Multiple sequence alignment - TraesCS6B01G075100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G075100 chr6B 100.000 4313 0 0 1 4313 51578697 51574385 0.000000e+00 7965.0
1 TraesCS6B01G075100 chr6B 86.332 2151 177 52 851 2938 51611774 51613870 0.000000e+00 2235.0
2 TraesCS6B01G075100 chr6B 78.767 1281 204 38 1046 2290 51912422 51913670 0.000000e+00 797.0
3 TraesCS6B01G075100 chr6B 89.420 586 48 8 3394 3967 51614557 51615140 0.000000e+00 726.0
4 TraesCS6B01G075100 chr6B 83.712 528 66 11 2143 2657 51913697 51914217 8.390000e-132 481.0
5 TraesCS6B01G075100 chr6B 94.470 217 12 0 2968 3184 51613873 51614089 6.910000e-88 335.0
6 TraesCS6B01G075100 chr6B 94.975 199 10 0 3209 3407 51614201 51614399 3.240000e-81 313.0
7 TraesCS6B01G075100 chr6B 85.463 227 21 5 3972 4196 51654468 51654684 4.340000e-55 226.0
8 TraesCS6B01G075100 chr6B 81.333 225 31 8 2295 2514 426739479 426739261 5.730000e-39 172.0
9 TraesCS6B01G075100 chr6B 89.130 46 5 0 3995 4040 56053383 56053428 1.680000e-04 58.4
10 TraesCS6B01G075100 chr6A 88.346 3029 248 59 856 3807 30137231 30134231 0.000000e+00 3541.0
11 TraesCS6B01G075100 chr6A 94.993 2097 95 7 849 2941 30041873 30039783 0.000000e+00 3282.0
12 TraesCS6B01G075100 chr6A 92.028 853 65 2 2968 3820 30039783 30038934 0.000000e+00 1195.0
13 TraesCS6B01G075100 chr6A 79.489 1448 231 38 1002 2412 29495933 29497351 0.000000e+00 968.0
14 TraesCS6B01G075100 chr6A 76.462 684 117 30 1856 2514 29968802 29968138 8.940000e-87 331.0
15 TraesCS6B01G075100 chr6A 83.784 259 15 7 3937 4193 30038873 30038640 2.020000e-53 220.0
16 TraesCS6B01G075100 chr6A 80.110 181 11 12 3937 4117 30134153 30133998 1.270000e-20 111.0
17 TraesCS6B01G075100 chr6A 89.130 46 5 0 3995 4040 31372299 31372344 1.680000e-04 58.4
18 TraesCS6B01G075100 chr6D 86.772 2147 190 46 855 2938 27840111 27842226 0.000000e+00 2305.0
19 TraesCS6B01G075100 chr6D 89.957 1384 80 22 240 1604 27816532 27815189 0.000000e+00 1731.0
20 TraesCS6B01G075100 chr6D 93.097 1159 55 5 1598 2753 27793044 27791908 0.000000e+00 1674.0
21 TraesCS6B01G075100 chr6D 93.794 854 47 4 2968 3820 27842229 27843077 0.000000e+00 1279.0
22 TraesCS6B01G075100 chr6D 94.526 822 43 2 2982 3803 27789601 27788782 0.000000e+00 1267.0
23 TraesCS6B01G075100 chr6D 79.585 1396 231 32 1035 2406 28411429 28410064 0.000000e+00 950.0
24 TraesCS6B01G075100 chr6D 77.907 1290 211 48 1041 2290 28305135 28303880 0.000000e+00 736.0
25 TraesCS6B01G075100 chr6D 75.723 1557 253 73 1033 2514 27860108 27861614 0.000000e+00 665.0
26 TraesCS6B01G075100 chr6D 94.949 297 15 0 3820 4116 27788511 27788215 2.350000e-127 466.0
27 TraesCS6B01G075100 chr6D 96.535 202 5 1 4114 4313 27776171 27775970 2.490000e-87 333.0
28 TraesCS6B01G075100 chr6D 91.736 242 14 4 1 241 27816800 27816564 8.940000e-87 331.0
29 TraesCS6B01G075100 chr6D 87.160 257 21 3 3937 4193 27843138 27843382 9.130000e-72 281.0
30 TraesCS6B01G075100 chr6D 82.707 266 42 3 2525 2789 28409981 28409719 2.590000e-57 233.0
31 TraesCS6B01G075100 chr6D 90.286 175 11 4 2815 2983 27789934 27789760 1.560000e-54 224.0
32 TraesCS6B01G075100 chr6D 94.872 78 3 1 2757 2833 27791870 27791793 2.110000e-23 121.0
33 TraesCS6B01G075100 chrUn 79.900 1398 229 27 1035 2406 286651798 286650427 0.000000e+00 977.0
34 TraesCS6B01G075100 chrUn 89.130 46 5 0 3995 4040 103937606 103937651 1.680000e-04 58.4
35 TraesCS6B01G075100 chr4A 82.773 238 30 10 2280 2512 720042523 720042754 7.310000e-48 202.0
36 TraesCS6B01G075100 chr7B 82.639 144 20 5 281 423 111326240 111326101 5.860000e-24 122.0
37 TraesCS6B01G075100 chr1B 79.882 169 28 6 258 423 432380042 432379877 7.580000e-23 119.0
38 TraesCS6B01G075100 chr3A 76.238 202 36 9 259 455 128163117 128162923 3.550000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G075100 chr6B 51574385 51578697 4312 True 7965.000000 7965 100.000000 1 4313 1 chr6B.!!$R1 4312
1 TraesCS6B01G075100 chr6B 51611774 51615140 3366 False 902.250000 2235 91.299250 851 3967 4 chr6B.!!$F3 3116
2 TraesCS6B01G075100 chr6B 51912422 51914217 1795 False 639.000000 797 81.239500 1046 2657 2 chr6B.!!$F4 1611
3 TraesCS6B01G075100 chr6A 30133998 30137231 3233 True 1826.000000 3541 84.228000 856 4117 2 chr6A.!!$R3 3261
4 TraesCS6B01G075100 chr6A 30038640 30041873 3233 True 1565.666667 3282 90.268333 849 4193 3 chr6A.!!$R2 3344
5 TraesCS6B01G075100 chr6A 29495933 29497351 1418 False 968.000000 968 79.489000 1002 2412 1 chr6A.!!$F1 1410
6 TraesCS6B01G075100 chr6A 29968138 29968802 664 True 331.000000 331 76.462000 1856 2514 1 chr6A.!!$R1 658
7 TraesCS6B01G075100 chr6D 27840111 27843382 3271 False 1288.333333 2305 89.242000 855 4193 3 chr6D.!!$F2 3338
8 TraesCS6B01G075100 chr6D 27815189 27816800 1611 True 1031.000000 1731 90.846500 1 1604 2 chr6D.!!$R4 1603
9 TraesCS6B01G075100 chr6D 27788215 27793044 4829 True 750.400000 1674 93.546000 1598 4116 5 chr6D.!!$R3 2518
10 TraesCS6B01G075100 chr6D 28303880 28305135 1255 True 736.000000 736 77.907000 1041 2290 1 chr6D.!!$R2 1249
11 TraesCS6B01G075100 chr6D 27860108 27861614 1506 False 665.000000 665 75.723000 1033 2514 1 chr6D.!!$F1 1481
12 TraesCS6B01G075100 chr6D 28409719 28411429 1710 True 591.500000 950 81.146000 1035 2789 2 chr6D.!!$R5 1754
13 TraesCS6B01G075100 chrUn 286650427 286651798 1371 True 977.000000 977 79.900000 1035 2406 1 chrUn.!!$R1 1371

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 834 0.028242 CGCTAAAACCACACGCACAA 59.972 50.0 0.00 0.00 0.00 3.33 F
1029 1109 0.833287 GCATAAGCTGTGAGGAGGGA 59.167 55.0 3.69 0.00 37.91 4.20 F
2400 2805 0.389025 GTTTCTGTGGCCAAGTTGGG 59.611 55.0 23.36 6.41 38.19 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2377 2781 1.972872 ACTTGGCCACAGAAACAGAG 58.027 50.000 3.88 0.0 0.00 3.35 R
2906 5291 1.543429 GGACTTACCACTTGCAGCAGT 60.543 52.381 0.00 0.0 38.79 4.40 R
3336 5977 1.203100 AGCAAAGAAGCCCATTCCTGT 60.203 47.619 0.00 0.0 38.84 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 9.569167 GGCTATACCTAAGAAACAAATTTTCAC 57.431 33.333 0.00 0.00 34.51 3.18
57 59 8.017418 ACCTAAGAAACAAATTTTCACATCCA 57.983 30.769 0.00 0.00 0.00 3.41
61 63 8.735692 AAGAAACAAATTTTCACATCCACATT 57.264 26.923 0.00 0.00 0.00 2.71
86 88 1.246056 AACCATGTGCGCTCATGCTT 61.246 50.000 35.39 28.38 42.44 3.91
87 89 0.392863 ACCATGTGCGCTCATGCTTA 60.393 50.000 35.39 7.11 42.44 3.09
143 145 1.722011 AATCTCAAGTGTTACGGGCG 58.278 50.000 0.00 0.00 0.00 6.13
166 168 2.070783 GAGTATCTACTCCCGAGCTCG 58.929 57.143 29.06 29.06 45.33 5.03
169 171 2.279935 ATCTACTCCCGAGCTCGAAT 57.720 50.000 36.59 19.92 43.02 3.34
312 348 9.437045 CCTATTTTTGAAAACATTTTGAAGTGC 57.563 29.630 0.00 0.00 0.00 4.40
316 352 7.846644 TTTGAAAACATTTTGAAGTGCTGAT 57.153 28.000 0.00 0.00 0.00 2.90
340 377 2.964464 TGTTTTGTGCCATGACTTCCAT 59.036 40.909 0.00 0.00 35.44 3.41
362 399 5.956068 TGAATGTCATTCCGTGATGAAAA 57.044 34.783 20.41 0.00 39.48 2.29
367 404 7.816945 ATGTCATTCCGTGATGAAAATTTTC 57.183 32.000 21.60 21.60 39.48 2.29
417 454 8.424133 AGTTTGCCTCAAAACTATTTCAGAATT 58.576 29.630 0.62 0.00 46.10 2.17
419 456 7.288810 TGCCTCAAAACTATTTCAGAATTGT 57.711 32.000 0.00 0.00 33.58 2.71
420 457 7.725251 TGCCTCAAAACTATTTCAGAATTGTT 58.275 30.769 0.00 0.00 41.02 2.83
474 512 6.126883 ACTGTTTATCCCGAGGTCATTTGATA 60.127 38.462 0.00 0.00 0.00 2.15
476 514 7.287061 TGTTTATCCCGAGGTCATTTGATATT 58.713 34.615 0.00 0.00 0.00 1.28
481 519 4.067896 CCGAGGTCATTTGATATTGGGAG 58.932 47.826 0.00 0.00 0.00 4.30
491 529 7.779798 TCATTTGATATTGGGAGTAAAAGAGGG 59.220 37.037 0.00 0.00 0.00 4.30
492 530 5.048846 TGATATTGGGAGTAAAAGAGGGC 57.951 43.478 0.00 0.00 0.00 5.19
493 531 4.726825 TGATATTGGGAGTAAAAGAGGGCT 59.273 41.667 0.00 0.00 0.00 5.19
494 532 5.193728 TGATATTGGGAGTAAAAGAGGGCTT 59.806 40.000 0.00 0.00 35.37 4.35
495 533 3.895704 TTGGGAGTAAAAGAGGGCTTT 57.104 42.857 0.00 0.00 45.95 3.51
496 534 3.434940 TGGGAGTAAAAGAGGGCTTTC 57.565 47.619 0.00 0.00 43.32 2.62
497 535 2.290071 TGGGAGTAAAAGAGGGCTTTCG 60.290 50.000 0.00 0.00 43.32 3.46
498 536 2.027469 GGGAGTAAAAGAGGGCTTTCGA 60.027 50.000 0.00 0.00 43.32 3.71
499 537 3.558533 GGGAGTAAAAGAGGGCTTTCGAA 60.559 47.826 0.00 0.00 43.32 3.71
500 538 3.685272 GGAGTAAAAGAGGGCTTTCGAAG 59.315 47.826 0.00 0.00 43.32 3.79
501 539 4.562963 GGAGTAAAAGAGGGCTTTCGAAGA 60.563 45.833 0.00 0.00 43.32 2.87
502 540 4.570930 AGTAAAAGAGGGCTTTCGAAGAG 58.429 43.478 0.00 0.55 43.32 2.85
503 541 3.493767 AAAAGAGGGCTTTCGAAGAGT 57.506 42.857 0.00 0.00 43.32 3.24
504 542 3.493767 AAAGAGGGCTTTCGAAGAGTT 57.506 42.857 0.00 0.00 40.19 3.01
505 543 3.493767 AAGAGGGCTTTCGAAGAGTTT 57.506 42.857 0.00 0.00 38.43 2.66
506 544 3.493767 AGAGGGCTTTCGAAGAGTTTT 57.506 42.857 0.00 0.00 38.43 2.43
507 545 3.821748 AGAGGGCTTTCGAAGAGTTTTT 58.178 40.909 0.00 0.00 38.43 1.94
535 573 4.553323 GGCTTTCGAAGAGTTACACACTA 58.447 43.478 0.00 0.00 38.43 2.74
550 588 5.489792 ACACACTACAGTCAAAGATCCAT 57.510 39.130 0.00 0.00 0.00 3.41
571 609 0.179124 CACCGAGCTAGAAGTCAGGC 60.179 60.000 0.00 0.00 0.00 4.85
598 636 4.499037 ACCTTCGTTTAGCATTTGTTCC 57.501 40.909 0.00 0.00 0.00 3.62
603 641 4.385825 TCGTTTAGCATTTGTTCCTGTCT 58.614 39.130 0.00 0.00 0.00 3.41
615 653 5.414789 TGTTCCTGTCTATCGGAATTCAA 57.585 39.130 7.93 0.00 41.04 2.69
625 663 6.909357 GTCTATCGGAATTCAAAAGCAAGATG 59.091 38.462 7.93 0.00 0.00 2.90
667 705 7.545265 AGCGAAAATATTAGAAAAGCAAATGCA 59.455 29.630 8.28 0.00 45.16 3.96
755 794 7.728847 GGAAACCACAAAGATTAAGCAAATT 57.271 32.000 0.00 0.00 0.00 1.82
789 828 4.034742 TCTGAAAAGTCGCTAAAACCACAC 59.965 41.667 0.00 0.00 0.00 3.82
794 833 0.810426 TCGCTAAAACCACACGCACA 60.810 50.000 0.00 0.00 0.00 4.57
795 834 0.028242 CGCTAAAACCACACGCACAA 59.972 50.000 0.00 0.00 0.00 3.33
796 835 1.532090 CGCTAAAACCACACGCACAAA 60.532 47.619 0.00 0.00 0.00 2.83
797 836 2.531206 GCTAAAACCACACGCACAAAA 58.469 42.857 0.00 0.00 0.00 2.44
798 837 2.533942 GCTAAAACCACACGCACAAAAG 59.466 45.455 0.00 0.00 0.00 2.27
799 838 3.732471 GCTAAAACCACACGCACAAAAGA 60.732 43.478 0.00 0.00 0.00 2.52
837 876 2.159517 GCAAATGCGTTTCTGTAGAGGG 60.160 50.000 0.00 0.00 0.00 4.30
838 877 3.334691 CAAATGCGTTTCTGTAGAGGGA 58.665 45.455 0.00 0.00 0.00 4.20
839 878 2.969628 ATGCGTTTCTGTAGAGGGAG 57.030 50.000 0.00 0.00 0.00 4.30
931 986 0.889186 ATGGTGTGTTCGTGGGCTTC 60.889 55.000 0.00 0.00 0.00 3.86
1029 1109 0.833287 GCATAAGCTGTGAGGAGGGA 59.167 55.000 3.69 0.00 37.91 4.20
1173 1271 1.684049 CTCCGACCCAGCCTTCTCT 60.684 63.158 0.00 0.00 0.00 3.10
1305 1418 2.258013 CGGGCGTTTCTCCTTGCAA 61.258 57.895 0.00 0.00 0.00 4.08
1306 1419 1.581447 GGGCGTTTCTCCTTGCAAG 59.419 57.895 19.93 19.93 0.00 4.01
1316 1429 2.048222 CTTGCAAGCCGACCTCGA 60.048 61.111 14.65 0.00 43.02 4.04
1954 2161 0.907486 CCTGGATTCAGAGGAGCACA 59.093 55.000 1.24 0.00 43.49 4.57
2046 2253 2.028203 TGTCCAGATTGAGTCATTGCGA 60.028 45.455 0.00 0.00 0.00 5.10
2080 2287 1.999048 CGACACCTACAAATGGCGTA 58.001 50.000 0.00 0.00 42.55 4.42
2377 2781 0.453390 GTTTAGCTCATGCCACCAGC 59.547 55.000 0.00 0.00 40.80 4.85
2400 2805 0.389025 GTTTCTGTGGCCAAGTTGGG 59.611 55.000 23.36 6.41 38.19 4.12
2472 2896 8.664798 TGTTGACATATGCAAGAACTGTATAAC 58.335 33.333 1.58 1.33 36.37 1.89
2485 2909 6.376581 AGAACTGTATAACGGTAGTGCTAGTT 59.623 38.462 0.00 0.00 36.53 2.24
2491 2915 8.294577 TGTATAACGGTAGTGCTAGTTCATATG 58.705 37.037 0.00 0.00 0.00 1.78
2559 3011 7.467267 GCACCATTCTGTTGTATTGTCGATAAT 60.467 37.037 12.28 12.28 0.00 1.28
2643 3104 2.851195 TGAAGTCAGAGTTGGGAAAGC 58.149 47.619 0.00 0.00 0.00 3.51
2724 3185 6.263168 CAGTGGGAGACAACTACTTGAAAAAT 59.737 38.462 0.00 0.00 0.00 1.82
2740 3201 7.223387 ACTTGAAAAATTAGCTTGAAGCAACTG 59.777 33.333 20.45 0.00 45.56 3.16
2747 3208 9.933723 AAATTAGCTTGAAGCAACTGAAATATT 57.066 25.926 20.45 0.00 45.56 1.28
2800 3299 8.615878 TGAGAAGCTTAAAGCAGTTATTGTTA 57.384 30.769 0.00 0.00 45.56 2.41
3110 5655 7.359598 CGAATTAACTGTCTTCCACTCTTTCTG 60.360 40.741 0.00 0.00 0.00 3.02
3155 5700 8.806146 ACTGTTATCTTTTTCCAATAATGCTGT 58.194 29.630 0.00 0.00 0.00 4.40
3260 5901 7.465353 TGCAACTTCATCTTTTCCATGAATA 57.535 32.000 0.00 0.00 39.10 1.75
3287 5928 6.148811 ACAGTACAAATCGGTTTGACTAATGG 59.851 38.462 27.19 14.60 46.03 3.16
3324 5965 6.620877 ACAGGTATCTAGAATTGTGTTCCA 57.379 37.500 0.00 0.00 0.00 3.53
3336 5977 4.350368 TTGTGTTCCAGTTGCTGAGATA 57.650 40.909 0.00 0.00 32.44 1.98
3394 6035 7.764141 TTTTGACAATTTCTCATGGAGATCA 57.236 32.000 0.00 0.00 38.56 2.92
3461 6273 5.649970 TTTAAGTGGTCAACTTCCCCTTA 57.350 39.130 0.00 0.00 46.60 2.69
3571 6383 6.813152 GTGTGGTTCATTTGCTATATGCTTTT 59.187 34.615 0.00 0.00 43.37 2.27
3718 6530 7.053498 TGTCATGCTGGAAATAATAAGTGCTA 58.947 34.615 0.00 0.00 0.00 3.49
3775 6587 9.295825 ACATACAAGTTTGATTTATCAGGTTCA 57.704 29.630 0.00 0.00 38.19 3.18
3791 6603 5.939883 TCAGGTTCAACTGAATTCTGGTATG 59.060 40.000 15.76 11.40 44.03 2.39
3811 6863 2.836372 TGGTGCAGACTGATGAAGAGAT 59.164 45.455 6.65 0.00 0.00 2.75
3861 6928 5.032846 TCATTCAGTCTTCCTACCCAATCT 58.967 41.667 0.00 0.00 0.00 2.40
3926 6993 7.596749 ATTCTGTTCAGTTATCCTTAACACG 57.403 36.000 0.00 0.00 40.20 4.49
3970 7037 6.785337 TCCAAGATTCAGTTACCGAGAATA 57.215 37.500 0.00 0.00 32.51 1.75
4050 7117 4.410492 AGTTTAGCATTTCACTGAAGCG 57.590 40.909 0.00 0.00 0.00 4.68
4071 7138 1.455822 TTTCCCTGTCCATGGAACCT 58.544 50.000 18.20 0.00 40.27 3.50
4117 7184 5.298989 TGGCTGGAGAAACTACTAACAAA 57.701 39.130 0.00 0.00 0.00 2.83
4196 7265 9.650539 GTGATAGACTAGCACATGAAATATGAT 57.349 33.333 22.77 0.00 44.06 2.45
4200 7269 8.081208 AGACTAGCACATGAAATATGATTTCG 57.919 34.615 0.00 0.00 0.00 3.46
4201 7270 7.172190 AGACTAGCACATGAAATATGATTTCGG 59.828 37.037 0.00 5.16 0.00 4.30
4202 7271 6.992123 ACTAGCACATGAAATATGATTTCGGA 59.008 34.615 0.00 0.00 0.00 4.55
4203 7272 6.889301 AGCACATGAAATATGATTTCGGAT 57.111 33.333 0.00 0.00 0.00 4.18
4204 7273 6.675026 AGCACATGAAATATGATTTCGGATG 58.325 36.000 0.00 8.35 0.00 3.51
4205 7274 6.487668 AGCACATGAAATATGATTTCGGATGA 59.512 34.615 14.41 0.00 0.00 2.92
4206 7275 7.013559 AGCACATGAAATATGATTTCGGATGAA 59.986 33.333 14.41 0.00 0.00 2.57
4207 7276 7.811236 GCACATGAAATATGATTTCGGATGAAT 59.189 33.333 14.41 0.00 33.20 2.57
4215 7284 8.797350 ATATGATTTCGGATGAATAATCTGCA 57.203 30.769 0.00 0.00 40.95 4.41
4216 7285 6.549912 TGATTTCGGATGAATAATCTGCAG 57.450 37.500 7.63 7.63 40.95 4.41
4217 7286 4.818534 TTTCGGATGAATAATCTGCAGC 57.181 40.909 9.47 0.00 40.95 5.25
4218 7287 3.473923 TCGGATGAATAATCTGCAGCA 57.526 42.857 9.47 0.00 40.95 4.41
4219 7288 4.011966 TCGGATGAATAATCTGCAGCAT 57.988 40.909 9.47 5.32 40.95 3.79
4220 7289 5.151297 TCGGATGAATAATCTGCAGCATA 57.849 39.130 9.47 4.72 40.95 3.14
4221 7290 5.173664 TCGGATGAATAATCTGCAGCATAG 58.826 41.667 9.47 3.98 40.95 2.23
4222 7291 4.934001 CGGATGAATAATCTGCAGCATAGT 59.066 41.667 9.47 3.41 34.88 2.12
4223 7292 5.063186 CGGATGAATAATCTGCAGCATAGTC 59.937 44.000 9.47 13.09 34.88 2.59
4224 7293 5.353678 GGATGAATAATCTGCAGCATAGTCC 59.646 44.000 9.47 5.25 35.43 3.85
4225 7294 5.294734 TGAATAATCTGCAGCATAGTCCA 57.705 39.130 9.47 0.00 0.00 4.02
4226 7295 5.683681 TGAATAATCTGCAGCATAGTCCAA 58.316 37.500 9.47 0.00 0.00 3.53
4227 7296 6.121590 TGAATAATCTGCAGCATAGTCCAAA 58.878 36.000 9.47 0.00 0.00 3.28
4228 7297 6.774170 TGAATAATCTGCAGCATAGTCCAAAT 59.226 34.615 9.47 0.00 0.00 2.32
4229 7298 4.913335 AATCTGCAGCATAGTCCAAATG 57.087 40.909 9.47 0.00 0.00 2.32
4230 7299 3.354948 TCTGCAGCATAGTCCAAATGT 57.645 42.857 9.47 0.00 0.00 2.71
4231 7300 3.689347 TCTGCAGCATAGTCCAAATGTT 58.311 40.909 9.47 0.00 0.00 2.71
4232 7301 4.842574 TCTGCAGCATAGTCCAAATGTTA 58.157 39.130 9.47 0.00 0.00 2.41
4233 7302 5.439721 TCTGCAGCATAGTCCAAATGTTAT 58.560 37.500 9.47 0.00 0.00 1.89
4234 7303 5.297527 TCTGCAGCATAGTCCAAATGTTATG 59.702 40.000 9.47 0.00 0.00 1.90
4235 7304 5.192176 TGCAGCATAGTCCAAATGTTATGA 58.808 37.500 0.00 0.00 0.00 2.15
4236 7305 5.829391 TGCAGCATAGTCCAAATGTTATGAT 59.171 36.000 0.00 0.00 0.00 2.45
4237 7306 6.147581 GCAGCATAGTCCAAATGTTATGATG 58.852 40.000 4.70 4.70 40.80 3.07
4238 7307 6.016860 GCAGCATAGTCCAAATGTTATGATGA 60.017 38.462 11.43 0.00 40.49 2.92
4239 7308 7.582352 CAGCATAGTCCAAATGTTATGATGAG 58.418 38.462 3.29 0.00 40.49 2.90
4240 7309 7.228108 CAGCATAGTCCAAATGTTATGATGAGT 59.772 37.037 3.29 0.00 40.49 3.41
4241 7310 7.776969 AGCATAGTCCAAATGTTATGATGAGTT 59.223 33.333 0.00 0.00 0.00 3.01
4242 7311 7.859377 GCATAGTCCAAATGTTATGATGAGTTG 59.141 37.037 0.00 0.00 0.00 3.16
4243 7312 9.112725 CATAGTCCAAATGTTATGATGAGTTGA 57.887 33.333 0.00 0.00 0.00 3.18
4244 7313 7.621428 AGTCCAAATGTTATGATGAGTTGAG 57.379 36.000 0.00 0.00 0.00 3.02
4245 7314 6.600822 AGTCCAAATGTTATGATGAGTTGAGG 59.399 38.462 0.00 0.00 0.00 3.86
4246 7315 6.375455 GTCCAAATGTTATGATGAGTTGAGGT 59.625 38.462 0.00 0.00 0.00 3.85
4247 7316 6.947733 TCCAAATGTTATGATGAGTTGAGGTT 59.052 34.615 0.00 0.00 0.00 3.50
4248 7317 7.121168 TCCAAATGTTATGATGAGTTGAGGTTC 59.879 37.037 0.00 0.00 0.00 3.62
4249 7318 7.094248 CCAAATGTTATGATGAGTTGAGGTTCA 60.094 37.037 0.00 0.00 0.00 3.18
4250 7319 8.298854 CAAATGTTATGATGAGTTGAGGTTCAA 58.701 33.333 0.00 0.00 33.32 2.69
4251 7320 8.408043 AATGTTATGATGAGTTGAGGTTCAAA 57.592 30.769 0.00 0.00 38.22 2.69
4252 7321 7.815840 TGTTATGATGAGTTGAGGTTCAAAA 57.184 32.000 0.00 0.00 38.22 2.44
4253 7322 7.648142 TGTTATGATGAGTTGAGGTTCAAAAC 58.352 34.615 0.00 0.00 38.22 2.43
4254 7323 7.502226 TGTTATGATGAGTTGAGGTTCAAAACT 59.498 33.333 0.00 0.00 38.22 2.66
4255 7324 6.966534 ATGATGAGTTGAGGTTCAAAACTT 57.033 33.333 0.00 0.00 38.22 2.66
4256 7325 6.377327 TGATGAGTTGAGGTTCAAAACTTC 57.623 37.500 0.00 0.00 38.22 3.01
4257 7326 4.875544 TGAGTTGAGGTTCAAAACTTCG 57.124 40.909 0.00 0.00 40.08 3.79
4258 7327 4.509616 TGAGTTGAGGTTCAAAACTTCGA 58.490 39.130 0.00 0.00 40.08 3.71
4259 7328 5.123227 TGAGTTGAGGTTCAAAACTTCGAT 58.877 37.500 0.00 0.00 40.08 3.59
4260 7329 5.236478 TGAGTTGAGGTTCAAAACTTCGATC 59.764 40.000 0.00 0.00 40.08 3.69
4261 7330 5.368989 AGTTGAGGTTCAAAACTTCGATCT 58.631 37.500 0.00 0.00 40.08 2.75
4262 7331 5.467063 AGTTGAGGTTCAAAACTTCGATCTC 59.533 40.000 0.00 0.00 40.08 2.75
4263 7332 4.315803 TGAGGTTCAAAACTTCGATCTCC 58.684 43.478 0.00 0.00 40.08 3.71
4264 7333 4.202315 TGAGGTTCAAAACTTCGATCTCCA 60.202 41.667 0.00 0.00 40.08 3.86
4265 7334 4.714632 AGGTTCAAAACTTCGATCTCCAA 58.285 39.130 0.00 0.00 0.00 3.53
4266 7335 5.130350 AGGTTCAAAACTTCGATCTCCAAA 58.870 37.500 0.00 0.00 0.00 3.28
4267 7336 5.592688 AGGTTCAAAACTTCGATCTCCAAAA 59.407 36.000 0.00 0.00 0.00 2.44
4268 7337 5.685954 GGTTCAAAACTTCGATCTCCAAAAC 59.314 40.000 0.00 0.00 0.00 2.43
4269 7338 6.262601 GTTCAAAACTTCGATCTCCAAAACA 58.737 36.000 0.00 0.00 0.00 2.83
4270 7339 6.633500 TCAAAACTTCGATCTCCAAAACAT 57.367 33.333 0.00 0.00 0.00 2.71
4271 7340 6.437928 TCAAAACTTCGATCTCCAAAACATG 58.562 36.000 0.00 0.00 0.00 3.21
4272 7341 6.262049 TCAAAACTTCGATCTCCAAAACATGA 59.738 34.615 0.00 0.00 0.00 3.07
4273 7342 6.824305 AAACTTCGATCTCCAAAACATGAT 57.176 33.333 0.00 0.00 0.00 2.45
4274 7343 6.428385 AACTTCGATCTCCAAAACATGATC 57.572 37.500 0.00 0.00 33.88 2.92
4275 7344 5.738909 ACTTCGATCTCCAAAACATGATCT 58.261 37.500 0.00 0.00 34.75 2.75
4276 7345 5.814705 ACTTCGATCTCCAAAACATGATCTC 59.185 40.000 0.00 0.00 34.75 2.75
4277 7346 5.604758 TCGATCTCCAAAACATGATCTCT 57.395 39.130 0.00 0.00 34.75 3.10
4278 7347 6.715347 TCGATCTCCAAAACATGATCTCTA 57.285 37.500 0.00 0.00 34.75 2.43
4279 7348 6.507900 TCGATCTCCAAAACATGATCTCTAC 58.492 40.000 0.00 0.00 34.75 2.59
4280 7349 6.322456 TCGATCTCCAAAACATGATCTCTACT 59.678 38.462 0.00 0.00 34.75 2.57
4281 7350 6.983307 CGATCTCCAAAACATGATCTCTACTT 59.017 38.462 0.00 0.00 34.75 2.24
4282 7351 8.138074 CGATCTCCAAAACATGATCTCTACTTA 58.862 37.037 0.00 0.00 34.75 2.24
4283 7352 9.995003 GATCTCCAAAACATGATCTCTACTTAT 57.005 33.333 0.00 0.00 34.27 1.73
4285 7354 9.823647 TCTCCAAAACATGATCTCTACTTATTC 57.176 33.333 0.00 0.00 0.00 1.75
4286 7355 9.605275 CTCCAAAACATGATCTCTACTTATTCA 57.395 33.333 0.00 0.00 0.00 2.57
4287 7356 9.383519 TCCAAAACATGATCTCTACTTATTCAC 57.616 33.333 0.00 0.00 0.00 3.18
4288 7357 9.166173 CCAAAACATGATCTCTACTTATTCACA 57.834 33.333 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 7.926018 GTGGATGTGAAAATTTGTTTCTTAGGT 59.074 33.333 0.00 0.00 0.00 3.08
34 36 8.870160 TGTGGATGTGAAAATTTGTTTCTTAG 57.130 30.769 0.00 0.00 0.00 2.18
61 63 3.717400 TGAGCGCACATGGTTTAAAAA 57.283 38.095 11.47 0.00 0.00 1.94
117 119 3.423123 CGTAACACTTGAGATTTCGGCAC 60.423 47.826 0.00 0.00 0.00 5.01
120 122 2.671396 CCCGTAACACTTGAGATTTCGG 59.329 50.000 0.00 0.00 36.00 4.30
299 335 7.614124 AAACAAAATCAGCACTTCAAAATGT 57.386 28.000 0.00 0.00 0.00 2.71
340 377 5.956068 TTTTCATCACGGAATGACATTCA 57.044 34.783 25.59 9.05 41.24 2.57
349 386 8.885494 ATTTCTTGAAAATTTTCATCACGGAA 57.115 26.923 29.13 22.64 45.65 4.30
351 388 9.190858 TGTATTTCTTGAAAATTTTCATCACGG 57.809 29.630 29.13 17.92 45.65 4.94
367 404 8.643752 ACTTTGACAAACGTTTTGTATTTCTTG 58.356 29.630 11.66 0.00 31.96 3.02
371 408 7.742525 GCAAACTTTGACAAACGTTTTGTATTT 59.257 29.630 11.66 3.54 31.96 1.40
372 409 7.230914 GCAAACTTTGACAAACGTTTTGTATT 58.769 30.769 11.66 0.00 31.96 1.89
382 419 5.408299 AGTTTTGAGGCAAACTTTGACAAAC 59.592 36.000 10.08 10.84 42.71 2.93
439 476 6.183360 CCTCGGGATAAACAGTAAAATGGAAC 60.183 42.308 0.00 0.00 0.00 3.62
443 480 5.878116 TGACCTCGGGATAAACAGTAAAATG 59.122 40.000 0.00 0.00 0.00 2.32
455 493 5.280470 CCCAATATCAAATGACCTCGGGATA 60.280 44.000 0.00 0.00 31.21 2.59
456 494 4.507335 CCCAATATCAAATGACCTCGGGAT 60.507 45.833 0.00 0.00 31.21 3.85
474 512 4.344978 GAAAGCCCTCTTTTACTCCCAAT 58.655 43.478 0.00 0.00 42.24 3.16
476 514 2.290071 CGAAAGCCCTCTTTTACTCCCA 60.290 50.000 0.00 0.00 42.24 4.37
481 519 4.316645 ACTCTTCGAAAGCCCTCTTTTAC 58.683 43.478 0.00 0.00 42.24 2.01
505 543 2.940410 ACTCTTCGAAAGCCGTCAAAAA 59.060 40.909 0.00 0.00 39.75 1.94
506 544 2.557317 ACTCTTCGAAAGCCGTCAAAA 58.443 42.857 0.00 0.00 39.75 2.44
507 545 2.234300 ACTCTTCGAAAGCCGTCAAA 57.766 45.000 0.00 0.00 39.75 2.69
508 546 2.234300 AACTCTTCGAAAGCCGTCAA 57.766 45.000 0.00 0.00 39.75 3.18
509 547 2.034939 TGTAACTCTTCGAAAGCCGTCA 59.965 45.455 0.00 0.00 39.75 4.35
510 548 2.407696 GTGTAACTCTTCGAAAGCCGTC 59.592 50.000 0.00 0.00 39.75 4.79
511 549 2.223876 TGTGTAACTCTTCGAAAGCCGT 60.224 45.455 0.00 0.00 38.04 5.68
512 550 2.155155 GTGTGTAACTCTTCGAAAGCCG 59.845 50.000 0.00 0.00 38.04 5.52
513 551 3.391049 AGTGTGTAACTCTTCGAAAGCC 58.609 45.455 0.00 0.00 37.38 4.35
514 552 4.980434 TGTAGTGTGTAACTCTTCGAAAGC 59.020 41.667 0.00 0.00 41.51 3.51
535 573 2.440409 GGTGCATGGATCTTTGACTGT 58.560 47.619 0.00 0.00 0.00 3.55
550 588 0.528017 CTGACTTCTAGCTCGGTGCA 59.472 55.000 4.74 0.00 45.94 4.57
571 609 1.231958 TGCTAAACGAAGGTTGCCCG 61.232 55.000 0.00 0.00 36.25 6.13
582 620 4.749245 AGACAGGAACAAATGCTAAACG 57.251 40.909 0.00 0.00 0.00 3.60
584 622 5.584649 CCGATAGACAGGAACAAATGCTAAA 59.415 40.000 0.00 0.00 39.76 1.85
598 636 5.801350 TGCTTTTGAATTCCGATAGACAG 57.199 39.130 2.27 0.00 39.76 3.51
603 641 6.554419 CACATCTTGCTTTTGAATTCCGATA 58.446 36.000 2.27 0.00 0.00 2.92
625 663 6.689178 TTTTCGCTTCAATTTTCATAGCAC 57.311 33.333 0.00 0.00 0.00 4.40
699 738 4.943705 TCAAGCTTTTCTGGATCATGGTAC 59.056 41.667 0.00 0.00 0.00 3.34
700 739 5.178096 TCAAGCTTTTCTGGATCATGGTA 57.822 39.130 0.00 0.00 0.00 3.25
701 740 4.038271 TCAAGCTTTTCTGGATCATGGT 57.962 40.909 0.00 0.00 0.00 3.55
730 769 4.864704 TGCTTAATCTTTGTGGTTTCCC 57.135 40.909 0.00 0.00 0.00 3.97
753 792 5.003096 ACTTTTCAGATCCAAGACCCAAT 57.997 39.130 0.00 0.00 0.00 3.16
755 794 3.557054 CGACTTTTCAGATCCAAGACCCA 60.557 47.826 0.00 0.00 0.00 4.51
789 828 7.478355 CCTTTTCTTTTCTTTTTCTTTTGTGCG 59.522 33.333 0.00 0.00 0.00 5.34
794 833 7.994425 TGCCCTTTTCTTTTCTTTTTCTTTT 57.006 28.000 0.00 0.00 0.00 2.27
795 834 7.994425 TTGCCCTTTTCTTTTCTTTTTCTTT 57.006 28.000 0.00 0.00 0.00 2.52
796 835 7.994425 TTTGCCCTTTTCTTTTCTTTTTCTT 57.006 28.000 0.00 0.00 0.00 2.52
797 836 7.415541 GCATTTGCCCTTTTCTTTTCTTTTTCT 60.416 33.333 0.00 0.00 34.31 2.52
798 837 6.692681 GCATTTGCCCTTTTCTTTTCTTTTTC 59.307 34.615 0.00 0.00 34.31 2.29
799 838 6.563422 GCATTTGCCCTTTTCTTTTCTTTTT 58.437 32.000 0.00 0.00 34.31 1.94
837 876 4.202050 GCATTTGACCTCTCTCTCTCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
838 877 3.701040 GCATTTGACCTCTCTCTCTCTCT 59.299 47.826 0.00 0.00 0.00 3.10
839 878 3.489059 CGCATTTGACCTCTCTCTCTCTC 60.489 52.174 0.00 0.00 0.00 3.20
911 951 0.889186 AAGCCCACGAACACACCATC 60.889 55.000 0.00 0.00 0.00 3.51
931 986 2.551459 GCGAGAGGGATGGAAATTGATG 59.449 50.000 0.00 0.00 0.00 3.07
1305 1418 2.600769 AAGTGGTCGAGGTCGGCT 60.601 61.111 3.70 0.00 44.45 5.52
1306 1419 2.126031 GAAGTGGTCGAGGTCGGC 60.126 66.667 0.00 0.00 44.28 5.54
1954 2161 5.298989 TCAGCAAACCCATATACGGTTAT 57.701 39.130 6.51 0.00 42.90 1.89
2046 2253 6.540914 TGTAGGTGTCGAAAACTTTCTTGAAT 59.459 34.615 0.00 0.00 35.07 2.57
2163 2373 6.423776 AGGCATTCCATTAACCCATTATTG 57.576 37.500 0.00 0.00 33.74 1.90
2164 2374 7.127032 TGAAAGGCATTCCATTAACCCATTATT 59.873 33.333 0.00 0.00 37.22 1.40
2377 2781 1.972872 ACTTGGCCACAGAAACAGAG 58.027 50.000 3.88 0.00 0.00 3.35
2472 2896 4.848562 TCCATATGAACTAGCACTACCG 57.151 45.455 3.65 0.00 0.00 4.02
2485 2909 5.601583 AAAACTGCAATGCATCCATATGA 57.398 34.783 8.91 0.00 38.13 2.15
2491 2915 3.916761 TGAGAAAAACTGCAATGCATCC 58.083 40.909 8.91 0.00 38.13 3.51
2643 3104 3.970610 CGCAACACAAAACTGATGAGAAG 59.029 43.478 0.00 0.00 0.00 2.85
2703 3164 7.175119 AGCTAATTTTTCAAGTAGTTGTCTCCC 59.825 37.037 10.08 0.00 33.80 4.30
2763 3260 8.564550 GCTTTAAGCTTCTCAATGTGCATACAC 61.565 40.741 10.01 0.00 41.94 2.90
2800 3299 6.268617 TCAGCAGAGGTAGCAATACTGAATAT 59.731 38.462 0.00 0.00 30.46 1.28
2903 5285 2.076863 CTTACCACTTGCAGCAGTACC 58.923 52.381 0.00 0.00 0.00 3.34
2906 5291 1.543429 GGACTTACCACTTGCAGCAGT 60.543 52.381 0.00 0.00 38.79 4.40
3130 5675 9.079833 CACAGCATTATTGGAAAAAGATAACAG 57.920 33.333 0.00 0.00 0.00 3.16
3234 5875 6.349243 TCATGGAAAAGATGAAGTTGCATT 57.651 33.333 0.00 0.00 31.82 3.56
3260 5901 4.957296 AGTCAAACCGATTTGTACTGTCT 58.043 39.130 1.33 0.00 44.76 3.41
3324 5965 3.118112 CCCATTCCTGTATCTCAGCAACT 60.118 47.826 0.00 0.00 42.38 3.16
3336 5977 1.203100 AGCAAAGAAGCCCATTCCTGT 60.203 47.619 0.00 0.00 38.84 4.00
3394 6035 3.743521 TGTGCAAGCTACAAAGATGACT 58.256 40.909 0.00 0.00 0.00 3.41
3461 6273 4.324331 GGCCAGAAATTAGGTAACAGAGGT 60.324 45.833 0.00 0.00 41.41 3.85
3718 6530 2.971330 CTGCTCTGATCATTAGGGGAGT 59.029 50.000 0.00 0.00 30.33 3.85
3767 6579 4.437682 ACCAGAATTCAGTTGAACCTGA 57.562 40.909 19.29 0.00 38.88 3.86
3775 6587 4.012374 CTGCACCATACCAGAATTCAGTT 58.988 43.478 8.44 0.00 0.00 3.16
3791 6603 3.196463 CATCTCTTCATCAGTCTGCACC 58.804 50.000 0.00 0.00 0.00 5.01
3811 6863 4.218417 GCATTTCCTTCCTTTTAGACAGCA 59.782 41.667 0.00 0.00 0.00 4.41
3941 7008 4.336433 CGGTAACTGAATCTTGGAATGCAT 59.664 41.667 0.00 0.00 0.00 3.96
3970 7037 3.550437 CTGCAAGTGTATAGCTTCCCT 57.450 47.619 0.00 0.00 0.00 4.20
4117 7184 5.256474 ACACTCATTATTTAGCAAGTGCCT 58.744 37.500 0.00 0.00 43.38 4.75
4193 7262 5.049198 GCTGCAGATTATTCATCCGAAATCA 60.049 40.000 20.43 0.00 34.01 2.57
4194 7263 5.049198 TGCTGCAGATTATTCATCCGAAATC 60.049 40.000 20.43 0.00 34.01 2.17
4195 7264 4.823442 TGCTGCAGATTATTCATCCGAAAT 59.177 37.500 20.43 0.00 34.01 2.17
4196 7265 4.198530 TGCTGCAGATTATTCATCCGAAA 58.801 39.130 20.43 0.00 34.01 3.46
4197 7266 3.807553 TGCTGCAGATTATTCATCCGAA 58.192 40.909 20.43 0.00 35.05 4.30
4198 7267 3.473923 TGCTGCAGATTATTCATCCGA 57.526 42.857 20.43 0.00 31.20 4.55
4199 7268 4.934001 ACTATGCTGCAGATTATTCATCCG 59.066 41.667 20.43 7.50 31.20 4.18
4200 7269 5.353678 GGACTATGCTGCAGATTATTCATCC 59.646 44.000 20.43 9.20 31.20 3.51
4201 7270 5.936372 TGGACTATGCTGCAGATTATTCATC 59.064 40.000 20.43 3.59 0.00 2.92
4202 7271 5.872963 TGGACTATGCTGCAGATTATTCAT 58.127 37.500 20.43 12.49 0.00 2.57
4203 7272 5.294734 TGGACTATGCTGCAGATTATTCA 57.705 39.130 20.43 4.70 0.00 2.57
4204 7273 6.624352 TTTGGACTATGCTGCAGATTATTC 57.376 37.500 20.43 10.96 0.00 1.75
4205 7274 6.548622 ACATTTGGACTATGCTGCAGATTATT 59.451 34.615 20.43 1.74 0.00 1.40
4206 7275 6.066690 ACATTTGGACTATGCTGCAGATTAT 58.933 36.000 20.43 10.69 0.00 1.28
4207 7276 5.439721 ACATTTGGACTATGCTGCAGATTA 58.560 37.500 20.43 6.89 0.00 1.75
4208 7277 4.275810 ACATTTGGACTATGCTGCAGATT 58.724 39.130 20.43 5.93 0.00 2.40
4209 7278 3.894759 ACATTTGGACTATGCTGCAGAT 58.105 40.909 20.43 10.74 0.00 2.90
4210 7279 3.354948 ACATTTGGACTATGCTGCAGA 57.645 42.857 20.43 1.76 0.00 4.26
4211 7280 5.297527 TCATAACATTTGGACTATGCTGCAG 59.702 40.000 10.11 10.11 0.00 4.41
4212 7281 5.192176 TCATAACATTTGGACTATGCTGCA 58.808 37.500 4.13 4.13 0.00 4.41
4213 7282 5.756195 TCATAACATTTGGACTATGCTGC 57.244 39.130 0.00 0.00 0.00 5.25
4214 7283 7.228108 ACTCATCATAACATTTGGACTATGCTG 59.772 37.037 0.00 0.00 0.00 4.41
4215 7284 7.285566 ACTCATCATAACATTTGGACTATGCT 58.714 34.615 0.00 0.00 0.00 3.79
4216 7285 7.502120 ACTCATCATAACATTTGGACTATGC 57.498 36.000 0.00 0.00 0.00 3.14
4217 7286 9.112725 TCAACTCATCATAACATTTGGACTATG 57.887 33.333 0.00 0.00 0.00 2.23
4218 7287 9.334947 CTCAACTCATCATAACATTTGGACTAT 57.665 33.333 0.00 0.00 0.00 2.12
4219 7288 7.770433 CCTCAACTCATCATAACATTTGGACTA 59.230 37.037 0.00 0.00 0.00 2.59
4220 7289 6.600822 CCTCAACTCATCATAACATTTGGACT 59.399 38.462 0.00 0.00 0.00 3.85
4221 7290 6.375455 ACCTCAACTCATCATAACATTTGGAC 59.625 38.462 0.00 0.00 0.00 4.02
4222 7291 6.484288 ACCTCAACTCATCATAACATTTGGA 58.516 36.000 0.00 0.00 0.00 3.53
4223 7292 6.764308 ACCTCAACTCATCATAACATTTGG 57.236 37.500 0.00 0.00 0.00 3.28
4224 7293 7.819644 TGAACCTCAACTCATCATAACATTTG 58.180 34.615 0.00 0.00 0.00 2.32
4225 7294 8.408043 TTGAACCTCAACTCATCATAACATTT 57.592 30.769 0.00 0.00 30.26 2.32
4226 7295 8.408043 TTTGAACCTCAACTCATCATAACATT 57.592 30.769 0.00 0.00 35.89 2.71
4227 7296 8.299570 GTTTTGAACCTCAACTCATCATAACAT 58.700 33.333 0.00 0.00 35.89 2.71
4228 7297 7.502226 AGTTTTGAACCTCAACTCATCATAACA 59.498 33.333 0.00 0.00 35.89 2.41
4229 7298 7.875971 AGTTTTGAACCTCAACTCATCATAAC 58.124 34.615 0.00 0.00 35.89 1.89
4230 7299 8.463930 AAGTTTTGAACCTCAACTCATCATAA 57.536 30.769 0.00 0.00 35.89 1.90
4231 7300 7.095229 CGAAGTTTTGAACCTCAACTCATCATA 60.095 37.037 0.00 0.00 35.89 2.15
4232 7301 6.293626 CGAAGTTTTGAACCTCAACTCATCAT 60.294 38.462 0.00 0.00 35.89 2.45
4233 7302 5.007626 CGAAGTTTTGAACCTCAACTCATCA 59.992 40.000 0.00 0.00 35.89 3.07
4234 7303 5.236478 TCGAAGTTTTGAACCTCAACTCATC 59.764 40.000 0.00 0.00 35.89 2.92
4235 7304 5.123227 TCGAAGTTTTGAACCTCAACTCAT 58.877 37.500 0.00 0.00 35.89 2.90
4236 7305 4.509616 TCGAAGTTTTGAACCTCAACTCA 58.490 39.130 0.00 0.00 35.89 3.41
4237 7306 5.467063 AGATCGAAGTTTTGAACCTCAACTC 59.533 40.000 0.00 0.00 35.89 3.01
4238 7307 5.368989 AGATCGAAGTTTTGAACCTCAACT 58.631 37.500 0.00 0.00 35.89 3.16
4239 7308 5.334182 GGAGATCGAAGTTTTGAACCTCAAC 60.334 44.000 0.00 0.00 35.89 3.18
4240 7309 4.755123 GGAGATCGAAGTTTTGAACCTCAA 59.245 41.667 0.00 0.00 34.03 3.02
4241 7310 4.202315 TGGAGATCGAAGTTTTGAACCTCA 60.202 41.667 0.00 0.00 0.00 3.86
4242 7311 4.315803 TGGAGATCGAAGTTTTGAACCTC 58.684 43.478 0.00 0.00 0.00 3.85
4243 7312 4.351874 TGGAGATCGAAGTTTTGAACCT 57.648 40.909 0.00 0.00 0.00 3.50
4244 7313 5.432885 TTTGGAGATCGAAGTTTTGAACC 57.567 39.130 0.00 0.00 0.00 3.62
4245 7314 6.262601 TGTTTTGGAGATCGAAGTTTTGAAC 58.737 36.000 0.00 0.00 0.00 3.18
4246 7315 6.443934 TGTTTTGGAGATCGAAGTTTTGAA 57.556 33.333 0.00 0.00 0.00 2.69
4247 7316 6.262049 TCATGTTTTGGAGATCGAAGTTTTGA 59.738 34.615 0.00 0.00 0.00 2.69
4248 7317 6.437928 TCATGTTTTGGAGATCGAAGTTTTG 58.562 36.000 0.00 0.00 0.00 2.44
4249 7318 6.633500 TCATGTTTTGGAGATCGAAGTTTT 57.367 33.333 0.00 0.00 0.00 2.43
4250 7319 6.656693 AGATCATGTTTTGGAGATCGAAGTTT 59.343 34.615 0.00 0.00 41.24 2.66
4251 7320 6.176183 AGATCATGTTTTGGAGATCGAAGTT 58.824 36.000 0.00 0.00 41.24 2.66
4252 7321 5.738909 AGATCATGTTTTGGAGATCGAAGT 58.261 37.500 0.00 0.00 41.24 3.01
4253 7322 6.047870 AGAGATCATGTTTTGGAGATCGAAG 58.952 40.000 0.00 0.00 41.24 3.79
4254 7323 5.982356 AGAGATCATGTTTTGGAGATCGAA 58.018 37.500 0.00 0.00 41.24 3.71
4255 7324 5.604758 AGAGATCATGTTTTGGAGATCGA 57.395 39.130 0.00 0.00 41.24 3.59
4256 7325 6.511416 AGTAGAGATCATGTTTTGGAGATCG 58.489 40.000 0.00 0.00 41.24 3.69
4257 7326 9.995003 ATAAGTAGAGATCATGTTTTGGAGATC 57.005 33.333 0.00 0.00 37.69 2.75
4259 7328 9.823647 GAATAAGTAGAGATCATGTTTTGGAGA 57.176 33.333 0.00 0.00 0.00 3.71
4260 7329 9.605275 TGAATAAGTAGAGATCATGTTTTGGAG 57.395 33.333 0.00 0.00 0.00 3.86
4261 7330 9.383519 GTGAATAAGTAGAGATCATGTTTTGGA 57.616 33.333 0.00 0.00 0.00 3.53
4262 7331 9.166173 TGTGAATAAGTAGAGATCATGTTTTGG 57.834 33.333 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.