.77 3.16
1939 2753 8.005976 AGGAATAGAGGGAGTACTAGGTAAAAG 58.994 40.741 0.00 0.00 0.00 2.27
2016 2830 5.791336 TCTATACTACCTCGGTTCGTAGA 57.209 43.478 0.00 0.00 36.32 2.59
2017 2831 8.715191 ATAATCTATACTACCTCGGTTCGTAG 57.285 38.462 0.00 0.00 38.34 3.51
2099 2913 6.920569 ATACGGAGAAAACACCATCATAAC 57.079 37.500 0.00 0.00 0.00 1.89
2102 2916 5.057149 GCTATACGGAGAAAACACCATCAT 58.943 41.667 0.00 0.00 0.00 2.45
2115 2929 5.224562 GCAGTCTAGTATGCTATACGGAG 57.775 47.826 9.75 2.85 39.38 4.63
2137 2953 6.577103 TCAGAGCAAATACTATCTCCAACAG 58.423 40.000 0.00 0.00 0.00 3.16
2138 2954 6.381133 TCTCAGAGCAAATACTATCTCCAACA 59.619 38.462 0.00 0.00 0.00 3.33
2139 2955 6.810911 TCTCAGAGCAAATACTATCTCCAAC 58.189 40.000 0.00 0.00 0.00 3.77
2140 2956 6.041409 CCTCTCAGAGCAAATACTATCTCCAA 59.959 42.308 0.00 0.00 0.00 3.53
2141 2957 5.538053 CCTCTCAGAGCAAATACTATCTCCA 59.462 44.000 0.00 0.00 0.00 3.86
2142 2958 5.047377 CCCTCTCAGAGCAAATACTATCTCC 60.047 48.000 0.00 0.00 0.00 3.71
2143 2959 5.772672 TCCCTCTCAGAGCAAATACTATCTC 59.227 44.000 0.00 0.00 0.00 2.75
2147 2963 5.127845 CACTTCCCTCTCAGAGCAAATACTA 59.872 44.000 0.00 0.00 0.00 1.82
2149 2965 4.081420 TCACTTCCCTCTCAGAGCAAATAC 60.081 45.833 0.00 0.00 0.00 1.89
2164 2980 1.067060 GCACCAAACAAGTCACTTCCC 59.933 52.381 0.00 0.00 0.00 3.97
2173 2989 4.418013 TCATAATCACGCACCAAACAAG 57.582 40.909 0.00 0.00 0.00 3.16
2176 2992 4.094887 AGACATCATAATCACGCACCAAAC 59.905 41.667 0.00 0.00 0.00 2.93
2185 3001 8.440059 TGAAACGTGTAAAGACATCATAATCAC 58.560 33.333 0.00 0.00 38.04 3.06
2192 3008 6.307077 CGATACTGAAACGTGTAAAGACATCA 59.693 38.462 0.00 0.00 38.04 3.07
2194 3010 5.575606 CCGATACTGAAACGTGTAAAGACAT 59.424 40.000 0.00 0.00 38.04 3.06
2218 3034 1.732259 CCAACCGCTATCAACTGACAC 59.268 52.381 0.00 0.00 0.00 3.67
2227 3043 0.179468 TGGCTTACCCAACCGCTATC 59.821 55.000 0.00 0.00 41.82 2.08
2241 3057 1.871418 TAGGAGCTCTCATGTGGCTT 58.129 50.000 14.64 1.87 36.37 4.35
2248 3064 1.342819 GCGTGGAATAGGAGCTCTCAT 59.657 52.381 14.64 4.20 0.00 2.90
2277 3093 3.126831 GAGTGTCATAGCAGGAATTCCG 58.873 50.000 18.82 14.28 42.08 4.30
2296 3112 2.655077 TTTGGGGGCCAACCTGTGAG 62.655 60.000 15.84 0.00 43.82 3.51
2299 3115 2.201210 CTTTGGGGGCCAACCTGT 59.799 61.111 15.84 0.00 43.82 4.00
2302 3118 2.603473 GACCTTTGGGGGCCAACC 60.603 66.667 4.39 6.97 43.82 3.77
2304 3120 1.152355 CAAGACCTTTGGGGGCCAA 60.152 57.895 4.39 0.00 46.87 4.52
2313 3134 3.223661 CTGAGCGAGCAAGACCTTT 57.776 52.632 0.00 0.00 0.00 3.11
2327 3148 4.527583 GCAGGGAGCCGAGCTGAG 62.528 72.222 2.98 0.00 39.88 3.35
2368 3189 1.079405 ATCGGAGCGAGCGGAAAAA 60.079 52.632 0.00 0.00 39.91 1.94
2369 3190 1.809619 CATCGGAGCGAGCGGAAAA 60.810 57.895 0.00 0.00 39.91 2.29
2370 3191 2.202743 CATCGGAGCGAGCGGAAA 60.203 61.111 0.00 0.00 39.91 3.13
2371 3192 4.873129 GCATCGGAGCGAGCGGAA 62.873 66.667 0.00 0.00 39.91 4.30
2373 3194 3.888079 CTAGCATCGGAGCGAGCGG 62.888 68.421 0.00 0.00 39.91 5.52
2374 3195 2.428236 CTAGCATCGGAGCGAGCG 60.428 66.667 0.00 0.00 39.91 5.03
2376 3197 1.081509 GAGCTAGCATCGGAGCGAG 60.082 63.158 18.83 5.93 43.72 5.03
2377 3198 2.897922 CGAGCTAGCATCGGAGCGA 61.898 63.158 18.83 0.00 43.72 4.93
2378 3199 2.428236 CGAGCTAGCATCGGAGCG 60.428 66.667 18.83 4.85 43.72 5.03
2383 3204 1.004504 GCTTTTTCCGAGCTAGCATCG 60.005 52.381 18.83 20.80 39.86 3.84
2384 3205 2.009774 TGCTTTTTCCGAGCTAGCATC 58.990 47.619 18.83 10.52 40.75 3.91
2385 3206 2.012673 CTGCTTTTTCCGAGCTAGCAT 58.987 47.619 18.83 1.44 40.66 3.79
2386 3207 1.442769 CTGCTTTTTCCGAGCTAGCA 58.557 50.000 18.83 5.07 40.75 3.49
2387 3208 0.097849 GCTGCTTTTTCCGAGCTAGC 59.902 55.000 6.62 6.62 40.75 3.42
2388 3209 1.731720 AGCTGCTTTTTCCGAGCTAG 58.268 50.000 0.00 0.00 40.03 3.42
2389 3210 3.000727 GTTAGCTGCTTTTTCCGAGCTA 58.999 45.455 7.79 0.00 41.92 3.32
2390 3211 1.807142 GTTAGCTGCTTTTTCCGAGCT 59.193 47.619 7.79 0.00 44.05 4.09
2391 3212 1.464189 CGTTAGCTGCTTTTTCCGAGC 60.464 52.381 7.79 0.00 40.53 5.03
2392 3213 1.798813 ACGTTAGCTGCTTTTTCCGAG 59.201 47.619 7.79 0.00 0.00 4.63
2393 3214 1.873698 ACGTTAGCTGCTTTTTCCGA 58.126 45.000 7.79 0.00 0.00 4.55
2394 3215 2.681152 AACGTTAGCTGCTTTTTCCG 57.319 45.000 7.79 6.06 0.00 4.30
2395 3216 7.402811 AATAAAAACGTTAGCTGCTTTTTCC 57.597 32.000 7.79 0.00 30.45 3.13
2396 3217 8.536407 TCAAATAAAAACGTTAGCTGCTTTTTC 58.464 29.630 7.79 0.00 30.45 2.29
2397 3218 8.413899 TCAAATAAAAACGTTAGCTGCTTTTT 57.586 26.923 7.79 10.63 32.15 1.94
2398 3219 7.995463 TCAAATAAAAACGTTAGCTGCTTTT 57.005 28.000 7.79 3.62 0.00 2.27
2399 3220 7.995463 TTCAAATAAAAACGTTAGCTGCTTT 57.005 28.000 7.79 0.00 0.00 3.51
2400 3221 7.995463 TTTCAAATAAAAACGTTAGCTGCTT 57.005 28.000 7.79 0.00 0.00 3.91
2401 3222 7.995463 TTTTCAAATAAAAACGTTAGCTGCT 57.005 28.000 7.57 7.57 0.00 4.24
2427 3248 9.643693 GTCCATGAACATCTTTTCATTTAATGT 57.356 29.630 4.77 0.00 42.45 2.71
2428 3249 9.642327 TGTCCATGAACATCTTTTCATTTAATG 57.358 29.630 0.00 0.00 42.45 1.90
2432 3253 9.865321 CTAATGTCCATGAACATCTTTTCATTT 57.135 29.630 0.00 0.00 42.45 2.32
2433 3254 9.246670 TCTAATGTCCATGAACATCTTTTCATT 57.753 29.630 0.00 0.00 42.45 2.57
2434 3255 8.812513 TCTAATGTCCATGAACATCTTTTCAT 57.187 30.769 0.00 0.00 45.32 2.57
2435 3256 8.634335 TTCTAATGTCCATGAACATCTTTTCA 57.366 30.769 0.00 0.00 38.92 2.69
2437 3258 9.865321 CATTTCTAATGTCCATGAACATCTTTT 57.135 29.630 0.00 0.00 38.92 2.27
2438 3259 9.028284 ACATTTCTAATGTCCATGAACATCTTT 57.972 29.630 0.00 0.00 38.92 2.52
2439 3260 8.585471 ACATTTCTAATGTCCATGAACATCTT 57.415 30.769 0.00 0.00 38.92 2.40
2440 3261 8.464404 CAACATTTCTAATGTCCATGAACATCT 58.536 33.333 0.00 0.00 38.92 2.90
2441 3262 8.246180 ACAACATTTCTAATGTCCATGAACATC 58.754 33.333 0.00 0.00 38.92 3.06
2442 3263 8.030692 CACAACATTTCTAATGTCCATGAACAT 58.969 33.333 5.59 0.00 41.60 2.71
2443 3264 7.369607 CACAACATTTCTAATGTCCATGAACA 58.630 34.615 5.59 0.00 0.00 3.18
2444 3265 6.808212 CCACAACATTTCTAATGTCCATGAAC 59.192 38.462 5.59 0.00 0.00 3.18
2445 3266 6.718912 TCCACAACATTTCTAATGTCCATGAA 59.281 34.615 5.59 0.00 0.00 2.57
2446 3267 6.244654 TCCACAACATTTCTAATGTCCATGA 58.755 36.000 5.59 0.00 0.00 3.07
2447 3268 6.513806 TCCACAACATTTCTAATGTCCATG 57.486 37.500 5.59 3.97 0.00 3.66
2448 3269 7.722949 AATCCACAACATTTCTAATGTCCAT 57.277 32.000 5.59 0.00 0.00 3.41
2449 3270 8.642935 TTAATCCACAACATTTCTAATGTCCA 57.357 30.769 5.59 0.00 0.00 4.02
2450 3271 9.921637 TTTTAATCCACAACATTTCTAATGTCC 57.078 29.630 5.59 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.