Multiple sequence alignment - TraesCS6B01G078200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G078200 chr6B 100.000 2559 0 0 1 2559 54664024 54661466 0.000000e+00 4726.0
1 TraesCS6B01G078200 chr6B 84.860 1070 91 38 825 1843 55695519 55694470 0.000000e+00 1013.0
2 TraesCS6B01G078200 chr6B 81.755 1288 146 50 825 2059 54877222 54875971 0.000000e+00 994.0
3 TraesCS6B01G078200 chr6B 86.053 717 49 31 824 1496 55651503 55650794 0.000000e+00 723.0
4 TraesCS6B01G078200 chr6B 88.416 587 47 8 1913 2495 55122525 55123094 0.000000e+00 688.0
5 TraesCS6B01G078200 chr6B 88.396 586 49 14 819 1392 60928161 60928739 0.000000e+00 688.0
6 TraesCS6B01G078200 chr6B 87.416 596 54 18 907 1496 55121669 55122249 0.000000e+00 665.0
7 TraesCS6B01G078200 chr6B 81.744 493 62 16 2080 2558 54875913 54875435 1.110000e-103 387.0
8 TraesCS6B01G078200 chrUn 85.635 898 90 19 821 1705 103527717 103526846 0.000000e+00 907.0
9 TraesCS6B01G078200 chrUn 89.037 602 35 16 825 1396 103670337 103670937 0.000000e+00 717.0
10 TraesCS6B01G078200 chrUn 86.441 295 28 12 246 537 103669901 103670186 1.910000e-81 313.0
11 TraesCS6B01G078200 chrUn 93.617 47 2 1 556 601 103670176 103670222 4.570000e-08 69.4
12 TraesCS6B01G078200 chr6A 86.336 827 83 17 815 1628 29081698 29082507 0.000000e+00 874.0
13 TraesCS6B01G078200 chr6A 87.585 733 67 13 1772 2495 28772577 28771860 0.000000e+00 828.0
14 TraesCS6B01G078200 chr6A 91.552 580 34 11 825 1396 28666770 28666198 0.000000e+00 785.0
15 TraesCS6B01G078200 chr6A 90.435 575 40 13 819 1387 33547849 33548414 0.000000e+00 743.0
16 TraesCS6B01G078200 chr6A 85.467 750 64 31 855 1572 28640809 28641545 0.000000e+00 739.0
17 TraesCS6B01G078200 chr6A 90.547 201 18 1 31 230 28781591 28781391 5.430000e-67 265.0
18 TraesCS6B01G078200 chr6A 96.875 96 3 0 552 647 28773991 28773896 7.330000e-36 161.0
19 TraesCS6B01G078200 chr6A 83.432 169 18 5 1458 1625 28772894 28772735 5.700000e-32 148.0
20 TraesCS6B01G078200 chr6A 100.000 37 0 0 684 720 31264793 31264757 4.570000e-08 69.4
21 TraesCS6B01G078200 chr6A 93.182 44 3 0 688 731 28773878 28773835 5.910000e-07 65.8
22 TraesCS6B01G078200 chr6D 89.687 543 44 9 851 1387 28992891 28992355 0.000000e+00 682.0
23 TraesCS6B01G078200 chr7A 83.759 665 67 32 827 1456 628483508 628484166 2.190000e-165 592.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G078200 chr6B 54661466 54664024 2558 True 4726.000000 4726 100.000000 1 2559 1 chr6B.!!$R1 2558
1 TraesCS6B01G078200 chr6B 55694470 55695519 1049 True 1013.000000 1013 84.860000 825 1843 1 chr6B.!!$R3 1018
2 TraesCS6B01G078200 chr6B 55650794 55651503 709 True 723.000000 723 86.053000 824 1496 1 chr6B.!!$R2 672
3 TraesCS6B01G078200 chr6B 54875435 54877222 1787 True 690.500000 994 81.749500 825 2558 2 chr6B.!!$R4 1733
4 TraesCS6B01G078200 chr6B 60928161 60928739 578 False 688.000000 688 88.396000 819 1392 1 chr6B.!!$F1 573
5 TraesCS6B01G078200 chr6B 55121669 55123094 1425 False 676.500000 688 87.916000 907 2495 2 chr6B.!!$F2 1588
6 TraesCS6B01G078200 chrUn 103526846 103527717 871 True 907.000000 907 85.635000 821 1705 1 chrUn.!!$R1 884
7 TraesCS6B01G078200 chrUn 103669901 103670937 1036 False 366.466667 717 89.698333 246 1396 3 chrUn.!!$F1 1150
8 TraesCS6B01G078200 chr6A 29081698 29082507 809 False 874.000000 874 86.336000 815 1628 1 chr6A.!!$F2 813
9 TraesCS6B01G078200 chr6A 28666198 28666770 572 True 785.000000 785 91.552000 825 1396 1 chr6A.!!$R1 571
10 TraesCS6B01G078200 chr6A 33547849 33548414 565 False 743.000000 743 90.435000 819 1387 1 chr6A.!!$F3 568
11 TraesCS6B01G078200 chr6A 28640809 28641545 736 False 739.000000 739 85.467000 855 1572 1 chr6A.!!$F1 717
12 TraesCS6B01G078200 chr6A 28771860 28773991 2131 True 300.700000 828 90.268500 552 2495 4 chr6A.!!$R4 1943
13 TraesCS6B01G078200 chr6D 28992355 28992891 536 True 682.000000 682 89.687000 851 1387 1 chr6D.!!$R1 536
14 TraesCS6B01G078200 chr7A 628483508 628484166 658 False 592.000000 592 83.759000 827 1456 1 chr7A.!!$F1 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 133 0.036164 TGCTTTGCATGACTACCGGT 59.964 50.0 13.98 13.98 31.71 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 2616 1.001974 ACACTGAAGCGAGCACCATTA 59.998 47.619 0.0 0.0 0.0 1.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.637006 GGATTGTTTAGCCATACACACAA 57.363 39.130 0.00 0.00 0.00 3.33
23 24 5.399013 GGATTGTTTAGCCATACACACAAC 58.601 41.667 0.00 0.00 0.00 3.32
24 25 4.475763 TTGTTTAGCCATACACACAACG 57.524 40.909 0.00 0.00 0.00 4.10
25 26 3.729966 TGTTTAGCCATACACACAACGA 58.270 40.909 0.00 0.00 0.00 3.85
26 27 4.127907 TGTTTAGCCATACACACAACGAA 58.872 39.130 0.00 0.00 0.00 3.85
27 28 4.757657 TGTTTAGCCATACACACAACGAAT 59.242 37.500 0.00 0.00 0.00 3.34
28 29 5.106869 TGTTTAGCCATACACACAACGAATC 60.107 40.000 0.00 0.00 0.00 2.52
29 30 3.052455 AGCCATACACACAACGAATCA 57.948 42.857 0.00 0.00 0.00 2.57
30 31 3.407698 AGCCATACACACAACGAATCAA 58.592 40.909 0.00 0.00 0.00 2.57
31 32 3.188460 AGCCATACACACAACGAATCAAC 59.812 43.478 0.00 0.00 0.00 3.18
32 33 3.731855 CCATACACACAACGAATCAACG 58.268 45.455 0.00 0.00 39.31 4.10
33 34 3.430556 CCATACACACAACGAATCAACGA 59.569 43.478 0.00 0.00 37.03 3.85
34 35 4.084276 CCATACACACAACGAATCAACGAA 60.084 41.667 0.00 0.00 37.03 3.85
35 36 5.390461 CCATACACACAACGAATCAACGAAT 60.390 40.000 0.00 0.00 37.03 3.34
36 37 4.128554 ACACACAACGAATCAACGAATC 57.871 40.909 0.00 0.00 37.03 2.52
37 38 3.558006 ACACACAACGAATCAACGAATCA 59.442 39.130 0.00 0.00 37.03 2.57
38 39 4.034626 ACACACAACGAATCAACGAATCAA 59.965 37.500 0.00 0.00 37.03 2.57
39 40 4.375698 CACACAACGAATCAACGAATCAAC 59.624 41.667 0.00 0.00 37.03 3.18
40 41 4.272504 ACACAACGAATCAACGAATCAACT 59.727 37.500 0.00 0.00 37.03 3.16
41 42 4.840772 CACAACGAATCAACGAATCAACTC 59.159 41.667 0.00 0.00 37.03 3.01
42 43 4.750098 ACAACGAATCAACGAATCAACTCT 59.250 37.500 0.00 0.00 37.03 3.24
43 44 5.107453 ACAACGAATCAACGAATCAACTCTC 60.107 40.000 0.00 0.00 37.03 3.20
44 45 4.556233 ACGAATCAACGAATCAACTCTCA 58.444 39.130 0.00 0.00 37.03 3.27
45 46 4.386049 ACGAATCAACGAATCAACTCTCAC 59.614 41.667 0.00 0.00 37.03 3.51
46 47 4.201628 CGAATCAACGAATCAACTCTCACC 60.202 45.833 0.00 0.00 35.09 4.02
47 48 4.543590 ATCAACGAATCAACTCTCACCT 57.456 40.909 0.00 0.00 0.00 4.00
48 49 3.653344 TCAACGAATCAACTCTCACCTG 58.347 45.455 0.00 0.00 0.00 4.00
49 50 2.738846 CAACGAATCAACTCTCACCTGG 59.261 50.000 0.00 0.00 0.00 4.45
50 51 1.338200 ACGAATCAACTCTCACCTGGC 60.338 52.381 0.00 0.00 0.00 4.85
51 52 1.066573 CGAATCAACTCTCACCTGGCT 60.067 52.381 0.00 0.00 0.00 4.75
52 53 2.166459 CGAATCAACTCTCACCTGGCTA 59.834 50.000 0.00 0.00 0.00 3.93
53 54 3.736433 CGAATCAACTCTCACCTGGCTAG 60.736 52.174 0.00 0.00 0.00 3.42
54 55 0.898320 TCAACTCTCACCTGGCTAGC 59.102 55.000 6.04 6.04 0.00 3.42
55 56 0.901124 CAACTCTCACCTGGCTAGCT 59.099 55.000 15.72 0.00 0.00 3.32
56 57 2.103373 CAACTCTCACCTGGCTAGCTA 58.897 52.381 15.72 7.83 0.00 3.32
57 58 2.497675 CAACTCTCACCTGGCTAGCTAA 59.502 50.000 15.72 2.40 0.00 3.09
58 59 2.821437 ACTCTCACCTGGCTAGCTAAA 58.179 47.619 15.72 0.00 0.00 1.85
59 60 3.173965 ACTCTCACCTGGCTAGCTAAAA 58.826 45.455 15.72 0.00 0.00 1.52
60 61 3.583086 ACTCTCACCTGGCTAGCTAAAAA 59.417 43.478 15.72 0.00 0.00 1.94
86 87 9.860650 AATGTAAATAAGTATATGGGCAACAGA 57.139 29.630 0.00 0.00 39.74 3.41
91 92 4.559862 AGTATATGGGCAACAGATAGGC 57.440 45.455 0.00 0.00 34.17 3.93
92 93 3.909995 AGTATATGGGCAACAGATAGGCA 59.090 43.478 0.00 0.00 34.17 4.75
93 94 3.882102 ATATGGGCAACAGATAGGCAA 57.118 42.857 0.00 0.00 39.74 4.52
94 95 2.530460 ATGGGCAACAGATAGGCAAA 57.470 45.000 0.00 0.00 39.74 3.68
95 96 2.530460 TGGGCAACAGATAGGCAAAT 57.470 45.000 0.00 0.00 39.74 2.32
96 97 2.818921 TGGGCAACAGATAGGCAAATT 58.181 42.857 0.00 0.00 39.74 1.82
97 98 3.974719 TGGGCAACAGATAGGCAAATTA 58.025 40.909 0.00 0.00 39.74 1.40
98 99 3.953612 TGGGCAACAGATAGGCAAATTAG 59.046 43.478 0.00 0.00 39.74 1.73
99 100 3.954258 GGGCAACAGATAGGCAAATTAGT 59.046 43.478 0.00 0.00 39.74 2.24
100 101 4.202050 GGGCAACAGATAGGCAAATTAGTG 60.202 45.833 0.00 0.00 39.74 2.74
101 102 4.640201 GGCAACAGATAGGCAAATTAGTGA 59.360 41.667 0.00 0.00 0.00 3.41
102 103 5.220931 GGCAACAGATAGGCAAATTAGTGAG 60.221 44.000 0.00 0.00 0.00 3.51
103 104 5.355350 GCAACAGATAGGCAAATTAGTGAGT 59.645 40.000 0.00 0.00 0.00 3.41
104 105 6.127897 GCAACAGATAGGCAAATTAGTGAGTT 60.128 38.462 0.00 0.00 0.00 3.01
105 106 7.575720 GCAACAGATAGGCAAATTAGTGAGTTT 60.576 37.037 0.00 0.00 0.00 2.66
106 107 8.299570 CAACAGATAGGCAAATTAGTGAGTTTT 58.700 33.333 0.00 0.00 0.00 2.43
107 108 7.820648 ACAGATAGGCAAATTAGTGAGTTTTG 58.179 34.615 0.00 0.00 34.30 2.44
120 121 3.783111 GAGTTTTGCTCATTGCTTTGC 57.217 42.857 0.00 0.00 43.58 3.68
121 122 3.125316 GAGTTTTGCTCATTGCTTTGCA 58.875 40.909 0.00 0.00 43.58 4.08
122 123 3.735591 AGTTTTGCTCATTGCTTTGCAT 58.264 36.364 0.00 0.00 43.37 3.96
123 124 3.496884 AGTTTTGCTCATTGCTTTGCATG 59.503 39.130 0.00 0.00 43.37 4.06
124 125 3.388345 TTTGCTCATTGCTTTGCATGA 57.612 38.095 0.00 0.00 43.37 3.07
125 126 2.357327 TGCTCATTGCTTTGCATGAC 57.643 45.000 0.00 0.00 43.37 3.06
126 127 1.890489 TGCTCATTGCTTTGCATGACT 59.110 42.857 0.00 0.00 43.37 3.41
127 128 3.083293 TGCTCATTGCTTTGCATGACTA 58.917 40.909 0.00 0.00 43.37 2.59
128 129 3.119743 TGCTCATTGCTTTGCATGACTAC 60.120 43.478 0.00 0.00 43.37 2.73
129 130 3.733077 GCTCATTGCTTTGCATGACTACC 60.733 47.826 0.00 0.00 38.76 3.18
130 131 2.419673 TCATTGCTTTGCATGACTACCG 59.580 45.455 0.00 0.00 38.76 4.02
131 132 1.164411 TTGCTTTGCATGACTACCGG 58.836 50.000 0.00 0.00 38.76 5.28
132 133 0.036164 TGCTTTGCATGACTACCGGT 59.964 50.000 13.98 13.98 31.71 5.28
133 134 0.447801 GCTTTGCATGACTACCGGTG 59.552 55.000 19.93 10.05 0.00 4.94
134 135 1.808411 CTTTGCATGACTACCGGTGT 58.192 50.000 19.93 13.62 0.00 4.16
135 136 1.732259 CTTTGCATGACTACCGGTGTC 59.268 52.381 19.93 21.65 35.21 3.67
136 137 0.682292 TTGCATGACTACCGGTGTCA 59.318 50.000 29.42 29.42 46.58 3.58
137 138 0.037697 TGCATGACTACCGGTGTCAC 60.038 55.000 29.70 21.94 45.57 3.67
138 139 0.037697 GCATGACTACCGGTGTCACA 60.038 55.000 29.70 19.67 45.57 3.58
139 140 1.405526 GCATGACTACCGGTGTCACAT 60.406 52.381 29.70 20.70 45.57 3.21
140 141 2.935238 GCATGACTACCGGTGTCACATT 60.935 50.000 29.70 18.16 45.57 2.71
141 142 2.448926 TGACTACCGGTGTCACATTG 57.551 50.000 26.04 7.95 39.23 2.82
142 143 1.076332 GACTACCGGTGTCACATTGC 58.924 55.000 19.93 0.00 34.80 3.56
143 144 0.669318 ACTACCGGTGTCACATTGCG 60.669 55.000 19.93 0.00 0.00 4.85
144 145 1.358725 CTACCGGTGTCACATTGCGG 61.359 60.000 19.93 14.53 0.00 5.69
145 146 2.789845 TACCGGTGTCACATTGCGGG 62.790 60.000 19.93 6.98 0.00 6.13
146 147 2.358125 CGGTGTCACATTGCGGGA 60.358 61.111 5.12 0.00 0.00 5.14
147 148 2.677003 CGGTGTCACATTGCGGGAC 61.677 63.158 5.12 0.00 0.00 4.46
148 149 1.599518 GGTGTCACATTGCGGGACA 60.600 57.895 5.12 0.00 39.09 4.02
149 150 4.057224 TGTCACATTGCGGGACAC 57.943 55.556 0.00 0.00 36.69 3.67
151 152 2.358125 TCACATTGCGGGACACGG 60.358 61.111 0.00 0.00 44.51 4.94
152 153 2.358125 CACATTGCGGGACACGGA 60.358 61.111 0.00 0.00 44.51 4.69
153 154 2.047274 ACATTGCGGGACACGGAG 60.047 61.111 0.00 0.00 45.88 4.63
154 155 2.047274 CATTGCGGGACACGGAGT 60.047 61.111 0.00 0.00 45.88 3.85
155 156 1.671054 CATTGCGGGACACGGAGTT 60.671 57.895 0.00 0.00 45.88 3.01
156 157 1.072505 ATTGCGGGACACGGAGTTT 59.927 52.632 0.00 0.00 45.88 2.66
157 158 0.536460 ATTGCGGGACACGGAGTTTT 60.536 50.000 0.00 0.00 45.88 2.43
158 159 1.440938 TTGCGGGACACGGAGTTTTG 61.441 55.000 0.00 0.00 45.88 2.44
159 160 2.943653 CGGGACACGGAGTTTTGC 59.056 61.111 0.00 0.00 41.61 3.68
160 161 2.613506 CGGGACACGGAGTTTTGCC 61.614 63.158 0.00 0.00 41.61 4.52
161 162 1.228154 GGGACACGGAGTTTTGCCT 60.228 57.895 0.00 0.00 41.61 4.75
162 163 1.235281 GGGACACGGAGTTTTGCCTC 61.235 60.000 0.00 0.00 41.61 4.70
163 164 1.235281 GGACACGGAGTTTTGCCTCC 61.235 60.000 0.00 0.00 46.37 4.30
169 170 1.822506 GGAGTTTTGCCTCCCTGTAC 58.177 55.000 0.00 0.00 44.49 2.90
170 171 1.073284 GGAGTTTTGCCTCCCTGTACA 59.927 52.381 0.00 0.00 44.49 2.90
171 172 2.152016 GAGTTTTGCCTCCCTGTACAC 58.848 52.381 0.00 0.00 0.00 2.90
172 173 1.493022 AGTTTTGCCTCCCTGTACACA 59.507 47.619 0.00 0.00 0.00 3.72
173 174 2.108250 AGTTTTGCCTCCCTGTACACAT 59.892 45.455 0.00 0.00 0.00 3.21
174 175 2.198827 TTTGCCTCCCTGTACACATG 57.801 50.000 0.00 0.00 0.00 3.21
175 176 0.322456 TTGCCTCCCTGTACACATGC 60.322 55.000 0.00 0.00 0.00 4.06
176 177 1.299648 GCCTCCCTGTACACATGCA 59.700 57.895 0.00 0.00 0.00 3.96
177 178 1.026718 GCCTCCCTGTACACATGCAC 61.027 60.000 0.00 0.00 0.00 4.57
178 179 0.392998 CCTCCCTGTACACATGCACC 60.393 60.000 0.00 0.00 0.00 5.01
179 180 0.392998 CTCCCTGTACACATGCACCC 60.393 60.000 0.00 0.00 0.00 4.61
180 181 1.130678 TCCCTGTACACATGCACCCA 61.131 55.000 0.00 0.00 0.00 4.51
181 182 0.960364 CCCTGTACACATGCACCCAC 60.960 60.000 0.00 0.00 0.00 4.61
182 183 1.298157 CCTGTACACATGCACCCACG 61.298 60.000 0.00 0.00 0.00 4.94
183 184 0.602638 CTGTACACATGCACCCACGT 60.603 55.000 0.00 0.00 0.00 4.49
184 185 0.882484 TGTACACATGCACCCACGTG 60.882 55.000 9.08 9.08 40.74 4.49
185 186 0.601576 GTACACATGCACCCACGTGA 60.602 55.000 19.30 0.00 43.14 4.35
186 187 0.106894 TACACATGCACCCACGTGAA 59.893 50.000 19.30 0.00 43.14 3.18
187 188 1.282570 CACATGCACCCACGTGAAC 59.717 57.895 19.30 3.55 43.14 3.18
188 189 1.153066 ACATGCACCCACGTGAACA 60.153 52.632 19.30 9.61 43.14 3.18
189 190 1.165907 ACATGCACCCACGTGAACAG 61.166 55.000 19.30 5.19 43.14 3.16
190 191 1.148273 ATGCACCCACGTGAACAGT 59.852 52.632 19.30 5.88 43.14 3.55
191 192 0.394938 ATGCACCCACGTGAACAGTA 59.605 50.000 19.30 3.80 43.14 2.74
192 193 0.178301 TGCACCCACGTGAACAGTAA 59.822 50.000 19.30 0.00 43.14 2.24
193 194 0.865769 GCACCCACGTGAACAGTAAG 59.134 55.000 19.30 0.00 43.14 2.34
194 195 1.539496 GCACCCACGTGAACAGTAAGA 60.539 52.381 19.30 0.00 43.14 2.10
195 196 2.132762 CACCCACGTGAACAGTAAGAC 58.867 52.381 19.30 0.00 43.14 3.01
196 197 1.758280 ACCCACGTGAACAGTAAGACA 59.242 47.619 19.30 0.00 0.00 3.41
197 198 2.168936 ACCCACGTGAACAGTAAGACAA 59.831 45.455 19.30 0.00 0.00 3.18
198 199 3.199677 CCCACGTGAACAGTAAGACAAA 58.800 45.455 19.30 0.00 0.00 2.83
199 200 3.623960 CCCACGTGAACAGTAAGACAAAA 59.376 43.478 19.30 0.00 0.00 2.44
200 201 4.095185 CCCACGTGAACAGTAAGACAAAAA 59.905 41.667 19.30 0.00 0.00 1.94
201 202 5.263185 CCACGTGAACAGTAAGACAAAAAG 58.737 41.667 19.30 0.00 0.00 2.27
202 203 5.064198 CCACGTGAACAGTAAGACAAAAAGA 59.936 40.000 19.30 0.00 0.00 2.52
203 204 6.238374 CCACGTGAACAGTAAGACAAAAAGAT 60.238 38.462 19.30 0.00 0.00 2.40
204 205 6.628856 CACGTGAACAGTAAGACAAAAAGATG 59.371 38.462 10.90 0.00 0.00 2.90
205 206 6.537301 ACGTGAACAGTAAGACAAAAAGATGA 59.463 34.615 0.00 0.00 0.00 2.92
206 207 7.226720 ACGTGAACAGTAAGACAAAAAGATGAT 59.773 33.333 0.00 0.00 0.00 2.45
207 208 7.531871 CGTGAACAGTAAGACAAAAAGATGATG 59.468 37.037 0.00 0.00 0.00 3.07
208 209 8.345565 GTGAACAGTAAGACAAAAAGATGATGT 58.654 33.333 0.00 0.00 0.00 3.06
209 210 8.902806 TGAACAGTAAGACAAAAAGATGATGTT 58.097 29.630 0.00 0.00 0.00 2.71
210 211 9.736023 GAACAGTAAGACAAAAAGATGATGTTT 57.264 29.630 0.00 0.00 0.00 2.83
212 213 9.736023 ACAGTAAGACAAAAAGATGATGTTTTC 57.264 29.630 0.55 0.00 0.00 2.29
213 214 9.734620 CAGTAAGACAAAAAGATGATGTTTTCA 57.265 29.630 0.55 0.00 39.12 2.69
221 222 9.801714 CAAAAAGATGATGTTTTCAAATACTGC 57.198 29.630 0.55 0.00 38.03 4.40
222 223 8.538409 AAAAGATGATGTTTTCAAATACTGCC 57.462 30.769 0.00 0.00 38.03 4.85
223 224 5.883661 AGATGATGTTTTCAAATACTGCCG 58.116 37.500 0.00 0.00 38.03 5.69
224 225 3.832276 TGATGTTTTCAAATACTGCCGC 58.168 40.909 0.00 0.00 0.00 6.53
225 226 2.323939 TGTTTTCAAATACTGCCGCG 57.676 45.000 0.00 0.00 0.00 6.46
226 227 1.604755 TGTTTTCAAATACTGCCGCGT 59.395 42.857 4.92 0.00 0.00 6.01
227 228 2.033550 TGTTTTCAAATACTGCCGCGTT 59.966 40.909 4.92 0.00 0.00 4.84
228 229 2.323939 TTTCAAATACTGCCGCGTTG 57.676 45.000 4.92 0.56 0.00 4.10
229 230 0.519519 TTCAAATACTGCCGCGTTGG 59.480 50.000 4.92 0.00 42.50 3.77
230 231 0.604243 TCAAATACTGCCGCGTTGGT 60.604 50.000 4.92 2.67 41.21 3.67
231 232 0.239879 CAAATACTGCCGCGTTGGTT 59.760 50.000 4.92 0.00 41.21 3.67
232 233 0.519961 AAATACTGCCGCGTTGGTTC 59.480 50.000 4.92 0.00 41.21 3.62
233 234 0.321298 AATACTGCCGCGTTGGTTCT 60.321 50.000 4.92 0.00 41.21 3.01
234 235 0.739813 ATACTGCCGCGTTGGTTCTC 60.740 55.000 4.92 0.00 41.21 2.87
235 236 3.777925 CTGCCGCGTTGGTTCTCG 61.778 66.667 4.92 0.00 41.21 4.04
241 242 3.244105 CGTTGGTTCTCGCACTGG 58.756 61.111 0.00 0.00 0.00 4.00
242 243 1.594293 CGTTGGTTCTCGCACTGGT 60.594 57.895 0.00 0.00 0.00 4.00
243 244 1.557443 CGTTGGTTCTCGCACTGGTC 61.557 60.000 0.00 0.00 0.00 4.02
244 245 0.249911 GTTGGTTCTCGCACTGGTCT 60.250 55.000 0.00 0.00 0.00 3.85
268 269 0.823356 TGCCACAGCCCTCTTTGAAC 60.823 55.000 0.00 0.00 38.69 3.18
312 314 1.420138 TGCGGAGGGAGAAAAGACTTT 59.580 47.619 0.00 0.00 0.00 2.66
515 517 7.091443 AGTGAAAACCGATTTAACAAACACAA 58.909 30.769 0.00 0.00 35.13 3.33
601 603 7.290014 ACAAAACCTGTTGAAAGGGATCTTTAT 59.710 33.333 0.00 0.00 42.11 1.40
648 664 4.130118 CTGAGCGCCAAATAGGAAATACT 58.870 43.478 2.29 0.00 41.22 2.12
650 666 5.054477 TGAGCGCCAAATAGGAAATACTAC 58.946 41.667 2.29 0.00 41.22 2.73
652 668 4.814771 AGCGCCAAATAGGAAATACTACAC 59.185 41.667 2.29 0.00 41.22 2.90
653 669 4.573201 GCGCCAAATAGGAAATACTACACA 59.427 41.667 0.00 0.00 41.22 3.72
655 671 5.276678 CGCCAAATAGGAAATACTACACACG 60.277 44.000 0.00 0.00 41.22 4.49
656 672 5.583457 GCCAAATAGGAAATACTACACACGT 59.417 40.000 0.00 0.00 41.22 4.49
657 673 6.456449 GCCAAATAGGAAATACTACACACGTG 60.456 42.308 15.48 15.48 41.22 4.49
658 674 6.814644 CCAAATAGGAAATACTACACACGTGA 59.185 38.462 25.01 0.00 41.22 4.35
659 675 7.332430 CCAAATAGGAAATACTACACACGTGAA 59.668 37.037 25.01 6.19 41.22 3.18
660 676 8.714179 CAAATAGGAAATACTACACACGTGAAA 58.286 33.333 25.01 5.80 0.00 2.69
664 680 5.389516 GGAAATACTACACACGTGAAAGCTG 60.390 44.000 25.01 12.24 0.00 4.24
679 695 4.749310 CTGTCGGCGGCTTGAGCT 62.749 66.667 14.51 0.00 41.70 4.09
687 703 2.671177 CGGCTTGAGCTGTCAACGG 61.671 63.158 0.00 0.00 42.29 4.44
690 706 1.302033 CTTGAGCTGTCAACGGGCT 60.302 57.895 0.00 0.00 37.79 5.19
717 733 1.820010 GCTCCCAAGGCCCAAAACAG 61.820 60.000 0.00 0.00 0.00 3.16
719 735 0.854218 TCCCAAGGCCCAAAACAGTA 59.146 50.000 0.00 0.00 0.00 2.74
722 738 1.613437 CCAAGGCCCAAAACAGTAGTG 59.387 52.381 0.00 0.00 0.00 2.74
731 747 3.469629 CAAAACAGTAGTGACGAATGCG 58.530 45.455 4.09 0.00 44.79 4.73
732 748 1.710013 AACAGTAGTGACGAATGCGG 58.290 50.000 4.09 0.00 43.17 5.69
733 749 0.885879 ACAGTAGTGACGAATGCGGA 59.114 50.000 4.09 0.00 43.17 5.54
734 750 1.476891 ACAGTAGTGACGAATGCGGAT 59.523 47.619 4.09 0.00 43.17 4.18
735 751 1.854743 CAGTAGTGACGAATGCGGATG 59.145 52.381 0.00 0.00 43.17 3.51
736 752 1.202417 AGTAGTGACGAATGCGGATGG 60.202 52.381 0.00 0.00 43.17 3.51
737 753 0.821517 TAGTGACGAATGCGGATGGT 59.178 50.000 0.00 0.00 43.17 3.55
738 754 0.460284 AGTGACGAATGCGGATGGTC 60.460 55.000 12.53 12.53 43.17 4.02
739 755 0.460284 GTGACGAATGCGGATGGTCT 60.460 55.000 17.89 0.00 43.17 3.85
740 756 1.107945 TGACGAATGCGGATGGTCTA 58.892 50.000 17.89 6.30 43.17 2.59
741 757 1.202371 TGACGAATGCGGATGGTCTAC 60.202 52.381 17.89 0.91 43.17 2.59
742 758 0.821517 ACGAATGCGGATGGTCTACA 59.178 50.000 0.00 0.00 43.17 2.74
743 759 1.209128 CGAATGCGGATGGTCTACAC 58.791 55.000 0.00 0.00 0.00 2.90
744 760 1.209128 GAATGCGGATGGTCTACACG 58.791 55.000 0.00 0.00 0.00 4.49
745 761 0.821517 AATGCGGATGGTCTACACGA 59.178 50.000 0.00 0.00 0.00 4.35
746 762 0.102481 ATGCGGATGGTCTACACGAC 59.898 55.000 0.00 0.00 42.07 4.34
747 763 0.963856 TGCGGATGGTCTACACGACT 60.964 55.000 0.00 0.00 42.44 4.18
748 764 0.525668 GCGGATGGTCTACACGACTG 60.526 60.000 0.00 0.00 42.44 3.51
749 765 0.525668 CGGATGGTCTACACGACTGC 60.526 60.000 0.00 0.00 42.44 4.40
750 766 0.530744 GGATGGTCTACACGACTGCA 59.469 55.000 0.00 0.00 42.44 4.41
751 767 1.630148 GATGGTCTACACGACTGCAC 58.370 55.000 0.00 0.00 42.44 4.57
752 768 0.966179 ATGGTCTACACGACTGCACA 59.034 50.000 0.00 0.00 42.44 4.57
753 769 0.313987 TGGTCTACACGACTGCACAG 59.686 55.000 0.00 0.00 42.44 3.66
754 770 0.596577 GGTCTACACGACTGCACAGA 59.403 55.000 4.31 0.00 42.44 3.41
755 771 1.000607 GGTCTACACGACTGCACAGAA 60.001 52.381 4.31 0.00 42.44 3.02
756 772 2.352814 GGTCTACACGACTGCACAGAAT 60.353 50.000 4.31 0.00 42.44 2.40
757 773 3.318017 GTCTACACGACTGCACAGAATT 58.682 45.455 4.31 0.00 39.61 2.17
758 774 3.741344 GTCTACACGACTGCACAGAATTT 59.259 43.478 4.31 0.00 39.61 1.82
759 775 3.740832 TCTACACGACTGCACAGAATTTG 59.259 43.478 4.31 0.00 0.00 2.32
760 776 1.002468 ACACGACTGCACAGAATTTGC 60.002 47.619 4.31 0.00 40.63 3.68
761 777 1.265095 CACGACTGCACAGAATTTGCT 59.735 47.619 4.31 0.00 40.86 3.91
762 778 1.532868 ACGACTGCACAGAATTTGCTC 59.467 47.619 4.31 0.00 40.86 4.26
763 779 1.532437 CGACTGCACAGAATTTGCTCA 59.468 47.619 4.31 0.00 40.86 4.26
764 780 2.031769 CGACTGCACAGAATTTGCTCAA 60.032 45.455 4.31 0.00 40.86 3.02
765 781 3.548616 CGACTGCACAGAATTTGCTCAAA 60.549 43.478 4.31 0.00 40.86 2.69
766 782 4.362279 GACTGCACAGAATTTGCTCAAAA 58.638 39.130 4.31 0.00 40.86 2.44
767 783 4.757594 ACTGCACAGAATTTGCTCAAAAA 58.242 34.783 4.31 0.00 40.86 1.94
790 806 6.803154 AAAAATACAGTCTACACAGAAGCC 57.197 37.500 0.00 0.00 30.85 4.35
791 807 4.473477 AATACAGTCTACACAGAAGCCC 57.527 45.455 0.00 0.00 30.85 5.19
792 808 0.603569 ACAGTCTACACAGAAGCCCG 59.396 55.000 0.00 0.00 30.85 6.13
793 809 0.888619 CAGTCTACACAGAAGCCCGA 59.111 55.000 0.00 0.00 30.85 5.14
794 810 1.272490 CAGTCTACACAGAAGCCCGAA 59.728 52.381 0.00 0.00 30.85 4.30
795 811 1.546476 AGTCTACACAGAAGCCCGAAG 59.454 52.381 0.00 0.00 30.85 3.79
796 812 1.404315 GTCTACACAGAAGCCCGAAGG 60.404 57.143 0.00 0.00 39.42 3.46
982 1017 3.952628 CTCCCCGGAAACCTCGCAC 62.953 68.421 0.73 0.00 0.00 5.34
1032 1071 0.909610 ATCTCATCCCACCACACCGT 60.910 55.000 0.00 0.00 0.00 4.83
1054 1136 2.723746 CACCAGCAGCAACACACC 59.276 61.111 0.00 0.00 0.00 4.16
1055 1137 2.120282 CACCAGCAGCAACACACCA 61.120 57.895 0.00 0.00 0.00 4.17
1062 1167 1.752694 AGCAACACACCACCACACC 60.753 57.895 0.00 0.00 0.00 4.16
1064 1169 1.450491 CAACACACCACCACACCGA 60.450 57.895 0.00 0.00 0.00 4.69
1065 1170 1.153249 AACACACCACCACACCGAG 60.153 57.895 0.00 0.00 0.00 4.63
1435 1585 5.419542 CACCAGATTTGTGCTAGTAGCTAA 58.580 41.667 22.34 14.45 42.97 3.09
1438 1588 6.380274 ACCAGATTTGTGCTAGTAGCTAACTA 59.620 38.462 22.34 8.02 42.97 2.24
1456 1611 3.585862 ACTAATGGCTGTGTAGTGTTCG 58.414 45.455 0.00 0.00 0.00 3.95
1468 1867 0.395173 AGTGTTCGTGGGCTTTGGTT 60.395 50.000 0.00 0.00 0.00 3.67
1510 1914 1.678101 GTATGTCCTGGCCTTGATTGC 59.322 52.381 3.32 0.00 0.00 3.56
1531 1941 3.347216 CTGTTTGGATGTAGTTCTGGGG 58.653 50.000 0.00 0.00 0.00 4.96
1572 1983 4.215399 TGGTTTACCTTGAATTCTTCTGCG 59.785 41.667 7.05 0.00 36.82 5.18
1574 1985 5.383130 GTTTACCTTGAATTCTTCTGCGAC 58.617 41.667 7.05 0.00 0.00 5.19
1578 1989 2.386661 TGAATTCTTCTGCGACCTCC 57.613 50.000 7.05 0.00 0.00 4.30
1585 1996 0.832135 TTCTGCGACCTCCCACTCTT 60.832 55.000 0.00 0.00 0.00 2.85
1603 2014 7.424803 CCACTCTTTTGATGTTGATTTGTGTA 58.575 34.615 0.00 0.00 0.00 2.90
1629 2040 6.370442 TGTTGTCAGATGTTACTAATTTCCGG 59.630 38.462 0.00 0.00 0.00 5.14
1632 2043 6.938030 TGTCAGATGTTACTAATTTCCGGTTT 59.062 34.615 0.00 0.00 0.00 3.27
1694 2105 2.093181 TGTGTGTTGGCTTCAGTGTACT 60.093 45.455 0.00 0.00 0.00 2.73
1846 2310 1.399791 GGGAAGCAGCTGATTTTCGAG 59.600 52.381 19.75 0.00 0.00 4.04
1852 2316 4.764172 AGCAGCTGATTTTCGAGAATAGT 58.236 39.130 20.43 0.00 0.00 2.12
1857 2321 7.301054 CAGCTGATTTTCGAGAATAGTTGTTT 58.699 34.615 8.42 0.00 0.00 2.83
1861 2325 7.735500 TGATTTTCGAGAATAGTTGTTTACCG 58.264 34.615 0.46 0.00 0.00 4.02
1900 2365 9.845740 TTTAATAATTGTGATAAGAGGCAGCTA 57.154 29.630 0.00 0.00 0.00 3.32
1991 2464 6.238593 GCCGATTTCTTTTGCTGAAGATAGAT 60.239 38.462 3.70 0.57 35.70 1.98
1992 2465 7.041780 GCCGATTTCTTTTGCTGAAGATAGATA 60.042 37.037 3.70 0.00 35.70 1.98
1993 2466 8.279103 CCGATTTCTTTTGCTGAAGATAGATAC 58.721 37.037 3.70 0.00 35.70 2.24
1994 2467 8.000991 CGATTTCTTTTGCTGAAGATAGATACG 58.999 37.037 3.70 0.00 35.70 3.06
1995 2468 8.948631 ATTTCTTTTGCTGAAGATAGATACGA 57.051 30.769 0.00 0.00 35.70 3.43
1996 2469 7.993821 TTCTTTTGCTGAAGATAGATACGAG 57.006 36.000 0.00 0.00 35.70 4.18
2106 2616 0.718408 ATTCCCTGCCCCCAAATCTT 59.282 50.000 0.00 0.00 0.00 2.40
2127 2637 0.671781 ATGGTGCTCGCTTCAGTGTC 60.672 55.000 0.00 0.00 0.00 3.67
2165 2676 0.320683 TCCAGAACTCACCATGTGCG 60.321 55.000 0.00 0.00 32.98 5.34
2193 2704 4.015872 TGGGACTCTTGACACCAAATAC 57.984 45.455 0.00 0.00 0.00 1.89
2194 2705 3.392947 TGGGACTCTTGACACCAAATACA 59.607 43.478 0.00 0.00 0.00 2.29
2195 2706 4.141367 TGGGACTCTTGACACCAAATACAA 60.141 41.667 0.00 0.00 0.00 2.41
2196 2707 4.825085 GGGACTCTTGACACCAAATACAAA 59.175 41.667 0.00 0.00 0.00 2.83
2207 2718 6.581712 ACACCAAATACAAAAACTTGCTGAT 58.418 32.000 0.00 0.00 0.00 2.90
2227 2738 6.621380 GCTGATCTGAACATTCGAATTGTGAA 60.621 38.462 8.21 2.55 0.00 3.18
2247 2758 3.561429 CGGCGAGCTGCTGTTTTA 58.439 55.556 7.01 0.00 45.38 1.52
2253 2764 4.025229 CGGCGAGCTGCTGTTTTATTATTA 60.025 41.667 7.01 0.00 45.38 0.98
2254 2765 5.334105 CGGCGAGCTGCTGTTTTATTATTAT 60.334 40.000 7.01 0.00 45.38 1.28
2255 2766 6.438763 GGCGAGCTGCTGTTTTATTATTATT 58.561 36.000 7.01 0.00 45.43 1.40
2256 2767 7.570507 CGGCGAGCTGCTGTTTTATTATTATTA 60.571 37.037 7.01 0.00 45.38 0.98
2308 2827 4.408993 TGCGTCTTTCTGATTTGTGATG 57.591 40.909 0.00 0.00 0.00 3.07
2346 2870 1.134401 TCGGCTGAACATGGATTCTCC 60.134 52.381 0.00 0.00 36.96 3.71
2448 2972 6.753279 TGAAGCAACTGATTTCTTTGTCAAAG 59.247 34.615 17.73 17.73 39.88 2.77
2453 2977 7.169645 GCAACTGATTTCTTTGTCAAAGCATAA 59.830 33.333 18.80 13.00 38.39 1.90
2454 2978 9.199982 CAACTGATTTCTTTGTCAAAGCATAAT 57.800 29.630 18.80 16.31 38.39 1.28
2455 2979 9.768662 AACTGATTTCTTTGTCAAAGCATAATT 57.231 25.926 18.80 6.44 38.39 1.40
2546 3072 2.691011 GGTGTCTGGGTTTGCTTTACAA 59.309 45.455 0.00 0.00 36.13 2.41
2550 3076 5.240844 GTGTCTGGGTTTGCTTTACAACTAT 59.759 40.000 0.00 0.00 38.23 2.12
2558 3084 7.415206 GGGTTTGCTTTACAACTATCCATGTAG 60.415 40.741 0.00 0.00 38.23 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.399013 GTTGTGTGTATGGCTAAACAATCC 58.601 41.667 0.00 0.00 30.96 3.01
1 2 5.086058 CGTTGTGTGTATGGCTAAACAATC 58.914 41.667 0.00 0.00 30.96 2.67
2 3 4.757657 TCGTTGTGTGTATGGCTAAACAAT 59.242 37.500 0.00 0.00 30.96 2.71
3 4 4.127907 TCGTTGTGTGTATGGCTAAACAA 58.872 39.130 0.00 0.00 26.69 2.83
4 5 3.729966 TCGTTGTGTGTATGGCTAAACA 58.270 40.909 0.00 0.00 0.00 2.83
5 6 4.735662 TTCGTTGTGTGTATGGCTAAAC 57.264 40.909 0.00 0.00 0.00 2.01
6 7 4.998033 TGATTCGTTGTGTGTATGGCTAAA 59.002 37.500 0.00 0.00 0.00 1.85
7 8 4.570930 TGATTCGTTGTGTGTATGGCTAA 58.429 39.130 0.00 0.00 0.00 3.09
8 9 4.195225 TGATTCGTTGTGTGTATGGCTA 57.805 40.909 0.00 0.00 0.00 3.93
9 10 3.052455 TGATTCGTTGTGTGTATGGCT 57.948 42.857 0.00 0.00 0.00 4.75
10 11 3.488489 GTTGATTCGTTGTGTGTATGGC 58.512 45.455 0.00 0.00 0.00 4.40
11 12 3.430556 TCGTTGATTCGTTGTGTGTATGG 59.569 43.478 0.00 0.00 0.00 2.74
12 13 4.639189 TCGTTGATTCGTTGTGTGTATG 57.361 40.909 0.00 0.00 0.00 2.39
13 14 5.407084 TGATTCGTTGATTCGTTGTGTGTAT 59.593 36.000 0.00 0.00 0.00 2.29
14 15 4.745620 TGATTCGTTGATTCGTTGTGTGTA 59.254 37.500 0.00 0.00 0.00 2.90
15 16 3.558006 TGATTCGTTGATTCGTTGTGTGT 59.442 39.130 0.00 0.00 0.00 3.72
16 17 4.127233 TGATTCGTTGATTCGTTGTGTG 57.873 40.909 0.00 0.00 0.00 3.82
17 18 4.272504 AGTTGATTCGTTGATTCGTTGTGT 59.727 37.500 0.00 0.00 0.00 3.72
18 19 4.772434 AGTTGATTCGTTGATTCGTTGTG 58.228 39.130 0.00 0.00 0.00 3.33
19 20 4.750098 AGAGTTGATTCGTTGATTCGTTGT 59.250 37.500 0.00 0.00 0.00 3.32
20 21 5.107491 TGAGAGTTGATTCGTTGATTCGTTG 60.107 40.000 0.00 0.00 0.00 4.10
21 22 4.988540 TGAGAGTTGATTCGTTGATTCGTT 59.011 37.500 0.00 0.00 0.00 3.85
22 23 4.386049 GTGAGAGTTGATTCGTTGATTCGT 59.614 41.667 0.00 0.00 0.00 3.85
23 24 4.201628 GGTGAGAGTTGATTCGTTGATTCG 60.202 45.833 0.00 0.00 0.00 3.34
24 25 4.932200 AGGTGAGAGTTGATTCGTTGATTC 59.068 41.667 0.00 0.00 0.00 2.52
25 26 4.692625 CAGGTGAGAGTTGATTCGTTGATT 59.307 41.667 0.00 0.00 0.00 2.57
26 27 4.248859 CAGGTGAGAGTTGATTCGTTGAT 58.751 43.478 0.00 0.00 0.00 2.57
27 28 3.554960 CCAGGTGAGAGTTGATTCGTTGA 60.555 47.826 0.00 0.00 0.00 3.18
28 29 2.738846 CCAGGTGAGAGTTGATTCGTTG 59.261 50.000 0.00 0.00 0.00 4.10
29 30 2.872038 GCCAGGTGAGAGTTGATTCGTT 60.872 50.000 0.00 0.00 0.00 3.85
30 31 1.338200 GCCAGGTGAGAGTTGATTCGT 60.338 52.381 0.00 0.00 0.00 3.85
31 32 1.066573 AGCCAGGTGAGAGTTGATTCG 60.067 52.381 0.00 0.00 0.00 3.34
32 33 2.777832 AGCCAGGTGAGAGTTGATTC 57.222 50.000 0.00 0.00 0.00 2.52
33 34 2.093235 GCTAGCCAGGTGAGAGTTGATT 60.093 50.000 2.29 0.00 0.00 2.57
34 35 1.484240 GCTAGCCAGGTGAGAGTTGAT 59.516 52.381 2.29 0.00 0.00 2.57
35 36 0.898320 GCTAGCCAGGTGAGAGTTGA 59.102 55.000 2.29 0.00 0.00 3.18
36 37 0.901124 AGCTAGCCAGGTGAGAGTTG 59.099 55.000 12.13 0.00 0.00 3.16
37 38 2.534042 TAGCTAGCCAGGTGAGAGTT 57.466 50.000 12.13 0.00 33.61 3.01
38 39 2.534042 TTAGCTAGCCAGGTGAGAGT 57.466 50.000 12.13 0.00 33.61 3.24
39 40 3.895232 TTTTAGCTAGCCAGGTGAGAG 57.105 47.619 12.13 0.00 33.61 3.20
60 61 9.860650 TCTGTTGCCCATATACTTATTTACATT 57.139 29.630 0.00 0.00 0.00 2.71
65 66 7.611855 GCCTATCTGTTGCCCATATACTTATTT 59.388 37.037 0.00 0.00 0.00 1.40
66 67 7.112779 GCCTATCTGTTGCCCATATACTTATT 58.887 38.462 0.00 0.00 0.00 1.40
67 68 6.215431 TGCCTATCTGTTGCCCATATACTTAT 59.785 38.462 0.00 0.00 0.00 1.73
68 69 5.546110 TGCCTATCTGTTGCCCATATACTTA 59.454 40.000 0.00 0.00 0.00 2.24
69 70 4.350816 TGCCTATCTGTTGCCCATATACTT 59.649 41.667 0.00 0.00 0.00 2.24
70 71 3.909995 TGCCTATCTGTTGCCCATATACT 59.090 43.478 0.00 0.00 0.00 2.12
71 72 4.286297 TGCCTATCTGTTGCCCATATAC 57.714 45.455 0.00 0.00 0.00 1.47
72 73 4.991789 TTGCCTATCTGTTGCCCATATA 57.008 40.909 0.00 0.00 0.00 0.86
73 74 3.882102 TTGCCTATCTGTTGCCCATAT 57.118 42.857 0.00 0.00 0.00 1.78
74 75 3.660970 TTTGCCTATCTGTTGCCCATA 57.339 42.857 0.00 0.00 0.00 2.74
75 76 2.530460 TTTGCCTATCTGTTGCCCAT 57.470 45.000 0.00 0.00 0.00 4.00
76 77 2.530460 ATTTGCCTATCTGTTGCCCA 57.470 45.000 0.00 0.00 0.00 5.36
77 78 3.954258 ACTAATTTGCCTATCTGTTGCCC 59.046 43.478 0.00 0.00 0.00 5.36
78 79 4.640201 TCACTAATTTGCCTATCTGTTGCC 59.360 41.667 0.00 0.00 0.00 4.52
79 80 5.355350 ACTCACTAATTTGCCTATCTGTTGC 59.645 40.000 0.00 0.00 0.00 4.17
80 81 6.992063 ACTCACTAATTTGCCTATCTGTTG 57.008 37.500 0.00 0.00 0.00 3.33
81 82 8.299570 CAAAACTCACTAATTTGCCTATCTGTT 58.700 33.333 0.00 0.00 0.00 3.16
82 83 7.820648 CAAAACTCACTAATTTGCCTATCTGT 58.179 34.615 0.00 0.00 0.00 3.41
95 96 9.708481 TGCAAAGCAATGAGCAAAACTCACTAA 62.708 37.037 0.00 0.00 45.93 2.24
96 97 8.342470 TGCAAAGCAATGAGCAAAACTCACTA 62.342 38.462 0.00 0.00 45.93 2.74
97 98 7.634321 TGCAAAGCAATGAGCAAAACTCACT 62.634 40.000 0.00 0.00 45.93 3.41
98 99 5.498914 TGCAAAGCAATGAGCAAAACTCAC 61.499 41.667 0.00 0.00 45.93 3.51
99 100 3.430513 TGCAAAGCAATGAGCAAAACTCA 60.431 39.130 0.00 0.00 46.65 3.41
107 108 2.649331 AGTCATGCAAAGCAATGAGC 57.351 45.000 0.00 0.00 43.62 4.26
108 109 3.486375 CGGTAGTCATGCAAAGCAATGAG 60.486 47.826 0.00 0.00 43.62 2.90
109 110 2.419673 CGGTAGTCATGCAAAGCAATGA 59.580 45.455 0.00 0.00 43.62 2.57
110 111 2.478370 CCGGTAGTCATGCAAAGCAATG 60.478 50.000 0.00 0.00 43.62 2.82
111 112 1.745087 CCGGTAGTCATGCAAAGCAAT 59.255 47.619 0.00 0.00 43.62 3.56
112 113 1.164411 CCGGTAGTCATGCAAAGCAA 58.836 50.000 0.00 0.00 43.62 3.91
113 114 0.036164 ACCGGTAGTCATGCAAAGCA 59.964 50.000 4.49 0.00 44.86 3.91
114 115 0.447801 CACCGGTAGTCATGCAAAGC 59.552 55.000 6.87 0.00 0.00 3.51
115 116 1.732259 GACACCGGTAGTCATGCAAAG 59.268 52.381 23.72 5.63 36.06 2.77
116 117 1.070914 TGACACCGGTAGTCATGCAAA 59.929 47.619 26.04 10.50 40.80 3.68
117 118 0.682292 TGACACCGGTAGTCATGCAA 59.318 50.000 26.04 11.04 40.80 4.08
118 119 0.037697 GTGACACCGGTAGTCATGCA 60.038 55.000 29.72 14.17 46.52 3.96
119 120 0.037697 TGTGACACCGGTAGTCATGC 60.038 55.000 29.72 22.07 46.52 4.06
120 121 2.672874 CAATGTGACACCGGTAGTCATG 59.327 50.000 29.72 23.15 46.52 3.07
121 122 2.935238 GCAATGTGACACCGGTAGTCAT 60.935 50.000 29.72 19.51 46.52 3.06
122 123 1.606994 GCAATGTGACACCGGTAGTCA 60.607 52.381 26.04 26.04 43.23 3.41
123 124 1.076332 GCAATGTGACACCGGTAGTC 58.924 55.000 22.58 22.58 36.55 2.59
124 125 0.669318 CGCAATGTGACACCGGTAGT 60.669 55.000 6.87 8.26 0.00 2.73
125 126 1.358725 CCGCAATGTGACACCGGTAG 61.359 60.000 6.87 4.38 34.56 3.18
126 127 1.374885 CCGCAATGTGACACCGGTA 60.375 57.895 6.87 0.00 34.56 4.02
127 128 2.668212 CCGCAATGTGACACCGGT 60.668 61.111 0.00 0.00 34.56 5.28
128 129 3.430862 CCCGCAATGTGACACCGG 61.431 66.667 12.46 12.46 38.71 5.28
129 130 2.358125 TCCCGCAATGTGACACCG 60.358 61.111 2.45 0.00 0.00 4.94
130 131 1.599518 TGTCCCGCAATGTGACACC 60.600 57.895 2.45 0.00 34.28 4.16
131 132 4.057224 TGTCCCGCAATGTGACAC 57.943 55.556 0.00 0.00 34.28 3.67
132 133 1.958715 CGTGTCCCGCAATGTGACA 60.959 57.895 0.00 0.00 36.71 3.58
133 134 2.677003 CCGTGTCCCGCAATGTGAC 61.677 63.158 0.00 0.00 34.38 3.67
134 135 2.358125 CCGTGTCCCGCAATGTGA 60.358 61.111 0.00 0.00 34.38 3.58
135 136 2.358125 TCCGTGTCCCGCAATGTG 60.358 61.111 0.00 0.00 34.38 3.21
136 137 2.047274 CTCCGTGTCCCGCAATGT 60.047 61.111 0.00 0.00 34.38 2.71
137 138 1.234615 AAACTCCGTGTCCCGCAATG 61.235 55.000 0.00 0.00 34.38 2.82
138 139 0.536460 AAAACTCCGTGTCCCGCAAT 60.536 50.000 0.00 0.00 34.38 3.56
139 140 1.153127 AAAACTCCGTGTCCCGCAA 60.153 52.632 0.00 0.00 34.38 4.85
140 141 1.890041 CAAAACTCCGTGTCCCGCA 60.890 57.895 0.00 0.00 34.38 5.69
141 142 2.943653 CAAAACTCCGTGTCCCGC 59.056 61.111 0.00 0.00 34.38 6.13
142 143 2.613506 GGCAAAACTCCGTGTCCCG 61.614 63.158 0.00 0.00 0.00 5.14
143 144 1.228154 AGGCAAAACTCCGTGTCCC 60.228 57.895 0.00 0.00 0.00 4.46
144 145 1.235281 GGAGGCAAAACTCCGTGTCC 61.235 60.000 0.00 0.00 46.81 4.02
145 146 2.244946 GGAGGCAAAACTCCGTGTC 58.755 57.895 0.00 0.00 46.81 3.67
146 147 4.475527 GGAGGCAAAACTCCGTGT 57.524 55.556 0.00 0.00 46.81 4.49
151 152 2.152016 GTGTACAGGGAGGCAAAACTC 58.848 52.381 0.00 0.00 36.76 3.01
152 153 1.493022 TGTGTACAGGGAGGCAAAACT 59.507 47.619 0.00 0.00 0.00 2.66
153 154 1.975660 TGTGTACAGGGAGGCAAAAC 58.024 50.000 0.00 0.00 0.00 2.43
154 155 2.513753 CATGTGTACAGGGAGGCAAAA 58.486 47.619 0.00 0.00 0.00 2.44
155 156 1.886222 GCATGTGTACAGGGAGGCAAA 60.886 52.381 0.00 0.00 0.00 3.68
156 157 0.322456 GCATGTGTACAGGGAGGCAA 60.322 55.000 0.00 0.00 0.00 4.52
157 158 1.299648 GCATGTGTACAGGGAGGCA 59.700 57.895 0.00 0.00 0.00 4.75
158 159 1.026718 GTGCATGTGTACAGGGAGGC 61.027 60.000 0.00 0.00 0.00 4.70
159 160 0.392998 GGTGCATGTGTACAGGGAGG 60.393 60.000 0.00 0.00 32.02 4.30
160 161 0.392998 GGGTGCATGTGTACAGGGAG 60.393 60.000 0.00 0.00 32.02 4.30
161 162 1.130678 TGGGTGCATGTGTACAGGGA 61.131 55.000 0.00 0.00 32.02 4.20
162 163 0.960364 GTGGGTGCATGTGTACAGGG 60.960 60.000 0.00 0.00 32.02 4.45
163 164 1.298157 CGTGGGTGCATGTGTACAGG 61.298 60.000 0.00 0.00 32.02 4.00
164 165 0.602638 ACGTGGGTGCATGTGTACAG 60.603 55.000 0.00 0.00 32.02 2.74
165 166 0.882484 CACGTGGGTGCATGTGTACA 60.882 55.000 7.95 0.00 37.35 2.90
166 167 0.601576 TCACGTGGGTGCATGTGTAC 60.602 55.000 17.00 0.00 44.03 2.90
167 168 0.106894 TTCACGTGGGTGCATGTGTA 59.893 50.000 17.00 0.00 44.03 2.90
168 169 1.153066 TTCACGTGGGTGCATGTGT 60.153 52.632 17.00 0.00 44.03 3.72
169 170 1.282570 GTTCACGTGGGTGCATGTG 59.717 57.895 17.00 0.00 44.03 3.21
170 171 1.153066 TGTTCACGTGGGTGCATGT 60.153 52.632 17.00 0.00 44.03 3.21
171 172 1.165907 ACTGTTCACGTGGGTGCATG 61.166 55.000 17.00 2.77 44.03 4.06
172 173 0.394938 TACTGTTCACGTGGGTGCAT 59.605 50.000 17.00 0.02 44.03 3.96
173 174 0.178301 TTACTGTTCACGTGGGTGCA 59.822 50.000 17.00 8.67 44.03 4.57
174 175 0.865769 CTTACTGTTCACGTGGGTGC 59.134 55.000 17.00 4.28 44.03 5.01
175 176 2.132762 GTCTTACTGTTCACGTGGGTG 58.867 52.381 17.00 6.47 45.78 4.61
176 177 1.758280 TGTCTTACTGTTCACGTGGGT 59.242 47.619 17.00 11.87 0.00 4.51
177 178 2.519377 TGTCTTACTGTTCACGTGGG 57.481 50.000 17.00 6.46 0.00 4.61
178 179 4.868450 TTTTGTCTTACTGTTCACGTGG 57.132 40.909 17.00 1.33 0.00 4.94
179 180 6.102006 TCTTTTTGTCTTACTGTTCACGTG 57.898 37.500 9.94 9.94 0.00 4.49
180 181 6.537301 TCATCTTTTTGTCTTACTGTTCACGT 59.463 34.615 0.00 0.00 0.00 4.49
181 182 6.943981 TCATCTTTTTGTCTTACTGTTCACG 58.056 36.000 0.00 0.00 0.00 4.35
182 183 8.345565 ACATCATCTTTTTGTCTTACTGTTCAC 58.654 33.333 0.00 0.00 0.00 3.18
183 184 8.450578 ACATCATCTTTTTGTCTTACTGTTCA 57.549 30.769 0.00 0.00 0.00 3.18
184 185 9.736023 AAACATCATCTTTTTGTCTTACTGTTC 57.264 29.630 0.00 0.00 0.00 3.18
186 187 9.736023 GAAAACATCATCTTTTTGTCTTACTGT 57.264 29.630 0.00 0.00 0.00 3.55
187 188 9.734620 TGAAAACATCATCTTTTTGTCTTACTG 57.265 29.630 0.00 0.00 31.50 2.74
195 196 9.801714 GCAGTATTTGAAAACATCATCTTTTTG 57.198 29.630 0.00 0.00 38.03 2.44
196 197 8.992073 GGCAGTATTTGAAAACATCATCTTTTT 58.008 29.630 0.00 0.00 38.03 1.94
197 198 7.329226 CGGCAGTATTTGAAAACATCATCTTTT 59.671 33.333 0.00 0.00 38.03 2.27
198 199 6.808212 CGGCAGTATTTGAAAACATCATCTTT 59.192 34.615 0.00 0.00 38.03 2.52
199 200 6.324819 CGGCAGTATTTGAAAACATCATCTT 58.675 36.000 0.00 0.00 38.03 2.40
200 201 5.677091 GCGGCAGTATTTGAAAACATCATCT 60.677 40.000 0.00 0.00 38.03 2.90
201 202 4.500477 GCGGCAGTATTTGAAAACATCATC 59.500 41.667 0.00 0.00 38.03 2.92
202 203 4.423732 GCGGCAGTATTTGAAAACATCAT 58.576 39.130 0.00 0.00 38.03 2.45
203 204 3.669290 CGCGGCAGTATTTGAAAACATCA 60.669 43.478 0.00 0.00 35.85 3.07
204 205 2.845967 CGCGGCAGTATTTGAAAACATC 59.154 45.455 0.00 0.00 0.00 3.06
205 206 2.227865 ACGCGGCAGTATTTGAAAACAT 59.772 40.909 12.47 0.00 0.00 2.71
206 207 1.604755 ACGCGGCAGTATTTGAAAACA 59.395 42.857 12.47 0.00 0.00 2.83
207 208 2.325509 ACGCGGCAGTATTTGAAAAC 57.674 45.000 12.47 0.00 0.00 2.43
208 209 2.605823 CCAACGCGGCAGTATTTGAAAA 60.606 45.455 12.47 0.00 0.00 2.29
209 210 1.068885 CCAACGCGGCAGTATTTGAAA 60.069 47.619 12.47 0.00 0.00 2.69
210 211 0.519519 CCAACGCGGCAGTATTTGAA 59.480 50.000 12.47 0.00 0.00 2.69
211 212 0.604243 ACCAACGCGGCAGTATTTGA 60.604 50.000 12.47 0.00 39.03 2.69
212 213 0.239879 AACCAACGCGGCAGTATTTG 59.760 50.000 12.47 3.45 39.03 2.32
213 214 0.519961 GAACCAACGCGGCAGTATTT 59.480 50.000 12.47 0.00 39.03 1.40
214 215 0.321298 AGAACCAACGCGGCAGTATT 60.321 50.000 12.47 0.00 39.03 1.89
215 216 0.739813 GAGAACCAACGCGGCAGTAT 60.740 55.000 12.47 0.00 39.03 2.12
216 217 1.373748 GAGAACCAACGCGGCAGTA 60.374 57.895 12.47 0.00 39.03 2.74
217 218 2.665185 GAGAACCAACGCGGCAGT 60.665 61.111 12.47 0.21 39.03 4.40
218 219 3.777925 CGAGAACCAACGCGGCAG 61.778 66.667 12.47 0.00 39.03 4.85
224 225 1.557443 GACCAGTGCGAGAACCAACG 61.557 60.000 0.00 0.00 0.00 4.10
225 226 0.249911 AGACCAGTGCGAGAACCAAC 60.250 55.000 0.00 0.00 0.00 3.77
226 227 0.033504 GAGACCAGTGCGAGAACCAA 59.966 55.000 0.00 0.00 0.00 3.67
227 228 1.666011 GAGACCAGTGCGAGAACCA 59.334 57.895 0.00 0.00 0.00 3.67
228 229 1.079750 GGAGACCAGTGCGAGAACC 60.080 63.158 0.00 0.00 0.00 3.62
229 230 0.247736 ATGGAGACCAGTGCGAGAAC 59.752 55.000 0.00 0.00 36.75 3.01
230 231 0.976641 AATGGAGACCAGTGCGAGAA 59.023 50.000 0.00 0.00 36.75 2.87
231 232 0.247460 CAATGGAGACCAGTGCGAGA 59.753 55.000 5.36 0.00 42.54 4.04
232 233 2.759783 CAATGGAGACCAGTGCGAG 58.240 57.895 5.36 0.00 42.54 5.03
237 238 0.037303 CTGTGGCAATGGAGACCAGT 59.963 55.000 0.00 0.00 36.75 4.00
238 239 1.310933 GCTGTGGCAATGGAGACCAG 61.311 60.000 0.00 0.00 36.13 4.00
239 240 1.303561 GCTGTGGCAATGGAGACCA 60.304 57.895 0.00 0.00 36.76 4.02
240 241 2.048603 GGCTGTGGCAATGGAGACC 61.049 63.158 0.00 0.00 40.87 3.85
241 242 2.048603 GGGCTGTGGCAATGGAGAC 61.049 63.158 0.00 0.00 40.87 3.36
242 243 2.202236 GAGGGCTGTGGCAATGGAGA 62.202 60.000 0.00 0.00 40.87 3.71
243 244 1.751927 GAGGGCTGTGGCAATGGAG 60.752 63.158 0.00 0.00 40.87 3.86
244 245 1.792757 AAGAGGGCTGTGGCAATGGA 61.793 55.000 0.00 0.00 40.87 3.41
274 275 0.895559 CAACTTGGACTTCTGGGCCC 60.896 60.000 17.59 17.59 44.39 5.80
276 277 1.856265 CGCAACTTGGACTTCTGGGC 61.856 60.000 0.00 0.00 0.00 5.36
489 491 7.091443 TGTGTTTGTTAAATCGGTTTTCACTT 58.909 30.769 0.00 0.00 0.00 3.16
601 603 6.426937 GCCAACACTGAACACTCTCTTTAATA 59.573 38.462 0.00 0.00 0.00 0.98
648 664 1.483316 CGACAGCTTTCACGTGTGTA 58.517 50.000 16.51 0.00 0.00 2.90
650 666 1.564622 CCGACAGCTTTCACGTGTG 59.435 57.895 16.51 8.54 0.00 3.82
652 668 2.551270 GCCGACAGCTTTCACGTG 59.449 61.111 9.94 9.94 38.99 4.49
653 669 3.036084 CGCCGACAGCTTTCACGT 61.036 61.111 0.02 0.00 40.39 4.49
655 671 4.090057 GCCGCCGACAGCTTTCAC 62.090 66.667 0.02 0.00 40.39 3.18
656 672 3.825160 AAGCCGCCGACAGCTTTCA 62.825 57.895 0.02 0.00 46.99 2.69
657 673 3.050275 AAGCCGCCGACAGCTTTC 61.050 61.111 0.00 0.00 46.99 2.62
658 674 3.357079 CAAGCCGCCGACAGCTTT 61.357 61.111 0.00 0.00 46.99 3.51
660 676 4.749310 CTCAAGCCGCCGACAGCT 62.749 66.667 0.00 0.00 42.40 4.24
676 692 2.771763 CTTCGAGCCCGTTGACAGCT 62.772 60.000 0.00 0.00 40.24 4.24
678 694 2.383527 GCTTCGAGCCCGTTGACAG 61.384 63.158 0.00 0.00 34.48 3.51
679 695 2.357034 GCTTCGAGCCCGTTGACA 60.357 61.111 0.00 0.00 34.48 3.58
680 696 2.048127 AGCTTCGAGCCCGTTGAC 60.048 61.111 3.66 0.00 43.77 3.18
681 697 2.048222 CAGCTTCGAGCCCGTTGA 60.048 61.111 3.66 0.00 43.77 3.18
682 698 3.793144 GCAGCTTCGAGCCCGTTG 61.793 66.667 3.66 0.00 43.77 4.10
683 699 3.941657 GAGCAGCTTCGAGCCCGTT 62.942 63.158 0.00 0.00 43.77 4.44
684 700 4.443266 GAGCAGCTTCGAGCCCGT 62.443 66.667 0.00 0.00 43.77 5.28
687 703 3.612247 TTGGGAGCAGCTTCGAGCC 62.612 63.158 0.00 0.00 43.77 4.70
690 706 2.665000 CCTTGGGAGCAGCTTCGA 59.335 61.111 0.00 0.00 0.00 3.71
717 733 1.209128 CCATCCGCATTCGTCACTAC 58.791 55.000 0.00 0.00 0.00 2.73
719 735 0.460284 GACCATCCGCATTCGTCACT 60.460 55.000 0.00 0.00 0.00 3.41
722 738 1.202371 TGTAGACCATCCGCATTCGTC 60.202 52.381 0.00 0.00 0.00 4.20
736 752 7.787832 GCAAATTCTGTGCAGTCGTGTAGAC 62.788 48.000 0.00 0.00 41.80 2.59
737 753 3.660501 AATTCTGTGCAGTCGTGTAGA 57.339 42.857 0.00 0.00 0.00 2.59
738 754 3.665323 GCAAATTCTGTGCAGTCGTGTAG 60.665 47.826 0.00 0.00 41.80 2.74
739 755 2.223144 GCAAATTCTGTGCAGTCGTGTA 59.777 45.455 0.00 0.00 41.80 2.90
740 756 1.002468 GCAAATTCTGTGCAGTCGTGT 60.002 47.619 0.00 0.00 41.80 4.49
741 757 1.265095 AGCAAATTCTGTGCAGTCGTG 59.735 47.619 3.58 0.00 44.74 4.35
742 758 1.532868 GAGCAAATTCTGTGCAGTCGT 59.467 47.619 3.58 0.00 44.74 4.34
743 759 1.532437 TGAGCAAATTCTGTGCAGTCG 59.468 47.619 3.58 0.00 44.74 4.18
744 760 3.631145 TTGAGCAAATTCTGTGCAGTC 57.369 42.857 3.58 0.00 44.74 3.51
745 761 4.389890 TTTTGAGCAAATTCTGTGCAGT 57.610 36.364 3.58 0.00 44.74 4.40
767 783 5.705905 GGGCTTCTGTGTAGACTGTATTTTT 59.294 40.000 0.00 0.00 31.21 1.94
768 784 5.246307 GGGCTTCTGTGTAGACTGTATTTT 58.754 41.667 0.00 0.00 31.21 1.82
769 785 4.620803 CGGGCTTCTGTGTAGACTGTATTT 60.621 45.833 0.00 0.00 31.21 1.40
770 786 3.119101 CGGGCTTCTGTGTAGACTGTATT 60.119 47.826 0.00 0.00 31.21 1.89
771 787 2.427453 CGGGCTTCTGTGTAGACTGTAT 59.573 50.000 0.00 0.00 31.21 2.29
772 788 1.816835 CGGGCTTCTGTGTAGACTGTA 59.183 52.381 0.00 0.00 31.21 2.74
773 789 0.603569 CGGGCTTCTGTGTAGACTGT 59.396 55.000 0.00 0.00 31.21 3.55
774 790 0.888619 TCGGGCTTCTGTGTAGACTG 59.111 55.000 0.00 0.00 31.21 3.51
775 791 1.546476 CTTCGGGCTTCTGTGTAGACT 59.454 52.381 0.00 0.00 31.21 3.24
776 792 1.404315 CCTTCGGGCTTCTGTGTAGAC 60.404 57.143 0.00 0.00 31.21 2.59
777 793 0.895530 CCTTCGGGCTTCTGTGTAGA 59.104 55.000 0.00 0.00 0.00 2.59
778 794 3.442996 CCTTCGGGCTTCTGTGTAG 57.557 57.895 0.00 0.00 0.00 2.74
789 805 2.202892 GTAGCTTCGGCCTTCGGG 60.203 66.667 0.00 0.00 43.01 5.14
790 806 1.227002 GAGTAGCTTCGGCCTTCGG 60.227 63.158 0.00 0.00 43.01 4.30
791 807 1.227002 GGAGTAGCTTCGGCCTTCG 60.227 63.158 0.00 0.00 43.01 3.79
792 808 1.144276 GGGAGTAGCTTCGGCCTTC 59.856 63.158 0.00 0.00 43.01 3.46
793 809 1.306226 AGGGAGTAGCTTCGGCCTT 60.306 57.895 0.00 0.00 43.01 4.35
794 810 1.758906 GAGGGAGTAGCTTCGGCCT 60.759 63.158 0.00 0.00 43.01 5.19
795 811 2.798364 GGAGGGAGTAGCTTCGGCC 61.798 68.421 0.00 0.00 43.01 6.13
796 812 2.022240 CTGGAGGGAGTAGCTTCGGC 62.022 65.000 0.00 0.00 42.17 5.54
797 813 0.684805 ACTGGAGGGAGTAGCTTCGG 60.685 60.000 0.00 0.00 0.00 4.30
798 814 1.677052 GTACTGGAGGGAGTAGCTTCG 59.323 57.143 0.00 0.00 0.00 3.79
799 815 2.736347 TGTACTGGAGGGAGTAGCTTC 58.264 52.381 0.00 0.00 0.00 3.86
800 816 2.921834 TGTACTGGAGGGAGTAGCTT 57.078 50.000 0.00 0.00 0.00 3.74
801 817 2.425102 GGATGTACTGGAGGGAGTAGCT 60.425 54.545 0.00 0.00 0.00 3.32
802 818 1.964933 GGATGTACTGGAGGGAGTAGC 59.035 57.143 0.00 0.00 0.00 3.58
803 819 2.599677 GGGATGTACTGGAGGGAGTAG 58.400 57.143 0.00 0.00 0.00 2.57
804 820 1.133575 CGGGATGTACTGGAGGGAGTA 60.134 57.143 0.00 0.00 0.00 2.59
805 821 0.397254 CGGGATGTACTGGAGGGAGT 60.397 60.000 0.00 0.00 0.00 3.85
889 923 1.155155 GCTGGGAGTGGGGGAAAAA 59.845 57.895 0.00 0.00 0.00 1.94
982 1017 1.530655 GGCGTGGGGGATTTATGGG 60.531 63.158 0.00 0.00 0.00 4.00
1032 1071 2.280797 GTTGCTGCTGGTGGTCGA 60.281 61.111 0.00 0.00 0.00 4.20
1054 1136 2.669569 CTTGGCCTCGGTGTGGTG 60.670 66.667 3.32 0.00 0.00 4.17
1055 1137 4.643387 GCTTGGCCTCGGTGTGGT 62.643 66.667 3.32 0.00 0.00 4.16
1062 1167 1.424493 GACATCTTCGCTTGGCCTCG 61.424 60.000 3.32 5.20 0.00 4.63
1064 1169 1.448540 CGACATCTTCGCTTGGCCT 60.449 57.895 3.32 0.00 41.87 5.19
1065 1170 3.093278 CGACATCTTCGCTTGGCC 58.907 61.111 0.00 0.00 41.87 5.36
1435 1585 3.006537 ACGAACACTACACAGCCATTAGT 59.993 43.478 0.00 0.00 0.00 2.24
1438 1588 2.143122 CACGAACACTACACAGCCATT 58.857 47.619 0.00 0.00 0.00 3.16
1456 1611 1.338674 GGCCATTAAACCAAAGCCCAC 60.339 52.381 0.00 0.00 34.85 4.61
1468 1867 3.731136 GCGAGATGCGGCCATTAA 58.269 55.556 2.24 0.00 41.29 1.40
1510 1914 3.244911 ACCCCAGAACTACATCCAAACAG 60.245 47.826 0.00 0.00 0.00 3.16
1531 1941 7.170828 GGTAAACCACTTCAATTTCAATTCCAC 59.829 37.037 0.00 0.00 35.64 4.02
1572 1983 3.425162 ACATCAAAAGAGTGGGAGGTC 57.575 47.619 0.00 0.00 0.00 3.85
1574 1985 3.754965 TCAACATCAAAAGAGTGGGAGG 58.245 45.455 0.00 0.00 0.00 4.30
1578 1989 6.275335 ACACAAATCAACATCAAAAGAGTGG 58.725 36.000 0.00 0.00 0.00 4.00
1585 1996 8.193438 TGACAACATACACAAATCAACATCAAA 58.807 29.630 0.00 0.00 0.00 2.69
1603 2014 7.065803 CCGGAAATTAGTAACATCTGACAACAT 59.934 37.037 0.00 0.00 0.00 2.71
1629 2040 5.847670 AAATTACAGAGCGAGAGACAAAC 57.152 39.130 0.00 0.00 0.00 2.93
1632 2043 5.164233 CAGAAAATTACAGAGCGAGAGACA 58.836 41.667 0.00 0.00 0.00 3.41
1694 2105 4.644234 TGGAGAAGCAAAGTTGAATCAACA 59.356 37.500 25.63 0.08 45.66 3.33
1846 2310 5.581085 AGCATCAGACGGTAAACAACTATTC 59.419 40.000 0.00 0.00 0.00 1.75
1852 2316 4.002906 AGAAGCATCAGACGGTAAACAA 57.997 40.909 0.00 0.00 0.00 2.83
1857 2321 8.958119 ATTATTAAAAGAAGCATCAGACGGTA 57.042 30.769 0.00 0.00 0.00 4.02
1900 2365 6.530019 AATCTATGTTCGGCCAAAGAAATT 57.470 33.333 2.24 0.00 0.00 1.82
1991 2464 2.356069 CTGCACTCAGCTCATACTCGTA 59.644 50.000 0.00 0.00 45.94 3.43
1992 2465 1.133982 CTGCACTCAGCTCATACTCGT 59.866 52.381 0.00 0.00 45.94 4.18
1993 2466 1.403323 TCTGCACTCAGCTCATACTCG 59.597 52.381 0.00 0.00 45.94 4.18
1994 2467 3.731652 ATCTGCACTCAGCTCATACTC 57.268 47.619 0.00 0.00 45.94 2.59
1995 2468 3.450096 TCAATCTGCACTCAGCTCATACT 59.550 43.478 0.00 0.00 45.94 2.12
1996 2469 3.790091 TCAATCTGCACTCAGCTCATAC 58.210 45.455 0.00 0.00 45.94 2.39
2106 2616 1.001974 ACACTGAAGCGAGCACCATTA 59.998 47.619 0.00 0.00 0.00 1.90
2127 2637 3.715628 GATTTGGTTCGAATCCATGGG 57.284 47.619 13.02 0.00 34.75 4.00
2148 2659 0.792640 GTCGCACATGGTGAGTTCTG 59.207 55.000 0.00 0.00 36.51 3.02
2151 2662 2.831685 TTAGTCGCACATGGTGAGTT 57.168 45.000 9.44 0.00 40.17 3.01
2165 2676 4.254492 GGTGTCAAGAGTCCCAATTAGTC 58.746 47.826 0.00 0.00 0.00 2.59
2193 2704 6.129273 CGAATGTTCAGATCAGCAAGTTTTTG 60.129 38.462 0.00 0.00 37.36 2.44
2194 2705 5.916883 CGAATGTTCAGATCAGCAAGTTTTT 59.083 36.000 0.00 0.00 0.00 1.94
2195 2706 5.239306 TCGAATGTTCAGATCAGCAAGTTTT 59.761 36.000 0.00 0.00 0.00 2.43
2196 2707 4.756642 TCGAATGTTCAGATCAGCAAGTTT 59.243 37.500 0.00 0.00 0.00 2.66
2207 2718 5.107491 CGTCTTCACAATTCGAATGTTCAGA 60.107 40.000 12.25 11.39 0.00 3.27
2227 2738 2.996168 AAAACAGCAGCTCGCCGTCT 62.996 55.000 0.00 0.00 44.04 4.18
2255 2766 9.983024 TGGTCAATACTCCCTATTTTCAAAATA 57.017 29.630 2.56 2.56 0.00 1.40
2256 2767 8.893563 TGGTCAATACTCCCTATTTTCAAAAT 57.106 30.769 0.02 0.02 0.00 1.82
2308 2827 1.201855 CGAAGAAATCTGCTGCGTGTC 60.202 52.381 0.00 0.00 0.00 3.67
2346 2870 7.989416 TTTCAAATAGTTGGGTTAGGTAGTG 57.011 36.000 2.65 0.00 35.29 2.74
2419 2943 7.229306 TGACAAAGAAATCAGTTGCTTCATACT 59.771 33.333 0.00 0.00 0.00 2.12
2423 2947 5.833406 TGACAAAGAAATCAGTTGCTTCA 57.167 34.783 0.00 0.00 0.00 3.02
2453 2977 8.945195 TTCCATCTGAATTTGGCTCATATAAT 57.055 30.769 0.00 0.00 32.80 1.28
2454 2978 8.765488 TTTCCATCTGAATTTGGCTCATATAA 57.235 30.769 0.00 0.00 31.67 0.98
2455 2979 8.765488 TTTTCCATCTGAATTTGGCTCATATA 57.235 30.769 0.00 0.00 31.67 0.86
2484 3009 1.077429 GAGGTCCCCCAGTTCATGC 60.077 63.158 0.00 0.00 0.00 4.06
2516 3041 4.269183 CAAACCCAGACACCATATGCTTA 58.731 43.478 0.00 0.00 0.00 3.09
2518 3043 2.726821 CAAACCCAGACACCATATGCT 58.273 47.619 0.00 0.00 0.00 3.79
2521 3046 3.456380 AAGCAAACCCAGACACCATAT 57.544 42.857 0.00 0.00 0.00 1.78
2522 3047 2.969821 AAGCAAACCCAGACACCATA 57.030 45.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.