Multiple sequence alignment - TraesCS6B01G074800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G074800 chr6B 100.000 4119 0 0 1549 5667 51428003 51423885 0.000000e+00 7607.0
1 TraesCS6B01G074800 chr6B 100.000 1169 0 0 1 1169 51429551 51428383 0.000000e+00 2159.0
2 TraesCS6B01G074800 chr6A 91.320 2546 159 38 2360 4879 30432733 30435242 0.000000e+00 3421.0
3 TraesCS6B01G074800 chr6A 84.629 579 67 18 1 560 30430679 30431254 1.780000e-154 556.0
4 TraesCS6B01G074800 chr6A 90.691 376 19 9 1549 1911 30431869 30432241 2.370000e-133 486.0
5 TraesCS6B01G074800 chr6A 84.221 526 45 17 649 1164 30431239 30431736 1.430000e-130 477.0
6 TraesCS6B01G074800 chr6A 88.831 385 15 11 1990 2351 30432276 30432655 1.120000e-121 448.0
7 TraesCS6B01G074800 chr6A 86.434 258 18 7 5287 5534 30438524 30438774 3.370000e-67 267.0
8 TraesCS6B01G074800 chr6A 85.417 144 16 4 4970 5113 30435239 30435377 1.650000e-30 145.0
9 TraesCS6B01G074800 chr6D 95.694 1347 45 5 2413 3755 27675223 27673886 0.000000e+00 2154.0
10 TraesCS6B01G074800 chr6D 87.691 983 82 24 3912 4885 27673874 27672922 0.000000e+00 1109.0
11 TraesCS6B01G074800 chr6D 90.566 848 26 19 1549 2351 27676080 27675242 0.000000e+00 1074.0
12 TraesCS6B01G074800 chr6D 89.437 568 50 7 1 560 27677491 27676926 0.000000e+00 708.0
13 TraesCS6B01G074800 chr6D 79.083 545 74 31 5013 5544 27671388 27670871 7.030000e-89 339.0
14 TraesCS6B01G074800 chr6D 82.450 302 26 14 649 949 27676941 27676666 7.340000e-59 239.0
15 TraesCS6B01G074800 chr6D 95.918 98 1 3 558 653 86945228 86945132 7.600000e-34 156.0
16 TraesCS6B01G074800 chr7D 87.923 828 71 9 4074 4874 627570486 627569661 0.000000e+00 948.0
17 TraesCS6B01G074800 chr7D 75.858 816 93 53 2815 3568 631819404 631820177 2.550000e-83 320.0
18 TraesCS6B01G074800 chr7D 94.949 99 4 1 4876 4973 407716534 407716632 2.730000e-33 154.0
19 TraesCS6B01G074800 chr7D 84.404 109 14 3 2088 2194 631818797 631818904 2.790000e-18 104.0
20 TraesCS6B01G074800 chr3A 86.270 874 86 13 4025 4874 620631402 620632265 0.000000e+00 918.0
21 TraesCS6B01G074800 chr3A 85.861 877 88 12 4025 4874 66297990 66298857 0.000000e+00 900.0
22 TraesCS6B01G074800 chr3A 95.098 102 4 1 4875 4975 692869569 692869670 5.880000e-35 159.0
23 TraesCS6B01G074800 chr7A 85.763 878 87 14 4025 4874 184080536 184081403 0.000000e+00 894.0
24 TraesCS6B01G074800 chr7A 81.967 244 38 3 1613 1850 736552416 736552173 9.630000e-48 202.0
25 TraesCS6B01G074800 chr2A 85.649 878 88 14 4025 4874 210329414 210328547 0.000000e+00 889.0
26 TraesCS6B01G074800 chr2A 94.949 99 4 1 4876 4973 14303594 14303496 2.730000e-33 154.0
27 TraesCS6B01G074800 chr5A 85.519 877 89 14 4025 4874 306451445 306452310 0.000000e+00 881.0
28 TraesCS6B01G074800 chr5A 87.500 416 25 8 1846 2251 345323423 345323025 6.690000e-124 455.0
29 TraesCS6B01G074800 chr5A 91.429 105 6 3 553 654 18954895 18954791 2.130000e-29 141.0
30 TraesCS6B01G074800 chr5B 85.230 826 87 19 4076 4874 488455754 488454937 0.000000e+00 817.0
31 TraesCS6B01G074800 chr5B 94.949 99 4 1 4876 4973 223038340 223038242 2.730000e-33 154.0
32 TraesCS6B01G074800 chr5B 94.000 100 3 3 556 653 684443729 684443631 1.270000e-31 148.0
33 TraesCS6B01G074800 chr5B 95.506 89 4 0 560 648 611696125 611696213 5.920000e-30 143.0
34 TraesCS6B01G074800 chr5B 89.908 109 8 3 547 653 393755655 393755548 2.750000e-28 137.0
35 TraesCS6B01G074800 chr4B 84.643 827 96 11 4076 4874 327120213 327121036 0.000000e+00 795.0
36 TraesCS6B01G074800 chr4B 83.679 386 37 11 1871 2251 275870843 275871207 1.960000e-89 340.0
37 TraesCS6B01G074800 chr4B 91.818 110 6 3 547 653 547200617 547200508 3.540000e-32 150.0
38 TraesCS6B01G074800 chr4B 95.833 48 2 0 2269 2316 237850041 237850088 1.690000e-10 78.7
39 TraesCS6B01G074800 chr4B 95.833 48 2 0 2269 2316 237889604 237889651 1.690000e-10 78.7
40 TraesCS6B01G074800 chr7B 88.729 417 19 8 1970 2360 637758737 637759151 8.540000e-133 484.0
41 TraesCS6B01G074800 chr7B 84.490 245 24 2 2357 2600 637759212 637759443 4.420000e-56 230.0
42 TraesCS6B01G074800 chr7B 79.252 294 46 9 1549 1835 743383057 743383342 2.080000e-44 191.0
43 TraesCS6B01G074800 chr7B 95.000 100 4 1 4876 4974 159510602 159510701 7.600000e-34 156.0
44 TraesCS6B01G074800 chr2B 88.571 420 20 9 1970 2363 549276309 549275892 8.540000e-133 484.0
45 TraesCS6B01G074800 chr2B 88.360 189 21 1 2413 2600 549275791 549275603 5.710000e-55 226.0
46 TraesCS6B01G074800 chr2B 93.939 99 5 1 4876 4973 25123230 25123328 1.270000e-31 148.0
47 TraesCS6B01G074800 chr2B 100.000 32 0 0 2284 2315 127020538 127020569 6.130000e-05 60.2
48 TraesCS6B01G074800 chr4A 87.310 394 29 9 1862 2251 588328231 588328607 1.130000e-116 431.0
49 TraesCS6B01G074800 chr4A 86.250 160 14 3 1984 2140 740885799 740885645 3.510000e-37 167.0
50 TraesCS6B01G074800 chr3D 87.611 339 24 6 1917 2251 590337177 590336853 1.490000e-100 377.0
51 TraesCS6B01G074800 chr3D 94.059 101 5 1 4875 4974 48071009 48070909 9.830000e-33 152.0
52 TraesCS6B01G074800 chr2D 95.000 100 4 1 4876 4974 107204080 107204179 7.600000e-34 156.0
53 TraesCS6B01G074800 chr1D 90.598 117 6 4 4876 4987 180852493 180852377 3.540000e-32 150.0
54 TraesCS6B01G074800 chr1D 96.629 89 2 1 560 648 12417068 12417155 4.580000e-31 147.0
55 TraesCS6B01G074800 chr1B 94.792 96 2 3 561 654 563759197 563759103 4.580000e-31 147.0
56 TraesCS6B01G074800 chrUn 89.908 109 8 3 543 648 60597254 60597362 2.750000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G074800 chr6B 51423885 51429551 5666 True 4883.000000 7607 100.000000 1 5667 2 chr6B.!!$R1 5666
1 TraesCS6B01G074800 chr6A 30430679 30438774 8095 False 828.571429 3421 87.363286 1 5534 7 chr6A.!!$F1 5533
2 TraesCS6B01G074800 chr6D 27670871 27677491 6620 True 937.166667 2154 87.486833 1 5544 6 chr6D.!!$R2 5543
3 TraesCS6B01G074800 chr7D 627569661 627570486 825 True 948.000000 948 87.923000 4074 4874 1 chr7D.!!$R1 800
4 TraesCS6B01G074800 chr7D 631818797 631820177 1380 False 212.000000 320 80.131000 2088 3568 2 chr7D.!!$F2 1480
5 TraesCS6B01G074800 chr3A 620631402 620632265 863 False 918.000000 918 86.270000 4025 4874 1 chr3A.!!$F2 849
6 TraesCS6B01G074800 chr3A 66297990 66298857 867 False 900.000000 900 85.861000 4025 4874 1 chr3A.!!$F1 849
7 TraesCS6B01G074800 chr7A 184080536 184081403 867 False 894.000000 894 85.763000 4025 4874 1 chr7A.!!$F1 849
8 TraesCS6B01G074800 chr2A 210328547 210329414 867 True 889.000000 889 85.649000 4025 4874 1 chr2A.!!$R2 849
9 TraesCS6B01G074800 chr5A 306451445 306452310 865 False 881.000000 881 85.519000 4025 4874 1 chr5A.!!$F1 849
10 TraesCS6B01G074800 chr5B 488454937 488455754 817 True 817.000000 817 85.230000 4076 4874 1 chr5B.!!$R3 798
11 TraesCS6B01G074800 chr4B 327120213 327121036 823 False 795.000000 795 84.643000 4076 4874 1 chr4B.!!$F4 798
12 TraesCS6B01G074800 chr7B 637758737 637759443 706 False 357.000000 484 86.609500 1970 2600 2 chr7B.!!$F3 630
13 TraesCS6B01G074800 chr2B 549275603 549276309 706 True 355.000000 484 88.465500 1970 2600 2 chr2B.!!$R1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 493 0.109342 CACCAACTGTCCTGAAGGCT 59.891 55.0 0.00 0.0 34.44 4.58 F
939 959 0.384725 CCGAAAACAGAGCAACGCTG 60.385 55.0 0.00 0.0 39.88 5.18 F
2424 2896 0.455410 GGCGCTGTGGAATTGCATAA 59.545 50.0 7.64 0.0 0.00 1.90 F
4086 4672 0.894835 CATGCCCCAGTTTACCAACC 59.105 55.0 0.00 0.0 32.70 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 2124 0.106318 GGCCCTGAATCTGAATGCCT 60.106 55.0 0.00 0.00 34.61 4.75 R
2578 3052 0.105964 ACAGCACGCCTCTGTTTACA 59.894 50.0 0.00 0.00 41.61 2.41 R
4143 4730 0.173481 CGATCTCACGGGTGTGTCAT 59.827 55.0 0.00 0.00 46.49 3.06 R
5243 7425 0.042013 GTCGTCGTCGCTAGAGATGG 60.042 60.0 14.75 3.87 36.96 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 3.537795 AGACACCCTCCAACACTAGTA 57.462 47.619 0.00 0.00 0.00 1.82
102 106 3.801698 ACATAGCGCACAATCTTCATCT 58.198 40.909 11.47 0.00 0.00 2.90
111 115 4.142513 GCACAATCTTCATCTCCCTTCAAC 60.143 45.833 0.00 0.00 0.00 3.18
130 134 1.343478 ACCGACCTCATGGAGATCCTT 60.343 52.381 0.00 0.00 36.82 3.36
131 135 1.765314 CCGACCTCATGGAGATCCTTT 59.235 52.381 0.00 0.00 36.82 3.11
133 137 3.370953 CCGACCTCATGGAGATCCTTTTT 60.371 47.826 0.00 0.00 36.82 1.94
135 139 5.428253 CGACCTCATGGAGATCCTTTTTAA 58.572 41.667 0.00 0.00 36.82 1.52
164 168 9.154847 TCATTGTGTTATAGTGAATGAACTCAG 57.845 33.333 0.00 0.00 31.68 3.35
177 181 1.620819 GAACTCAGCTCCAGTCCTCAA 59.379 52.381 0.00 0.00 0.00 3.02
181 185 1.552337 TCAGCTCCAGTCCTCAATGTC 59.448 52.381 0.00 0.00 0.00 3.06
182 186 1.554160 CAGCTCCAGTCCTCAATGTCT 59.446 52.381 0.00 0.00 0.00 3.41
187 191 0.994995 CAGTCCTCAATGTCTTCGCG 59.005 55.000 0.00 0.00 0.00 5.87
190 194 0.456142 TCCTCAATGTCTTCGCGTCG 60.456 55.000 5.77 0.00 0.00 5.12
207 211 1.441016 CGCGCTGCTTTTGAAGACC 60.441 57.895 5.56 0.00 0.00 3.85
233 245 5.532406 GCCCAATATATGAGAAAAGAGCACA 59.468 40.000 0.00 0.00 0.00 4.57
234 246 6.208204 GCCCAATATATGAGAAAAGAGCACAT 59.792 38.462 0.00 0.00 0.00 3.21
289 302 3.333804 TGTGCTCAAATGTTGCTCGATA 58.666 40.909 0.00 0.00 0.00 2.92
306 319 3.559655 TCGATATCGAGCAAACCAAATGG 59.440 43.478 23.48 0.00 44.22 3.16
308 321 0.171007 ATCGAGCAAACCAAATGGCG 59.829 50.000 0.00 0.00 39.32 5.69
330 343 2.482864 CAAGGCCAACATTGTGAAACC 58.517 47.619 5.01 0.00 34.36 3.27
336 349 3.727726 CCAACATTGTGAAACCTTTCCC 58.272 45.455 0.00 0.00 36.36 3.97
337 350 3.387699 CCAACATTGTGAAACCTTTCCCT 59.612 43.478 0.00 0.00 36.36 4.20
338 351 4.370917 CAACATTGTGAAACCTTTCCCTG 58.629 43.478 0.00 0.00 36.36 4.45
340 353 1.408969 TTGTGAAACCTTTCCCTGCC 58.591 50.000 0.00 0.00 36.36 4.85
342 355 1.133199 TGTGAAACCTTTCCCTGCCAT 60.133 47.619 0.00 0.00 36.36 4.40
343 356 1.273327 GTGAAACCTTTCCCTGCCATG 59.727 52.381 0.00 0.00 36.36 3.66
376 392 8.470002 AGAATAACAAGAGAAATATTGCCAACC 58.530 33.333 0.00 0.00 0.00 3.77
382 398 6.212888 AGAGAAATATTGCCAACCATTGTC 57.787 37.500 0.00 0.00 0.00 3.18
407 423 4.192317 GACATAGATCAGTTCCCAACACC 58.808 47.826 0.00 0.00 0.00 4.16
409 425 4.228210 ACATAGATCAGTTCCCAACACCAT 59.772 41.667 0.00 0.00 0.00 3.55
410 426 3.356529 AGATCAGTTCCCAACACCATC 57.643 47.619 0.00 0.00 0.00 3.51
441 457 6.319658 GGATCTAAAATTTGCTCATGTGAGGA 59.680 38.462 11.66 6.15 42.29 3.71
477 493 0.109342 CACCAACTGTCCTGAAGGCT 59.891 55.000 0.00 0.00 34.44 4.58
589 606 4.400961 GCAACCGGCAGGAGCTCT 62.401 66.667 14.64 0.00 43.97 4.09
590 607 2.435586 CAACCGGCAGGAGCTCTG 60.436 66.667 14.64 10.92 46.03 3.35
603 620 6.129053 CAGGAGCTCTGCCTTTTTATTAAG 57.871 41.667 14.64 0.00 36.60 1.85
604 621 5.882557 CAGGAGCTCTGCCTTTTTATTAAGA 59.117 40.000 14.64 0.00 36.60 2.10
605 622 6.375455 CAGGAGCTCTGCCTTTTTATTAAGAA 59.625 38.462 14.64 0.00 36.60 2.52
606 623 6.948309 AGGAGCTCTGCCTTTTTATTAAGAAA 59.052 34.615 14.64 0.00 29.44 2.52
607 624 7.451566 AGGAGCTCTGCCTTTTTATTAAGAAAA 59.548 33.333 14.64 3.92 29.44 2.29
608 625 8.088365 GGAGCTCTGCCTTTTTATTAAGAAAAA 58.912 33.333 17.26 17.26 36.25 1.94
631 648 9.807921 AAAAGAGAATTGACCAGTTTATAAGGA 57.192 29.630 0.00 0.00 0.00 3.36
632 649 9.807921 AAAGAGAATTGACCAGTTTATAAGGAA 57.192 29.630 0.00 0.00 0.00 3.36
633 650 9.807921 AAGAGAATTGACCAGTTTATAAGGAAA 57.192 29.630 0.00 0.00 0.00 3.13
634 651 9.807921 AGAGAATTGACCAGTTTATAAGGAAAA 57.192 29.630 0.00 0.00 0.00 2.29
635 652 9.841880 GAGAATTGACCAGTTTATAAGGAAAAC 57.158 33.333 0.00 0.00 37.14 2.43
636 653 9.588096 AGAATTGACCAGTTTATAAGGAAAACT 57.412 29.630 0.00 0.00 45.64 2.66
642 659 4.913784 AGTTTATAAGGAAAACTGGCCGA 58.086 39.130 0.00 0.00 43.66 5.54
643 660 5.318630 AGTTTATAAGGAAAACTGGCCGAA 58.681 37.500 0.00 0.00 43.66 4.30
644 661 5.771165 AGTTTATAAGGAAAACTGGCCGAAA 59.229 36.000 0.00 0.00 43.66 3.46
645 662 6.265876 AGTTTATAAGGAAAACTGGCCGAAAA 59.734 34.615 0.00 0.00 43.66 2.29
646 663 2.882927 AAGGAAAACTGGCCGAAAAC 57.117 45.000 0.00 0.00 0.00 2.43
647 664 1.037493 AGGAAAACTGGCCGAAAACC 58.963 50.000 0.00 0.00 0.00 3.27
648 665 0.747852 GGAAAACTGGCCGAAAACCA 59.252 50.000 0.00 0.00 35.40 3.67
649 666 1.137282 GGAAAACTGGCCGAAAACCAA 59.863 47.619 0.00 0.00 36.56 3.67
650 667 2.198406 GAAAACTGGCCGAAAACCAAC 58.802 47.619 0.00 0.00 36.56 3.77
651 668 1.187087 AAACTGGCCGAAAACCAACA 58.813 45.000 0.00 0.00 36.56 3.33
652 669 1.408969 AACTGGCCGAAAACCAACAT 58.591 45.000 0.00 0.00 36.56 2.71
653 670 1.408969 ACTGGCCGAAAACCAACATT 58.591 45.000 0.00 0.00 36.56 2.71
654 671 1.068434 ACTGGCCGAAAACCAACATTG 59.932 47.619 0.00 0.00 36.56 2.82
655 672 1.068434 CTGGCCGAAAACCAACATTGT 59.932 47.619 0.00 0.00 36.56 2.71
670 687 7.099764 ACCAACATTGTTAAATTGTGTGAACA 58.900 30.769 0.86 0.00 0.00 3.18
689 706 8.849168 TGTGAACATAAGTCATCAAGTTTTCAT 58.151 29.630 0.00 0.00 0.00 2.57
723 740 6.646240 GTGTGCAAATATCCAGTTGAAAATGT 59.354 34.615 0.00 0.00 31.35 2.71
733 750 7.144722 TCCAGTTGAAAATGTAGCACATAAG 57.855 36.000 2.80 0.00 37.97 1.73
747 764 7.710907 TGTAGCACATAAGCGAAAAGATAGAAT 59.289 33.333 0.00 0.00 40.15 2.40
775 795 7.817418 TGGTGCATAATTTTATTAGGGAGTC 57.183 36.000 0.00 0.00 0.00 3.36
777 797 7.836685 TGGTGCATAATTTTATTAGGGAGTCAA 59.163 33.333 0.00 0.00 0.00 3.18
778 798 8.352942 GGTGCATAATTTTATTAGGGAGTCAAG 58.647 37.037 0.00 0.00 0.00 3.02
779 799 8.903820 GTGCATAATTTTATTAGGGAGTCAAGT 58.096 33.333 0.00 0.00 0.00 3.16
780 800 9.474313 TGCATAATTTTATTAGGGAGTCAAGTT 57.526 29.630 0.00 0.00 0.00 2.66
787 807 9.734984 TTTTATTAGGGAGTCAAGTTTTAGGAG 57.265 33.333 0.00 0.00 0.00 3.69
788 808 6.954352 ATTAGGGAGTCAAGTTTTAGGAGT 57.046 37.500 0.00 0.00 0.00 3.85
789 809 6.758806 TTAGGGAGTCAAGTTTTAGGAGTT 57.241 37.500 0.00 0.00 0.00 3.01
790 810 5.230323 AGGGAGTCAAGTTTTAGGAGTTC 57.770 43.478 0.00 0.00 0.00 3.01
791 811 3.995048 GGGAGTCAAGTTTTAGGAGTTCG 59.005 47.826 0.00 0.00 0.00 3.95
792 812 3.995048 GGAGTCAAGTTTTAGGAGTTCGG 59.005 47.826 0.00 0.00 0.00 4.30
793 813 4.502777 GGAGTCAAGTTTTAGGAGTTCGGT 60.503 45.833 0.00 0.00 0.00 4.69
794 814 5.032327 AGTCAAGTTTTAGGAGTTCGGTT 57.968 39.130 0.00 0.00 0.00 4.44
795 815 6.165700 AGTCAAGTTTTAGGAGTTCGGTTA 57.834 37.500 0.00 0.00 0.00 2.85
796 816 6.221659 AGTCAAGTTTTAGGAGTTCGGTTAG 58.778 40.000 0.00 0.00 0.00 2.34
797 817 5.407691 GTCAAGTTTTAGGAGTTCGGTTAGG 59.592 44.000 0.00 0.00 0.00 2.69
798 818 5.070847 TCAAGTTTTAGGAGTTCGGTTAGGT 59.929 40.000 0.00 0.00 0.00 3.08
882 902 8.757164 ATGAGTTAAAATTTGGAAATTCGGTC 57.243 30.769 0.00 0.00 37.62 4.79
886 906 8.585018 AGTTAAAATTTGGAAATTCGGTCAGAT 58.415 29.630 0.00 0.00 37.62 2.90
890 910 8.931385 AAATTTGGAAATTCGGTCAGATAATG 57.069 30.769 0.00 0.00 37.62 1.90
891 911 5.499139 TTGGAAATTCGGTCAGATAATGC 57.501 39.130 0.00 0.00 0.00 3.56
893 913 3.253432 GGAAATTCGGTCAGATAATGCCC 59.747 47.826 0.00 0.00 0.00 5.36
894 914 3.864789 AATTCGGTCAGATAATGCCCT 57.135 42.857 0.00 0.00 0.00 5.19
895 915 2.910688 TTCGGTCAGATAATGCCCTC 57.089 50.000 0.00 0.00 0.00 4.30
896 916 2.088104 TCGGTCAGATAATGCCCTCT 57.912 50.000 0.00 0.00 0.00 3.69
897 917 2.398588 TCGGTCAGATAATGCCCTCTT 58.601 47.619 0.00 0.00 0.00 2.85
898 918 2.771943 TCGGTCAGATAATGCCCTCTTT 59.228 45.455 0.00 0.00 0.00 2.52
899 919 3.199946 TCGGTCAGATAATGCCCTCTTTT 59.800 43.478 0.00 0.00 0.00 2.27
900 920 3.947834 CGGTCAGATAATGCCCTCTTTTT 59.052 43.478 0.00 0.00 0.00 1.94
931 951 1.663695 ACACACACCCGAAAACAGAG 58.336 50.000 0.00 0.00 0.00 3.35
938 958 1.507141 CCCGAAAACAGAGCAACGCT 61.507 55.000 0.00 0.00 43.88 5.07
939 959 0.384725 CCGAAAACAGAGCAACGCTG 60.385 55.000 0.00 0.00 39.88 5.18
951 972 3.133365 AACGCTGCCTTCCCCTTGT 62.133 57.895 0.00 0.00 0.00 3.16
962 983 2.234296 CCCCTTGTGCTTCTCCCCT 61.234 63.158 0.00 0.00 0.00 4.79
1111 1366 2.045926 CCTCCCTCCCACGCTTTG 60.046 66.667 0.00 0.00 0.00 2.77
1136 1392 1.133294 TCCACCCCTTGGTTTCTTTCC 60.133 52.381 0.00 0.00 44.75 3.13
1576 1833 7.309920 TCTGCGAGGGTTTTAATTCAAATTAC 58.690 34.615 0.00 0.00 31.03 1.89
1578 1835 8.338072 TGCGAGGGTTTTAATTCAAATTACTA 57.662 30.769 0.00 0.00 31.03 1.82
1579 1836 8.794553 TGCGAGGGTTTTAATTCAAATTACTAA 58.205 29.630 0.00 0.00 31.03 2.24
1580 1837 9.797556 GCGAGGGTTTTAATTCAAATTACTAAT 57.202 29.630 0.00 0.00 31.03 1.73
1591 1848 9.753674 AATTCAAATTACTAATTCCACTCTCCA 57.246 29.630 0.00 0.00 0.00 3.86
1592 1849 9.753674 ATTCAAATTACTAATTCCACTCTCCAA 57.246 29.630 0.00 0.00 0.00 3.53
1593 1850 9.753674 TTCAAATTACTAATTCCACTCTCCAAT 57.246 29.630 0.00 0.00 0.00 3.16
1594 1851 9.396022 TCAAATTACTAATTCCACTCTCCAATC 57.604 33.333 0.00 0.00 0.00 2.67
1595 1852 8.624776 CAAATTACTAATTCCACTCTCCAATCC 58.375 37.037 0.00 0.00 0.00 3.01
1596 1853 6.884472 TTACTAATTCCACTCTCCAATCCA 57.116 37.500 0.00 0.00 0.00 3.41
1600 1857 2.268796 TCCACTCTCCAATCCATCCA 57.731 50.000 0.00 0.00 0.00 3.41
1603 1860 2.709934 CCACTCTCCAATCCATCCATCT 59.290 50.000 0.00 0.00 0.00 2.90
1660 1917 2.851071 CGCGAGGATCCTGGTCTCC 61.851 68.421 22.02 3.91 0.00 3.71
1740 1997 4.181010 CTCCGGGGCCCACATCAG 62.181 72.222 26.86 7.63 0.00 2.90
1751 2008 2.060383 CACATCAGGCTCTCCGGGA 61.060 63.158 0.00 0.00 37.47 5.14
1867 2124 6.869206 AAGCTCTTCTACCTGGTATAAACA 57.131 37.500 7.07 0.00 0.00 2.83
1868 2125 6.472686 AGCTCTTCTACCTGGTATAAACAG 57.527 41.667 7.07 6.62 35.74 3.16
1869 2126 7.899056 GAAGCTCTTCTACCTGGTATAAACAGG 60.899 44.444 18.55 18.55 46.14 4.00
1899 2166 3.092511 GGGCCATCTCCCTCTGCA 61.093 66.667 4.39 0.00 43.13 4.41
1938 2205 3.691609 GGGCTAACTGACATTTCTTCAGG 59.308 47.826 4.48 0.00 44.19 3.86
2267 2555 2.601367 CCACACAAGGCCCAAGGG 60.601 66.667 0.00 0.00 38.57 3.95
2268 2556 2.520458 CACACAAGGCCCAAGGGA 59.480 61.111 9.92 0.00 37.50 4.20
2269 2557 1.077265 CACACAAGGCCCAAGGGAT 59.923 57.895 9.92 0.00 37.50 3.85
2270 2558 0.967380 CACACAAGGCCCAAGGGATC 60.967 60.000 9.92 0.00 37.50 3.36
2282 2570 0.527565 AAGGGATCGTGCAATGCAAC 59.472 50.000 10.44 3.51 41.47 4.17
2290 2578 1.153524 TGCAATGCAACTGACCCCT 59.846 52.632 5.01 0.00 34.76 4.79
2322 2621 1.000827 CATGTTTGGTTTACGGCAGCA 60.001 47.619 0.00 0.00 0.00 4.41
2357 2760 3.630013 AGCCTTGCTCTCGTGCCA 61.630 61.111 0.00 0.00 30.62 4.92
2372 2844 4.018490 TCGTGCCATTACTACCTGTTCTA 58.982 43.478 0.00 0.00 0.00 2.10
2380 2852 7.039363 GCCATTACTACCTGTTCTATCATCTCT 60.039 40.741 0.00 0.00 0.00 3.10
2406 2878 7.670140 TGTATCTACCTAGTACATCTGATTGGG 59.330 40.741 0.00 0.00 0.00 4.12
2424 2896 0.455410 GGCGCTGTGGAATTGCATAA 59.545 50.000 7.64 0.00 0.00 1.90
2440 2913 4.819769 TGCATAATTTGGAGCCTTGTTTC 58.180 39.130 0.00 0.00 0.00 2.78
2450 2923 1.798813 AGCCTTGTTTCGAATCGTCAC 59.201 47.619 1.52 1.28 0.00 3.67
2452 2925 1.126113 CCTTGTTTCGAATCGTCACGG 59.874 52.381 1.52 4.74 0.00 4.94
2468 2941 1.801771 CACGGAAAAATACGTCTGCCA 59.198 47.619 0.00 0.00 42.04 4.92
2578 3052 4.201940 CCATGTTTGTGTATGTCATCGCAT 60.202 41.667 0.00 0.00 0.00 4.73
2693 3172 4.604843 TCAGAATATCAGCTTGCGTTTG 57.395 40.909 0.00 0.00 0.00 2.93
2704 3183 1.543802 CTTGCGTTTGCTATTTGGGGA 59.456 47.619 0.00 0.00 43.34 4.81
3036 3539 5.359576 AGCACTGGTATTTCTGTTTTTGTCA 59.640 36.000 0.00 0.00 0.00 3.58
3157 3693 5.326200 AGATCGAACCTGAGAAATACGTT 57.674 39.130 0.00 0.00 0.00 3.99
3660 4241 8.816144 CACTAGAGTAGAATCTTGATTTTCTGC 58.184 37.037 0.00 0.00 35.56 4.26
3680 4261 4.264253 TGCCAGAGGTAATCATTGTCAAG 58.736 43.478 0.00 0.00 0.00 3.02
3767 4348 0.972883 AGGTTCACTCCTGCTGTCTC 59.027 55.000 0.00 0.00 36.35 3.36
3768 4349 0.972883 GGTTCACTCCTGCTGTCTCT 59.027 55.000 0.00 0.00 0.00 3.10
3770 4351 2.411904 GTTCACTCCTGCTGTCTCTTG 58.588 52.381 0.00 0.00 0.00 3.02
3771 4352 1.709578 TCACTCCTGCTGTCTCTTGT 58.290 50.000 0.00 0.00 0.00 3.16
3772 4353 1.342496 TCACTCCTGCTGTCTCTTGTG 59.658 52.381 0.00 0.00 0.00 3.33
3882 4463 4.279169 CACCCTAATCCAACAGGCATATTG 59.721 45.833 0.00 0.00 0.00 1.90
3925 4511 7.201652 GGCTTGACTCTGTTAATCTGATTTACC 60.202 40.741 14.74 2.63 0.00 2.85
3935 4521 9.237187 TGTTAATCTGATTTACCTATGCAAACA 57.763 29.630 14.74 9.49 0.00 2.83
3957 4543 2.818274 CGTAGTTTCCTGCGCCCC 60.818 66.667 4.18 0.00 39.89 5.80
3975 4561 1.063942 CCCATTAAGTCCCAAGTCCCC 60.064 57.143 0.00 0.00 0.00 4.81
3976 4562 1.063942 CCATTAAGTCCCAAGTCCCCC 60.064 57.143 0.00 0.00 0.00 5.40
3979 4565 2.143231 TAAGTCCCAAGTCCCCCTTT 57.857 50.000 0.00 0.00 0.00 3.11
3990 4576 5.200483 CAAGTCCCCCTTTGCTTCATATTA 58.800 41.667 0.00 0.00 0.00 0.98
3992 4578 4.478686 AGTCCCCCTTTGCTTCATATTAGT 59.521 41.667 0.00 0.00 0.00 2.24
3998 4584 8.328758 CCCCCTTTGCTTCATATTAGTATCATA 58.671 37.037 0.00 0.00 0.00 2.15
4010 4596 9.218525 CATATTAGTATCATAATCCAGGGACCT 57.781 37.037 0.00 0.00 0.00 3.85
4011 4597 7.741554 ATTAGTATCATAATCCAGGGACCTC 57.258 40.000 0.00 0.00 0.00 3.85
4018 4604 3.833559 AATCCAGGGACCTCAAAACAT 57.166 42.857 0.00 0.00 0.00 2.71
4032 4618 7.103641 ACCTCAAAACATCTCTCGCTATTTTA 58.896 34.615 0.00 0.00 0.00 1.52
4035 4621 6.876789 TCAAAACATCTCTCGCTATTTTACCA 59.123 34.615 0.00 0.00 0.00 3.25
4036 4622 7.552687 TCAAAACATCTCTCGCTATTTTACCAT 59.447 33.333 0.00 0.00 0.00 3.55
4039 4625 8.539770 AACATCTCTCGCTATTTTACCATATG 57.460 34.615 0.00 0.00 0.00 1.78
4045 4631 9.239002 CTCTCGCTATTTTACCATATGTATAGC 57.761 37.037 1.24 10.24 34.41 2.97
4048 4634 6.200286 CGCTATTTTACCATATGTATAGCGGG 59.800 42.308 25.70 12.83 45.94 6.13
4086 4672 0.894835 CATGCCCCAGTTTACCAACC 59.105 55.000 0.00 0.00 32.70 3.77
4120 4706 2.668550 GCCGCGAAACCTGAACCT 60.669 61.111 8.23 0.00 0.00 3.50
4125 4711 1.069906 CGCGAAACCTGAACCTTCTTG 60.070 52.381 0.00 0.00 0.00 3.02
4143 4730 4.717877 TCTTGTCTTGAATTTCTCCAGCA 58.282 39.130 0.00 0.00 0.00 4.41
4348 4937 4.141344 GGGCTATGGTTTGGACTAATGGTA 60.141 45.833 0.00 0.00 0.00 3.25
4430 5020 1.939255 GGACGAACGAGAGGTAGGTAG 59.061 57.143 0.14 0.00 0.00 3.18
4468 5058 2.031191 CGGTGTTTGCGTGTTCTTTACT 59.969 45.455 0.00 0.00 0.00 2.24
4470 5060 3.311596 GGTGTTTGCGTGTTCTTTACTCT 59.688 43.478 0.00 0.00 0.00 3.24
4514 5107 2.884012 TCATTTAACCTGCAGTGTGTGG 59.116 45.455 13.81 0.00 0.00 4.17
4515 5108 2.428544 TTTAACCTGCAGTGTGTGGT 57.571 45.000 13.81 0.00 0.00 4.16
4782 5401 5.790593 ACGTTGCTGGAGAAATTAGTTAGA 58.209 37.500 0.00 0.00 0.00 2.10
4874 5494 3.742369 GTCAATGTTGCTTCCATGTTTGG 59.258 43.478 0.00 0.00 45.15 3.28
4886 6135 1.278127 CATGTTTGGTACTCCCTCCGT 59.722 52.381 0.00 0.00 0.00 4.69
4887 6136 1.426751 TGTTTGGTACTCCCTCCGTT 58.573 50.000 0.00 0.00 0.00 4.44
4888 6137 1.345415 TGTTTGGTACTCCCTCCGTTC 59.655 52.381 0.00 0.00 0.00 3.95
4890 6139 0.178926 TTGGTACTCCCTCCGTTCCA 60.179 55.000 0.00 0.00 31.17 3.53
4891 6140 0.178926 TGGTACTCCCTCCGTTCCAA 60.179 55.000 0.00 0.00 30.28 3.53
4895 6144 3.198417 GGTACTCCCTCCGTTCCAAAATA 59.802 47.826 0.00 0.00 0.00 1.40
4896 6145 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4898 6147 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4899 6148 4.966805 ACTCCCTCCGTTCCAAAATAGATA 59.033 41.667 0.00 0.00 0.00 1.98
4900 6149 5.163332 ACTCCCTCCGTTCCAAAATAGATAC 60.163 44.000 0.00 0.00 0.00 2.24
4901 6150 4.966805 TCCCTCCGTTCCAAAATAGATACT 59.033 41.667 0.00 0.00 0.00 2.12
4902 6151 5.070047 TCCCTCCGTTCCAAAATAGATACTC 59.930 44.000 0.00 0.00 0.00 2.59
4903 6152 5.163343 CCCTCCGTTCCAAAATAGATACTCA 60.163 44.000 0.00 0.00 0.00 3.41
4904 6153 6.346096 CCTCCGTTCCAAAATAGATACTCAA 58.654 40.000 0.00 0.00 0.00 3.02
4905 6154 6.258068 CCTCCGTTCCAAAATAGATACTCAAC 59.742 42.308 0.00 0.00 0.00 3.18
4909 6158 7.962918 CCGTTCCAAAATAGATACTCAACTTTG 59.037 37.037 0.00 0.00 0.00 2.77
4910 6159 8.504005 CGTTCCAAAATAGATACTCAACTTTGT 58.496 33.333 0.00 0.00 0.00 2.83
4954 6981 7.604657 TGGTACAAAGTTGGGTCATTTATTT 57.395 32.000 0.00 0.00 31.92 1.40
4955 6982 8.024145 TGGTACAAAGTTGGGTCATTTATTTT 57.976 30.769 0.00 0.00 31.92 1.82
4956 6983 7.928706 TGGTACAAAGTTGGGTCATTTATTTTG 59.071 33.333 0.00 0.00 31.92 2.44
4957 6984 7.386573 GGTACAAAGTTGGGTCATTTATTTTGG 59.613 37.037 0.00 0.00 0.00 3.28
4958 6985 7.130681 ACAAAGTTGGGTCATTTATTTTGGA 57.869 32.000 0.00 0.00 0.00 3.53
4961 6988 5.778862 AGTTGGGTCATTTATTTTGGAACG 58.221 37.500 0.00 0.00 0.00 3.95
4966 6993 4.142249 GGTCATTTATTTTGGAACGGAGGG 60.142 45.833 0.00 0.00 0.00 4.30
4968 6995 4.703093 TCATTTATTTTGGAACGGAGGGAC 59.297 41.667 0.00 0.00 0.00 4.46
4984 7011 5.411977 CGGAGGGACTACTAGTGTATGTATG 59.588 48.000 5.39 0.00 41.55 2.39
4986 7013 5.702266 AGGGACTACTAGTGTATGTATGCA 58.298 41.667 5.39 0.00 36.02 3.96
4987 7014 6.134055 AGGGACTACTAGTGTATGTATGCAA 58.866 40.000 5.39 0.00 36.02 4.08
4989 7016 6.448006 GGACTACTAGTGTATGTATGCAAGG 58.552 44.000 5.39 0.00 0.00 3.61
4990 7017 6.264744 GGACTACTAGTGTATGTATGCAAGGA 59.735 42.308 5.39 0.00 0.00 3.36
4992 7019 7.661968 ACTACTAGTGTATGTATGCAAGGATG 58.338 38.462 5.39 0.00 0.00 3.51
4994 7021 5.602561 ACTAGTGTATGTATGCAAGGATGGA 59.397 40.000 0.00 0.00 0.00 3.41
4995 7022 5.573380 AGTGTATGTATGCAAGGATGGAT 57.427 39.130 0.00 0.00 41.00 3.41
4996 7023 5.311265 AGTGTATGTATGCAAGGATGGATG 58.689 41.667 0.00 0.00 38.19 3.51
4997 7024 4.456911 GTGTATGTATGCAAGGATGGATGG 59.543 45.833 0.00 0.00 38.19 3.51
4998 7025 4.350520 TGTATGTATGCAAGGATGGATGGA 59.649 41.667 0.00 0.00 38.19 3.41
5001 7028 3.395273 TGTATGCAAGGATGGATGGATGA 59.605 43.478 0.00 0.00 38.19 2.92
5006 7033 3.893200 GCAAGGATGGATGGATGATTCAA 59.107 43.478 0.00 0.00 0.00 2.69
5023 7054 4.428294 TTCAATGAGAGGATGGATGGAC 57.572 45.455 0.00 0.00 0.00 4.02
5032 7063 1.002544 GGATGGATGGACGATTCCTCC 59.997 57.143 0.00 0.00 43.31 4.30
5045 7076 2.194201 TTCCTCCGGGTTTGATTGAC 57.806 50.000 0.00 0.00 0.00 3.18
5083 7114 5.767168 AGAGGAGTTTTGAAATGGAAGTCTG 59.233 40.000 0.00 0.00 0.00 3.51
5086 7117 6.607198 AGGAGTTTTGAAATGGAAGTCTGAAA 59.393 34.615 0.00 0.00 0.00 2.69
5113 7144 7.665561 AAGTTGTTTTTACTTGCACACAAAT 57.334 28.000 0.00 0.00 34.68 2.32
5124 7286 4.868314 TGCACACAAATTTGGATGATCA 57.132 36.364 21.74 0.00 0.00 2.92
5129 7291 6.626402 GCACACAAATTTGGATGATCAGATCA 60.626 38.462 21.74 15.69 44.55 2.92
5131 7293 6.888088 ACACAAATTTGGATGATCAGATCAGA 59.112 34.615 21.74 2.76 43.53 3.27
5132 7294 7.560262 ACACAAATTTGGATGATCAGATCAGAT 59.440 33.333 21.74 0.00 43.53 2.90
5133 7295 8.076781 CACAAATTTGGATGATCAGATCAGATC 58.923 37.037 21.74 18.53 43.53 2.75
5142 7304 6.415206 TGATCAGATCAGATCATACTTGCA 57.585 37.500 22.78 2.88 46.92 4.08
5143 7305 6.221659 TGATCAGATCAGATCATACTTGCAC 58.778 40.000 22.78 0.00 46.92 4.57
5144 7306 5.866159 TCAGATCAGATCATACTTGCACT 57.134 39.130 13.14 0.00 0.00 4.40
5145 7307 5.598769 TCAGATCAGATCATACTTGCACTG 58.401 41.667 13.14 0.00 0.00 3.66
5146 7308 5.128335 TCAGATCAGATCATACTTGCACTGT 59.872 40.000 13.14 0.00 32.04 3.55
5147 7309 5.234543 CAGATCAGATCATACTTGCACTGTG 59.765 44.000 13.14 2.76 32.04 3.66
5148 7310 3.264947 TCAGATCATACTTGCACTGTGC 58.735 45.455 25.15 25.15 45.29 4.57
5149 7311 3.055602 TCAGATCATACTTGCACTGTGCT 60.056 43.478 30.43 15.31 45.31 4.40
5150 7312 3.309138 CAGATCATACTTGCACTGTGCTC 59.691 47.826 30.43 17.95 45.31 4.26
5151 7313 2.099141 TCATACTTGCACTGTGCTCC 57.901 50.000 30.43 5.68 45.31 4.70
5152 7314 1.089920 CATACTTGCACTGTGCTCCC 58.910 55.000 30.43 5.32 45.31 4.30
5153 7315 0.035056 ATACTTGCACTGTGCTCCCC 60.035 55.000 30.43 4.94 45.31 4.81
5158 7320 2.900106 GCACTGTGCTCCCCTCCTT 61.900 63.158 24.68 0.00 40.96 3.36
5172 7334 0.742635 CTCCTTGCTTCCCTTCTCGC 60.743 60.000 0.00 0.00 0.00 5.03
5178 7340 0.035915 GCTTCCCTTCTCGCCTTCTT 60.036 55.000 0.00 0.00 0.00 2.52
5194 7356 4.033709 CCTTCTTCCCACTTCCATAGAGA 58.966 47.826 0.00 0.00 0.00 3.10
5195 7357 4.141824 CCTTCTTCCCACTTCCATAGAGAC 60.142 50.000 0.00 0.00 0.00 3.36
5197 7359 2.176247 TCCCACTTCCATAGAGACCC 57.824 55.000 0.00 0.00 0.00 4.46
5198 7360 1.132500 CCCACTTCCATAGAGACCCC 58.868 60.000 0.00 0.00 0.00 4.95
5200 7362 0.753262 CACTTCCATAGAGACCCCCG 59.247 60.000 0.00 0.00 0.00 5.73
5203 7365 2.445845 CCATAGAGACCCCCGCCA 60.446 66.667 0.00 0.00 0.00 5.69
5204 7366 1.843376 CCATAGAGACCCCCGCCAT 60.843 63.158 0.00 0.00 0.00 4.40
5205 7367 1.372683 CATAGAGACCCCCGCCATG 59.627 63.158 0.00 0.00 0.00 3.66
5207 7369 2.972589 ATAGAGACCCCCGCCATGCT 62.973 60.000 0.00 0.00 0.00 3.79
5257 7439 0.309302 CTCCACCATCTCTAGCGACG 59.691 60.000 0.00 0.00 0.00 5.12
5258 7440 0.107361 TCCACCATCTCTAGCGACGA 60.107 55.000 0.00 0.00 0.00 4.20
5259 7441 0.029567 CCACCATCTCTAGCGACGAC 59.970 60.000 0.00 0.00 0.00 4.34
5260 7442 0.316278 CACCATCTCTAGCGACGACG 60.316 60.000 2.12 2.12 42.93 5.12
5261 7443 0.461516 ACCATCTCTAGCGACGACGA 60.462 55.000 12.29 0.00 42.66 4.20
5262 7444 0.042013 CCATCTCTAGCGACGACGAC 60.042 60.000 12.29 2.46 42.66 4.34
5267 7449 2.356069 TCTCTAGCGACGACGACTACTA 59.644 50.000 12.29 2.00 42.66 1.82
5268 7450 2.455032 TCTAGCGACGACGACTACTAC 58.545 52.381 12.29 0.00 42.66 2.73
5269 7451 2.098280 TCTAGCGACGACGACTACTACT 59.902 50.000 12.29 0.00 42.66 2.57
5270 7452 2.568696 AGCGACGACGACTACTACTA 57.431 50.000 12.29 0.00 42.66 1.82
5271 7453 2.189342 AGCGACGACGACTACTACTAC 58.811 52.381 12.29 0.00 42.66 2.73
5272 7454 1.256635 GCGACGACGACTACTACTACC 59.743 57.143 12.29 0.00 42.66 3.18
5273 7455 2.803451 CGACGACGACTACTACTACCT 58.197 52.381 0.00 0.00 42.66 3.08
5274 7456 2.786578 CGACGACGACTACTACTACCTC 59.213 54.545 0.00 0.00 42.66 3.85
5275 7457 3.120041 GACGACGACTACTACTACCTCC 58.880 54.545 0.00 0.00 0.00 4.30
5276 7458 2.497675 ACGACGACTACTACTACCTCCA 59.502 50.000 0.00 0.00 0.00 3.86
5277 7459 3.055819 ACGACGACTACTACTACCTCCAA 60.056 47.826 0.00 0.00 0.00 3.53
5278 7460 3.555139 CGACGACTACTACTACCTCCAAG 59.445 52.174 0.00 0.00 0.00 3.61
5279 7461 3.876320 GACGACTACTACTACCTCCAAGG 59.124 52.174 0.00 0.00 42.49 3.61
5322 10350 0.249784 CTCCTGACCTCATCGGCATG 60.250 60.000 0.00 0.00 35.61 4.06
5334 10370 2.132740 TCGGCATGCTTGTTTGTTTC 57.867 45.000 18.92 0.00 0.00 2.78
5349 10385 8.988064 TTGTTTGTTTCAGCTTTAATGTGTTA 57.012 26.923 0.00 0.00 0.00 2.41
5350 10386 8.627487 TGTTTGTTTCAGCTTTAATGTGTTAG 57.373 30.769 0.00 0.00 0.00 2.34
5358 10394 4.627467 AGCTTTAATGTGTTAGTGAGCTCG 59.373 41.667 9.64 0.00 32.08 5.03
5375 10411 0.781787 TCGACGCAAATGTTCACGAG 59.218 50.000 0.00 0.00 0.00 4.18
5379 10415 0.168788 CGCAAATGTTCACGAGGCAT 59.831 50.000 0.00 0.00 0.00 4.40
5398 10434 0.111446 TGGCCACAAAATCTTCCCGA 59.889 50.000 0.00 0.00 0.00 5.14
5421 10457 2.203771 CCGCCTACTCTGCTAGGGG 61.204 68.421 6.79 6.79 43.45 4.79
5422 10458 1.152735 CGCCTACTCTGCTAGGGGA 60.153 63.158 7.78 0.00 45.61 4.81
5423 10459 0.755698 CGCCTACTCTGCTAGGGGAA 60.756 60.000 7.78 0.00 45.61 3.97
5424 10460 1.044611 GCCTACTCTGCTAGGGGAAG 58.955 60.000 0.00 0.00 34.75 3.46
5425 10461 1.689892 GCCTACTCTGCTAGGGGAAGT 60.690 57.143 0.00 0.00 34.75 3.01
5427 10463 3.492337 CCTACTCTGCTAGGGGAAGTAG 58.508 54.545 0.00 0.00 30.95 2.57
5431 10467 3.271490 ACTCTGCTAGGGGAAGTAGGTAA 59.729 47.826 0.00 0.00 30.87 2.85
5435 10471 2.622470 GCTAGGGGAAGTAGGTAAGTCG 59.378 54.545 0.00 0.00 0.00 4.18
5445 10481 1.445582 GGTAAGTCGCCGGTGTCAG 60.446 63.158 16.01 0.00 0.00 3.51
5484 10520 7.645340 CGAAATTAGGCTCAATTCCATACAAAG 59.355 37.037 0.00 0.00 0.00 2.77
5485 10521 5.835113 TTAGGCTCAATTCCATACAAAGC 57.165 39.130 0.00 0.00 0.00 3.51
5489 10525 4.427312 GCTCAATTCCATACAAAGCCTTG 58.573 43.478 0.00 0.00 38.61 3.61
5526 10563 9.449719 AGTGGTCATATTTTTAAGAGTAGGTTG 57.550 33.333 0.00 0.00 0.00 3.77
5555 10592 8.685838 TCTAAAAACAAGTACATTAGGTTGCT 57.314 30.769 0.00 0.00 0.00 3.91
5556 10593 9.781633 TCTAAAAACAAGTACATTAGGTTGCTA 57.218 29.630 0.00 0.00 0.00 3.49
5560 10597 9.734984 AAAACAAGTACATTAGGTTGCTATAGT 57.265 29.630 0.84 0.00 0.00 2.12
5562 10599 9.813446 AACAAGTACATTAGGTTGCTATAGTAC 57.187 33.333 0.84 0.42 0.00 2.73
5563 10600 8.974238 ACAAGTACATTAGGTTGCTATAGTACA 58.026 33.333 0.84 0.00 34.58 2.90
5564 10601 9.811995 CAAGTACATTAGGTTGCTATAGTACAA 57.188 33.333 0.84 0.00 34.58 2.41
5565 10602 9.813446 AAGTACATTAGGTTGCTATAGTACAAC 57.187 33.333 12.38 12.38 44.29 3.32
5574 10611 6.579865 GTTGCTATAGTACAACCCTACATGT 58.420 40.000 2.69 2.69 40.19 3.21
5575 10612 6.401047 TGCTATAGTACAACCCTACATGTC 57.599 41.667 0.00 0.00 0.00 3.06
5576 10613 5.894964 TGCTATAGTACAACCCTACATGTCA 59.105 40.000 0.00 0.00 0.00 3.58
5577 10614 6.183360 TGCTATAGTACAACCCTACATGTCAC 60.183 42.308 0.00 0.00 0.00 3.67
5578 10615 6.040616 GCTATAGTACAACCCTACATGTCACT 59.959 42.308 0.00 0.00 0.00 3.41
5579 10616 7.230108 GCTATAGTACAACCCTACATGTCACTA 59.770 40.741 0.00 0.00 0.00 2.74
5580 10617 9.298250 CTATAGTACAACCCTACATGTCACTAT 57.702 37.037 0.00 6.58 34.51 2.12
5581 10618 6.222038 AGTACAACCCTACATGTCACTATG 57.778 41.667 0.00 0.17 0.00 2.23
5582 10619 5.720041 AGTACAACCCTACATGTCACTATGT 59.280 40.000 0.00 6.68 43.34 2.29
5583 10620 5.499004 ACAACCCTACATGTCACTATGTT 57.501 39.130 0.00 0.00 41.31 2.71
5584 10621 5.245531 ACAACCCTACATGTCACTATGTTG 58.754 41.667 0.00 11.11 41.31 3.33
5585 10622 5.221843 ACAACCCTACATGTCACTATGTTGT 60.222 40.000 0.00 11.72 41.31 3.32
5586 10623 5.499004 ACCCTACATGTCACTATGTTGTT 57.501 39.130 0.00 0.00 41.31 2.83
5587 10624 5.876357 ACCCTACATGTCACTATGTTGTTT 58.124 37.500 0.00 0.00 41.31 2.83
5588 10625 6.303839 ACCCTACATGTCACTATGTTGTTTT 58.696 36.000 0.00 0.00 41.31 2.43
5589 10626 6.206634 ACCCTACATGTCACTATGTTGTTTTG 59.793 38.462 0.00 0.00 41.31 2.44
5590 10627 6.429692 CCCTACATGTCACTATGTTGTTTTGA 59.570 38.462 0.00 0.00 41.31 2.69
5591 10628 7.361201 CCCTACATGTCACTATGTTGTTTTGAG 60.361 40.741 0.00 0.00 41.31 3.02
5592 10629 6.317789 ACATGTCACTATGTTGTTTTGAGG 57.682 37.500 0.00 0.00 38.05 3.86
5593 10630 5.827797 ACATGTCACTATGTTGTTTTGAGGT 59.172 36.000 0.00 0.00 38.05 3.85
5594 10631 6.321181 ACATGTCACTATGTTGTTTTGAGGTT 59.679 34.615 0.00 0.00 38.05 3.50
5595 10632 6.767524 TGTCACTATGTTGTTTTGAGGTTT 57.232 33.333 0.00 0.00 0.00 3.27
5596 10633 7.164230 TGTCACTATGTTGTTTTGAGGTTTT 57.836 32.000 0.00 0.00 0.00 2.43
5597 10634 7.254852 TGTCACTATGTTGTTTTGAGGTTTTC 58.745 34.615 0.00 0.00 0.00 2.29
5598 10635 7.122055 TGTCACTATGTTGTTTTGAGGTTTTCT 59.878 33.333 0.00 0.00 0.00 2.52
5599 10636 7.973944 GTCACTATGTTGTTTTGAGGTTTTCTT 59.026 33.333 0.00 0.00 0.00 2.52
5600 10637 8.188139 TCACTATGTTGTTTTGAGGTTTTCTTC 58.812 33.333 0.00 0.00 0.00 2.87
5601 10638 8.190784 CACTATGTTGTTTTGAGGTTTTCTTCT 58.809 33.333 0.00 0.00 0.00 2.85
5602 10639 8.749354 ACTATGTTGTTTTGAGGTTTTCTTCTT 58.251 29.630 0.00 0.00 0.00 2.52
5603 10640 9.237846 CTATGTTGTTTTGAGGTTTTCTTCTTC 57.762 33.333 0.00 0.00 0.00 2.87
5604 10641 7.227049 TGTTGTTTTGAGGTTTTCTTCTTCT 57.773 32.000 0.00 0.00 0.00 2.85
5605 10642 7.090173 TGTTGTTTTGAGGTTTTCTTCTTCTG 58.910 34.615 0.00 0.00 0.00 3.02
5606 10643 7.040062 TGTTGTTTTGAGGTTTTCTTCTTCTGA 60.040 33.333 0.00 0.00 0.00 3.27
5607 10644 7.461182 TGTTTTGAGGTTTTCTTCTTCTGAA 57.539 32.000 0.00 0.00 0.00 3.02
5608 10645 7.891561 TGTTTTGAGGTTTTCTTCTTCTGAAA 58.108 30.769 0.00 0.00 0.00 2.69
5609 10646 8.364142 TGTTTTGAGGTTTTCTTCTTCTGAAAA 58.636 29.630 0.00 0.00 39.96 2.29
5610 10647 9.371136 GTTTTGAGGTTTTCTTCTTCTGAAAAT 57.629 29.630 5.20 0.00 42.76 1.82
5611 10648 9.586435 TTTTGAGGTTTTCTTCTTCTGAAAATC 57.414 29.630 5.20 4.89 42.76 2.17
5612 10649 7.277174 TGAGGTTTTCTTCTTCTGAAAATCC 57.723 36.000 8.13 9.18 42.34 3.01
5613 10650 6.017109 TGAGGTTTTCTTCTTCTGAAAATCCG 60.017 38.462 8.13 0.00 42.34 4.18
5614 10651 4.917998 GGTTTTCTTCTTCTGAAAATCCGC 59.082 41.667 5.20 0.00 42.76 5.54
5615 10652 5.507315 GGTTTTCTTCTTCTGAAAATCCGCA 60.507 40.000 5.20 0.00 42.76 5.69
5616 10653 5.766150 TTTCTTCTTCTGAAAATCCGCAA 57.234 34.783 0.00 0.00 31.45 4.85
5617 10654 5.766150 TTCTTCTTCTGAAAATCCGCAAA 57.234 34.783 0.00 0.00 0.00 3.68
5618 10655 5.964958 TCTTCTTCTGAAAATCCGCAAAT 57.035 34.783 0.00 0.00 0.00 2.32
5619 10656 6.331369 TCTTCTTCTGAAAATCCGCAAATT 57.669 33.333 0.00 0.00 0.00 1.82
5620 10657 6.748132 TCTTCTTCTGAAAATCCGCAAATTT 58.252 32.000 0.00 0.00 0.00 1.82
5621 10658 6.642131 TCTTCTTCTGAAAATCCGCAAATTTG 59.358 34.615 14.03 14.03 0.00 2.32
5622 10659 6.083098 TCTTCTGAAAATCCGCAAATTTGA 57.917 33.333 22.31 1.15 0.00 2.69
5623 10660 6.511416 TCTTCTGAAAATCCGCAAATTTGAA 58.489 32.000 22.31 6.59 0.00 2.69
5624 10661 6.983307 TCTTCTGAAAATCCGCAAATTTGAAA 59.017 30.769 22.31 6.23 0.00 2.69
5625 10662 7.493971 TCTTCTGAAAATCCGCAAATTTGAAAA 59.506 29.630 22.31 5.87 0.00 2.29
5626 10663 6.942891 TCTGAAAATCCGCAAATTTGAAAAC 58.057 32.000 22.31 3.00 0.00 2.43
5627 10664 6.536582 TCTGAAAATCCGCAAATTTGAAAACA 59.463 30.769 22.31 8.67 0.00 2.83
5628 10665 7.226325 TCTGAAAATCCGCAAATTTGAAAACAT 59.774 29.630 22.31 2.97 0.00 2.71
5629 10666 7.701445 TGAAAATCCGCAAATTTGAAAACATT 58.299 26.923 22.31 8.99 0.00 2.71
5630 10667 7.854916 TGAAAATCCGCAAATTTGAAAACATTC 59.145 29.630 22.31 16.49 0.00 2.67
5631 10668 7.495135 AAATCCGCAAATTTGAAAACATTCT 57.505 28.000 22.31 0.00 0.00 2.40
5632 10669 7.495135 AATCCGCAAATTTGAAAACATTCTT 57.505 28.000 22.31 0.00 0.00 2.52
5633 10670 6.284475 TCCGCAAATTTGAAAACATTCTTG 57.716 33.333 22.31 0.00 0.00 3.02
5634 10671 5.236047 TCCGCAAATTTGAAAACATTCTTGG 59.764 36.000 22.31 5.33 0.00 3.61
5635 10672 5.442402 CGCAAATTTGAAAACATTCTTGGG 58.558 37.500 22.31 0.00 0.00 4.12
5636 10673 5.214417 GCAAATTTGAAAACATTCTTGGGC 58.786 37.500 22.31 0.00 0.00 5.36
5637 10674 5.008911 GCAAATTTGAAAACATTCTTGGGCT 59.991 36.000 22.31 0.00 0.00 5.19
5638 10675 6.459985 GCAAATTTGAAAACATTCTTGGGCTT 60.460 34.615 22.31 0.00 0.00 4.35
5639 10676 7.482474 CAAATTTGAAAACATTCTTGGGCTTT 58.518 30.769 13.08 0.00 0.00 3.51
5640 10677 8.619546 CAAATTTGAAAACATTCTTGGGCTTTA 58.380 29.630 13.08 0.00 0.00 1.85
5641 10678 7.728847 ATTTGAAAACATTCTTGGGCTTTAC 57.271 32.000 0.00 0.00 0.00 2.01
5642 10679 5.860941 TGAAAACATTCTTGGGCTTTACA 57.139 34.783 0.00 0.00 0.00 2.41
5643 10680 5.596845 TGAAAACATTCTTGGGCTTTACAC 58.403 37.500 0.00 0.00 0.00 2.90
5644 10681 5.362430 TGAAAACATTCTTGGGCTTTACACT 59.638 36.000 0.00 0.00 0.00 3.55
5645 10682 5.453567 AAACATTCTTGGGCTTTACACTC 57.546 39.130 0.00 0.00 0.00 3.51
5646 10683 4.373156 ACATTCTTGGGCTTTACACTCT 57.627 40.909 0.00 0.00 0.00 3.24
5647 10684 4.729868 ACATTCTTGGGCTTTACACTCTT 58.270 39.130 0.00 0.00 0.00 2.85
5648 10685 4.762251 ACATTCTTGGGCTTTACACTCTTC 59.238 41.667 0.00 0.00 0.00 2.87
5649 10686 3.040147 TCTTGGGCTTTACACTCTTCG 57.960 47.619 0.00 0.00 0.00 3.79
5650 10687 2.367567 TCTTGGGCTTTACACTCTTCGT 59.632 45.455 0.00 0.00 0.00 3.85
5660 10697 2.386661 CACTCTTCGTGGGCTACATT 57.613 50.000 0.88 0.00 40.02 2.71
5661 10698 2.271800 CACTCTTCGTGGGCTACATTC 58.728 52.381 0.88 0.00 40.02 2.67
5662 10699 2.093973 CACTCTTCGTGGGCTACATTCT 60.094 50.000 0.88 0.00 40.02 2.40
5663 10700 2.166664 ACTCTTCGTGGGCTACATTCTC 59.833 50.000 0.88 0.00 0.00 2.87
5664 10701 1.480954 TCTTCGTGGGCTACATTCTCC 59.519 52.381 0.88 0.00 0.00 3.71
5665 10702 1.207089 CTTCGTGGGCTACATTCTCCA 59.793 52.381 0.88 0.00 0.00 3.86
5666 10703 0.824109 TCGTGGGCTACATTCTCCAG 59.176 55.000 0.88 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 15 4.455533 TGGATGTTGCTTGTCTAATGTGTC 59.544 41.667 0.00 0.00 0.00 3.67
20 22 3.441222 CAGCATTGGATGTTGCTTGTCTA 59.559 43.478 0.00 0.00 46.71 2.59
71 73 2.496070 TGTGCGCTATGTTCTAGGTTCT 59.504 45.455 9.73 0.00 0.00 3.01
102 106 0.613260 CATGAGGTCGGTTGAAGGGA 59.387 55.000 0.00 0.00 0.00 4.20
111 115 1.418334 AAGGATCTCCATGAGGTCGG 58.582 55.000 0.00 0.00 40.42 4.79
149 153 3.834813 ACTGGAGCTGAGTTCATTCACTA 59.165 43.478 0.00 0.00 0.00 2.74
152 156 2.027745 GGACTGGAGCTGAGTTCATTCA 60.028 50.000 0.00 0.00 0.00 2.57
157 161 1.261480 TGAGGACTGGAGCTGAGTTC 58.739 55.000 0.00 0.00 0.00 3.01
159 163 1.554160 CATTGAGGACTGGAGCTGAGT 59.446 52.381 0.00 0.00 0.00 3.41
160 164 1.554160 ACATTGAGGACTGGAGCTGAG 59.446 52.381 0.00 0.00 0.00 3.35
164 168 2.626840 GAAGACATTGAGGACTGGAGC 58.373 52.381 0.00 0.00 0.00 4.70
187 191 0.722799 GTCTTCAAAAGCAGCGCGAC 60.723 55.000 12.10 0.04 0.00 5.19
190 194 0.386478 CAGGTCTTCAAAAGCAGCGC 60.386 55.000 0.00 0.00 0.00 5.92
192 196 0.038801 GGCAGGTCTTCAAAAGCAGC 60.039 55.000 0.00 0.00 0.00 5.25
195 199 1.039856 TTGGGCAGGTCTTCAAAAGC 58.960 50.000 0.00 0.00 0.00 3.51
196 200 6.547141 TCATATATTGGGCAGGTCTTCAAAAG 59.453 38.462 0.00 0.00 0.00 2.27
199 203 5.369404 TCTCATATATTGGGCAGGTCTTCAA 59.631 40.000 0.00 0.00 0.00 2.69
207 211 5.766670 TGCTCTTTTCTCATATATTGGGCAG 59.233 40.000 0.00 0.00 0.00 4.85
262 275 5.306532 AGCAACATTTGAGCACAAGATAG 57.693 39.130 0.00 0.00 37.32 2.08
289 302 0.171007 CGCCATTTGGTTTGCTCGAT 59.829 50.000 0.00 0.00 37.57 3.59
295 308 0.950071 CCTTGCCGCCATTTGGTTTG 60.950 55.000 0.00 0.00 37.57 2.93
318 331 2.365293 GCAGGGAAAGGTTTCACAATGT 59.635 45.455 7.44 0.00 42.99 2.71
321 334 1.342474 TGGCAGGGAAAGGTTTCACAA 60.342 47.619 7.44 0.00 42.99 3.33
330 343 2.806945 TTCCTACATGGCAGGGAAAG 57.193 50.000 13.90 0.00 35.27 2.62
336 349 6.599244 TCTTGTTATTCTTTCCTACATGGCAG 59.401 38.462 0.00 0.00 35.26 4.85
337 350 6.480763 TCTTGTTATTCTTTCCTACATGGCA 58.519 36.000 0.00 0.00 35.26 4.92
338 351 6.823689 TCTCTTGTTATTCTTTCCTACATGGC 59.176 38.462 0.00 0.00 35.26 4.40
376 392 5.757320 GGAACTGATCTATGTCCTGACAATG 59.243 44.000 3.79 0.86 45.41 2.82
382 398 4.080919 TGTTGGGAACTGATCTATGTCCTG 60.081 45.833 0.00 0.00 0.00 3.86
410 426 6.224665 TGAGCAAATTTTAGATCCATTGGG 57.775 37.500 2.09 0.00 0.00 4.12
441 457 3.096852 TGGTGATGTCCTGAGTTCGTAT 58.903 45.455 0.00 0.00 0.00 3.06
477 493 4.020617 CTGGCTCGGGTGGCTTCA 62.021 66.667 0.00 0.00 0.00 3.02
570 587 4.400961 AGCTCCTGCCGGTTGCTC 62.401 66.667 1.90 0.00 42.00 4.26
571 588 4.400961 GAGCTCCTGCCGGTTGCT 62.401 66.667 14.53 14.53 41.29 3.91
572 589 4.400961 AGAGCTCCTGCCGGTTGC 62.401 66.667 10.93 0.44 40.80 4.17
573 590 2.435586 CAGAGCTCCTGCCGGTTG 60.436 66.667 10.93 0.00 40.80 3.77
580 597 5.882557 TCTTAATAAAAAGGCAGAGCTCCTG 59.117 40.000 10.93 9.35 45.67 3.86
581 598 6.067217 TCTTAATAAAAAGGCAGAGCTCCT 57.933 37.500 10.93 0.00 34.90 3.69
582 599 6.759497 TTCTTAATAAAAAGGCAGAGCTCC 57.241 37.500 10.93 0.00 0.00 4.70
583 600 9.133627 CTTTTTCTTAATAAAAAGGCAGAGCTC 57.866 33.333 22.09 5.27 45.97 4.09
605 622 9.807921 TCCTTATAAACTGGTCAATTCTCTTTT 57.192 29.630 0.00 0.00 0.00 2.27
606 623 9.807921 TTCCTTATAAACTGGTCAATTCTCTTT 57.192 29.630 0.00 0.00 0.00 2.52
607 624 9.807921 TTTCCTTATAAACTGGTCAATTCTCTT 57.192 29.630 0.00 0.00 0.00 2.85
608 625 9.807921 TTTTCCTTATAAACTGGTCAATTCTCT 57.192 29.630 0.00 0.00 0.00 3.10
609 626 9.841880 GTTTTCCTTATAAACTGGTCAATTCTC 57.158 33.333 0.00 0.00 33.71 2.87
610 627 9.588096 AGTTTTCCTTATAAACTGGTCAATTCT 57.412 29.630 0.00 0.00 42.54 2.40
620 637 4.913784 TCGGCCAGTTTTCCTTATAAACT 58.086 39.130 2.24 0.00 44.38 2.66
621 638 5.632244 TTCGGCCAGTTTTCCTTATAAAC 57.368 39.130 2.24 0.00 36.08 2.01
622 639 6.448852 GTTTTCGGCCAGTTTTCCTTATAAA 58.551 36.000 2.24 0.00 0.00 1.40
623 640 5.047872 GGTTTTCGGCCAGTTTTCCTTATAA 60.048 40.000 2.24 0.00 0.00 0.98
624 641 4.460034 GGTTTTCGGCCAGTTTTCCTTATA 59.540 41.667 2.24 0.00 0.00 0.98
625 642 3.257375 GGTTTTCGGCCAGTTTTCCTTAT 59.743 43.478 2.24 0.00 0.00 1.73
626 643 2.624364 GGTTTTCGGCCAGTTTTCCTTA 59.376 45.455 2.24 0.00 0.00 2.69
627 644 1.411246 GGTTTTCGGCCAGTTTTCCTT 59.589 47.619 2.24 0.00 0.00 3.36
628 645 1.037493 GGTTTTCGGCCAGTTTTCCT 58.963 50.000 2.24 0.00 0.00 3.36
629 646 0.747852 TGGTTTTCGGCCAGTTTTCC 59.252 50.000 2.24 0.00 0.00 3.13
630 647 2.198406 GTTGGTTTTCGGCCAGTTTTC 58.802 47.619 2.24 0.00 37.31 2.29
631 648 1.550976 TGTTGGTTTTCGGCCAGTTTT 59.449 42.857 2.24 0.00 37.31 2.43
632 649 1.187087 TGTTGGTTTTCGGCCAGTTT 58.813 45.000 2.24 0.00 37.31 2.66
633 650 1.408969 ATGTTGGTTTTCGGCCAGTT 58.591 45.000 2.24 0.00 37.31 3.16
634 651 1.068434 CAATGTTGGTTTTCGGCCAGT 59.932 47.619 2.24 0.00 37.31 4.00
635 652 1.068434 ACAATGTTGGTTTTCGGCCAG 59.932 47.619 2.24 0.00 37.31 4.85
636 653 1.115467 ACAATGTTGGTTTTCGGCCA 58.885 45.000 2.24 0.00 0.00 5.36
637 654 2.232756 AACAATGTTGGTTTTCGGCC 57.767 45.000 0.00 0.00 0.00 6.13
638 655 5.915812 ATTTAACAATGTTGGTTTTCGGC 57.084 34.783 9.15 0.00 0.00 5.54
639 656 7.122550 CACAATTTAACAATGTTGGTTTTCGG 58.877 34.615 9.15 0.00 0.00 4.30
640 657 7.634048 CACACAATTTAACAATGTTGGTTTTCG 59.366 33.333 9.15 0.00 0.00 3.46
641 658 8.660373 TCACACAATTTAACAATGTTGGTTTTC 58.340 29.630 9.15 0.00 0.00 2.29
642 659 8.553459 TCACACAATTTAACAATGTTGGTTTT 57.447 26.923 9.15 0.00 0.00 2.43
643 660 8.447053 GTTCACACAATTTAACAATGTTGGTTT 58.553 29.630 9.15 0.00 0.00 3.27
644 661 7.604164 TGTTCACACAATTTAACAATGTTGGTT 59.396 29.630 9.15 0.00 0.00 3.67
645 662 7.099764 TGTTCACACAATTTAACAATGTTGGT 58.900 30.769 9.15 0.00 0.00 3.67
646 663 7.531280 TGTTCACACAATTTAACAATGTTGG 57.469 32.000 9.15 0.00 0.00 3.77
653 670 9.891828 GATGACTTATGTTCACACAATTTAACA 57.108 29.630 0.00 0.00 36.16 2.41
654 671 9.891828 TGATGACTTATGTTCACACAATTTAAC 57.108 29.630 0.00 0.00 36.16 2.01
689 706 6.600032 ACTGGATATTTGCACACGGTATTAAA 59.400 34.615 0.00 0.00 0.00 1.52
723 740 9.758651 TTATTCTATCTTTTCGCTTATGTGCTA 57.241 29.630 0.00 0.00 0.00 3.49
733 750 6.494842 TGCACCAATTATTCTATCTTTTCGC 58.505 36.000 0.00 0.00 0.00 4.70
754 771 9.474313 AACTTGACTCCCTAATAAAATTATGCA 57.526 29.630 0.00 0.00 0.00 3.96
775 795 5.178809 CACCTAACCGAACTCCTAAAACTTG 59.821 44.000 0.00 0.00 0.00 3.16
777 797 4.346127 ACACCTAACCGAACTCCTAAAACT 59.654 41.667 0.00 0.00 0.00 2.66
778 798 4.635223 ACACCTAACCGAACTCCTAAAAC 58.365 43.478 0.00 0.00 0.00 2.43
779 799 4.961438 ACACCTAACCGAACTCCTAAAA 57.039 40.909 0.00 0.00 0.00 1.52
780 800 4.961438 AACACCTAACCGAACTCCTAAA 57.039 40.909 0.00 0.00 0.00 1.85
781 801 4.961438 AAACACCTAACCGAACTCCTAA 57.039 40.909 0.00 0.00 0.00 2.69
782 802 4.961438 AAAACACCTAACCGAACTCCTA 57.039 40.909 0.00 0.00 0.00 2.94
783 803 3.851458 AAAACACCTAACCGAACTCCT 57.149 42.857 0.00 0.00 0.00 3.69
815 835 8.762481 AACCTTTAACTCCTCAACTTAAATGT 57.238 30.769 0.00 0.00 0.00 2.71
829 849 9.961265 AAACACTTGCTTATAAACCTTTAACTC 57.039 29.630 0.00 0.00 0.00 3.01
830 850 9.744468 CAAACACTTGCTTATAAACCTTTAACT 57.256 29.630 0.00 0.00 0.00 2.24
831 851 9.738832 TCAAACACTTGCTTATAAACCTTTAAC 57.261 29.630 0.00 0.00 32.14 2.01
834 854 8.637986 TCATCAAACACTTGCTTATAAACCTTT 58.362 29.630 0.00 0.00 32.14 3.11
904 924 2.234896 TCGGGTGTGTGTATAGGGAA 57.765 50.000 0.00 0.00 0.00 3.97
911 931 2.828877 CTCTGTTTTCGGGTGTGTGTA 58.171 47.619 0.00 0.00 0.00 2.90
938 958 1.228552 GAAGCACAAGGGGAAGGCA 60.229 57.895 0.00 0.00 0.00 4.75
939 959 0.962855 GAGAAGCACAAGGGGAAGGC 60.963 60.000 0.00 0.00 0.00 4.35
951 972 1.626356 CGGAATGGAGGGGAGAAGCA 61.626 60.000 0.00 0.00 0.00 3.91
1108 1363 1.152355 CAAGGGGTGGAAGGGCAAA 60.152 57.895 0.00 0.00 0.00 3.68
1136 1392 1.301677 GCCTTGTTCTTGCCGGAGAG 61.302 60.000 5.05 0.90 0.00 3.20
1567 1823 9.753674 ATTGGAGAGTGGAATTAGTAATTTGAA 57.246 29.630 9.47 0.00 0.00 2.69
1576 1833 5.163163 TGGATGGATTGGAGAGTGGAATTAG 60.163 44.000 0.00 0.00 0.00 1.73
1578 1835 3.528905 TGGATGGATTGGAGAGTGGAATT 59.471 43.478 0.00 0.00 0.00 2.17
1579 1836 3.125656 TGGATGGATTGGAGAGTGGAAT 58.874 45.455 0.00 0.00 0.00 3.01
1580 1837 2.561187 TGGATGGATTGGAGAGTGGAA 58.439 47.619 0.00 0.00 0.00 3.53
1581 1838 2.268796 TGGATGGATTGGAGAGTGGA 57.731 50.000 0.00 0.00 0.00 4.02
1583 1840 5.484644 AGATAGATGGATGGATTGGAGAGTG 59.515 44.000 0.00 0.00 0.00 3.51
1584 1841 5.663631 AGATAGATGGATGGATTGGAGAGT 58.336 41.667 0.00 0.00 0.00 3.24
1586 1843 7.672122 CATAGATAGATGGATGGATTGGAGA 57.328 40.000 0.00 0.00 0.00 3.71
1600 1857 3.176552 GCATCTGCGCCATAGATAGAT 57.823 47.619 4.18 0.89 33.30 1.98
1862 2119 4.272489 CCCTGAATCTGAATGCCTGTTTA 58.728 43.478 0.00 0.00 0.00 2.01
1867 2124 0.106318 GGCCCTGAATCTGAATGCCT 60.106 55.000 0.00 0.00 34.61 4.75
1868 2125 0.396139 TGGCCCTGAATCTGAATGCC 60.396 55.000 0.00 0.00 37.90 4.40
1869 2126 1.612463 GATGGCCCTGAATCTGAATGC 59.388 52.381 0.00 0.00 0.00 3.56
1919 2186 6.934645 TGTAACCCTGAAGAAATGTCAGTTAG 59.065 38.462 1.14 0.00 40.83 2.34
1938 2205 5.507315 CCAAATCAGTCAACCAACTGTAACC 60.507 44.000 4.15 0.00 45.57 2.85
2239 2525 1.162698 CTTGTGTGGTGGAGAGCATG 58.837 55.000 0.00 0.00 30.75 4.06
2267 2555 1.466360 GGTCAGTTGCATTGCACGATC 60.466 52.381 11.66 5.18 38.71 3.69
2268 2556 0.523072 GGTCAGTTGCATTGCACGAT 59.477 50.000 11.66 0.00 38.71 3.73
2269 2557 1.514678 GGGTCAGTTGCATTGCACGA 61.515 55.000 11.66 5.68 38.71 4.35
2270 2558 1.081242 GGGTCAGTTGCATTGCACG 60.081 57.895 11.66 3.18 38.71 5.34
2282 2570 4.819105 TGTGTGTAGATAAAGGGGTCAG 57.181 45.455 0.00 0.00 0.00 3.51
2290 2578 8.283992 CGTAAACCAAACATGTGTGTAGATAAA 58.716 33.333 14.95 0.00 37.67 1.40
2322 2621 1.936203 GCTCGCCAAACATGCAATTGT 60.936 47.619 7.40 0.00 0.00 2.71
2352 2755 5.914033 TGATAGAACAGGTAGTAATGGCAC 58.086 41.667 0.00 0.00 0.00 5.01
2353 2756 6.554982 AGATGATAGAACAGGTAGTAATGGCA 59.445 38.462 0.00 0.00 0.00 4.92
2372 2844 9.899661 GATGTACTAGGTAGATACAGAGATGAT 57.100 37.037 0.00 0.00 32.58 2.45
2380 2852 7.670140 CCCAATCAGATGTACTAGGTAGATACA 59.330 40.741 0.00 0.00 33.54 2.29
2406 2878 2.497107 ATTATGCAATTCCACAGCGC 57.503 45.000 0.00 0.00 0.00 5.92
2424 2896 3.119849 CGATTCGAAACAAGGCTCCAAAT 60.120 43.478 0.00 0.00 0.00 2.32
2440 2913 3.059834 ACGTATTTTTCCGTGACGATTCG 59.940 43.478 6.54 4.14 37.00 3.34
2450 2923 1.202031 GCTGGCAGACGTATTTTTCCG 60.202 52.381 20.86 0.00 0.00 4.30
2452 2925 3.764885 ATGCTGGCAGACGTATTTTTC 57.235 42.857 20.86 0.00 0.00 2.29
2483 2957 6.245408 ACAGATAAAAGGGTCACTTGCATTA 58.755 36.000 0.00 0.00 39.96 1.90
2578 3052 0.105964 ACAGCACGCCTCTGTTTACA 59.894 50.000 0.00 0.00 41.61 2.41
2681 3160 1.987770 CCAAATAGCAAACGCAAGCTG 59.012 47.619 6.37 0.00 41.97 4.24
2693 3172 4.259952 GGCAGGTCCCCAAATAGC 57.740 61.111 0.00 0.00 0.00 2.97
2726 3205 2.172505 AGGAAATATGATGACGGGTGCA 59.827 45.455 0.00 0.00 0.00 4.57
3036 3539 4.353788 TGGGTAGCAGGCTATGGATAAAAT 59.646 41.667 4.06 0.00 0.00 1.82
3047 3550 1.895131 CAACAAATTGGGTAGCAGGCT 59.105 47.619 0.00 0.00 31.63 4.58
3157 3693 3.334583 AGCAGAAACGATTAGGAAGCA 57.665 42.857 0.00 0.00 0.00 3.91
3550 4131 8.912614 TTCTTATACTCTTCTAAACTCCCCTT 57.087 34.615 0.00 0.00 0.00 3.95
3660 4241 5.491070 TCACTTGACAATGATTACCTCTGG 58.509 41.667 0.00 0.00 0.00 3.86
3834 4415 8.671028 TGAGTCCTTTGACAAAAAGTAAAGTAC 58.329 33.333 1.62 0.00 44.33 2.73
3837 4418 6.972901 GGTGAGTCCTTTGACAAAAAGTAAAG 59.027 38.462 1.62 0.00 44.33 1.85
3842 4423 3.954258 AGGGTGAGTCCTTTGACAAAAAG 59.046 43.478 1.62 0.00 44.33 2.27
3882 4463 3.683365 AGCCCACAATTCCATTTCAAC 57.317 42.857 0.00 0.00 0.00 3.18
3891 4472 2.508526 ACAGAGTCAAGCCCACAATTC 58.491 47.619 0.00 0.00 0.00 2.17
3925 4511 4.340894 AACTACGCACATGTTTGCATAG 57.659 40.909 9.17 9.17 42.63 2.23
3935 4521 2.456000 CGCAGGAAACTACGCACAT 58.544 52.632 0.00 0.00 40.91 3.21
3953 4539 1.685180 GGACTTGGGACTTAATGGGGC 60.685 57.143 0.00 0.00 0.00 5.80
3957 4543 1.923148 AGGGGGACTTGGGACTTAATG 59.077 52.381 0.00 0.00 0.00 1.90
3990 4576 5.093236 TGAGGTCCCTGGATTATGATACT 57.907 43.478 0.00 0.00 0.00 2.12
3992 4578 6.159575 TGTTTTGAGGTCCCTGGATTATGATA 59.840 38.462 0.00 0.00 0.00 2.15
3998 4584 3.334881 AGATGTTTTGAGGTCCCTGGATT 59.665 43.478 0.00 0.00 0.00 3.01
4032 4618 1.067142 CGCACCCGCTATACATATGGT 60.067 52.381 7.80 0.00 35.30 3.55
4035 4621 3.887621 ATTCGCACCCGCTATACATAT 57.112 42.857 0.00 0.00 35.30 1.78
4036 4622 3.671008 AATTCGCACCCGCTATACATA 57.329 42.857 0.00 0.00 35.30 2.29
4039 4625 3.846360 AGATAATTCGCACCCGCTATAC 58.154 45.455 0.00 0.00 35.30 1.47
4045 4631 3.093717 ACAGTAGATAATTCGCACCCG 57.906 47.619 0.00 0.00 0.00 5.28
4048 4634 5.435557 GCATGAACAGTAGATAATTCGCAC 58.564 41.667 0.00 0.00 0.00 5.34
4052 4638 5.376625 TGGGGCATGAACAGTAGATAATTC 58.623 41.667 0.00 0.00 0.00 2.17
4086 4672 3.603144 GCAGAGGCCTATAGCACTG 57.397 57.895 4.42 9.12 46.50 3.66
4120 4706 5.132502 TGCTGGAGAAATTCAAGACAAGAA 58.867 37.500 0.00 0.00 0.00 2.52
4125 4711 4.456911 TGTCATGCTGGAGAAATTCAAGAC 59.543 41.667 0.00 0.00 0.00 3.01
4143 4730 0.173481 CGATCTCACGGGTGTGTCAT 59.827 55.000 0.00 0.00 46.49 3.06
4216 4803 3.785189 GATGACGGCGCCCACGTAT 62.785 63.158 23.46 8.49 45.68 3.06
4348 4937 0.892358 TAACCTGCACTCCGACGACT 60.892 55.000 0.00 0.00 0.00 4.18
4430 5020 1.298859 CCGGCTGAAACCTGCTGTAC 61.299 60.000 0.00 0.00 34.33 2.90
4468 5058 0.543277 ATGCAGGCCTGATTTCGAGA 59.457 50.000 37.21 8.63 0.00 4.04
4470 5060 0.035152 ACATGCAGGCCTGATTTCGA 60.035 50.000 37.21 11.88 0.00 3.71
4514 5107 2.129555 ATCACCACCTCCCTGCACAC 62.130 60.000 0.00 0.00 0.00 3.82
4515 5108 1.841302 GATCACCACCTCCCTGCACA 61.841 60.000 0.00 0.00 0.00 4.57
4642 5235 0.109342 CCACTTCCTTGACAGGCTGT 59.891 55.000 22.26 22.26 40.58 4.40
4679 5273 2.803133 GCTACTGCTCTGTTGTGTCACA 60.803 50.000 0.18 0.18 36.03 3.58
4684 5278 0.038251 TCCGCTACTGCTCTGTTGTG 60.038 55.000 0.00 0.00 36.97 3.33
4696 5291 0.671251 ACTATGCTCTGCTCCGCTAC 59.329 55.000 0.00 0.00 0.00 3.58
4697 5292 1.880675 GTACTATGCTCTGCTCCGCTA 59.119 52.381 0.00 0.00 0.00 4.26
4757 5376 7.553334 TCTAACTAATTTCTCCAGCAACGTAT 58.447 34.615 0.00 0.00 0.00 3.06
4777 5396 7.769507 CCCTCCCAAGTACTAATTCTTTCTAAC 59.230 40.741 0.00 0.00 0.00 2.34
4782 5401 5.105853 TCCCCTCCCAAGTACTAATTCTTT 58.894 41.667 0.00 0.00 0.00 2.52
4838 5458 5.673318 GCAACATTGACCAAAACCAAAACTG 60.673 40.000 0.00 0.00 0.00 3.16
4874 5494 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
4918 6167 8.414778 CCCAACTTTGTACCAATTTTGTACTAA 58.585 33.333 13.44 11.52 0.00 2.24
4921 6170 6.575267 ACCCAACTTTGTACCAATTTTGTAC 58.425 36.000 7.72 7.72 0.00 2.90
4923 6172 5.187967 TGACCCAACTTTGTACCAATTTTGT 59.812 36.000 0.00 0.00 0.00 2.83
4924 6173 5.665459 TGACCCAACTTTGTACCAATTTTG 58.335 37.500 0.00 0.00 0.00 2.44
4925 6174 5.941555 TGACCCAACTTTGTACCAATTTT 57.058 34.783 0.00 0.00 0.00 1.82
4929 6178 7.604657 AATAAATGACCCAACTTTGTACCAA 57.395 32.000 0.00 0.00 0.00 3.67
4930 6179 7.604657 AAATAAATGACCCAACTTTGTACCA 57.395 32.000 0.00 0.00 0.00 3.25
4931 6180 7.386573 CCAAAATAAATGACCCAACTTTGTACC 59.613 37.037 0.00 0.00 0.00 3.34
4932 6181 8.145122 TCCAAAATAAATGACCCAACTTTGTAC 58.855 33.333 0.00 0.00 0.00 2.90
4933 6182 8.251383 TCCAAAATAAATGACCCAACTTTGTA 57.749 30.769 0.00 0.00 0.00 2.41
4934 6183 7.130681 TCCAAAATAAATGACCCAACTTTGT 57.869 32.000 0.00 0.00 0.00 2.83
4936 6185 6.704050 CGTTCCAAAATAAATGACCCAACTTT 59.296 34.615 0.00 0.00 0.00 2.66
4937 6186 6.220201 CGTTCCAAAATAAATGACCCAACTT 58.780 36.000 0.00 0.00 0.00 2.66
4939 6188 4.926832 CCGTTCCAAAATAAATGACCCAAC 59.073 41.667 0.00 0.00 0.00 3.77
4940 6189 4.833380 TCCGTTCCAAAATAAATGACCCAA 59.167 37.500 0.00 0.00 0.00 4.12
4942 6191 4.142249 CCTCCGTTCCAAAATAAATGACCC 60.142 45.833 0.00 0.00 0.00 4.46
4944 6971 4.703093 TCCCTCCGTTCCAAAATAAATGAC 59.297 41.667 0.00 0.00 0.00 3.06
4947 6974 4.930696 AGTCCCTCCGTTCCAAAATAAAT 58.069 39.130 0.00 0.00 0.00 1.40
4949 6976 4.533311 AGTAGTCCCTCCGTTCCAAAATAA 59.467 41.667 0.00 0.00 0.00 1.40
4954 6981 2.042162 ACTAGTAGTCCCTCCGTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
4955 6982 1.637553 ACTAGTAGTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
4956 6983 2.022934 CACTAGTAGTCCCTCCGTTCC 58.977 57.143 0.00 0.00 0.00 3.62
4957 6984 2.720915 ACACTAGTAGTCCCTCCGTTC 58.279 52.381 0.00 0.00 0.00 3.95
4958 6985 2.895242 ACACTAGTAGTCCCTCCGTT 57.105 50.000 0.00 0.00 0.00 4.44
4961 6988 5.183522 GCATACATACACTAGTAGTCCCTCC 59.816 48.000 0.00 0.00 32.86 4.30
4966 6993 7.273320 TCCTTGCATACATACACTAGTAGTC 57.727 40.000 0.00 0.00 32.86 2.59
4968 6995 7.039714 TCCATCCTTGCATACATACACTAGTAG 60.040 40.741 0.00 0.00 32.86 2.57
4984 7011 3.493334 TGAATCATCCATCCATCCTTGC 58.507 45.455 0.00 0.00 0.00 4.01
4986 7013 5.960704 TCATTGAATCATCCATCCATCCTT 58.039 37.500 0.00 0.00 0.00 3.36
4987 7014 5.312443 TCTCATTGAATCATCCATCCATCCT 59.688 40.000 0.00 0.00 0.00 3.24
4989 7016 5.648526 CCTCTCATTGAATCATCCATCCATC 59.351 44.000 0.00 0.00 0.00 3.51
4990 7017 5.312443 TCCTCTCATTGAATCATCCATCCAT 59.688 40.000 0.00 0.00 0.00 3.41
4992 7019 5.238624 TCCTCTCATTGAATCATCCATCC 57.761 43.478 0.00 0.00 0.00 3.51
4994 7021 5.312443 TCCATCCTCTCATTGAATCATCCAT 59.688 40.000 0.00 0.00 0.00 3.41
4995 7022 4.661709 TCCATCCTCTCATTGAATCATCCA 59.338 41.667 0.00 0.00 0.00 3.41
4996 7023 5.238624 TCCATCCTCTCATTGAATCATCC 57.761 43.478 0.00 0.00 0.00 3.51
4997 7024 5.648526 CCATCCATCCTCTCATTGAATCATC 59.351 44.000 0.00 0.00 0.00 2.92
4998 7025 5.312443 TCCATCCATCCTCTCATTGAATCAT 59.688 40.000 0.00 0.00 0.00 2.45
5001 7028 4.504514 CGTCCATCCATCCTCTCATTGAAT 60.505 45.833 0.00 0.00 0.00 2.57
5006 7033 2.388526 TCGTCCATCCATCCTCTCAT 57.611 50.000 0.00 0.00 0.00 2.90
5045 7076 0.547712 TCCTCTCCTCTTGGGTTGGG 60.548 60.000 0.00 0.00 36.25 4.12
5086 7117 5.986135 TGTGTGCAAGTAAAAACAACTTTGT 59.014 32.000 0.00 0.00 44.72 2.83
5124 7286 5.358090 CACAGTGCAAGTATGATCTGATCT 58.642 41.667 17.82 6.96 34.86 2.75
5140 7302 2.900106 AAGGAGGGGAGCACAGTGC 61.900 63.158 18.55 18.55 45.46 4.40
5141 7303 1.002868 CAAGGAGGGGAGCACAGTG 60.003 63.158 0.00 0.00 0.00 3.66
5142 7304 2.900106 GCAAGGAGGGGAGCACAGT 61.900 63.158 0.00 0.00 0.00 3.55
5143 7305 2.045536 GCAAGGAGGGGAGCACAG 60.046 66.667 0.00 0.00 0.00 3.66
5144 7306 2.129555 GAAGCAAGGAGGGGAGCACA 62.130 60.000 0.00 0.00 0.00 4.57
5145 7307 1.377856 GAAGCAAGGAGGGGAGCAC 60.378 63.158 0.00 0.00 0.00 4.40
5146 7308 2.606587 GGAAGCAAGGAGGGGAGCA 61.607 63.158 0.00 0.00 0.00 4.26
5147 7309 2.273776 GGAAGCAAGGAGGGGAGC 59.726 66.667 0.00 0.00 0.00 4.70
5148 7310 1.210885 AAGGGAAGCAAGGAGGGGAG 61.211 60.000 0.00 0.00 0.00 4.30
5149 7311 1.151587 AAGGGAAGCAAGGAGGGGA 60.152 57.895 0.00 0.00 0.00 4.81
5150 7312 1.210885 AGAAGGGAAGCAAGGAGGGG 61.211 60.000 0.00 0.00 0.00 4.79
5151 7313 0.254462 GAGAAGGGAAGCAAGGAGGG 59.746 60.000 0.00 0.00 0.00 4.30
5152 7314 0.107945 CGAGAAGGGAAGCAAGGAGG 60.108 60.000 0.00 0.00 0.00 4.30
5153 7315 0.742635 GCGAGAAGGGAAGCAAGGAG 60.743 60.000 0.00 0.00 0.00 3.69
5158 7320 1.194781 AGAAGGCGAGAAGGGAAGCA 61.195 55.000 0.00 0.00 0.00 3.91
5172 7334 4.033709 TCTCTATGGAAGTGGGAAGAAGG 58.966 47.826 0.00 0.00 0.00 3.46
5178 7340 1.344087 GGGGTCTCTATGGAAGTGGGA 60.344 57.143 0.00 0.00 0.00 4.37
5220 7402 3.716195 TCCACCATCAGCACGGGG 61.716 66.667 0.00 0.00 0.00 5.73
5224 7406 1.679311 TGGAGTCCACCATCAGCAC 59.321 57.895 8.12 0.00 34.77 4.40
5225 7407 4.231140 TGGAGTCCACCATCAGCA 57.769 55.556 8.12 0.00 34.77 4.41
5243 7425 0.042013 GTCGTCGTCGCTAGAGATGG 60.042 60.000 14.75 3.87 36.96 3.51
5245 7427 2.126467 GTAGTCGTCGTCGCTAGAGAT 58.874 52.381 0.00 0.00 36.96 2.75
5246 7428 1.133982 AGTAGTCGTCGTCGCTAGAGA 59.866 52.381 0.00 0.00 36.96 3.10
5247 7429 1.558741 AGTAGTCGTCGTCGCTAGAG 58.441 55.000 0.00 0.00 36.96 2.43
5248 7430 2.098280 AGTAGTAGTCGTCGTCGCTAGA 59.902 50.000 0.00 0.00 36.96 2.43
5249 7431 2.458951 AGTAGTAGTCGTCGTCGCTAG 58.541 52.381 0.00 0.00 36.96 3.42
5250 7432 2.568696 AGTAGTAGTCGTCGTCGCTA 57.431 50.000 0.00 0.00 36.96 4.26
5251 7433 2.189342 GTAGTAGTAGTCGTCGTCGCT 58.811 52.381 0.00 0.97 36.96 4.93
5252 7434 1.256635 GGTAGTAGTAGTCGTCGTCGC 59.743 57.143 0.00 0.00 36.96 5.19
5257 7439 3.876320 CCTTGGAGGTAGTAGTAGTCGTC 59.124 52.174 0.00 0.00 0.00 4.20
5258 7440 3.883669 CCTTGGAGGTAGTAGTAGTCGT 58.116 50.000 0.00 0.00 0.00 4.34
5279 7461 2.105993 GGGATGTGGGAGGGTACAATAC 59.894 54.545 0.00 0.00 0.00 1.89
5280 7462 2.414612 GGGATGTGGGAGGGTACAATA 58.585 52.381 0.00 0.00 0.00 1.90
5281 7463 1.222567 GGGATGTGGGAGGGTACAAT 58.777 55.000 0.00 0.00 0.00 2.71
5282 7464 0.917333 GGGGATGTGGGAGGGTACAA 60.917 60.000 0.00 0.00 0.00 2.41
5283 7465 1.307517 GGGGATGTGGGAGGGTACA 60.308 63.158 0.00 0.00 0.00 2.90
5284 7466 2.076803 GGGGGATGTGGGAGGGTAC 61.077 68.421 0.00 0.00 0.00 3.34
5285 7467 2.375173 GGGGGATGTGGGAGGGTA 59.625 66.667 0.00 0.00 0.00 3.69
5307 10335 0.745486 CAAGCATGCCGATGAGGTCA 60.745 55.000 15.66 0.00 43.70 4.02
5322 10350 6.035975 ACACATTAAAGCTGAAACAAACAAGC 59.964 34.615 0.00 0.00 0.00 4.01
5334 10370 5.445142 CGAGCTCACTAACACATTAAAGCTG 60.445 44.000 15.40 0.00 38.86 4.24
5358 10394 0.452784 GCCTCGTGAACATTTGCGTC 60.453 55.000 0.00 0.00 0.00 5.19
5379 10415 0.111446 TCGGGAAGATTTTGTGGCCA 59.889 50.000 0.00 0.00 0.00 5.36
5383 10419 1.064060 GCGGATCGGGAAGATTTTGTG 59.936 52.381 2.13 0.00 40.26 3.33
5385 10421 0.663153 GGCGGATCGGGAAGATTTTG 59.337 55.000 2.13 0.00 40.26 2.44
5398 10434 2.978298 TAGCAGAGTAGGCGGCGGAT 62.978 60.000 9.78 0.00 36.08 4.18
5421 10457 0.813821 ACCGGCGACTTACCTACTTC 59.186 55.000 9.30 0.00 0.00 3.01
5422 10458 0.529378 CACCGGCGACTTACCTACTT 59.471 55.000 9.30 0.00 0.00 2.24
5423 10459 0.610232 ACACCGGCGACTTACCTACT 60.610 55.000 9.30 0.00 0.00 2.57
5424 10460 0.179153 GACACCGGCGACTTACCTAC 60.179 60.000 9.30 0.00 0.00 3.18
5425 10461 0.608856 TGACACCGGCGACTTACCTA 60.609 55.000 9.30 0.00 0.00 3.08
5427 10463 1.445582 CTGACACCGGCGACTTACC 60.446 63.158 9.30 0.00 0.00 2.85
5431 10467 2.029073 CAACTGACACCGGCGACT 59.971 61.111 9.30 0.00 0.00 4.18
5445 10481 6.047231 AGCCTAATTTCGGTACTATGTCAAC 58.953 40.000 0.00 0.00 0.00 3.18
5451 10487 6.935208 GGAATTGAGCCTAATTTCGGTACTAT 59.065 38.462 0.00 0.00 30.78 2.12
5452 10488 6.126997 TGGAATTGAGCCTAATTTCGGTACTA 60.127 38.462 0.00 0.00 29.74 1.82
5484 10520 0.954452 CACTTGTCACCCTTCAAGGC 59.046 55.000 0.00 0.00 43.40 4.35
5485 10521 1.133792 ACCACTTGTCACCCTTCAAGG 60.134 52.381 0.00 0.00 43.40 3.61
5538 10575 9.811995 TTGTACTATAGCAACCTAATGTACTTG 57.188 33.333 0.00 0.00 37.29 3.16
5550 10587 6.579865 ACATGTAGGGTTGTACTATAGCAAC 58.420 40.000 12.38 12.38 42.86 4.17
5551 10588 6.381707 TGACATGTAGGGTTGTACTATAGCAA 59.618 38.462 0.00 0.00 0.00 3.91
5552 10589 5.894964 TGACATGTAGGGTTGTACTATAGCA 59.105 40.000 0.00 0.00 0.00 3.49
5553 10590 6.040616 AGTGACATGTAGGGTTGTACTATAGC 59.959 42.308 0.00 0.00 0.00 2.97
5554 10591 7.584122 AGTGACATGTAGGGTTGTACTATAG 57.416 40.000 0.00 0.00 0.00 1.31
5555 10592 9.074576 CATAGTGACATGTAGGGTTGTACTATA 57.925 37.037 0.00 0.00 30.44 1.31
5556 10593 7.563924 ACATAGTGACATGTAGGGTTGTACTAT 59.436 37.037 0.00 1.33 37.37 2.12
5557 10594 6.893554 ACATAGTGACATGTAGGGTTGTACTA 59.106 38.462 0.00 0.00 37.37 1.82
5558 10595 5.720041 ACATAGTGACATGTAGGGTTGTACT 59.280 40.000 0.00 0.00 37.37 2.73
5559 10596 5.974108 ACATAGTGACATGTAGGGTTGTAC 58.026 41.667 0.00 0.00 37.37 2.90
5560 10597 6.014070 ACAACATAGTGACATGTAGGGTTGTA 60.014 38.462 20.05 1.50 42.92 2.41
5561 10598 5.221843 ACAACATAGTGACATGTAGGGTTGT 60.222 40.000 17.69 17.69 40.79 3.32
5562 10599 5.245531 ACAACATAGTGACATGTAGGGTTG 58.754 41.667 16.82 16.82 38.19 3.77
5563 10600 5.499004 ACAACATAGTGACATGTAGGGTT 57.501 39.130 0.00 0.00 38.19 4.11
5564 10601 5.499004 AACAACATAGTGACATGTAGGGT 57.501 39.130 0.00 0.00 38.19 4.34
5565 10602 6.429692 TCAAAACAACATAGTGACATGTAGGG 59.570 38.462 0.00 0.00 38.19 3.53
5566 10603 7.361201 CCTCAAAACAACATAGTGACATGTAGG 60.361 40.741 0.00 0.00 38.19 3.18
5567 10604 7.173218 ACCTCAAAACAACATAGTGACATGTAG 59.827 37.037 0.00 0.00 38.19 2.74
5568 10605 6.995686 ACCTCAAAACAACATAGTGACATGTA 59.004 34.615 0.00 0.00 38.19 2.29
5569 10606 5.827797 ACCTCAAAACAACATAGTGACATGT 59.172 36.000 0.00 0.00 40.90 3.21
5570 10607 6.317789 ACCTCAAAACAACATAGTGACATG 57.682 37.500 0.00 0.00 0.00 3.21
5571 10608 6.959639 AACCTCAAAACAACATAGTGACAT 57.040 33.333 0.00 0.00 0.00 3.06
5572 10609 6.767524 AAACCTCAAAACAACATAGTGACA 57.232 33.333 0.00 0.00 0.00 3.58
5573 10610 7.480810 AGAAAACCTCAAAACAACATAGTGAC 58.519 34.615 0.00 0.00 0.00 3.67
5574 10611 7.639113 AGAAAACCTCAAAACAACATAGTGA 57.361 32.000 0.00 0.00 0.00 3.41
5575 10612 8.190784 AGAAGAAAACCTCAAAACAACATAGTG 58.809 33.333 0.00 0.00 0.00 2.74
5576 10613 8.293699 AGAAGAAAACCTCAAAACAACATAGT 57.706 30.769 0.00 0.00 0.00 2.12
5577 10614 9.237846 GAAGAAGAAAACCTCAAAACAACATAG 57.762 33.333 0.00 0.00 0.00 2.23
5578 10615 8.966868 AGAAGAAGAAAACCTCAAAACAACATA 58.033 29.630 0.00 0.00 0.00 2.29
5579 10616 7.761249 CAGAAGAAGAAAACCTCAAAACAACAT 59.239 33.333 0.00 0.00 0.00 2.71
5580 10617 7.040062 TCAGAAGAAGAAAACCTCAAAACAACA 60.040 33.333 0.00 0.00 0.00 3.33
5581 10618 7.312899 TCAGAAGAAGAAAACCTCAAAACAAC 58.687 34.615 0.00 0.00 0.00 3.32
5582 10619 7.461182 TCAGAAGAAGAAAACCTCAAAACAA 57.539 32.000 0.00 0.00 0.00 2.83
5583 10620 7.461182 TTCAGAAGAAGAAAACCTCAAAACA 57.539 32.000 0.00 0.00 0.00 2.83
5584 10621 8.757164 TTTTCAGAAGAAGAAAACCTCAAAAC 57.243 30.769 0.00 0.00 39.34 2.43
5585 10622 9.586435 GATTTTCAGAAGAAGAAAACCTCAAAA 57.414 29.630 3.53 0.00 44.78 2.44
5586 10623 8.197439 GGATTTTCAGAAGAAGAAAACCTCAAA 58.803 33.333 3.53 0.00 44.78 2.69
5587 10624 7.468631 CGGATTTTCAGAAGAAGAAAACCTCAA 60.469 37.037 3.53 0.00 44.78 3.02
5588 10625 6.017109 CGGATTTTCAGAAGAAGAAAACCTCA 60.017 38.462 3.53 0.00 44.78 3.86
5589 10626 6.374578 CGGATTTTCAGAAGAAGAAAACCTC 58.625 40.000 3.53 0.00 44.78 3.85
5590 10627 5.278512 GCGGATTTTCAGAAGAAGAAAACCT 60.279 40.000 3.53 0.00 44.78 3.50
5591 10628 4.917998 GCGGATTTTCAGAAGAAGAAAACC 59.082 41.667 3.53 6.60 44.78 3.27
5592 10629 5.519722 TGCGGATTTTCAGAAGAAGAAAAC 58.480 37.500 3.53 0.00 44.78 2.43
5593 10630 5.766150 TGCGGATTTTCAGAAGAAGAAAA 57.234 34.783 3.89 3.89 45.68 2.29
5594 10631 5.766150 TTGCGGATTTTCAGAAGAAGAAA 57.234 34.783 0.00 0.00 34.71 2.52
5595 10632 5.766150 TTTGCGGATTTTCAGAAGAAGAA 57.234 34.783 0.00 0.00 34.71 2.52
5596 10633 5.964958 ATTTGCGGATTTTCAGAAGAAGA 57.035 34.783 0.00 0.00 34.71 2.87
5597 10634 6.642131 TCAAATTTGCGGATTTTCAGAAGAAG 59.358 34.615 13.54 0.00 34.71 2.85
5598 10635 6.511416 TCAAATTTGCGGATTTTCAGAAGAA 58.489 32.000 13.54 0.00 0.00 2.52
5599 10636 6.083098 TCAAATTTGCGGATTTTCAGAAGA 57.917 33.333 13.54 0.00 0.00 2.87
5600 10637 6.768029 TTCAAATTTGCGGATTTTCAGAAG 57.232 33.333 13.54 0.00 0.00 2.85
5601 10638 7.065085 TGTTTTCAAATTTGCGGATTTTCAGAA 59.935 29.630 13.54 0.00 0.00 3.02
5602 10639 6.536582 TGTTTTCAAATTTGCGGATTTTCAGA 59.463 30.769 13.54 0.00 0.00 3.27
5603 10640 6.713520 TGTTTTCAAATTTGCGGATTTTCAG 58.286 32.000 13.54 0.00 0.00 3.02
5604 10641 6.668541 TGTTTTCAAATTTGCGGATTTTCA 57.331 29.167 13.54 2.38 0.00 2.69
5605 10642 8.069574 AGAATGTTTTCAAATTTGCGGATTTTC 58.930 29.630 13.54 11.47 34.08 2.29
5606 10643 7.929159 AGAATGTTTTCAAATTTGCGGATTTT 58.071 26.923 13.54 3.54 34.08 1.82
5607 10644 7.495135 AGAATGTTTTCAAATTTGCGGATTT 57.505 28.000 13.54 3.06 34.08 2.17
5608 10645 7.354257 CAAGAATGTTTTCAAATTTGCGGATT 58.646 30.769 13.54 6.83 34.08 3.01
5609 10646 6.073112 CCAAGAATGTTTTCAAATTTGCGGAT 60.073 34.615 13.54 0.00 34.08 4.18
5610 10647 5.236047 CCAAGAATGTTTTCAAATTTGCGGA 59.764 36.000 13.54 0.00 34.08 5.54
5611 10648 5.442402 CCAAGAATGTTTTCAAATTTGCGG 58.558 37.500 13.54 0.00 34.08 5.69
5612 10649 5.442402 CCCAAGAATGTTTTCAAATTTGCG 58.558 37.500 13.54 0.00 34.08 4.85
5613 10650 5.008911 AGCCCAAGAATGTTTTCAAATTTGC 59.991 36.000 13.54 0.04 34.08 3.68
5614 10651 6.622833 AGCCCAAGAATGTTTTCAAATTTG 57.377 33.333 12.15 12.15 34.08 2.32
5615 10652 7.643569 AAAGCCCAAGAATGTTTTCAAATTT 57.356 28.000 0.00 0.00 34.08 1.82
5616 10653 7.772757 TGTAAAGCCCAAGAATGTTTTCAAATT 59.227 29.630 0.00 0.00 34.08 1.82
5617 10654 7.226523 GTGTAAAGCCCAAGAATGTTTTCAAAT 59.773 33.333 0.00 0.00 34.08 2.32
5618 10655 6.536941 GTGTAAAGCCCAAGAATGTTTTCAAA 59.463 34.615 0.00 0.00 34.08 2.69
5619 10656 6.045955 GTGTAAAGCCCAAGAATGTTTTCAA 58.954 36.000 0.00 0.00 34.08 2.69
5620 10657 5.362430 AGTGTAAAGCCCAAGAATGTTTTCA 59.638 36.000 0.00 0.00 34.08 2.69
5621 10658 5.842907 AGTGTAAAGCCCAAGAATGTTTTC 58.157 37.500 0.00 0.00 0.00 2.29
5622 10659 5.598417 AGAGTGTAAAGCCCAAGAATGTTTT 59.402 36.000 0.00 0.00 0.00 2.43
5623 10660 5.140454 AGAGTGTAAAGCCCAAGAATGTTT 58.860 37.500 0.00 0.00 0.00 2.83
5624 10661 4.729868 AGAGTGTAAAGCCCAAGAATGTT 58.270 39.130 0.00 0.00 0.00 2.71
5625 10662 4.373156 AGAGTGTAAAGCCCAAGAATGT 57.627 40.909 0.00 0.00 0.00 2.71
5626 10663 4.142816 CGAAGAGTGTAAAGCCCAAGAATG 60.143 45.833 0.00 0.00 0.00 2.67
5627 10664 4.003648 CGAAGAGTGTAAAGCCCAAGAAT 58.996 43.478 0.00 0.00 0.00 2.40
5628 10665 3.181458 ACGAAGAGTGTAAAGCCCAAGAA 60.181 43.478 0.00 0.00 0.00 2.52
5629 10666 2.367567 ACGAAGAGTGTAAAGCCCAAGA 59.632 45.455 0.00 0.00 0.00 3.02
5630 10667 2.480419 CACGAAGAGTGTAAAGCCCAAG 59.520 50.000 0.00 0.00 45.51 3.61
5631 10668 2.489971 CACGAAGAGTGTAAAGCCCAA 58.510 47.619 0.00 0.00 45.51 4.12
5632 10669 2.163818 CACGAAGAGTGTAAAGCCCA 57.836 50.000 0.00 0.00 45.51 5.36
5642 10679 2.166664 GAGAATGTAGCCCACGAAGAGT 59.833 50.000 0.00 0.00 0.00 3.24
5643 10680 2.482142 GGAGAATGTAGCCCACGAAGAG 60.482 54.545 0.00 0.00 0.00 2.85
5644 10681 1.480954 GGAGAATGTAGCCCACGAAGA 59.519 52.381 0.00 0.00 0.00 2.87
5645 10682 1.207089 TGGAGAATGTAGCCCACGAAG 59.793 52.381 0.00 0.00 0.00 3.79
5646 10683 1.207089 CTGGAGAATGTAGCCCACGAA 59.793 52.381 0.00 0.00 0.00 3.85
5647 10684 0.824109 CTGGAGAATGTAGCCCACGA 59.176 55.000 0.00 0.00 0.00 4.35
5648 10685 3.369381 CTGGAGAATGTAGCCCACG 57.631 57.895 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.