Multiple sequence alignment - TraesCS6B01G077600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G077600 chr6B 100.000 3563 0 0 1 3563 54089534 54093096 0.000000e+00 6580.0
1 TraesCS6B01G077600 chr6B 98.143 700 8 2 1 695 684471311 684472010 0.000000e+00 1216.0
2 TraesCS6B01G077600 chr6B 90.887 823 72 1 1326 2148 53772922 53773741 0.000000e+00 1101.0
3 TraesCS6B01G077600 chr6B 88.177 812 74 8 2402 3210 53774732 53775524 0.000000e+00 948.0
4 TraesCS6B01G077600 chr6B 85.560 464 52 7 1660 2117 54099008 54099462 4.160000e-129 472.0
5 TraesCS6B01G077600 chr6B 87.603 363 35 3 1796 2148 53640172 53640534 2.560000e-111 412.0
6 TraesCS6B01G077600 chr6B 84.227 317 41 8 1286 1595 54098656 54098970 2.080000e-77 300.0
7 TraesCS6B01G077600 chr6B 82.902 193 30 1 1137 1329 53768031 53768220 1.700000e-38 171.0
8 TraesCS6B01G077600 chr6B 84.043 94 12 3 2413 2503 642350233 642350326 1.760000e-13 87.9
9 TraesCS6B01G077600 chr4A 98.281 698 9 2 1 695 666736054 666736751 0.000000e+00 1219.0
10 TraesCS6B01G077600 chr4A 98.146 701 8 2 1 696 724383430 724382730 0.000000e+00 1218.0
11 TraesCS6B01G077600 chr4A 85.185 108 16 0 2506 2613 95708187 95708080 1.050000e-20 111.0
12 TraesCS6B01G077600 chr3B 98.281 698 9 2 1 695 59983819 59983122 0.000000e+00 1219.0
13 TraesCS6B01G077600 chr3B 98.006 702 9 3 1 697 804493153 804492452 0.000000e+00 1214.0
14 TraesCS6B01G077600 chr3B 98.006 702 9 3 1 697 804516383 804515682 0.000000e+00 1214.0
15 TraesCS6B01G077600 chr3B 97.602 709 11 4 1 704 755683094 755683801 0.000000e+00 1210.0
16 TraesCS6B01G077600 chr3B 97.191 178 4 1 3222 3399 299129107 299128931 2.080000e-77 300.0
17 TraesCS6B01G077600 chr3B 91.358 81 6 1 694 773 711765212 711765132 3.760000e-20 110.0
18 TraesCS6B01G077600 chr3B 92.188 64 5 0 2436 2499 44748771 44748834 1.360000e-14 91.6
19 TraesCS6B01G077600 chr3B 86.905 84 7 4 2426 2506 429973601 429973519 1.360000e-14 91.6
20 TraesCS6B01G077600 chr3B 87.879 66 8 0 2434 2499 44937185 44937120 1.060000e-10 78.7
21 TraesCS6B01G077600 chr7B 98.138 698 11 1 1 696 721934827 721934130 0.000000e+00 1216.0
22 TraesCS6B01G077600 chr7B 77.174 368 50 13 2698 3062 564022172 564022508 2.180000e-42 183.0
23 TraesCS6B01G077600 chr2B 98.138 698 10 2 1 695 25835930 25836627 0.000000e+00 1214.0
24 TraesCS6B01G077600 chrUn 86.707 993 112 11 1127 2117 103416012 103416986 0.000000e+00 1085.0
25 TraesCS6B01G077600 chrUn 90.024 832 77 6 861 1686 103434239 103435070 0.000000e+00 1072.0
26 TraesCS6B01G077600 chrUn 94.075 557 29 2 1684 2240 103450088 103450640 0.000000e+00 843.0
27 TraesCS6B01G077600 chrUn 86.797 765 55 15 2407 3145 103450628 103451372 0.000000e+00 811.0
28 TraesCS6B01G077600 chrUn 94.675 169 5 1 3398 3562 103451474 103451642 3.530000e-65 259.0
29 TraesCS6B01G077600 chrUn 93.750 96 6 0 3132 3227 103451395 103451490 1.030000e-30 145.0
30 TraesCS6B01G077600 chr6A 82.429 700 95 14 1018 1715 29320095 29319422 1.430000e-163 586.0
31 TraesCS6B01G077600 chr6A 84.906 318 41 7 861 1171 29290507 29290190 7.430000e-82 315.0
32 TraesCS6B01G077600 chr6A 97.674 172 4 0 3226 3397 289334269 289334440 2.690000e-76 296.0
33 TraesCS6B01G077600 chr5B 97.674 172 4 0 3226 3397 419852876 419853047 2.690000e-76 296.0
34 TraesCS6B01G077600 chr5B 97.126 174 5 0 3227 3400 654755922 654755749 9.670000e-76 294.0
35 TraesCS6B01G077600 chr5B 95.580 181 7 1 3220 3400 54214055 54213876 4.500000e-74 289.0
36 TraesCS6B01G077600 chr5B 92.893 197 12 2 3228 3422 126245088 126245284 5.820000e-73 285.0
37 TraesCS6B01G077600 chr5B 78.616 159 30 4 1019 1175 635605974 635606130 6.290000e-18 102.0
38 TraesCS6B01G077600 chr5B 93.220 59 4 0 2442 2500 122848920 122848978 1.760000e-13 87.9
39 TraesCS6B01G077600 chr5B 100.000 28 0 0 1305 1332 671359557 671359584 6.000000e-03 52.8
40 TraesCS6B01G077600 chr1B 97.674 172 4 0 3226 3397 225811789 225811960 2.690000e-76 296.0
41 TraesCS6B01G077600 chr4B 97.661 171 4 0 3227 3397 654180190 654180360 9.670000e-76 294.0
42 TraesCS6B01G077600 chr4B 93.846 65 3 1 2442 2506 59598652 59598589 2.930000e-16 97.1
43 TraesCS6B01G077600 chr7A 93.814 194 11 1 3208 3400 535920367 535920174 1.250000e-74 291.0
44 TraesCS6B01G077600 chr7A 82.143 140 21 3 2506 2644 587307212 587307076 2.250000e-22 117.0
45 TraesCS6B01G077600 chr5D 87.603 121 14 1 2506 2625 172295226 172295346 4.800000e-29 139.0
46 TraesCS6B01G077600 chr5D 100.000 29 0 0 1304 1332 505541334 505541362 2.000000e-03 54.7
47 TraesCS6B01G077600 chr3D 83.893 149 21 3 2506 2653 575153297 575153151 4.800000e-29 139.0
48 TraesCS6B01G077600 chr5A 82.119 151 20 5 2506 2653 102933817 102933671 4.830000e-24 122.0
49 TraesCS6B01G077600 chr1A 82.609 138 20 2 2506 2641 311367573 311367708 6.250000e-23 119.0
50 TraesCS6B01G077600 chr6D 91.935 62 5 0 2442 2503 426888356 426888417 1.760000e-13 87.9
51 TraesCS6B01G077600 chr2D 86.842 76 7 3 2426 2500 272387854 272387927 8.200000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G077600 chr6B 54089534 54093096 3562 False 6580.0 6580 100.00000 1 3563 1 chr6B.!!$F3 3562
1 TraesCS6B01G077600 chr6B 684471311 684472010 699 False 1216.0 1216 98.14300 1 695 1 chr6B.!!$F5 694
2 TraesCS6B01G077600 chr6B 53772922 53775524 2602 False 1024.5 1101 89.53200 1326 3210 2 chr6B.!!$F6 1884
3 TraesCS6B01G077600 chr6B 54098656 54099462 806 False 386.0 472 84.89350 1286 2117 2 chr6B.!!$F7 831
4 TraesCS6B01G077600 chr4A 666736054 666736751 697 False 1219.0 1219 98.28100 1 695 1 chr4A.!!$F1 694
5 TraesCS6B01G077600 chr4A 724382730 724383430 700 True 1218.0 1218 98.14600 1 696 1 chr4A.!!$R2 695
6 TraesCS6B01G077600 chr3B 59983122 59983819 697 True 1219.0 1219 98.28100 1 695 1 chr3B.!!$R2 694
7 TraesCS6B01G077600 chr3B 804492452 804493153 701 True 1214.0 1214 98.00600 1 697 1 chr3B.!!$R6 696
8 TraesCS6B01G077600 chr3B 804515682 804516383 701 True 1214.0 1214 98.00600 1 697 1 chr3B.!!$R7 696
9 TraesCS6B01G077600 chr3B 755683094 755683801 707 False 1210.0 1210 97.60200 1 704 1 chr3B.!!$F2 703
10 TraesCS6B01G077600 chr7B 721934130 721934827 697 True 1216.0 1216 98.13800 1 696 1 chr7B.!!$R1 695
11 TraesCS6B01G077600 chr2B 25835930 25836627 697 False 1214.0 1214 98.13800 1 695 1 chr2B.!!$F1 694
12 TraesCS6B01G077600 chrUn 103416012 103416986 974 False 1085.0 1085 86.70700 1127 2117 1 chrUn.!!$F1 990
13 TraesCS6B01G077600 chrUn 103434239 103435070 831 False 1072.0 1072 90.02400 861 1686 1 chrUn.!!$F2 825
14 TraesCS6B01G077600 chrUn 103450088 103451642 1554 False 514.5 843 92.32425 1684 3562 4 chrUn.!!$F3 1878
15 TraesCS6B01G077600 chr6A 29319422 29320095 673 True 586.0 586 82.42900 1018 1715 1 chr6A.!!$R2 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 812 0.611200 TGGACTGGACATACGGGTTG 59.389 55.0 0.00 0.0 0.0 3.77 F
1425 1439 0.384669 GCCCGATAGCTACACGAACT 59.615 55.0 19.27 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2265 2769 0.108281 GGCGAAGTACAGGAGGGTTC 60.108 60.0 0.00 0.0 0.00 3.62 R
3235 4066 0.099436 CTTTATCACTGCGCCAAGGC 59.901 55.0 4.18 0.0 37.85 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 2.162319 GCGAAGGGCAAAAATTGGAA 57.838 45.000 0.00 0.00 42.87 3.53
699 707 8.667076 TTAGGTGTTTTTCTACTAGTGAAACC 57.333 34.615 5.39 10.88 37.80 3.27
700 708 6.896883 AGGTGTTTTTCTACTAGTGAAACCT 58.103 36.000 5.39 12.66 37.80 3.50
701 709 6.990939 AGGTGTTTTTCTACTAGTGAAACCTC 59.009 38.462 5.39 7.53 37.80 3.85
702 710 6.073927 GGTGTTTTTCTACTAGTGAAACCTCG 60.074 42.308 5.39 0.00 37.80 4.63
703 711 6.478016 GTGTTTTTCTACTAGTGAAACCTCGT 59.522 38.462 5.39 0.00 37.80 4.18
704 712 6.477688 TGTTTTTCTACTAGTGAAACCTCGTG 59.522 38.462 5.39 0.00 37.80 4.35
705 713 6.395426 TTTTCTACTAGTGAAACCTCGTGA 57.605 37.500 5.39 0.00 37.80 4.35
706 714 6.585695 TTTCTACTAGTGAAACCTCGTGAT 57.414 37.500 5.39 0.00 37.80 3.06
707 715 6.585695 TTCTACTAGTGAAACCTCGTGATT 57.414 37.500 5.39 0.00 37.80 2.57
708 716 6.585695 TCTACTAGTGAAACCTCGTGATTT 57.414 37.500 5.39 0.00 37.80 2.17
709 717 6.618811 TCTACTAGTGAAACCTCGTGATTTC 58.381 40.000 5.39 0.00 37.80 2.17
710 718 4.566987 ACTAGTGAAACCTCGTGATTTCC 58.433 43.478 1.99 0.00 37.80 3.13
711 719 3.771577 AGTGAAACCTCGTGATTTCCT 57.228 42.857 1.99 0.00 37.80 3.36
712 720 3.403038 AGTGAAACCTCGTGATTTCCTG 58.597 45.455 1.99 0.00 37.80 3.86
713 721 3.071023 AGTGAAACCTCGTGATTTCCTGA 59.929 43.478 1.99 0.00 37.80 3.86
714 722 3.433615 GTGAAACCTCGTGATTTCCTGAG 59.566 47.826 1.99 0.00 34.52 3.35
715 723 3.071023 TGAAACCTCGTGATTTCCTGAGT 59.929 43.478 1.99 0.00 34.52 3.41
716 724 3.320673 AACCTCGTGATTTCCTGAGTC 57.679 47.619 0.00 0.00 0.00 3.36
717 725 1.550976 ACCTCGTGATTTCCTGAGTCC 59.449 52.381 0.00 0.00 0.00 3.85
718 726 1.827969 CCTCGTGATTTCCTGAGTCCT 59.172 52.381 0.00 0.00 0.00 3.85
719 727 2.159170 CCTCGTGATTTCCTGAGTCCTC 60.159 54.545 0.00 0.00 0.00 3.71
720 728 2.757868 CTCGTGATTTCCTGAGTCCTCT 59.242 50.000 0.00 0.00 0.00 3.69
721 729 3.165875 TCGTGATTTCCTGAGTCCTCTT 58.834 45.455 0.00 0.00 0.00 2.85
722 730 4.341487 TCGTGATTTCCTGAGTCCTCTTA 58.659 43.478 0.00 0.00 0.00 2.10
723 731 4.158025 TCGTGATTTCCTGAGTCCTCTTAC 59.842 45.833 0.00 0.00 0.00 2.34
724 732 4.158764 CGTGATTTCCTGAGTCCTCTTACT 59.841 45.833 0.00 0.00 0.00 2.24
725 733 5.415221 GTGATTTCCTGAGTCCTCTTACTG 58.585 45.833 0.00 0.00 0.00 2.74
726 734 5.046950 GTGATTTCCTGAGTCCTCTTACTGT 60.047 44.000 0.00 0.00 0.00 3.55
727 735 6.153000 GTGATTTCCTGAGTCCTCTTACTGTA 59.847 42.308 0.00 0.00 0.00 2.74
728 736 6.724441 TGATTTCCTGAGTCCTCTTACTGTAA 59.276 38.462 0.00 0.00 0.00 2.41
729 737 6.989155 TTTCCTGAGTCCTCTTACTGTAAA 57.011 37.500 1.46 0.00 0.00 2.01
730 738 6.989155 TTCCTGAGTCCTCTTACTGTAAAA 57.011 37.500 1.46 0.00 0.00 1.52
731 739 6.591750 TCCTGAGTCCTCTTACTGTAAAAG 57.408 41.667 1.46 0.00 0.00 2.27
732 740 6.312529 TCCTGAGTCCTCTTACTGTAAAAGA 58.687 40.000 2.50 0.00 0.00 2.52
733 741 6.208994 TCCTGAGTCCTCTTACTGTAAAAGAC 59.791 42.308 2.50 8.71 0.00 3.01
734 742 6.015350 CCTGAGTCCTCTTACTGTAAAAGACA 60.015 42.308 18.56 7.74 36.35 3.41
735 743 7.310113 CCTGAGTCCTCTTACTGTAAAAGACAT 60.310 40.741 18.56 9.45 37.45 3.06
736 744 7.378966 TGAGTCCTCTTACTGTAAAAGACATG 58.621 38.462 18.56 0.00 37.45 3.21
737 745 7.232737 TGAGTCCTCTTACTGTAAAAGACATGA 59.767 37.037 18.56 5.60 37.45 3.07
738 746 8.140112 AGTCCTCTTACTGTAAAAGACATGAT 57.860 34.615 18.56 0.00 37.45 2.45
739 747 8.598041 AGTCCTCTTACTGTAAAAGACATGATT 58.402 33.333 18.56 0.00 37.45 2.57
740 748 9.871238 GTCCTCTTACTGTAAAAGACATGATTA 57.129 33.333 0.00 0.00 37.45 1.75
790 798 4.803329 AAAATATCAGCCCAGATGGACT 57.197 40.909 0.00 0.00 37.39 3.85
791 799 3.784511 AATATCAGCCCAGATGGACTG 57.215 47.619 8.75 8.75 45.36 3.51
800 808 2.515926 CAGATGGACTGGACATACGG 57.484 55.000 0.00 0.00 42.39 4.02
801 809 1.069204 CAGATGGACTGGACATACGGG 59.931 57.143 0.00 0.00 42.39 5.28
802 810 1.120530 GATGGACTGGACATACGGGT 58.879 55.000 0.00 0.00 0.00 5.28
803 811 1.485066 GATGGACTGGACATACGGGTT 59.515 52.381 0.00 0.00 0.00 4.11
804 812 0.611200 TGGACTGGACATACGGGTTG 59.389 55.000 0.00 0.00 0.00 3.77
805 813 0.899720 GGACTGGACATACGGGTTGA 59.100 55.000 0.00 0.00 0.00 3.18
806 814 1.134788 GGACTGGACATACGGGTTGAG 60.135 57.143 0.00 0.00 0.00 3.02
807 815 1.822990 GACTGGACATACGGGTTGAGA 59.177 52.381 0.00 0.00 0.00 3.27
808 816 1.825474 ACTGGACATACGGGTTGAGAG 59.175 52.381 0.00 0.00 0.00 3.20
809 817 2.100197 CTGGACATACGGGTTGAGAGA 58.900 52.381 0.00 0.00 0.00 3.10
810 818 2.496070 CTGGACATACGGGTTGAGAGAA 59.504 50.000 0.00 0.00 0.00 2.87
811 819 2.901192 TGGACATACGGGTTGAGAGAAA 59.099 45.455 0.00 0.00 0.00 2.52
812 820 3.259902 GGACATACGGGTTGAGAGAAAC 58.740 50.000 0.00 0.00 0.00 2.78
819 827 2.693267 GGTTGAGAGAAACCGGCTAT 57.307 50.000 0.00 0.00 40.28 2.97
820 828 2.987232 GGTTGAGAGAAACCGGCTATT 58.013 47.619 0.00 0.00 40.28 1.73
821 829 3.344515 GGTTGAGAGAAACCGGCTATTT 58.655 45.455 0.00 0.00 40.28 1.40
822 830 3.756963 GGTTGAGAGAAACCGGCTATTTT 59.243 43.478 0.00 0.00 40.28 1.82
823 831 4.939439 GGTTGAGAGAAACCGGCTATTTTA 59.061 41.667 0.00 0.00 40.28 1.52
824 832 5.589050 GGTTGAGAGAAACCGGCTATTTTAT 59.411 40.000 0.00 0.00 40.28 1.40
825 833 6.095021 GGTTGAGAGAAACCGGCTATTTTATT 59.905 38.462 0.00 0.00 40.28 1.40
826 834 7.362660 GGTTGAGAGAAACCGGCTATTTTATTT 60.363 37.037 0.00 0.00 40.28 1.40
827 835 7.696992 TGAGAGAAACCGGCTATTTTATTTT 57.303 32.000 0.00 0.00 0.00 1.82
828 836 7.758495 TGAGAGAAACCGGCTATTTTATTTTC 58.242 34.615 0.00 0.22 0.00 2.29
829 837 7.392113 TGAGAGAAACCGGCTATTTTATTTTCA 59.608 33.333 0.00 0.00 0.00 2.69
830 838 7.762382 AGAGAAACCGGCTATTTTATTTTCAG 58.238 34.615 0.00 0.00 0.00 3.02
831 839 6.330278 AGAAACCGGCTATTTTATTTTCAGC 58.670 36.000 0.00 0.00 0.00 4.26
832 840 5.914898 AACCGGCTATTTTATTTTCAGCT 57.085 34.783 0.00 0.00 32.78 4.24
833 841 7.338449 AGAAACCGGCTATTTTATTTTCAGCTA 59.662 33.333 0.00 0.00 32.78 3.32
834 842 6.373186 ACCGGCTATTTTATTTTCAGCTAC 57.627 37.500 0.00 0.00 32.78 3.58
835 843 5.007332 ACCGGCTATTTTATTTTCAGCTACG 59.993 40.000 0.00 0.00 32.78 3.51
836 844 5.235616 CCGGCTATTTTATTTTCAGCTACGA 59.764 40.000 0.00 0.00 32.78 3.43
837 845 6.355638 CGGCTATTTTATTTTCAGCTACGAG 58.644 40.000 0.00 0.00 32.78 4.18
838 846 6.564125 CGGCTATTTTATTTTCAGCTACGAGG 60.564 42.308 0.00 0.00 32.78 4.63
839 847 6.260271 GGCTATTTTATTTTCAGCTACGAGGT 59.740 38.462 0.00 0.00 32.78 3.85
840 848 7.201705 GGCTATTTTATTTTCAGCTACGAGGTT 60.202 37.037 0.00 0.00 32.78 3.50
841 849 8.823818 GCTATTTTATTTTCAGCTACGAGGTTA 58.176 33.333 0.00 0.00 0.00 2.85
843 851 7.605410 TTTTATTTTCAGCTACGAGGTTAGG 57.395 36.000 0.00 0.00 0.00 2.69
844 852 6.534475 TTATTTTCAGCTACGAGGTTAGGA 57.466 37.500 0.00 0.00 0.00 2.94
845 853 4.877378 TTTTCAGCTACGAGGTTAGGAA 57.123 40.909 0.00 0.00 0.00 3.36
846 854 4.877378 TTTCAGCTACGAGGTTAGGAAA 57.123 40.909 0.00 0.00 0.00 3.13
847 855 4.877378 TTCAGCTACGAGGTTAGGAAAA 57.123 40.909 0.00 0.00 0.00 2.29
848 856 5.416271 TTCAGCTACGAGGTTAGGAAAAT 57.584 39.130 0.00 0.00 0.00 1.82
849 857 4.755411 TCAGCTACGAGGTTAGGAAAATG 58.245 43.478 0.00 0.00 0.00 2.32
850 858 4.464951 TCAGCTACGAGGTTAGGAAAATGA 59.535 41.667 0.00 0.00 0.00 2.57
851 859 5.128827 TCAGCTACGAGGTTAGGAAAATGAT 59.871 40.000 0.00 0.00 0.00 2.45
852 860 5.235186 CAGCTACGAGGTTAGGAAAATGATG 59.765 44.000 0.00 0.00 0.00 3.07
853 861 5.128827 AGCTACGAGGTTAGGAAAATGATGA 59.871 40.000 0.00 0.00 0.00 2.92
854 862 5.992217 GCTACGAGGTTAGGAAAATGATGAT 59.008 40.000 0.00 0.00 0.00 2.45
855 863 6.073548 GCTACGAGGTTAGGAAAATGATGATG 60.074 42.308 0.00 0.00 0.00 3.07
856 864 5.989477 ACGAGGTTAGGAAAATGATGATGA 58.011 37.500 0.00 0.00 0.00 2.92
857 865 5.817816 ACGAGGTTAGGAAAATGATGATGAC 59.182 40.000 0.00 0.00 0.00 3.06
858 866 5.817296 CGAGGTTAGGAAAATGATGATGACA 59.183 40.000 0.00 0.00 0.00 3.58
859 867 6.238211 CGAGGTTAGGAAAATGATGATGACAC 60.238 42.308 0.00 0.00 0.00 3.67
865 873 4.437390 GGAAAATGATGATGACACGACACC 60.437 45.833 0.00 0.00 0.00 4.16
871 879 1.960689 TGATGACACGACACCAGAGAA 59.039 47.619 0.00 0.00 0.00 2.87
874 882 1.337071 TGACACGACACCAGAGAAGAC 59.663 52.381 0.00 0.00 0.00 3.01
876 884 1.964223 ACACGACACCAGAGAAGACAT 59.036 47.619 0.00 0.00 0.00 3.06
888 896 4.149571 CAGAGAAGACATGAAAGTGTGACG 59.850 45.833 0.00 0.00 31.16 4.35
889 897 2.802816 AGAAGACATGAAAGTGTGACGC 59.197 45.455 0.00 0.00 31.16 5.19
893 901 2.325082 ATGAAAGTGTGACGCGGCC 61.325 57.895 10.82 0.19 0.00 6.13
894 902 2.970324 GAAAGTGTGACGCGGCCA 60.970 61.111 10.82 3.71 0.00 5.36
905 913 4.783621 GCGGCCATGCTGACTGGA 62.784 66.667 2.24 0.00 37.02 3.86
906 914 2.821366 CGGCCATGCTGACTGGAC 60.821 66.667 2.24 0.00 38.54 4.02
907 915 2.352422 GGCCATGCTGACTGGACA 59.648 61.111 0.00 0.00 41.82 4.02
909 917 0.895100 GGCCATGCTGACTGGACAAA 60.895 55.000 0.00 0.00 41.82 2.83
910 918 0.961019 GCCATGCTGACTGGACAAAA 59.039 50.000 0.65 0.00 35.70 2.44
912 920 2.028748 GCCATGCTGACTGGACAAAAAT 60.029 45.455 0.65 0.00 35.70 1.82
913 921 3.841643 CCATGCTGACTGGACAAAAATC 58.158 45.455 0.00 0.00 35.70 2.17
914 922 3.495193 CATGCTGACTGGACAAAAATCG 58.505 45.455 0.00 0.00 0.00 3.34
915 923 1.879380 TGCTGACTGGACAAAAATCGG 59.121 47.619 0.00 0.00 0.00 4.18
916 924 1.880027 GCTGACTGGACAAAAATCGGT 59.120 47.619 0.00 0.00 0.00 4.69
932 942 6.642707 AAATCGGTGTGAAATAGGTCAAAA 57.357 33.333 0.00 0.00 0.00 2.44
945 955 1.607148 GGTCAAAACCGGTCAAGAAGG 59.393 52.381 8.04 0.00 35.36 3.46
946 956 1.607148 GTCAAAACCGGTCAAGAAGGG 59.393 52.381 8.04 0.00 0.00 3.95
947 957 0.958822 CAAAACCGGTCAAGAAGGGG 59.041 55.000 8.04 0.00 0.00 4.79
948 958 0.826256 AAAACCGGTCAAGAAGGGGC 60.826 55.000 8.04 0.00 0.00 5.80
949 959 2.002018 AAACCGGTCAAGAAGGGGCA 62.002 55.000 8.04 0.00 0.00 5.36
955 969 0.890683 GTCAAGAAGGGGCATTGTGG 59.109 55.000 0.00 0.00 0.00 4.17
965 979 2.573340 CATTGTGGCCGGGCTTTC 59.427 61.111 29.87 18.76 0.00 2.62
1009 1023 4.647615 CCCTCGCATCCGCCTACG 62.648 72.222 0.00 0.00 39.67 3.51
1049 1063 4.148825 CCGGAGCTGAACCCCGAG 62.149 72.222 12.07 0.00 45.58 4.63
1055 1069 1.227002 GCTGAACCCCGAGATCGTC 60.227 63.158 1.09 0.00 37.74 4.20
1135 1149 0.391661 GTCTGCAAATCCTGGCTCGA 60.392 55.000 0.00 0.00 0.00 4.04
1153 1167 3.075005 CACCCTCACCGATCCCGT 61.075 66.667 0.00 0.00 0.00 5.28
1154 1168 2.284405 ACCCTCACCGATCCCGTT 60.284 61.111 0.00 0.00 0.00 4.44
1215 1229 4.680237 TGCTCGGGTTCCTGCACG 62.680 66.667 0.00 0.00 36.47 5.34
1256 1270 4.308458 CGCTTCGTCCCCACCACA 62.308 66.667 0.00 0.00 0.00 4.17
1425 1439 0.384669 GCCCGATAGCTACACGAACT 59.615 55.000 19.27 0.00 0.00 3.01
1583 1603 2.045242 CGGAGAGGACCAGACGGA 60.045 66.667 0.00 0.00 35.59 4.69
1652 1672 4.390264 CATACTACCTCCAGAGTGATCGA 58.610 47.826 0.00 0.00 0.00 3.59
1655 1675 1.032657 ACCTCCAGAGTGATCGACCG 61.033 60.000 0.00 0.00 0.00 4.79
1762 1782 0.904865 TCCCTGTCGGTGATCAAGCT 60.905 55.000 0.00 0.00 0.00 3.74
1893 1913 1.433879 GGTCCTGACGGAGATGTCG 59.566 63.158 0.00 0.00 40.84 4.35
1940 1960 0.677731 TCCGGAAGCTGATGCCTTTG 60.678 55.000 0.00 0.00 40.80 2.77
1943 1963 1.747355 CGGAAGCTGATGCCTTTGAAT 59.253 47.619 0.00 0.00 40.80 2.57
2151 2197 8.458573 TTTGTTTGGTTAGTTGTGATGTCTAT 57.541 30.769 0.00 0.00 0.00 1.98
2242 2746 6.239217 AGAAATGCACTGACATATACTCCA 57.761 37.500 0.00 0.00 0.00 3.86
2246 2750 2.103094 GCACTGACATATACTCCAGGCA 59.897 50.000 0.00 0.00 0.00 4.75
2253 2757 6.790319 TGACATATACTCCAGGCATCTAGTA 58.210 40.000 0.00 0.00 0.00 1.82
2257 2761 8.754080 ACATATACTCCAGGCATCTAGTAATTC 58.246 37.037 0.00 0.00 0.00 2.17
2258 2762 4.965200 ACTCCAGGCATCTAGTAATTCC 57.035 45.455 0.00 0.00 0.00 3.01
2259 2763 4.561752 ACTCCAGGCATCTAGTAATTCCT 58.438 43.478 0.00 0.00 0.00 3.36
2260 2764 4.591072 ACTCCAGGCATCTAGTAATTCCTC 59.409 45.833 0.00 0.00 0.00 3.71
2261 2765 3.574396 TCCAGGCATCTAGTAATTCCTCG 59.426 47.826 0.00 0.00 0.00 4.63
2262 2766 3.306364 CCAGGCATCTAGTAATTCCTCGG 60.306 52.174 0.00 0.00 0.00 4.63
2263 2767 2.300437 AGGCATCTAGTAATTCCTCGGC 59.700 50.000 0.00 0.00 0.00 5.54
2264 2768 2.037251 GGCATCTAGTAATTCCTCGGCA 59.963 50.000 0.00 0.00 0.00 5.69
2265 2769 3.321497 GCATCTAGTAATTCCTCGGCAG 58.679 50.000 0.00 0.00 0.00 4.85
2266 2770 3.005897 GCATCTAGTAATTCCTCGGCAGA 59.994 47.826 0.00 0.00 0.00 4.26
2267 2771 4.501571 GCATCTAGTAATTCCTCGGCAGAA 60.502 45.833 0.00 0.00 0.00 3.02
2268 2772 4.650754 TCTAGTAATTCCTCGGCAGAAC 57.349 45.455 0.00 0.00 0.00 3.01
2269 2773 2.693267 AGTAATTCCTCGGCAGAACC 57.307 50.000 0.00 0.00 0.00 3.62
2270 2774 1.209747 AGTAATTCCTCGGCAGAACCC 59.790 52.381 0.00 0.00 33.26 4.11
2271 2775 1.209747 GTAATTCCTCGGCAGAACCCT 59.790 52.381 0.00 0.00 33.26 4.34
2272 2776 0.253327 AATTCCTCGGCAGAACCCTC 59.747 55.000 0.00 0.00 33.26 4.30
2273 2777 1.627297 ATTCCTCGGCAGAACCCTCC 61.627 60.000 0.00 0.00 33.26 4.30
2274 2778 2.685380 CCTCGGCAGAACCCTCCT 60.685 66.667 0.00 0.00 33.26 3.69
2275 2779 2.581354 CTCGGCAGAACCCTCCTG 59.419 66.667 0.00 0.00 33.26 3.86
2276 2780 2.203788 TCGGCAGAACCCTCCTGT 60.204 61.111 0.00 0.00 34.29 4.00
2277 2781 0.970937 CTCGGCAGAACCCTCCTGTA 60.971 60.000 0.00 0.00 34.29 2.74
2278 2782 1.218316 CGGCAGAACCCTCCTGTAC 59.782 63.158 0.00 0.00 34.29 2.90
2279 2783 1.258445 CGGCAGAACCCTCCTGTACT 61.258 60.000 0.00 0.00 34.29 2.73
2280 2784 0.984995 GGCAGAACCCTCCTGTACTT 59.015 55.000 0.00 0.00 34.29 2.24
2281 2785 1.066071 GGCAGAACCCTCCTGTACTTC 60.066 57.143 0.00 0.00 34.29 3.01
2282 2786 1.404315 GCAGAACCCTCCTGTACTTCG 60.404 57.143 0.00 0.00 34.29 3.79
2283 2787 0.896226 AGAACCCTCCTGTACTTCGC 59.104 55.000 0.00 0.00 0.00 4.70
2284 2788 0.108281 GAACCCTCCTGTACTTCGCC 60.108 60.000 0.00 0.00 0.00 5.54
2285 2789 1.551019 AACCCTCCTGTACTTCGCCC 61.551 60.000 0.00 0.00 0.00 6.13
2286 2790 2.494918 CCTCCTGTACTTCGCCCG 59.505 66.667 0.00 0.00 0.00 6.13
2287 2791 2.202756 CTCCTGTACTTCGCCCGC 60.203 66.667 0.00 0.00 0.00 6.13
2288 2792 2.678934 TCCTGTACTTCGCCCGCT 60.679 61.111 0.00 0.00 0.00 5.52
2289 2793 2.202756 CCTGTACTTCGCCCGCTC 60.203 66.667 0.00 0.00 0.00 5.03
2290 2794 2.579787 CTGTACTTCGCCCGCTCG 60.580 66.667 0.00 0.00 0.00 5.03
2291 2795 3.338126 CTGTACTTCGCCCGCTCGT 62.338 63.158 0.00 0.00 0.00 4.18
2292 2796 2.879462 GTACTTCGCCCGCTCGTG 60.879 66.667 0.00 0.00 0.00 4.35
2293 2797 4.124351 TACTTCGCCCGCTCGTGG 62.124 66.667 0.00 0.00 0.00 4.94
2301 2805 4.988598 CCGCTCGTGGCCTGTTGT 62.989 66.667 3.32 0.00 37.74 3.32
2302 2806 3.716006 CGCTCGTGGCCTGTTGTG 61.716 66.667 3.32 0.00 37.74 3.33
2303 2807 2.591715 GCTCGTGGCCTGTTGTGT 60.592 61.111 3.32 0.00 34.27 3.72
2304 2808 2.896801 GCTCGTGGCCTGTTGTGTG 61.897 63.158 3.32 0.00 34.27 3.82
2305 2809 1.523711 CTCGTGGCCTGTTGTGTGT 60.524 57.895 3.32 0.00 0.00 3.72
2306 2810 1.775039 CTCGTGGCCTGTTGTGTGTG 61.775 60.000 3.32 0.00 0.00 3.82
2307 2811 2.112198 CGTGGCCTGTTGTGTGTGT 61.112 57.895 3.32 0.00 0.00 3.72
2308 2812 1.433064 GTGGCCTGTTGTGTGTGTG 59.567 57.895 3.32 0.00 0.00 3.82
2309 2813 1.001517 TGGCCTGTTGTGTGTGTGT 60.002 52.632 3.32 0.00 0.00 3.72
2310 2814 1.311651 TGGCCTGTTGTGTGTGTGTG 61.312 55.000 3.32 0.00 0.00 3.82
2311 2815 1.312371 GGCCTGTTGTGTGTGTGTGT 61.312 55.000 0.00 0.00 0.00 3.72
2312 2816 0.179166 GCCTGTTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
2313 2817 0.179166 CCTGTTGTGTGTGTGTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
2314 2818 0.521034 CTGTTGTGTGTGTGTGTGCG 60.521 55.000 0.00 0.00 0.00 5.34
2315 2819 1.867373 GTTGTGTGTGTGTGTGCGC 60.867 57.895 0.00 0.00 0.00 6.09
2316 2820 3.374087 TTGTGTGTGTGTGTGCGCG 62.374 57.895 0.00 0.00 0.00 6.86
2334 2838 2.628106 CGCGCATGTGCTCCATAC 59.372 61.111 27.32 0.00 39.32 2.39
2335 2839 1.884464 CGCGCATGTGCTCCATACT 60.884 57.895 27.32 0.00 39.32 2.12
2336 2840 1.825285 CGCGCATGTGCTCCATACTC 61.825 60.000 27.32 0.00 39.32 2.59
2337 2841 0.531532 GCGCATGTGCTCCATACTCT 60.532 55.000 23.77 0.00 39.32 3.24
2338 2842 1.215244 CGCATGTGCTCCATACTCTG 58.785 55.000 3.25 0.00 39.32 3.35
2339 2843 1.472201 CGCATGTGCTCCATACTCTGT 60.472 52.381 3.25 0.00 39.32 3.41
2340 2844 2.636830 GCATGTGCTCCATACTCTGTT 58.363 47.619 0.00 0.00 38.21 3.16
2341 2845 2.353889 GCATGTGCTCCATACTCTGTTG 59.646 50.000 0.00 0.00 38.21 3.33
2342 2846 3.865446 CATGTGCTCCATACTCTGTTGA 58.135 45.455 0.00 0.00 30.71 3.18
2343 2847 4.256110 CATGTGCTCCATACTCTGTTGAA 58.744 43.478 0.00 0.00 30.71 2.69
2344 2848 3.664107 TGTGCTCCATACTCTGTTGAAC 58.336 45.455 0.00 0.00 0.00 3.18
2345 2849 3.324846 TGTGCTCCATACTCTGTTGAACT 59.675 43.478 0.00 0.00 0.00 3.01
2346 2850 4.202357 TGTGCTCCATACTCTGTTGAACTT 60.202 41.667 0.00 0.00 0.00 2.66
2347 2851 4.153117 GTGCTCCATACTCTGTTGAACTTG 59.847 45.833 0.00 0.00 0.00 3.16
2348 2852 4.202357 TGCTCCATACTCTGTTGAACTTGT 60.202 41.667 0.00 0.00 0.00 3.16
2349 2853 4.757149 GCTCCATACTCTGTTGAACTTGTT 59.243 41.667 0.00 0.00 0.00 2.83
2350 2854 5.334414 GCTCCATACTCTGTTGAACTTGTTG 60.334 44.000 0.00 0.00 0.00 3.33
2351 2855 5.063204 TCCATACTCTGTTGAACTTGTTGG 58.937 41.667 0.00 4.55 0.00 3.77
2352 2856 4.320494 CCATACTCTGTTGAACTTGTTGGC 60.320 45.833 0.00 0.00 0.00 4.52
2353 2857 3.004752 ACTCTGTTGAACTTGTTGGCT 57.995 42.857 0.00 0.00 0.00 4.75
2354 2858 2.945668 ACTCTGTTGAACTTGTTGGCTC 59.054 45.455 0.00 0.00 0.00 4.70
2355 2859 2.945008 CTCTGTTGAACTTGTTGGCTCA 59.055 45.455 0.00 0.00 0.00 4.26
2356 2860 2.945008 TCTGTTGAACTTGTTGGCTCAG 59.055 45.455 0.00 0.00 0.00 3.35
2357 2861 2.684881 CTGTTGAACTTGTTGGCTCAGT 59.315 45.455 0.00 0.00 0.00 3.41
2358 2862 2.423185 TGTTGAACTTGTTGGCTCAGTG 59.577 45.455 0.00 0.00 0.00 3.66
2359 2863 1.679139 TGAACTTGTTGGCTCAGTGG 58.321 50.000 0.00 0.00 0.00 4.00
2360 2864 1.064758 TGAACTTGTTGGCTCAGTGGT 60.065 47.619 0.00 0.00 0.00 4.16
2361 2865 2.024414 GAACTTGTTGGCTCAGTGGTT 58.976 47.619 0.00 0.00 0.00 3.67
2362 2866 2.143876 ACTTGTTGGCTCAGTGGTTT 57.856 45.000 0.00 0.00 0.00 3.27
2363 2867 1.750778 ACTTGTTGGCTCAGTGGTTTG 59.249 47.619 0.00 0.00 0.00 2.93
2364 2868 0.459489 TTGTTGGCTCAGTGGTTTGC 59.541 50.000 0.00 0.00 0.00 3.68
2365 2869 0.395586 TGTTGGCTCAGTGGTTTGCT 60.396 50.000 0.00 0.00 0.00 3.91
2366 2870 0.746659 GTTGGCTCAGTGGTTTGCTT 59.253 50.000 0.00 0.00 0.00 3.91
2367 2871 1.136891 GTTGGCTCAGTGGTTTGCTTT 59.863 47.619 0.00 0.00 0.00 3.51
2368 2872 2.356665 TGGCTCAGTGGTTTGCTTTA 57.643 45.000 0.00 0.00 0.00 1.85
2369 2873 2.875296 TGGCTCAGTGGTTTGCTTTAT 58.125 42.857 0.00 0.00 0.00 1.40
2370 2874 4.027674 TGGCTCAGTGGTTTGCTTTATA 57.972 40.909 0.00 0.00 0.00 0.98
2371 2875 4.599041 TGGCTCAGTGGTTTGCTTTATAT 58.401 39.130 0.00 0.00 0.00 0.86
2372 2876 4.398988 TGGCTCAGTGGTTTGCTTTATATG 59.601 41.667 0.00 0.00 0.00 1.78
2373 2877 4.399303 GGCTCAGTGGTTTGCTTTATATGT 59.601 41.667 0.00 0.00 0.00 2.29
2374 2878 5.588648 GGCTCAGTGGTTTGCTTTATATGTA 59.411 40.000 0.00 0.00 0.00 2.29
2375 2879 6.094881 GGCTCAGTGGTTTGCTTTATATGTAA 59.905 38.462 0.00 0.00 0.00 2.41
2376 2880 7.362574 GGCTCAGTGGTTTGCTTTATATGTAAA 60.363 37.037 0.00 0.00 0.00 2.01
2377 2881 7.698130 GCTCAGTGGTTTGCTTTATATGTAAAG 59.302 37.037 15.53 15.53 46.20 1.85
2389 2893 8.481132 CTTTATATGTAAAGCATGACGAAAGC 57.519 34.615 8.78 0.00 40.08 3.51
2390 2894 3.764885 ATGTAAAGCATGACGAAAGCC 57.235 42.857 0.00 0.00 36.26 4.35
2391 2895 2.778299 TGTAAAGCATGACGAAAGCCT 58.222 42.857 0.00 0.00 0.00 4.58
2392 2896 3.146066 TGTAAAGCATGACGAAAGCCTT 58.854 40.909 0.00 0.00 0.00 4.35
2393 2897 3.568007 TGTAAAGCATGACGAAAGCCTTT 59.432 39.130 0.00 0.00 0.00 3.11
2394 2898 3.733443 AAAGCATGACGAAAGCCTTTT 57.267 38.095 0.00 0.00 0.00 2.27
2395 2899 3.733443 AAGCATGACGAAAGCCTTTTT 57.267 38.095 0.00 0.00 0.00 1.94
2396 2900 3.017265 AGCATGACGAAAGCCTTTTTG 57.983 42.857 0.00 0.00 34.43 2.44
2397 2901 2.061028 GCATGACGAAAGCCTTTTTGG 58.939 47.619 0.00 0.00 32.83 3.28
2398 2902 2.676076 CATGACGAAAGCCTTTTTGGG 58.324 47.619 0.00 0.00 32.83 4.12
2408 3178 1.524008 CCTTTTTGGGCGAGGACACC 61.524 60.000 0.00 0.00 32.11 4.16
2420 3190 2.876550 CGAGGACACCGACATATACTCA 59.123 50.000 0.00 0.00 0.00 3.41
2424 3194 4.039245 AGGACACCGACATATACTCAATGG 59.961 45.833 0.00 0.00 0.00 3.16
2515 3288 5.184096 AGGGAGTACATCATATGTCATCGAC 59.816 44.000 1.90 0.00 43.67 4.20
2554 3327 4.523558 TGTCATCAGGAAAATGAATGCACA 59.476 37.500 0.00 0.00 35.04 4.57
2573 3346 5.414454 TGCACATGTAGGAAATTGTTAGTCC 59.586 40.000 0.00 0.00 0.00 3.85
2613 3386 3.213206 TGTGTGGCCCATCTGAATATC 57.787 47.619 0.00 0.00 0.00 1.63
2632 3405 8.400186 TGAATATCACACTCTAAATGCAATGTG 58.600 33.333 0.00 0.00 39.00 3.21
2633 3406 7.870509 ATATCACACTCTAAATGCAATGTGT 57.129 32.000 0.00 0.00 38.80 3.72
2646 3419 2.668279 GCAATGTGTAAACCTTCGGCAG 60.668 50.000 0.00 0.00 0.00 4.85
2673 3446 6.312918 TGTTAGTAAATCTTCCAGCGAATGTC 59.687 38.462 0.00 0.00 0.00 3.06
2674 3447 4.832248 AGTAAATCTTCCAGCGAATGTCA 58.168 39.130 0.00 0.00 0.00 3.58
2675 3448 5.431765 AGTAAATCTTCCAGCGAATGTCAT 58.568 37.500 0.00 0.00 0.00 3.06
2676 3449 5.882557 AGTAAATCTTCCAGCGAATGTCATT 59.117 36.000 0.00 0.00 0.00 2.57
2758 3531 9.638239 AAAATGTTCGATAACTAATGTTGCATT 57.362 25.926 0.00 0.00 37.59 3.56
2774 3547 6.804677 TGTTGCATTTCGATTTAGCCATAAT 58.195 32.000 0.00 0.00 0.00 1.28
2806 3579 4.288670 ACAACTATATGTGGTCGAGACG 57.711 45.455 0.00 0.00 30.82 4.18
2812 3585 0.243907 ATGTGGTCGAGACGTTGGAG 59.756 55.000 0.00 0.00 0.00 3.86
2879 3674 2.158449 CACATTTGTTCTCGCCAGTCTC 59.842 50.000 0.00 0.00 0.00 3.36
2889 3684 4.148079 TCTCGCCAGTCTCAATATCAGAT 58.852 43.478 0.00 0.00 0.00 2.90
2890 3685 4.217334 TCTCGCCAGTCTCAATATCAGATC 59.783 45.833 0.00 0.00 0.00 2.75
2891 3686 3.057946 TCGCCAGTCTCAATATCAGATCG 60.058 47.826 0.00 0.00 0.00 3.69
2892 3687 3.057946 CGCCAGTCTCAATATCAGATCGA 60.058 47.826 0.00 0.00 0.00 3.59
2908 3703 5.509972 TCAGATCGAACAAAAACACAAAACG 59.490 36.000 0.00 0.00 0.00 3.60
2909 3704 5.509972 CAGATCGAACAAAAACACAAAACGA 59.490 36.000 0.00 0.00 0.00 3.85
3051 3846 0.688087 GGGTCCTCAGGGATCTTCGT 60.688 60.000 0.00 0.00 44.33 3.85
3071 3866 5.361427 TCGTCAAGCCATTTATAAATCGGA 58.639 37.500 21.29 9.01 0.00 4.55
3087 3882 2.682594 TCGGAAGATCCATCATCTGGT 58.317 47.619 1.72 0.00 41.47 4.00
3095 3890 3.688049 TCCATCATCTGGTAGTCCTGA 57.312 47.619 0.00 0.00 46.08 3.86
3122 3917 4.079096 TCCTCCAGGGTTTCCTTTTTGTTA 60.079 41.667 0.00 0.00 42.67 2.41
3134 3965 5.017490 TCCTTTTTGTTAACCAGTTCCACA 58.983 37.500 2.48 0.00 0.00 4.17
3153 3984 1.094785 ACGTCCATTATGTTGCAGCC 58.905 50.000 0.00 0.00 0.00 4.85
3210 4041 4.154195 CACGAGGAAGTTTTAGTGGGAATG 59.846 45.833 0.00 0.00 0.00 2.67
3211 4042 3.127030 CGAGGAAGTTTTAGTGGGAATGC 59.873 47.826 0.00 0.00 0.00 3.56
3212 4043 4.336280 GAGGAAGTTTTAGTGGGAATGCT 58.664 43.478 0.00 0.00 0.00 3.79
3213 4044 5.497474 GAGGAAGTTTTAGTGGGAATGCTA 58.503 41.667 0.00 0.00 0.00 3.49
3214 4045 5.254115 AGGAAGTTTTAGTGGGAATGCTAC 58.746 41.667 0.00 0.00 0.00 3.58
3215 4046 5.014228 AGGAAGTTTTAGTGGGAATGCTACT 59.986 40.000 0.00 0.00 0.00 2.57
3216 4047 5.123979 GGAAGTTTTAGTGGGAATGCTACTG 59.876 44.000 0.29 0.00 0.00 2.74
3217 4048 5.242795 AGTTTTAGTGGGAATGCTACTGT 57.757 39.130 0.29 0.00 0.00 3.55
3218 4049 5.246307 AGTTTTAGTGGGAATGCTACTGTC 58.754 41.667 0.29 0.00 0.00 3.51
3219 4050 3.520290 TTAGTGGGAATGCTACTGTCG 57.480 47.619 0.29 0.00 0.00 4.35
3220 4051 0.537188 AGTGGGAATGCTACTGTCGG 59.463 55.000 0.00 0.00 0.00 4.79
3221 4052 0.249398 GTGGGAATGCTACTGTCGGT 59.751 55.000 0.00 0.00 0.00 4.69
3222 4053 1.479323 GTGGGAATGCTACTGTCGGTA 59.521 52.381 0.00 0.00 0.00 4.02
3223 4054 2.102588 GTGGGAATGCTACTGTCGGTAT 59.897 50.000 0.00 0.00 0.00 2.73
3224 4055 2.364324 TGGGAATGCTACTGTCGGTATC 59.636 50.000 0.00 0.00 0.00 2.24
3225 4056 2.628657 GGGAATGCTACTGTCGGTATCT 59.371 50.000 0.00 0.00 0.00 1.98
3226 4057 3.069729 GGGAATGCTACTGTCGGTATCTT 59.930 47.826 0.00 0.00 0.00 2.40
3227 4058 4.051922 GGAATGCTACTGTCGGTATCTTG 58.948 47.826 0.00 0.00 0.00 3.02
3228 4059 4.202121 GGAATGCTACTGTCGGTATCTTGA 60.202 45.833 0.00 0.00 0.00 3.02
3229 4060 5.339008 AATGCTACTGTCGGTATCTTGAA 57.661 39.130 0.00 0.00 0.00 2.69
3230 4061 4.371855 TGCTACTGTCGGTATCTTGAAG 57.628 45.455 0.00 0.00 0.00 3.02
3231 4062 3.130516 TGCTACTGTCGGTATCTTGAAGG 59.869 47.826 0.00 0.00 0.00 3.46
3232 4063 3.491104 GCTACTGTCGGTATCTTGAAGGG 60.491 52.174 0.00 0.00 0.00 3.95
3233 4064 1.831736 ACTGTCGGTATCTTGAAGGGG 59.168 52.381 0.00 0.00 0.00 4.79
3234 4065 2.108168 CTGTCGGTATCTTGAAGGGGA 58.892 52.381 0.00 0.00 0.00 4.81
3235 4066 2.101582 CTGTCGGTATCTTGAAGGGGAG 59.898 54.545 0.00 0.00 0.00 4.30
3236 4067 1.120530 TCGGTATCTTGAAGGGGAGC 58.879 55.000 0.00 0.00 0.00 4.70
3237 4068 0.106894 CGGTATCTTGAAGGGGAGCC 59.893 60.000 0.00 0.00 0.00 4.70
3238 4069 1.512735 GGTATCTTGAAGGGGAGCCT 58.487 55.000 0.00 0.00 0.00 4.58
3239 4070 1.847088 GGTATCTTGAAGGGGAGCCTT 59.153 52.381 0.00 0.00 0.00 4.35
3240 4071 2.422093 GGTATCTTGAAGGGGAGCCTTG 60.422 54.545 0.00 0.00 0.00 3.61
3241 4072 0.627986 ATCTTGAAGGGGAGCCTTGG 59.372 55.000 0.00 0.00 0.00 3.61
3242 4073 1.680314 CTTGAAGGGGAGCCTTGGC 60.680 63.158 2.97 2.97 0.00 4.52
3243 4074 3.567579 TTGAAGGGGAGCCTTGGCG 62.568 63.158 5.95 0.00 0.00 5.69
3249 4080 4.704833 GGAGCCTTGGCGCAGTGA 62.705 66.667 16.55 0.00 0.00 3.41
3250 4081 2.437359 GAGCCTTGGCGCAGTGAT 60.437 61.111 10.83 0.00 0.00 3.06
3251 4082 1.153369 GAGCCTTGGCGCAGTGATA 60.153 57.895 10.83 0.00 0.00 2.15
3252 4083 0.744414 GAGCCTTGGCGCAGTGATAA 60.744 55.000 10.83 0.00 0.00 1.75
3253 4084 0.322456 AGCCTTGGCGCAGTGATAAA 60.322 50.000 10.83 0.00 0.00 1.40
3254 4085 0.099436 GCCTTGGCGCAGTGATAAAG 59.901 55.000 10.83 0.71 0.00 1.85
3255 4086 0.099436 CCTTGGCGCAGTGATAAAGC 59.901 55.000 10.83 0.00 0.00 3.51
3256 4087 1.089920 CTTGGCGCAGTGATAAAGCT 58.910 50.000 10.83 0.00 0.00 3.74
3257 4088 0.804364 TTGGCGCAGTGATAAAGCTG 59.196 50.000 10.83 0.00 35.93 4.24
3263 4094 1.747709 CAGTGATAAAGCTGCTGCCT 58.252 50.000 12.44 2.45 40.80 4.75
3264 4095 2.089980 CAGTGATAAAGCTGCTGCCTT 58.910 47.619 12.44 8.34 40.80 4.35
3265 4096 3.273434 CAGTGATAAAGCTGCTGCCTTA 58.727 45.455 12.44 10.45 40.80 2.69
3266 4097 3.881688 CAGTGATAAAGCTGCTGCCTTAT 59.118 43.478 16.60 16.60 38.20 1.73
3267 4098 3.881688 AGTGATAAAGCTGCTGCCTTATG 59.118 43.478 20.27 0.00 36.33 1.90
3268 4099 3.879295 GTGATAAAGCTGCTGCCTTATGA 59.121 43.478 20.27 11.85 36.33 2.15
3269 4100 3.879295 TGATAAAGCTGCTGCCTTATGAC 59.121 43.478 20.27 10.14 36.33 3.06
3270 4101 1.467920 AAAGCTGCTGCCTTATGACC 58.532 50.000 12.44 0.00 40.80 4.02
3271 4102 0.329261 AAGCTGCTGCCTTATGACCA 59.671 50.000 12.44 0.00 40.80 4.02
3272 4103 0.549950 AGCTGCTGCCTTATGACCAT 59.450 50.000 12.44 0.00 40.80 3.55
3273 4104 0.666913 GCTGCTGCCTTATGACCATG 59.333 55.000 3.85 0.00 0.00 3.66
3274 4105 1.748244 GCTGCTGCCTTATGACCATGA 60.748 52.381 3.85 0.00 0.00 3.07
3275 4106 2.219458 CTGCTGCCTTATGACCATGAG 58.781 52.381 0.00 0.00 0.00 2.90
3276 4107 1.134007 TGCTGCCTTATGACCATGAGG 60.134 52.381 14.40 14.40 44.73 3.86
3286 4117 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
3287 4118 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
3288 4119 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3289 4120 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
3290 4121 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
3291 4122 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
3292 4123 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
3293 4124 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
3294 4125 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
3295 4126 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
3296 4127 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
3297 4128 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
3298 4129 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
3299 4130 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
3300 4131 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
3314 4145 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3315 4146 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3316 4147 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3317 4148 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3318 4149 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3319 4150 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3320 4151 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3321 4152 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3322 4153 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3323 4154 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3324 4155 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3325 4156 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3326 4157 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3327 4158 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3328 4159 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3329 4160 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3330 4161 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3331 4162 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3332 4163 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3333 4164 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3334 4165 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3335 4166 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
3336 4167 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
3337 4168 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
3338 4169 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
3339 4170 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
3340 4171 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
3341 4172 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
3342 4173 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
3343 4174 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
3344 4175 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
3345 4176 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
3346 4177 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
3347 4178 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
3348 4179 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
3349 4180 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
3350 4181 4.018490 TGCGTACTATAGACCCAAAGTGA 58.982 43.478 6.78 0.00 0.00 3.41
3351 4182 4.647853 TGCGTACTATAGACCCAAAGTGAT 59.352 41.667 6.78 0.00 0.00 3.06
3352 4183 5.221130 GCGTACTATAGACCCAAAGTGATC 58.779 45.833 6.78 0.00 0.00 2.92
3353 4184 5.450171 CGTACTATAGACCCAAAGTGATCG 58.550 45.833 6.78 0.00 0.00 3.69
3354 4185 4.939052 ACTATAGACCCAAAGTGATCGG 57.061 45.455 6.78 0.00 0.00 4.18
3355 4186 4.543689 ACTATAGACCCAAAGTGATCGGA 58.456 43.478 6.78 0.00 0.00 4.55
3356 4187 3.821421 ATAGACCCAAAGTGATCGGAC 57.179 47.619 0.00 0.00 0.00 4.79
3357 4188 0.613777 AGACCCAAAGTGATCGGACC 59.386 55.000 0.00 0.00 0.00 4.46
3358 4189 0.392595 GACCCAAAGTGATCGGACCC 60.393 60.000 0.00 0.00 0.00 4.46
3359 4190 0.840722 ACCCAAAGTGATCGGACCCT 60.841 55.000 0.00 0.00 0.00 4.34
3360 4191 0.328258 CCCAAAGTGATCGGACCCTT 59.672 55.000 0.00 0.00 0.00 3.95
3361 4192 1.679032 CCCAAAGTGATCGGACCCTTC 60.679 57.143 0.00 0.00 0.00 3.46
3362 4193 1.679032 CCAAAGTGATCGGACCCTTCC 60.679 57.143 0.00 0.00 38.77 3.46
3363 4194 0.618981 AAAGTGATCGGACCCTTCCC 59.381 55.000 0.00 0.00 38.99 3.97
3364 4195 1.272554 AAGTGATCGGACCCTTCCCC 61.273 60.000 0.00 0.00 38.99 4.81
3365 4196 2.762459 TGATCGGACCCTTCCCCG 60.762 66.667 0.00 0.00 46.57 5.73
3370 4201 4.735599 GGACCCTTCCCCGACCCT 62.736 72.222 0.00 0.00 35.57 4.34
3371 4202 3.400054 GACCCTTCCCCGACCCTG 61.400 72.222 0.00 0.00 0.00 4.45
3403 4234 0.802222 CGACATGCACCGGACTACTG 60.802 60.000 9.46 0.00 0.00 2.74
3490 4325 6.877611 AGTTCCAGTTTATCACGAACAATT 57.122 33.333 0.00 0.00 0.00 2.32
3538 4373 1.707427 AGCCCACTTGGAACTGAATCT 59.293 47.619 0.00 0.00 37.39 2.40
3544 4379 3.058432 CACTTGGAACTGAATCTGCACTG 60.058 47.826 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 3.209410 GAAGAATGGCGATCATCCTGTT 58.791 45.455 0.00 0.00 34.44 3.16
188 189 2.478292 AGTCATCGAACCCAACCCTAT 58.522 47.619 0.00 0.00 0.00 2.57
483 491 0.032912 ACCAACCGGGACCAAAAGTT 60.033 50.000 6.32 0.00 41.15 2.66
552 560 1.479323 GGACTAATGTGCCTCCACGTA 59.521 52.381 0.00 0.00 45.04 3.57
697 705 1.550976 GGACTCAGGAAATCACGAGGT 59.449 52.381 0.00 0.00 0.00 3.85
698 706 1.827969 AGGACTCAGGAAATCACGAGG 59.172 52.381 0.00 0.00 0.00 4.63
699 707 2.757868 AGAGGACTCAGGAAATCACGAG 59.242 50.000 1.75 0.00 0.00 4.18
700 708 2.808919 AGAGGACTCAGGAAATCACGA 58.191 47.619 1.75 0.00 0.00 4.35
701 709 3.601443 AAGAGGACTCAGGAAATCACG 57.399 47.619 1.75 0.00 0.00 4.35
702 710 5.046950 ACAGTAAGAGGACTCAGGAAATCAC 60.047 44.000 1.75 0.00 0.00 3.06
703 711 5.087323 ACAGTAAGAGGACTCAGGAAATCA 58.913 41.667 1.75 0.00 0.00 2.57
704 712 5.669164 ACAGTAAGAGGACTCAGGAAATC 57.331 43.478 1.75 0.00 0.00 2.17
705 713 7.554959 TTTACAGTAAGAGGACTCAGGAAAT 57.445 36.000 1.75 0.00 0.00 2.17
706 714 6.989155 TTTACAGTAAGAGGACTCAGGAAA 57.011 37.500 1.75 0.00 0.00 3.13
707 715 6.781014 TCTTTTACAGTAAGAGGACTCAGGAA 59.219 38.462 10.27 0.00 0.00 3.36
708 716 6.208994 GTCTTTTACAGTAAGAGGACTCAGGA 59.791 42.308 10.27 0.00 32.60 3.86
709 717 6.015350 TGTCTTTTACAGTAAGAGGACTCAGG 60.015 42.308 10.27 0.00 32.60 3.86
710 718 6.982852 TGTCTTTTACAGTAAGAGGACTCAG 58.017 40.000 10.27 0.00 32.60 3.35
711 719 6.971726 TGTCTTTTACAGTAAGAGGACTCA 57.028 37.500 10.27 4.00 32.60 3.41
712 720 7.603651 TCATGTCTTTTACAGTAAGAGGACTC 58.396 38.462 10.27 0.00 42.70 3.36
713 721 7.540474 TCATGTCTTTTACAGTAAGAGGACT 57.460 36.000 10.27 2.01 42.70 3.85
714 722 8.779354 AATCATGTCTTTTACAGTAAGAGGAC 57.221 34.615 10.27 11.24 42.70 3.85
781 789 1.069204 CCCGTATGTCCAGTCCATCTG 59.931 57.143 0.00 0.00 43.27 2.90
782 790 1.343075 ACCCGTATGTCCAGTCCATCT 60.343 52.381 0.00 0.00 0.00 2.90
783 791 1.120530 ACCCGTATGTCCAGTCCATC 58.879 55.000 0.00 0.00 0.00 3.51
784 792 1.209504 CAACCCGTATGTCCAGTCCAT 59.790 52.381 0.00 0.00 0.00 3.41
785 793 0.611200 CAACCCGTATGTCCAGTCCA 59.389 55.000 0.00 0.00 0.00 4.02
786 794 0.899720 TCAACCCGTATGTCCAGTCC 59.100 55.000 0.00 0.00 0.00 3.85
787 795 1.822990 TCTCAACCCGTATGTCCAGTC 59.177 52.381 0.00 0.00 0.00 3.51
788 796 1.825474 CTCTCAACCCGTATGTCCAGT 59.175 52.381 0.00 0.00 0.00 4.00
789 797 2.100197 TCTCTCAACCCGTATGTCCAG 58.900 52.381 0.00 0.00 0.00 3.86
790 798 2.225382 TCTCTCAACCCGTATGTCCA 57.775 50.000 0.00 0.00 0.00 4.02
791 799 3.259902 GTTTCTCTCAACCCGTATGTCC 58.740 50.000 0.00 0.00 0.00 4.02
792 800 3.259902 GGTTTCTCTCAACCCGTATGTC 58.740 50.000 0.00 0.00 40.53 3.06
793 801 2.353406 CGGTTTCTCTCAACCCGTATGT 60.353 50.000 0.00 0.00 43.12 2.29
794 802 2.268298 CGGTTTCTCTCAACCCGTATG 58.732 52.381 0.00 0.00 43.12 2.39
795 803 1.206371 CCGGTTTCTCTCAACCCGTAT 59.794 52.381 0.00 0.00 43.12 3.06
796 804 0.604578 CCGGTTTCTCTCAACCCGTA 59.395 55.000 0.00 0.00 43.12 4.02
797 805 1.370064 CCGGTTTCTCTCAACCCGT 59.630 57.895 0.00 0.00 43.12 5.28
798 806 2.033194 GCCGGTTTCTCTCAACCCG 61.033 63.158 1.90 0.00 43.12 5.28
799 807 0.611714 TAGCCGGTTTCTCTCAACCC 59.388 55.000 1.90 0.00 43.12 4.11
800 808 2.693267 ATAGCCGGTTTCTCTCAACC 57.307 50.000 1.90 0.00 42.68 3.77
801 809 6.679327 ATAAAATAGCCGGTTTCTCTCAAC 57.321 37.500 1.90 0.00 0.00 3.18
802 810 7.696992 AAATAAAATAGCCGGTTTCTCTCAA 57.303 32.000 1.90 0.00 0.00 3.02
803 811 7.392113 TGAAAATAAAATAGCCGGTTTCTCTCA 59.608 33.333 1.90 0.00 0.00 3.27
804 812 7.758495 TGAAAATAAAATAGCCGGTTTCTCTC 58.242 34.615 1.90 0.00 0.00 3.20
805 813 7.628580 GCTGAAAATAAAATAGCCGGTTTCTCT 60.629 37.037 1.90 0.00 0.00 3.10
806 814 6.472486 GCTGAAAATAAAATAGCCGGTTTCTC 59.528 38.462 1.90 0.00 0.00 2.87
807 815 6.152831 AGCTGAAAATAAAATAGCCGGTTTCT 59.847 34.615 1.90 0.00 35.05 2.52
808 816 6.330278 AGCTGAAAATAAAATAGCCGGTTTC 58.670 36.000 1.90 2.22 35.05 2.78
809 817 6.280855 AGCTGAAAATAAAATAGCCGGTTT 57.719 33.333 1.90 0.00 35.05 3.27
810 818 5.914898 AGCTGAAAATAAAATAGCCGGTT 57.085 34.783 1.90 0.00 35.05 4.44
811 819 5.007332 CGTAGCTGAAAATAAAATAGCCGGT 59.993 40.000 1.90 0.00 35.05 5.28
812 820 5.235616 TCGTAGCTGAAAATAAAATAGCCGG 59.764 40.000 0.00 0.00 35.05 6.13
813 821 6.281848 TCGTAGCTGAAAATAAAATAGCCG 57.718 37.500 0.00 0.00 35.05 5.52
814 822 6.260271 ACCTCGTAGCTGAAAATAAAATAGCC 59.740 38.462 0.00 0.00 35.05 3.93
815 823 7.247929 ACCTCGTAGCTGAAAATAAAATAGC 57.752 36.000 0.00 0.00 34.71 2.97
817 825 9.321562 CCTAACCTCGTAGCTGAAAATAAAATA 57.678 33.333 0.00 0.00 0.00 1.40
818 826 8.044908 TCCTAACCTCGTAGCTGAAAATAAAAT 58.955 33.333 0.00 0.00 0.00 1.82
819 827 7.388437 TCCTAACCTCGTAGCTGAAAATAAAA 58.612 34.615 0.00 0.00 0.00 1.52
820 828 6.938507 TCCTAACCTCGTAGCTGAAAATAAA 58.061 36.000 0.00 0.00 0.00 1.40
821 829 6.534475 TCCTAACCTCGTAGCTGAAAATAA 57.466 37.500 0.00 0.00 0.00 1.40
822 830 6.534475 TTCCTAACCTCGTAGCTGAAAATA 57.466 37.500 0.00 0.00 0.00 1.40
823 831 5.416271 TTCCTAACCTCGTAGCTGAAAAT 57.584 39.130 0.00 0.00 0.00 1.82
824 832 4.877378 TTCCTAACCTCGTAGCTGAAAA 57.123 40.909 0.00 0.00 0.00 2.29
825 833 4.877378 TTTCCTAACCTCGTAGCTGAAA 57.123 40.909 0.00 0.00 0.00 2.69
826 834 4.877378 TTTTCCTAACCTCGTAGCTGAA 57.123 40.909 0.00 0.00 0.00 3.02
827 835 4.464951 TCATTTTCCTAACCTCGTAGCTGA 59.535 41.667 0.00 0.00 0.00 4.26
828 836 4.755411 TCATTTTCCTAACCTCGTAGCTG 58.245 43.478 0.00 0.00 0.00 4.24
829 837 5.128827 TCATCATTTTCCTAACCTCGTAGCT 59.871 40.000 0.00 0.00 0.00 3.32
830 838 5.357257 TCATCATTTTCCTAACCTCGTAGC 58.643 41.667 0.00 0.00 0.00 3.58
831 839 7.169982 GTCATCATCATTTTCCTAACCTCGTAG 59.830 40.741 0.00 0.00 0.00 3.51
832 840 6.984474 GTCATCATCATTTTCCTAACCTCGTA 59.016 38.462 0.00 0.00 0.00 3.43
833 841 5.817816 GTCATCATCATTTTCCTAACCTCGT 59.182 40.000 0.00 0.00 0.00 4.18
834 842 5.817296 TGTCATCATCATTTTCCTAACCTCG 59.183 40.000 0.00 0.00 0.00 4.63
835 843 6.238211 CGTGTCATCATCATTTTCCTAACCTC 60.238 42.308 0.00 0.00 0.00 3.85
836 844 5.586243 CGTGTCATCATCATTTTCCTAACCT 59.414 40.000 0.00 0.00 0.00 3.50
837 845 5.584649 TCGTGTCATCATCATTTTCCTAACC 59.415 40.000 0.00 0.00 0.00 2.85
838 846 6.092122 TGTCGTGTCATCATCATTTTCCTAAC 59.908 38.462 0.00 0.00 0.00 2.34
839 847 6.092122 GTGTCGTGTCATCATCATTTTCCTAA 59.908 38.462 0.00 0.00 0.00 2.69
840 848 5.580691 GTGTCGTGTCATCATCATTTTCCTA 59.419 40.000 0.00 0.00 0.00 2.94
841 849 4.393062 GTGTCGTGTCATCATCATTTTCCT 59.607 41.667 0.00 0.00 0.00 3.36
842 850 4.437390 GGTGTCGTGTCATCATCATTTTCC 60.437 45.833 0.00 0.00 0.00 3.13
843 851 4.154015 TGGTGTCGTGTCATCATCATTTTC 59.846 41.667 0.00 0.00 0.00 2.29
844 852 4.071423 TGGTGTCGTGTCATCATCATTTT 58.929 39.130 0.00 0.00 0.00 1.82
845 853 3.673902 TGGTGTCGTGTCATCATCATTT 58.326 40.909 0.00 0.00 0.00 2.32
846 854 3.055891 TCTGGTGTCGTGTCATCATCATT 60.056 43.478 0.00 0.00 0.00 2.57
847 855 2.497273 TCTGGTGTCGTGTCATCATCAT 59.503 45.455 0.00 0.00 0.00 2.45
848 856 1.892474 TCTGGTGTCGTGTCATCATCA 59.108 47.619 0.00 0.00 0.00 3.07
849 857 2.164422 TCTCTGGTGTCGTGTCATCATC 59.836 50.000 0.00 0.00 0.00 2.92
850 858 2.171003 TCTCTGGTGTCGTGTCATCAT 58.829 47.619 0.00 0.00 0.00 2.45
851 859 1.616159 TCTCTGGTGTCGTGTCATCA 58.384 50.000 0.00 0.00 0.00 3.07
852 860 2.229062 TCTTCTCTGGTGTCGTGTCATC 59.771 50.000 0.00 0.00 0.00 2.92
853 861 2.029828 GTCTTCTCTGGTGTCGTGTCAT 60.030 50.000 0.00 0.00 0.00 3.06
854 862 1.337071 GTCTTCTCTGGTGTCGTGTCA 59.663 52.381 0.00 0.00 0.00 3.58
855 863 1.337071 TGTCTTCTCTGGTGTCGTGTC 59.663 52.381 0.00 0.00 0.00 3.67
856 864 1.399714 TGTCTTCTCTGGTGTCGTGT 58.600 50.000 0.00 0.00 0.00 4.49
857 865 2.029918 TCATGTCTTCTCTGGTGTCGTG 60.030 50.000 0.00 0.00 0.00 4.35
858 866 2.239400 TCATGTCTTCTCTGGTGTCGT 58.761 47.619 0.00 0.00 0.00 4.34
859 867 3.303881 TTCATGTCTTCTCTGGTGTCG 57.696 47.619 0.00 0.00 0.00 4.35
865 873 4.149571 CGTCACACTTTCATGTCTTCTCTG 59.850 45.833 0.00 0.00 0.00 3.35
871 879 1.139989 CGCGTCACACTTTCATGTCT 58.860 50.000 0.00 0.00 0.00 3.41
874 882 1.154413 GCCGCGTCACACTTTCATG 60.154 57.895 4.92 0.00 0.00 3.07
876 884 2.970324 GGCCGCGTCACACTTTCA 60.970 61.111 4.92 0.00 0.00 2.69
888 896 4.783621 TCCAGTCAGCATGGCCGC 62.784 66.667 0.00 0.00 46.31 6.53
889 897 2.821366 GTCCAGTCAGCATGGCCG 60.821 66.667 0.00 0.00 46.31 6.13
893 901 3.495193 CGATTTTTGTCCAGTCAGCATG 58.505 45.455 0.00 0.00 37.54 4.06
894 902 2.489329 CCGATTTTTGTCCAGTCAGCAT 59.511 45.455 0.00 0.00 0.00 3.79
903 911 5.048294 ACCTATTTCACACCGATTTTTGTCC 60.048 40.000 0.00 0.00 0.00 4.02
905 913 5.533154 TGACCTATTTCACACCGATTTTTGT 59.467 36.000 0.00 0.00 0.00 2.83
906 914 6.007936 TGACCTATTTCACACCGATTTTTG 57.992 37.500 0.00 0.00 0.00 2.44
907 915 6.642707 TTGACCTATTTCACACCGATTTTT 57.357 33.333 0.00 0.00 0.00 1.94
909 917 6.443792 GTTTTGACCTATTTCACACCGATTT 58.556 36.000 0.00 0.00 0.00 2.17
910 918 5.048294 GGTTTTGACCTATTTCACACCGATT 60.048 40.000 0.00 0.00 0.00 3.34
912 920 3.816523 GGTTTTGACCTATTTCACACCGA 59.183 43.478 0.00 0.00 0.00 4.69
913 921 3.364565 CGGTTTTGACCTATTTCACACCG 60.365 47.826 8.09 8.09 42.22 4.94
914 922 3.057806 CCGGTTTTGACCTATTTCACACC 60.058 47.826 0.00 0.00 0.00 4.16
915 923 3.566742 ACCGGTTTTGACCTATTTCACAC 59.433 43.478 0.00 0.00 0.00 3.82
916 924 3.816523 GACCGGTTTTGACCTATTTCACA 59.183 43.478 9.42 0.00 0.00 3.58
932 942 1.789576 AATGCCCCTTCTTGACCGGT 61.790 55.000 6.92 6.92 0.00 5.28
935 945 0.890683 CACAATGCCCCTTCTTGACC 59.109 55.000 0.00 0.00 0.00 4.02
936 946 0.890683 CCACAATGCCCCTTCTTGAC 59.109 55.000 0.00 0.00 0.00 3.18
937 947 0.899717 GCCACAATGCCCCTTCTTGA 60.900 55.000 0.00 0.00 0.00 3.02
939 949 1.610379 GGCCACAATGCCCCTTCTT 60.610 57.895 0.00 0.00 46.11 2.52
940 950 2.037847 GGCCACAATGCCCCTTCT 59.962 61.111 0.00 0.00 46.11 2.85
947 957 3.647649 GAAAGCCCGGCCACAATGC 62.648 63.158 5.55 0.00 0.00 3.56
948 958 2.216750 CTGAAAGCCCGGCCACAATG 62.217 60.000 5.55 0.00 0.00 2.82
949 959 1.978617 CTGAAAGCCCGGCCACAAT 60.979 57.895 5.55 0.00 0.00 2.71
955 969 3.276642 TAACCCCTGAAAGCCCGGC 62.277 63.158 0.00 0.00 0.00 6.13
965 979 4.412199 TGGAAGTCCATATTCTAACCCCTG 59.588 45.833 0.00 0.00 42.01 4.45
969 983 6.096423 GGGTTTTGGAAGTCCATATTCTAACC 59.904 42.308 0.00 8.18 46.97 2.85
970 984 6.890268 AGGGTTTTGGAAGTCCATATTCTAAC 59.110 38.462 0.00 0.50 46.97 2.34
1009 1023 2.031768 GCGCCATGGATCCTCCTC 59.968 66.667 18.40 0.00 37.46 3.71
1115 1129 1.372087 CGAGCCAGGATTTGCAGACC 61.372 60.000 0.00 0.00 0.00 3.85
1124 1138 2.039624 AGGGTGTCGAGCCAGGAT 59.960 61.111 8.07 0.00 42.81 3.24
1135 1149 3.075005 CGGGATCGGTGAGGGTGT 61.075 66.667 0.00 0.00 0.00 4.16
1153 1167 2.664398 GGTACCGGCGGAGGAAAA 59.336 61.111 35.78 7.35 34.73 2.29
1154 1168 3.762247 CGGTACCGGCGGAGGAAA 61.762 66.667 35.78 9.30 35.56 3.13
1205 1219 4.309950 ACCGGGTCGTGCAGGAAC 62.310 66.667 16.08 16.08 0.00 3.62
1397 1411 3.108343 CTATCGGGCACGTCGTCT 58.892 61.111 8.89 0.00 41.85 4.18
1516 1530 2.743928 CCGCCTGCACCAAGTCTC 60.744 66.667 0.00 0.00 0.00 3.36
1583 1603 4.469945 TCCAGGTTGAAATCGAGGTAGATT 59.530 41.667 0.00 0.00 42.13 2.40
1652 1672 2.518349 CCAACAAGCACACCCGGT 60.518 61.111 0.00 0.00 0.00 5.28
1655 1675 2.917227 CCCCCAACAAGCACACCC 60.917 66.667 0.00 0.00 0.00 4.61
1823 1843 3.864686 CGCAAGGTCGCCAATCCG 61.865 66.667 0.00 0.00 0.00 4.18
1844 1864 3.720193 CACAGCTGCAGCACGTCC 61.720 66.667 38.24 10.15 45.16 4.79
1853 1873 1.735920 CTCAGTCGACCACAGCTGC 60.736 63.158 15.27 0.00 0.00 5.25
1893 1913 1.401905 GCGGTTCATCTTCACCCATTC 59.598 52.381 0.00 0.00 0.00 2.67
1940 1960 1.448985 TCAAACGTGCTGGGCTATTC 58.551 50.000 0.00 0.00 0.00 1.75
1943 1963 1.164411 CAATCAAACGTGCTGGGCTA 58.836 50.000 0.00 0.00 0.00 3.93
2151 2197 9.844790 CATCATGCACTAAACAGAAGAAATTAA 57.155 29.630 0.00 0.00 0.00 1.40
2157 2203 8.969260 ATATTCATCATGCACTAAACAGAAGA 57.031 30.769 0.00 0.00 0.00 2.87
2224 2728 2.103094 GCCTGGAGTATATGTCAGTGCA 59.897 50.000 0.00 0.00 0.00 4.57
2242 2746 2.300437 GCCGAGGAATTACTAGATGCCT 59.700 50.000 0.00 0.00 37.81 4.75
2246 2750 4.039366 GGTTCTGCCGAGGAATTACTAGAT 59.961 45.833 0.00 0.00 0.00 1.98
2253 2757 0.253327 GAGGGTTCTGCCGAGGAATT 59.747 55.000 0.00 0.00 38.44 2.17
2257 2761 2.685380 AGGAGGGTTCTGCCGAGG 60.685 66.667 0.00 0.00 38.44 4.63
2258 2762 0.970937 TACAGGAGGGTTCTGCCGAG 60.971 60.000 0.00 0.00 38.44 4.63
2259 2763 1.077805 TACAGGAGGGTTCTGCCGA 59.922 57.895 0.00 0.00 38.44 5.54
2260 2764 1.218316 GTACAGGAGGGTTCTGCCG 59.782 63.158 0.00 0.00 38.44 5.69
2261 2765 0.984995 AAGTACAGGAGGGTTCTGCC 59.015 55.000 0.00 0.00 35.78 4.85
2262 2766 1.404315 CGAAGTACAGGAGGGTTCTGC 60.404 57.143 0.00 0.00 35.78 4.26
2263 2767 1.404315 GCGAAGTACAGGAGGGTTCTG 60.404 57.143 0.00 0.00 38.16 3.02
2264 2768 0.896226 GCGAAGTACAGGAGGGTTCT 59.104 55.000 0.00 0.00 0.00 3.01
2265 2769 0.108281 GGCGAAGTACAGGAGGGTTC 60.108 60.000 0.00 0.00 0.00 3.62
2266 2770 1.551019 GGGCGAAGTACAGGAGGGTT 61.551 60.000 0.00 0.00 0.00 4.11
2267 2771 1.988406 GGGCGAAGTACAGGAGGGT 60.988 63.158 0.00 0.00 0.00 4.34
2268 2772 2.901042 GGGCGAAGTACAGGAGGG 59.099 66.667 0.00 0.00 0.00 4.30
2269 2773 2.494918 CGGGCGAAGTACAGGAGG 59.505 66.667 0.00 0.00 0.00 4.30
2270 2774 2.202756 GCGGGCGAAGTACAGGAG 60.203 66.667 0.00 0.00 0.00 3.69
2271 2775 2.678934 AGCGGGCGAAGTACAGGA 60.679 61.111 0.00 0.00 0.00 3.86
2272 2776 2.202756 GAGCGGGCGAAGTACAGG 60.203 66.667 0.00 0.00 0.00 4.00
2273 2777 2.579787 CGAGCGGGCGAAGTACAG 60.580 66.667 0.00 0.00 0.00 2.74
2274 2778 3.367743 ACGAGCGGGCGAAGTACA 61.368 61.111 0.00 0.00 34.83 2.90
2275 2779 2.879462 CACGAGCGGGCGAAGTAC 60.879 66.667 3.79 0.00 34.83 2.73
2276 2780 4.124351 CCACGAGCGGGCGAAGTA 62.124 66.667 3.79 0.00 34.83 2.24
2284 2788 4.988598 ACAACAGGCCACGAGCGG 62.989 66.667 5.01 0.00 45.17 5.52
2285 2789 3.716006 CACAACAGGCCACGAGCG 61.716 66.667 5.01 0.00 45.17 5.03
2286 2790 2.591715 ACACAACAGGCCACGAGC 60.592 61.111 5.01 0.00 42.60 5.03
2287 2791 1.523711 ACACACAACAGGCCACGAG 60.524 57.895 5.01 0.00 0.00 4.18
2288 2792 1.817520 CACACACAACAGGCCACGA 60.818 57.895 5.01 0.00 0.00 4.35
2289 2793 2.112198 ACACACACAACAGGCCACG 61.112 57.895 5.01 0.00 0.00 4.94
2290 2794 1.312371 ACACACACACAACAGGCCAC 61.312 55.000 5.01 0.00 0.00 5.01
2291 2795 1.001517 ACACACACACAACAGGCCA 60.002 52.632 5.01 0.00 0.00 5.36
2292 2796 1.312371 ACACACACACACAACAGGCC 61.312 55.000 0.00 0.00 0.00 5.19
2293 2797 0.179166 CACACACACACACAACAGGC 60.179 55.000 0.00 0.00 0.00 4.85
2294 2798 0.179166 GCACACACACACACAACAGG 60.179 55.000 0.00 0.00 0.00 4.00
2295 2799 0.521034 CGCACACACACACACAACAG 60.521 55.000 0.00 0.00 0.00 3.16
2296 2800 1.499502 CGCACACACACACACAACA 59.500 52.632 0.00 0.00 0.00 3.33
2297 2801 1.867373 GCGCACACACACACACAAC 60.867 57.895 0.30 0.00 0.00 3.32
2298 2802 2.482831 GCGCACACACACACACAA 59.517 55.556 0.30 0.00 0.00 3.33
2299 2803 3.858989 CGCGCACACACACACACA 61.859 61.111 8.75 0.00 0.00 3.72
2317 2821 1.825285 GAGTATGGAGCACATGCGCG 61.825 60.000 0.00 0.00 45.57 6.86
2318 2822 0.531532 AGAGTATGGAGCACATGCGC 60.532 55.000 0.00 0.00 45.57 6.09
2319 2823 1.215244 CAGAGTATGGAGCACATGCG 58.785 55.000 4.37 0.00 45.57 4.73
2320 2824 2.322355 ACAGAGTATGGAGCACATGC 57.678 50.000 4.37 0.00 40.82 4.06
2321 2825 3.865446 TCAACAGAGTATGGAGCACATG 58.135 45.455 4.37 0.00 40.82 3.21
2322 2826 4.019860 AGTTCAACAGAGTATGGAGCACAT 60.020 41.667 0.00 0.00 43.68 3.21
2323 2827 3.324846 AGTTCAACAGAGTATGGAGCACA 59.675 43.478 0.00 0.00 0.00 4.57
2324 2828 3.931578 AGTTCAACAGAGTATGGAGCAC 58.068 45.455 0.00 0.00 0.00 4.40
2325 2829 4.202357 ACAAGTTCAACAGAGTATGGAGCA 60.202 41.667 0.00 0.00 0.00 4.26
2326 2830 4.319177 ACAAGTTCAACAGAGTATGGAGC 58.681 43.478 0.00 0.00 0.00 4.70
2327 2831 5.180117 CCAACAAGTTCAACAGAGTATGGAG 59.820 44.000 0.00 0.00 0.00 3.86
2328 2832 5.063204 CCAACAAGTTCAACAGAGTATGGA 58.937 41.667 0.00 0.00 0.00 3.41
2329 2833 4.320494 GCCAACAAGTTCAACAGAGTATGG 60.320 45.833 0.00 0.00 0.00 2.74
2330 2834 4.516698 AGCCAACAAGTTCAACAGAGTATG 59.483 41.667 0.00 0.00 0.00 2.39
2331 2835 4.718961 AGCCAACAAGTTCAACAGAGTAT 58.281 39.130 0.00 0.00 0.00 2.12
2332 2836 4.127171 GAGCCAACAAGTTCAACAGAGTA 58.873 43.478 0.00 0.00 0.00 2.59
2333 2837 2.945668 GAGCCAACAAGTTCAACAGAGT 59.054 45.455 0.00 0.00 0.00 3.24
2334 2838 2.945008 TGAGCCAACAAGTTCAACAGAG 59.055 45.455 0.00 0.00 0.00 3.35
2335 2839 2.945008 CTGAGCCAACAAGTTCAACAGA 59.055 45.455 0.00 0.00 0.00 3.41
2336 2840 2.684881 ACTGAGCCAACAAGTTCAACAG 59.315 45.455 0.00 0.00 0.00 3.16
2337 2841 2.423185 CACTGAGCCAACAAGTTCAACA 59.577 45.455 0.00 0.00 0.00 3.33
2338 2842 2.223572 CCACTGAGCCAACAAGTTCAAC 60.224 50.000 0.00 0.00 0.00 3.18
2339 2843 2.023673 CCACTGAGCCAACAAGTTCAA 58.976 47.619 0.00 0.00 0.00 2.69
2340 2844 1.064758 ACCACTGAGCCAACAAGTTCA 60.065 47.619 0.00 0.00 0.00 3.18
2341 2845 1.680338 ACCACTGAGCCAACAAGTTC 58.320 50.000 0.00 0.00 0.00 3.01
2342 2846 2.143876 AACCACTGAGCCAACAAGTT 57.856 45.000 0.00 0.00 0.00 2.66
2343 2847 1.750778 CAAACCACTGAGCCAACAAGT 59.249 47.619 0.00 0.00 0.00 3.16
2344 2848 1.536709 GCAAACCACTGAGCCAACAAG 60.537 52.381 0.00 0.00 0.00 3.16
2345 2849 0.459489 GCAAACCACTGAGCCAACAA 59.541 50.000 0.00 0.00 0.00 2.83
2346 2850 0.395586 AGCAAACCACTGAGCCAACA 60.396 50.000 0.00 0.00 0.00 3.33
2347 2851 0.746659 AAGCAAACCACTGAGCCAAC 59.253 50.000 0.00 0.00 0.00 3.77
2348 2852 1.484038 AAAGCAAACCACTGAGCCAA 58.516 45.000 0.00 0.00 0.00 4.52
2349 2853 2.356665 TAAAGCAAACCACTGAGCCA 57.643 45.000 0.00 0.00 0.00 4.75
2350 2854 4.399303 ACATATAAAGCAAACCACTGAGCC 59.601 41.667 0.00 0.00 0.00 4.70
2351 2855 5.567138 ACATATAAAGCAAACCACTGAGC 57.433 39.130 0.00 0.00 0.00 4.26
2364 2868 7.587757 GGCTTTCGTCATGCTTTACATATAAAG 59.412 37.037 0.00 0.00 46.95 1.85
2365 2869 7.282224 AGGCTTTCGTCATGCTTTACATATAAA 59.718 33.333 0.00 0.00 36.64 1.40
2366 2870 6.765989 AGGCTTTCGTCATGCTTTACATATAA 59.234 34.615 0.00 0.00 36.64 0.98
2367 2871 6.288294 AGGCTTTCGTCATGCTTTACATATA 58.712 36.000 0.00 0.00 36.64 0.86
2368 2872 5.126067 AGGCTTTCGTCATGCTTTACATAT 58.874 37.500 0.00 0.00 36.64 1.78
2369 2873 4.513442 AGGCTTTCGTCATGCTTTACATA 58.487 39.130 0.00 0.00 36.64 2.29
2370 2874 3.347216 AGGCTTTCGTCATGCTTTACAT 58.653 40.909 0.00 0.00 40.66 2.29
2371 2875 2.778299 AGGCTTTCGTCATGCTTTACA 58.222 42.857 0.00 0.00 0.00 2.41
2372 2876 3.831715 AAGGCTTTCGTCATGCTTTAC 57.168 42.857 0.00 0.00 0.00 2.01
2373 2877 4.846779 AAAAGGCTTTCGTCATGCTTTA 57.153 36.364 13.76 0.00 0.00 1.85
2374 2878 3.733443 AAAAGGCTTTCGTCATGCTTT 57.267 38.095 13.76 0.00 0.00 3.51
2375 2879 3.383761 CAAAAAGGCTTTCGTCATGCTT 58.616 40.909 13.76 0.00 0.00 3.91
2376 2880 2.288395 CCAAAAAGGCTTTCGTCATGCT 60.288 45.455 13.76 0.00 0.00 3.79
2377 2881 2.061028 CCAAAAAGGCTTTCGTCATGC 58.939 47.619 13.76 0.00 0.00 4.06
2378 2882 2.676076 CCCAAAAAGGCTTTCGTCATG 58.324 47.619 13.76 7.64 35.39 3.07
2389 2893 1.524008 GGTGTCCTCGCCCAAAAAGG 61.524 60.000 0.00 0.00 38.21 3.11
2390 2894 1.852067 CGGTGTCCTCGCCCAAAAAG 61.852 60.000 0.00 0.00 40.82 2.27
2391 2895 1.894756 CGGTGTCCTCGCCCAAAAA 60.895 57.895 0.00 0.00 40.82 1.94
2392 2896 2.281208 CGGTGTCCTCGCCCAAAA 60.281 61.111 0.00 0.00 40.82 2.44
2393 2897 3.235481 TCGGTGTCCTCGCCCAAA 61.235 61.111 0.00 0.00 40.82 3.28
2394 2898 3.998672 GTCGGTGTCCTCGCCCAA 61.999 66.667 0.00 0.00 40.82 4.12
2395 2899 4.987890 TATATGTCGGTGTCCTCGCCCA 62.988 54.545 0.00 0.00 40.82 5.36
2396 2900 1.745320 ATATGTCGGTGTCCTCGCCC 61.745 60.000 0.00 0.00 40.82 6.13
2397 2901 0.956633 TATATGTCGGTGTCCTCGCC 59.043 55.000 0.00 0.00 40.52 5.54
2398 2902 1.607628 AGTATATGTCGGTGTCCTCGC 59.392 52.381 0.00 0.00 0.00 5.03
2399 2903 2.876550 TGAGTATATGTCGGTGTCCTCG 59.123 50.000 0.00 0.00 0.00 4.63
2400 2904 4.913335 TTGAGTATATGTCGGTGTCCTC 57.087 45.455 0.00 0.00 0.00 3.71
2401 2905 4.039245 CCATTGAGTATATGTCGGTGTCCT 59.961 45.833 0.00 0.00 0.00 3.85
2402 2906 4.307432 CCATTGAGTATATGTCGGTGTCC 58.693 47.826 0.00 0.00 0.00 4.02
2403 2907 4.202223 ACCCATTGAGTATATGTCGGTGTC 60.202 45.833 0.00 0.00 0.00 3.67
2404 2908 3.709653 ACCCATTGAGTATATGTCGGTGT 59.290 43.478 0.00 0.00 0.00 4.16
2483 3256 8.184304 ACATATGATGTACTCCCTCTCTAAAC 57.816 38.462 10.38 0.00 42.78 2.01
2488 3261 6.404184 CGATGACATATGATGTACTCCCTCTC 60.404 46.154 10.38 0.00 45.03 3.20
2529 3302 6.377712 TGTGCATTCATTTTCCTGATGACATA 59.622 34.615 0.00 0.00 33.51 2.29
2538 3311 5.263599 TCCTACATGTGCATTCATTTTCCT 58.736 37.500 9.11 0.00 0.00 3.36
2554 3327 6.655003 CACACTGGACTAACAATTTCCTACAT 59.345 38.462 0.00 0.00 0.00 2.29
2573 3346 7.226084 CACACAAATGTTAAAACAACACACTG 58.774 34.615 0.00 0.00 43.03 3.66
2613 3386 6.582295 GGTTTACACATTGCATTTAGAGTGTG 59.418 38.462 10.85 0.00 40.11 3.82
2646 3419 6.476243 TTCGCTGGAAGATTTACTAACAAC 57.524 37.500 0.00 0.00 34.07 3.32
2673 3446 8.627403 AGTATGGATCACAAATCAAAGCTAATG 58.373 33.333 0.00 0.00 0.00 1.90
2674 3447 8.757982 AGTATGGATCACAAATCAAAGCTAAT 57.242 30.769 0.00 0.00 0.00 1.73
2675 3448 9.330063 CTAGTATGGATCACAAATCAAAGCTAA 57.670 33.333 0.00 0.00 0.00 3.09
2676 3449 8.486210 ACTAGTATGGATCACAAATCAAAGCTA 58.514 33.333 0.00 0.00 0.00 3.32
2746 3519 6.264832 TGGCTAAATCGAAATGCAACATTAG 58.735 36.000 0.00 0.00 0.00 1.73
2750 3523 4.717233 ATGGCTAAATCGAAATGCAACA 57.283 36.364 0.00 0.00 0.00 3.33
2758 3531 9.066892 AGATGCTTTTATTATGGCTAAATCGAA 57.933 29.630 0.00 0.00 0.00 3.71
2774 3547 9.542462 GACCACATATAGTTGTAGATGCTTTTA 57.458 33.333 0.00 0.00 31.98 1.52
2795 3568 0.386985 GTCTCCAACGTCTCGACCAC 60.387 60.000 0.00 0.00 0.00 4.16
2812 3585 2.036992 CTCCTAGCCTCATGGATGTGTC 59.963 54.545 0.00 0.00 32.27 3.67
2822 3595 4.362677 AGATAAACAACCTCCTAGCCTCA 58.637 43.478 0.00 0.00 0.00 3.86
2879 3674 8.726650 TTGTGTTTTTGTTCGATCTGATATTG 57.273 30.769 0.00 0.00 0.00 1.90
2889 3684 5.391449 TGATCGTTTTGTGTTTTTGTTCGA 58.609 33.333 0.00 0.00 0.00 3.71
2890 3685 5.672653 TGATCGTTTTGTGTTTTTGTTCG 57.327 34.783 0.00 0.00 0.00 3.95
2891 3686 6.090223 AGGTTGATCGTTTTGTGTTTTTGTTC 59.910 34.615 0.00 0.00 0.00 3.18
2892 3687 5.929415 AGGTTGATCGTTTTGTGTTTTTGTT 59.071 32.000 0.00 0.00 0.00 2.83
2908 3703 6.202954 CCACATACGGAATCTAAAGGTTGATC 59.797 42.308 0.00 0.00 0.00 2.92
2909 3704 6.055588 CCACATACGGAATCTAAAGGTTGAT 58.944 40.000 0.00 0.00 0.00 2.57
2982 3777 7.732664 GCACCAGCTGAAAATAAAACAATAAG 58.267 34.615 17.39 0.00 37.91 1.73
3051 3846 7.174946 GGATCTTCCGATTTATAAATGGCTTGA 59.825 37.037 15.39 11.05 0.00 3.02
3083 3878 1.686052 GAGGAGCATCAGGACTACCAG 59.314 57.143 0.00 0.00 38.94 4.00
3085 3880 1.044611 GGAGGAGCATCAGGACTACC 58.955 60.000 0.00 0.00 36.25 3.18
3087 3882 2.079170 CTGGAGGAGCATCAGGACTA 57.921 55.000 0.00 0.00 36.25 2.59
3095 3890 0.551131 AGGAAACCCTGGAGGAGCAT 60.551 55.000 0.00 0.00 39.89 3.79
3122 3917 0.472471 ATGGACGTGTGGAACTGGTT 59.528 50.000 0.00 0.00 38.04 3.67
3134 3965 1.094785 GGCTGCAACATAATGGACGT 58.905 50.000 0.50 0.00 0.00 4.34
3210 4041 3.491104 CCCTTCAAGATACCGACAGTAGC 60.491 52.174 0.00 0.00 37.64 3.58
3211 4042 3.068307 CCCCTTCAAGATACCGACAGTAG 59.932 52.174 0.00 0.00 33.42 2.57
3212 4043 3.028850 CCCCTTCAAGATACCGACAGTA 58.971 50.000 0.00 0.00 34.76 2.74
3213 4044 1.831736 CCCCTTCAAGATACCGACAGT 59.168 52.381 0.00 0.00 0.00 3.55
3214 4045 2.101582 CTCCCCTTCAAGATACCGACAG 59.898 54.545 0.00 0.00 0.00 3.51
3215 4046 2.108168 CTCCCCTTCAAGATACCGACA 58.892 52.381 0.00 0.00 0.00 4.35
3216 4047 1.202545 GCTCCCCTTCAAGATACCGAC 60.203 57.143 0.00 0.00 0.00 4.79
3217 4048 1.120530 GCTCCCCTTCAAGATACCGA 58.879 55.000 0.00 0.00 0.00 4.69
3218 4049 0.106894 GGCTCCCCTTCAAGATACCG 59.893 60.000 0.00 0.00 0.00 4.02
3219 4050 1.512735 AGGCTCCCCTTCAAGATACC 58.487 55.000 0.00 0.00 38.74 2.73
3232 4063 2.593468 TATCACTGCGCCAAGGCTCC 62.593 60.000 4.18 0.71 39.32 4.70
3233 4064 0.744414 TTATCACTGCGCCAAGGCTC 60.744 55.000 4.18 1.20 39.32 4.70
3234 4065 0.322456 TTTATCACTGCGCCAAGGCT 60.322 50.000 4.18 0.00 39.32 4.58
3235 4066 0.099436 CTTTATCACTGCGCCAAGGC 59.901 55.000 4.18 0.00 37.85 4.35
3236 4067 0.099436 GCTTTATCACTGCGCCAAGG 59.901 55.000 4.18 0.00 0.00 3.61
3237 4068 1.089920 AGCTTTATCACTGCGCCAAG 58.910 50.000 4.18 0.00 0.00 3.61
3238 4069 0.804364 CAGCTTTATCACTGCGCCAA 59.196 50.000 4.18 0.00 0.00 4.52
3239 4070 2.470156 CAGCTTTATCACTGCGCCA 58.530 52.632 4.18 0.00 0.00 5.69
3244 4075 1.747709 AGGCAGCAGCTTTATCACTG 58.252 50.000 0.00 0.00 41.70 3.66
3245 4076 2.503895 AAGGCAGCAGCTTTATCACT 57.496 45.000 0.00 0.00 38.40 3.41
3246 4077 3.879295 TCATAAGGCAGCAGCTTTATCAC 59.121 43.478 14.34 0.00 46.34 3.06
3247 4078 3.879295 GTCATAAGGCAGCAGCTTTATCA 59.121 43.478 14.34 0.52 46.34 2.15
3248 4079 3.251972 GGTCATAAGGCAGCAGCTTTATC 59.748 47.826 14.34 5.95 46.34 1.75
3250 4081 2.026356 TGGTCATAAGGCAGCAGCTTTA 60.026 45.455 8.09 8.09 44.88 1.85
3251 4082 1.272092 TGGTCATAAGGCAGCAGCTTT 60.272 47.619 3.51 3.51 43.13 3.51
3252 4083 0.329261 TGGTCATAAGGCAGCAGCTT 59.671 50.000 0.00 0.00 41.70 3.74
3253 4084 0.549950 ATGGTCATAAGGCAGCAGCT 59.450 50.000 0.00 0.00 41.70 4.24
3254 4085 0.666913 CATGGTCATAAGGCAGCAGC 59.333 55.000 0.00 0.00 41.10 5.25
3255 4086 2.219458 CTCATGGTCATAAGGCAGCAG 58.781 52.381 0.00 0.00 0.00 4.24
3256 4087 1.134007 CCTCATGGTCATAAGGCAGCA 60.134 52.381 0.00 0.00 0.00 4.41
3257 4088 1.133976 ACCTCATGGTCATAAGGCAGC 60.134 52.381 0.13 0.00 44.78 5.25
3270 4101 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
3271 4102 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
3272 4103 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
3273 4104 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
3274 4105 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
3275 4106 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
3276 4107 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
3277 4108 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
3278 4109 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
3279 4110 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
3280 4111 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
3281 4112 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3282 4113 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3283 4114 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3284 4115 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3285 4116 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3286 4117 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3287 4118 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3288 4119 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3289 4120 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
3290 4121 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
3291 4122 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
3292 4123 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3304 4135 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3305 4136 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3306 4137 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3307 4138 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3308 4139 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3309 4140 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3310 4141 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3311 4142 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3312 4143 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3313 4144 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3314 4145 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3315 4146 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3316 4147 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
3317 4148 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
3318 4149 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
3319 4150 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
3320 4151 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
3321 4152 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
3322 4153 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
3323 4154 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
3324 4155 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
3325 4156 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
3326 4157 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
3327 4158 4.097437 TCACTTTGGGTCTATAGTACGCAG 59.903 45.833 16.00 11.29 40.36 5.18
3328 4159 4.018490 TCACTTTGGGTCTATAGTACGCA 58.982 43.478 13.98 13.98 37.94 5.24
3329 4160 4.644103 TCACTTTGGGTCTATAGTACGC 57.356 45.455 0.00 6.13 0.00 4.42
3330 4161 5.450171 CGATCACTTTGGGTCTATAGTACG 58.550 45.833 0.00 0.00 0.00 3.67
3331 4162 5.533903 TCCGATCACTTTGGGTCTATAGTAC 59.466 44.000 0.00 0.00 0.00 2.73
3332 4163 5.533903 GTCCGATCACTTTGGGTCTATAGTA 59.466 44.000 0.00 0.00 0.00 1.82
3333 4164 4.341520 GTCCGATCACTTTGGGTCTATAGT 59.658 45.833 0.00 0.00 0.00 2.12
3334 4165 4.262079 GGTCCGATCACTTTGGGTCTATAG 60.262 50.000 0.00 0.00 0.00 1.31
3335 4166 3.640029 GGTCCGATCACTTTGGGTCTATA 59.360 47.826 0.00 0.00 0.00 1.31
3336 4167 2.434702 GGTCCGATCACTTTGGGTCTAT 59.565 50.000 0.00 0.00 0.00 1.98
3337 4168 1.829222 GGTCCGATCACTTTGGGTCTA 59.171 52.381 0.00 0.00 0.00 2.59
3338 4169 0.613777 GGTCCGATCACTTTGGGTCT 59.386 55.000 0.00 0.00 0.00 3.85
3339 4170 0.392595 GGGTCCGATCACTTTGGGTC 60.393 60.000 0.00 0.00 0.00 4.46
3340 4171 0.840722 AGGGTCCGATCACTTTGGGT 60.841 55.000 0.00 0.00 0.00 4.51
3341 4172 0.328258 AAGGGTCCGATCACTTTGGG 59.672 55.000 0.00 0.00 0.00 4.12
3342 4173 1.679032 GGAAGGGTCCGATCACTTTGG 60.679 57.143 0.00 0.00 33.05 3.28
3343 4174 1.679032 GGGAAGGGTCCGATCACTTTG 60.679 57.143 0.00 0.00 46.04 2.77
3344 4175 0.618981 GGGAAGGGTCCGATCACTTT 59.381 55.000 0.00 0.00 46.04 2.66
3345 4176 1.272554 GGGGAAGGGTCCGATCACTT 61.273 60.000 0.00 0.00 46.04 3.16
3346 4177 1.689582 GGGGAAGGGTCCGATCACT 60.690 63.158 0.00 0.00 46.04 3.41
3347 4178 2.908796 GGGGAAGGGTCCGATCAC 59.091 66.667 0.00 0.00 46.04 3.06
3353 4184 4.735599 AGGGTCGGGGAAGGGTCC 62.736 72.222 0.00 0.00 44.10 4.46
3354 4185 3.400054 CAGGGTCGGGGAAGGGTC 61.400 72.222 0.00 0.00 0.00 4.46
3373 4204 3.869272 CATGTCGCTCCCGCTTGC 61.869 66.667 0.00 0.00 0.00 4.01
3374 4205 3.869272 GCATGTCGCTCCCGCTTG 61.869 66.667 0.00 0.00 37.77 4.01
3375 4206 4.393155 TGCATGTCGCTCCCGCTT 62.393 61.111 0.00 0.00 43.06 4.68
3381 4212 2.279502 TAGTCCGGTGCATGTCGCTC 62.280 60.000 0.00 0.00 43.06 5.03
3382 4213 2.348104 TAGTCCGGTGCATGTCGCT 61.348 57.895 0.00 0.00 43.06 4.93
3383 4214 2.165301 GTAGTCCGGTGCATGTCGC 61.165 63.158 0.00 0.00 42.89 5.19
3384 4215 0.802222 CAGTAGTCCGGTGCATGTCG 60.802 60.000 0.00 0.00 0.00 4.35
3385 4216 0.246635 ACAGTAGTCCGGTGCATGTC 59.753 55.000 0.00 0.00 0.00 3.06
3386 4217 0.246635 GACAGTAGTCCGGTGCATGT 59.753 55.000 0.00 1.21 38.89 3.21
3387 4218 0.802222 CGACAGTAGTCCGGTGCATG 60.802 60.000 0.00 0.00 41.87 4.06
3388 4219 1.511305 CGACAGTAGTCCGGTGCAT 59.489 57.895 0.00 0.00 41.87 3.96
3389 4220 2.632544 CCGACAGTAGTCCGGTGCA 61.633 63.158 0.00 0.00 41.87 4.57
3390 4221 2.151049 AACCGACAGTAGTCCGGTGC 62.151 60.000 12.72 0.00 44.81 5.01
3391 4222 0.316204 AAACCGACAGTAGTCCGGTG 59.684 55.000 12.72 0.00 44.81 4.94
3392 4223 0.600057 GAAACCGACAGTAGTCCGGT 59.400 55.000 0.00 7.54 46.30 5.28
3393 4224 0.886563 AGAAACCGACAGTAGTCCGG 59.113 55.000 0.00 0.00 41.87 5.14
3394 4225 2.719426 AAGAAACCGACAGTAGTCCG 57.281 50.000 0.00 0.00 41.87 4.79
3395 4226 4.217118 TGACTAAGAAACCGACAGTAGTCC 59.783 45.833 0.00 0.00 41.87 3.85
3396 4227 5.368256 TGACTAAGAAACCGACAGTAGTC 57.632 43.478 0.00 0.00 41.46 2.59
3480 4315 4.731000 TGCAGAACGTTTAAATTGTTCGTG 59.269 37.500 20.99 19.52 45.04 4.35
3490 4325 2.225491 GGCTCATGTGCAGAACGTTTAA 59.775 45.455 20.43 0.00 34.04 1.52
3538 4373 3.755905 TCAGTTTCACAGAAAACAGTGCA 59.244 39.130 2.73 0.00 40.77 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.