Multiple sequence alignment - TraesCS6B01G074000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G074000 chr6B 100.000 2312 0 0 1 2312 50458509 50460820 0.000000e+00 4270.0
1 TraesCS6B01G074000 chr6B 93.228 443 23 4 757 1196 48689218 48688780 0.000000e+00 645.0
2 TraesCS6B01G074000 chr6B 86.596 567 53 16 761 1315 58057904 58057349 2.540000e-169 604.0
3 TraesCS6B01G074000 chr6B 86.521 549 34 22 781 1310 59588522 59587995 3.330000e-158 568.0
4 TraesCS6B01G074000 chr6B 98.095 315 6 0 1001 1315 54662947 54662633 1.210000e-152 549.0
5 TraesCS6B01G074000 chr6A 87.575 998 80 28 742 1718 45347521 45346547 0.000000e+00 1116.0
6 TraesCS6B01G074000 chr6A 92.941 85 6 0 1506 1590 30869502 30869418 8.670000e-25 124.0
7 TraesCS6B01G074000 chrUn 86.350 1033 71 38 742 1718 137920060 137921078 0.000000e+00 1062.0
8 TraesCS6B01G074000 chrUn 80.343 641 83 24 22 649 137919398 137920008 1.630000e-121 446.0
9 TraesCS6B01G074000 chrUn 83.820 377 42 11 1947 2312 137921147 137921515 7.910000e-90 340.0
10 TraesCS6B01G074000 chrUn 90.977 133 10 1 1728 1860 343522018 343522148 6.560000e-41 178.0
11 TraesCS6B01G074000 chrUn 90.977 133 10 1 1728 1860 343541634 343541764 6.560000e-41 178.0
12 TraesCS6B01G074000 chrUn 90.977 133 10 1 1728 1860 343547811 343547681 6.560000e-41 178.0
13 TraesCS6B01G074000 chrUn 90.977 133 10 1 1728 1860 364166007 364166137 6.560000e-41 178.0
14 TraesCS6B01G074000 chrUn 100.000 28 0 0 1 28 106320188 106320215 4.000000e-03 52.8
15 TraesCS6B01G074000 chr2D 85.569 887 75 29 905 1747 248490229 248489352 0.000000e+00 880.0
16 TraesCS6B01G074000 chr6D 85.860 587 58 18 742 1315 29756745 29757319 3.290000e-168 601.0
17 TraesCS6B01G074000 chr6D 86.570 484 36 11 1093 1550 15260882 15260402 7.370000e-140 507.0
18 TraesCS6B01G074000 chr2B 84.469 631 57 25 742 1358 690677445 690676842 3.310000e-163 584.0
19 TraesCS6B01G074000 chr1D 77.640 161 30 6 141 297 415321310 415321152 2.450000e-15 93.5
20 TraesCS6B01G074000 chr3D 82.979 94 12 3 206 295 572632327 572632234 5.290000e-12 82.4
21 TraesCS6B01G074000 chr5A 96.970 33 1 0 1 33 295126007 295125975 3.210000e-04 56.5
22 TraesCS6B01G074000 chr7D 100.000 29 0 0 1 29 575291613 575291641 1.000000e-03 54.7
23 TraesCS6B01G074000 chr7B 100.000 29 0 0 1 29 255281912 255281884 1.000000e-03 54.7
24 TraesCS6B01G074000 chr4D 100.000 29 0 0 1 29 443016247 443016219 1.000000e-03 54.7
25 TraesCS6B01G074000 chr4A 100.000 29 0 0 1 29 550797397 550797369 1.000000e-03 54.7
26 TraesCS6B01G074000 chr4A 96.875 32 1 0 1 32 622696556 622696525 1.000000e-03 54.7
27 TraesCS6B01G074000 chr1B 100.000 29 0 0 1 29 225674870 225674898 1.000000e-03 54.7
28 TraesCS6B01G074000 chr2A 96.774 31 1 0 1 31 480952986 480952956 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G074000 chr6B 50458509 50460820 2311 False 4270 4270 100.000000 1 2312 1 chr6B.!!$F1 2311
1 TraesCS6B01G074000 chr6B 58057349 58057904 555 True 604 604 86.596000 761 1315 1 chr6B.!!$R3 554
2 TraesCS6B01G074000 chr6B 59587995 59588522 527 True 568 568 86.521000 781 1310 1 chr6B.!!$R4 529
3 TraesCS6B01G074000 chr6A 45346547 45347521 974 True 1116 1116 87.575000 742 1718 1 chr6A.!!$R2 976
4 TraesCS6B01G074000 chrUn 137919398 137921515 2117 False 616 1062 83.504333 22 2312 3 chrUn.!!$F5 2290
5 TraesCS6B01G074000 chr2D 248489352 248490229 877 True 880 880 85.569000 905 1747 1 chr2D.!!$R1 842
6 TraesCS6B01G074000 chr6D 29756745 29757319 574 False 601 601 85.860000 742 1315 1 chr6D.!!$F1 573
7 TraesCS6B01G074000 chr2B 690676842 690677445 603 True 584 584 84.469000 742 1358 1 chr2B.!!$R1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.175073 AATCGGGTTAGCGAGTCCAC 59.825 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 2094 0.394352 ATGAACGGGTGCTGGAATCC 60.394 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.561643 TCGTCTTGGAGCAGGATTCT 58.438 50.000 0.00 0.00 0.00 2.40
47 48 1.205655 TCGTCTTGGAGCAGGATTCTG 59.794 52.381 0.00 0.00 43.64 3.02
49 50 2.354103 CGTCTTGGAGCAGGATTCTGAA 60.354 50.000 4.75 0.00 43.49 3.02
51 52 3.626670 GTCTTGGAGCAGGATTCTGAATG 59.373 47.826 4.75 0.00 43.49 2.67
64 65 0.537188 CTGAATGTGGGGACTAGCGT 59.463 55.000 0.00 0.00 0.00 5.07
65 66 0.981183 TGAATGTGGGGACTAGCGTT 59.019 50.000 0.00 0.00 0.00 4.84
76 77 0.396811 ACTAGCGTTTTGGAGGTGCT 59.603 50.000 0.00 0.00 39.59 4.40
77 78 1.079503 CTAGCGTTTTGGAGGTGCTC 58.920 55.000 0.00 0.00 37.12 4.26
82 83 1.532868 CGTTTTGGAGGTGCTCTTCTG 59.467 52.381 0.00 0.00 0.00 3.02
83 84 2.576615 GTTTTGGAGGTGCTCTTCTGT 58.423 47.619 0.00 0.00 0.00 3.41
84 85 2.550180 GTTTTGGAGGTGCTCTTCTGTC 59.450 50.000 0.00 0.00 0.00 3.51
86 87 1.216710 GGAGGTGCTCTTCTGTCGG 59.783 63.158 0.00 0.00 0.00 4.79
93 94 1.734477 CTCTTCTGTCGGGTGTGCG 60.734 63.158 0.00 0.00 0.00 5.34
98 99 1.739929 CTGTCGGGTGTGCGCATTA 60.740 57.895 15.91 2.58 0.00 1.90
104 105 1.737696 CGGGTGTGCGCATTAGTCTTA 60.738 52.381 15.91 0.00 0.00 2.10
111 112 5.678483 GTGTGCGCATTAGTCTTATTGATTG 59.322 40.000 15.91 0.00 0.00 2.67
113 114 4.222114 GCGCATTAGTCTTATTGATTGGC 58.778 43.478 0.30 0.00 0.00 4.52
114 115 4.787598 CGCATTAGTCTTATTGATTGGCC 58.212 43.478 0.00 0.00 0.00 5.36
115 116 4.275689 CGCATTAGTCTTATTGATTGGCCA 59.724 41.667 0.00 0.00 0.00 5.36
116 117 5.561532 CGCATTAGTCTTATTGATTGGCCAG 60.562 44.000 5.11 0.00 0.00 4.85
117 118 5.278660 GCATTAGTCTTATTGATTGGCCAGG 60.279 44.000 5.11 0.00 0.00 4.45
118 119 5.450818 TTAGTCTTATTGATTGGCCAGGT 57.549 39.130 5.11 0.00 0.00 4.00
120 121 4.677182 AGTCTTATTGATTGGCCAGGTTT 58.323 39.130 5.11 0.00 0.00 3.27
122 123 4.220602 GTCTTATTGATTGGCCAGGTTTGT 59.779 41.667 5.11 0.00 0.00 2.83
123 124 4.220382 TCTTATTGATTGGCCAGGTTTGTG 59.780 41.667 5.11 0.00 0.00 3.33
124 125 2.079170 TTGATTGGCCAGGTTTGTGA 57.921 45.000 5.11 0.00 0.00 3.58
125 126 2.079170 TGATTGGCCAGGTTTGTGAA 57.921 45.000 5.11 0.00 0.00 3.18
126 127 2.607499 TGATTGGCCAGGTTTGTGAAT 58.393 42.857 5.11 0.00 0.00 2.57
130 131 0.244721 GGCCAGGTTTGTGAATGAGC 59.755 55.000 0.00 0.00 0.00 4.26
166 167 0.899720 AAATCGGGTTAGCGAGTCCA 59.100 50.000 0.00 0.00 0.00 4.02
167 168 0.175073 AATCGGGTTAGCGAGTCCAC 59.825 55.000 0.00 0.00 0.00 4.02
174 175 0.454600 TTAGCGAGTCCACGATCCAC 59.545 55.000 0.00 0.00 33.12 4.02
188 189 1.797472 TCCACCTTGGATCCCCTCT 59.203 57.895 9.90 0.00 42.67 3.69
192 193 1.918957 CACCTTGGATCCCCTCTTTCT 59.081 52.381 9.90 0.00 0.00 2.52
193 194 1.918957 ACCTTGGATCCCCTCTTTCTG 59.081 52.381 9.90 0.00 0.00 3.02
235 239 4.308458 TTGTCGGGTGGCGACCAG 62.308 66.667 20.36 16.07 45.25 4.00
245 249 2.649034 GCGACCAGACGACCAAGA 59.351 61.111 0.00 0.00 35.09 3.02
247 251 1.078759 GCGACCAGACGACCAAGATG 61.079 60.000 0.00 0.00 35.09 2.90
250 254 2.611518 GACCAGACGACCAAGATGAAG 58.388 52.381 0.00 0.00 0.00 3.02
252 256 1.338105 CCAGACGACCAAGATGAAGCA 60.338 52.381 0.00 0.00 0.00 3.91
269 273 2.427232 GCATCTGCTTGCTTGTTCAA 57.573 45.000 0.00 0.00 39.57 2.69
281 285 6.128902 GCTTGCTTGTTCAAATGAAGATGAAG 60.129 38.462 9.46 10.01 36.31 3.02
284 288 5.566230 GCTTGTTCAAATGAAGATGAAGGCT 60.566 40.000 9.46 0.00 36.31 4.58
291 295 3.340814 TGAAGATGAAGGCTGAAGTCC 57.659 47.619 0.00 0.00 0.00 3.85
296 300 1.270907 TGAAGGCTGAAGTCCTCCTC 58.729 55.000 0.00 0.00 32.45 3.71
298 302 1.480545 GAAGGCTGAAGTCCTCCTCTC 59.519 57.143 0.00 0.00 32.45 3.20
300 304 0.968393 GGCTGAAGTCCTCCTCTCGT 60.968 60.000 0.00 0.00 0.00 4.18
301 305 0.892063 GCTGAAGTCCTCCTCTCGTT 59.108 55.000 0.00 0.00 0.00 3.85
302 306 1.273886 GCTGAAGTCCTCCTCTCGTTT 59.726 52.381 0.00 0.00 0.00 3.60
303 307 2.928731 GCTGAAGTCCTCCTCTCGTTTG 60.929 54.545 0.00 0.00 0.00 2.93
304 308 2.297597 CTGAAGTCCTCCTCTCGTTTGT 59.702 50.000 0.00 0.00 0.00 2.83
305 309 3.493334 TGAAGTCCTCCTCTCGTTTGTA 58.507 45.455 0.00 0.00 0.00 2.41
319 323 4.613944 TCGTTTGTAGTGTCAACGAGATT 58.386 39.130 2.40 0.00 32.26 2.40
326 330 4.008074 AGTGTCAACGAGATTGGTGATT 57.992 40.909 0.00 0.00 38.98 2.57
356 360 3.855524 GCGACTCTTTGCCTATAGCTCTC 60.856 52.174 0.00 0.00 44.23 3.20
371 375 8.610896 CCTATAGCTCTCATGTCTTTTTCTTTG 58.389 37.037 0.00 0.00 0.00 2.77
373 377 6.311055 AGCTCTCATGTCTTTTTCTTTGTC 57.689 37.500 0.00 0.00 0.00 3.18
379 383 6.572519 TCATGTCTTTTTCTTTGTCTTTGGG 58.427 36.000 0.00 0.00 0.00 4.12
381 385 4.775253 TGTCTTTTTCTTTGTCTTTGGGGT 59.225 37.500 0.00 0.00 0.00 4.95
385 389 3.374042 TTCTTTGTCTTTGGGGTGTCA 57.626 42.857 0.00 0.00 0.00 3.58
396 400 1.984424 TGGGGTGTCATGTTCATCTCA 59.016 47.619 3.19 3.19 0.00 3.27
397 401 2.577563 TGGGGTGTCATGTTCATCTCAT 59.422 45.455 3.19 0.00 0.00 2.90
398 402 3.209410 GGGGTGTCATGTTCATCTCATC 58.791 50.000 0.00 0.00 0.00 2.92
399 403 3.370846 GGGGTGTCATGTTCATCTCATCA 60.371 47.826 0.00 0.00 0.00 3.07
400 404 4.458397 GGGTGTCATGTTCATCTCATCAT 58.542 43.478 0.00 0.00 0.00 2.45
401 405 4.275196 GGGTGTCATGTTCATCTCATCATG 59.725 45.833 0.00 0.00 38.96 3.07
410 421 7.514784 TGTTCATCTCATCATGTTCAACTTT 57.485 32.000 0.00 0.00 0.00 2.66
429 440 3.209812 CGGCTCGGACGATCCTCA 61.210 66.667 12.10 0.00 35.20 3.86
430 441 2.556459 CGGCTCGGACGATCCTCAT 61.556 63.158 12.10 0.00 35.20 2.90
431 442 1.287503 GGCTCGGACGATCCTCATC 59.712 63.158 7.30 0.00 33.30 2.92
432 443 1.175983 GGCTCGGACGATCCTCATCT 61.176 60.000 7.30 0.00 33.30 2.90
434 445 1.880675 GCTCGGACGATCCTCATCTTA 59.119 52.381 0.00 0.00 33.30 2.10
435 446 2.293677 GCTCGGACGATCCTCATCTTAA 59.706 50.000 0.00 0.00 33.30 1.85
436 447 3.057174 GCTCGGACGATCCTCATCTTAAT 60.057 47.826 0.00 0.00 33.30 1.40
438 449 3.255888 TCGGACGATCCTCATCTTAATGG 59.744 47.826 0.00 0.00 33.30 3.16
439 450 3.255888 CGGACGATCCTCATCTTAATGGA 59.744 47.826 0.00 0.00 33.30 3.41
441 452 5.174395 GGACGATCCTCATCTTAATGGATG 58.826 45.833 0.00 0.00 43.01 3.51
442 453 5.047021 GGACGATCCTCATCTTAATGGATGA 60.047 44.000 7.08 7.08 46.50 2.92
453 464 7.870954 TCATCTTAATGGATGATGTAACGTACC 59.129 37.037 3.84 0.00 44.65 3.34
454 465 6.210796 TCTTAATGGATGATGTAACGTACCG 58.789 40.000 0.00 0.00 0.00 4.02
455 466 2.212869 TGGATGATGTAACGTACCGC 57.787 50.000 0.00 0.00 0.00 5.68
456 467 1.752498 TGGATGATGTAACGTACCGCT 59.248 47.619 0.00 0.00 0.00 5.52
457 468 2.166870 TGGATGATGTAACGTACCGCTT 59.833 45.455 0.00 0.00 0.00 4.68
458 469 2.538449 GGATGATGTAACGTACCGCTTG 59.462 50.000 0.00 0.00 0.00 4.01
459 470 1.352114 TGATGTAACGTACCGCTTGC 58.648 50.000 0.00 0.00 0.00 4.01
460 471 1.067425 TGATGTAACGTACCGCTTGCT 60.067 47.619 0.00 0.00 0.00 3.91
461 472 2.164017 TGATGTAACGTACCGCTTGCTA 59.836 45.455 0.00 0.00 0.00 3.49
462 473 1.981254 TGTAACGTACCGCTTGCTAC 58.019 50.000 0.00 0.00 0.00 3.58
463 474 1.541147 TGTAACGTACCGCTTGCTACT 59.459 47.619 0.00 0.00 0.00 2.57
464 475 2.746904 TGTAACGTACCGCTTGCTACTA 59.253 45.455 0.00 0.00 0.00 1.82
465 476 3.378112 TGTAACGTACCGCTTGCTACTAT 59.622 43.478 0.00 0.00 0.00 2.12
466 477 3.515330 AACGTACCGCTTGCTACTATT 57.485 42.857 0.00 0.00 0.00 1.73
467 478 3.515330 ACGTACCGCTTGCTACTATTT 57.485 42.857 0.00 0.00 0.00 1.40
468 479 3.184541 ACGTACCGCTTGCTACTATTTG 58.815 45.455 0.00 0.00 0.00 2.32
469 480 3.184541 CGTACCGCTTGCTACTATTTGT 58.815 45.455 0.00 0.00 0.00 2.83
470 481 3.242248 CGTACCGCTTGCTACTATTTGTC 59.758 47.826 0.00 0.00 0.00 3.18
471 482 3.328382 ACCGCTTGCTACTATTTGTCA 57.672 42.857 0.00 0.00 0.00 3.58
472 483 3.670625 ACCGCTTGCTACTATTTGTCAA 58.329 40.909 0.00 0.00 0.00 3.18
473 484 4.069304 ACCGCTTGCTACTATTTGTCAAA 58.931 39.130 0.00 0.00 0.00 2.69
474 485 4.517453 ACCGCTTGCTACTATTTGTCAAAA 59.483 37.500 1.31 0.00 0.00 2.44
475 486 5.009210 ACCGCTTGCTACTATTTGTCAAAAA 59.991 36.000 1.31 0.00 0.00 1.94
498 509 7.751768 AAAACAAAAACAAATCCCAAGAACA 57.248 28.000 0.00 0.00 0.00 3.18
504 515 8.457261 CAAAAACAAATCCCAAGAACAAATGAA 58.543 29.630 0.00 0.00 0.00 2.57
604 621 6.028780 TGGGGTCCAATTTCTCCAAAATTAT 58.971 36.000 0.00 0.00 0.00 1.28
607 624 6.316140 GGGTCCAATTTCTCCAAAATTATTGC 59.684 38.462 0.00 0.00 0.00 3.56
608 625 6.035975 GGTCCAATTTCTCCAAAATTATTGCG 59.964 38.462 0.00 0.00 0.00 4.85
610 627 6.811170 TCCAATTTCTCCAAAATTATTGCGTC 59.189 34.615 0.00 0.00 0.00 5.19
622 639 7.766219 AAATTATTGCGTCTACGACACTTAT 57.234 32.000 6.71 0.00 43.02 1.73
623 640 6.988109 ATTATTGCGTCTACGACACTTATC 57.012 37.500 6.71 0.00 43.02 1.75
625 642 1.063027 TGCGTCTACGACACTTATCCG 59.937 52.381 6.71 0.00 43.02 4.18
628 645 3.059325 GCGTCTACGACACTTATCCGTAT 60.059 47.826 6.71 0.00 43.02 3.06
649 666 6.872020 CGTATGATTTTGGTACGATCCCTAAT 59.128 38.462 0.00 0.00 42.65 1.73
650 667 7.063074 CGTATGATTTTGGTACGATCCCTAATC 59.937 40.741 0.00 4.08 42.65 1.75
651 668 5.617252 TGATTTTGGTACGATCCCTAATCC 58.383 41.667 0.00 0.00 31.35 3.01
652 669 5.131308 TGATTTTGGTACGATCCCTAATCCA 59.869 40.000 0.00 0.00 31.35 3.41
653 670 5.438698 TTTTGGTACGATCCCTAATCCAA 57.561 39.130 0.00 0.00 0.00 3.53
654 671 5.640158 TTTGGTACGATCCCTAATCCAAT 57.360 39.130 0.00 0.00 34.26 3.16
656 673 3.326588 TGGTACGATCCCTAATCCAATGG 59.673 47.826 0.00 0.00 0.00 3.16
657 674 2.568623 ACGATCCCTAATCCAATGGC 57.431 50.000 0.00 0.00 0.00 4.40
658 675 1.774254 ACGATCCCTAATCCAATGGCA 59.226 47.619 0.00 0.00 0.00 4.92
659 676 2.376518 ACGATCCCTAATCCAATGGCAT 59.623 45.455 0.00 0.00 0.00 4.40
662 679 4.323792 CGATCCCTAATCCAATGGCATACT 60.324 45.833 0.00 0.00 0.00 2.12
663 680 4.371624 TCCCTAATCCAATGGCATACTG 57.628 45.455 0.00 0.00 0.00 2.74
676 693 3.592381 GCATACTGCCGTTTAGTCATG 57.408 47.619 0.00 0.00 37.42 3.07
677 694 2.286418 GCATACTGCCGTTTAGTCATGC 60.286 50.000 0.00 0.00 37.42 4.06
678 695 1.635844 TACTGCCGTTTAGTCATGCG 58.364 50.000 0.00 0.00 0.00 4.73
679 696 0.320421 ACTGCCGTTTAGTCATGCGT 60.320 50.000 0.00 0.00 0.00 5.24
680 697 1.067425 ACTGCCGTTTAGTCATGCGTA 60.067 47.619 0.00 0.00 0.00 4.42
681 698 2.201732 CTGCCGTTTAGTCATGCGTAT 58.798 47.619 0.00 0.00 0.00 3.06
686 703 5.137403 GCCGTTTAGTCATGCGTATAAATG 58.863 41.667 0.00 0.00 0.00 2.32
687 704 5.675970 CCGTTTAGTCATGCGTATAAATGG 58.324 41.667 11.42 11.42 37.72 3.16
688 705 5.137403 CGTTTAGTCATGCGTATAAATGGC 58.863 41.667 0.00 0.00 0.00 4.40
691 708 4.818534 AGTCATGCGTATAAATGGCTTG 57.181 40.909 0.00 0.00 35.20 4.01
692 709 4.450976 AGTCATGCGTATAAATGGCTTGA 58.549 39.130 0.00 0.00 35.20 3.02
693 710 5.065914 AGTCATGCGTATAAATGGCTTGAT 58.934 37.500 4.52 0.00 41.09 2.57
694 711 5.180117 AGTCATGCGTATAAATGGCTTGATC 59.820 40.000 4.52 0.00 41.09 2.92
695 712 4.455533 TCATGCGTATAAATGGCTTGATCC 59.544 41.667 0.00 0.00 36.37 3.36
696 713 2.805671 TGCGTATAAATGGCTTGATCCG 59.194 45.455 0.00 0.00 0.00 4.18
697 714 3.064207 GCGTATAAATGGCTTGATCCGA 58.936 45.455 0.00 0.00 0.00 4.55
699 716 4.610680 GCGTATAAATGGCTTGATCCGAAC 60.611 45.833 0.00 0.00 0.00 3.95
701 718 5.333339 CGTATAAATGGCTTGATCCGAACTG 60.333 44.000 0.00 0.00 0.00 3.16
702 719 2.496899 AATGGCTTGATCCGAACTGT 57.503 45.000 0.00 0.00 0.00 3.55
703 720 2.029838 ATGGCTTGATCCGAACTGTC 57.970 50.000 0.00 0.00 0.00 3.51
705 722 1.079503 GGCTTGATCCGAACTGTCAC 58.920 55.000 0.00 0.00 0.00 3.67
706 723 0.716108 GCTTGATCCGAACTGTCACG 59.284 55.000 0.00 0.00 0.00 4.35
707 724 1.935300 GCTTGATCCGAACTGTCACGT 60.935 52.381 0.00 0.00 0.00 4.49
708 725 2.670229 GCTTGATCCGAACTGTCACGTA 60.670 50.000 0.00 0.00 0.00 3.57
709 726 2.624316 TGATCCGAACTGTCACGTAC 57.376 50.000 0.00 0.00 0.00 3.67
710 727 2.156917 TGATCCGAACTGTCACGTACT 58.843 47.619 0.00 0.00 0.00 2.73
711 728 3.337358 TGATCCGAACTGTCACGTACTA 58.663 45.455 0.00 0.00 0.00 1.82
712 729 3.373130 TGATCCGAACTGTCACGTACTAG 59.627 47.826 0.00 0.00 0.00 2.57
713 730 3.044235 TCCGAACTGTCACGTACTAGA 57.956 47.619 0.00 0.00 0.00 2.43
714 731 2.998670 TCCGAACTGTCACGTACTAGAG 59.001 50.000 0.00 0.00 0.00 2.43
715 732 2.740981 CCGAACTGTCACGTACTAGAGT 59.259 50.000 0.00 0.00 0.00 3.24
716 733 3.181522 CCGAACTGTCACGTACTAGAGTC 60.182 52.174 0.00 0.00 0.00 3.36
717 734 3.181522 CGAACTGTCACGTACTAGAGTCC 60.182 52.174 0.00 0.00 0.00 3.85
718 735 3.699411 ACTGTCACGTACTAGAGTCCT 57.301 47.619 0.00 0.00 0.00 3.85
719 736 4.018484 ACTGTCACGTACTAGAGTCCTT 57.982 45.455 0.00 0.00 0.00 3.36
720 737 3.752222 ACTGTCACGTACTAGAGTCCTTG 59.248 47.826 0.00 0.00 0.00 3.61
721 738 3.748083 TGTCACGTACTAGAGTCCTTGT 58.252 45.455 0.00 0.00 33.20 3.16
722 739 3.501062 TGTCACGTACTAGAGTCCTTGTG 59.499 47.826 0.00 0.00 31.18 3.33
723 740 3.501445 GTCACGTACTAGAGTCCTTGTGT 59.499 47.826 0.00 0.00 31.18 3.72
724 741 3.750130 TCACGTACTAGAGTCCTTGTGTC 59.250 47.826 0.00 0.00 31.18 3.67
725 742 2.740981 ACGTACTAGAGTCCTTGTGTCG 59.259 50.000 0.00 0.00 35.30 4.35
726 743 2.740981 CGTACTAGAGTCCTTGTGTCGT 59.259 50.000 0.00 0.00 31.18 4.34
727 744 3.928992 CGTACTAGAGTCCTTGTGTCGTA 59.071 47.826 0.00 0.00 31.18 3.43
728 745 4.032672 CGTACTAGAGTCCTTGTGTCGTAG 59.967 50.000 0.00 0.00 31.18 3.51
729 746 3.345414 ACTAGAGTCCTTGTGTCGTAGG 58.655 50.000 0.00 0.00 0.00 3.18
730 747 0.889306 AGAGTCCTTGTGTCGTAGGC 59.111 55.000 0.00 0.00 0.00 3.93
731 748 0.601558 GAGTCCTTGTGTCGTAGGCA 59.398 55.000 0.00 0.00 43.93 4.75
739 756 2.896278 TGTCGTAGGCATAGCAGGT 58.104 52.632 0.00 0.00 36.97 4.00
740 757 0.744874 TGTCGTAGGCATAGCAGGTC 59.255 55.000 0.00 0.00 36.97 3.85
746 763 1.289160 AGGCATAGCAGGTCTCCAAA 58.711 50.000 0.00 0.00 0.00 3.28
751 768 3.067320 GCATAGCAGGTCTCCAAATTTCC 59.933 47.826 0.00 0.00 0.00 3.13
841 862 0.809385 TCGAGATCTTGACCGTCCAC 59.191 55.000 8.72 0.00 0.00 4.02
843 864 1.468224 CGAGATCTTGACCGTCCACTG 60.468 57.143 3.60 0.00 0.00 3.66
903 943 4.733725 TCCCCCTTCTCCCCACCG 62.734 72.222 0.00 0.00 0.00 4.94
989 1046 1.743252 CAGCTCCACGGAAGGAAGC 60.743 63.158 0.00 0.00 37.20 3.86
990 1047 2.436824 GCTCCACGGAAGGAAGCC 60.437 66.667 0.00 0.00 37.20 4.35
1257 1316 3.385749 GACCGTCACCGCCATGGAT 62.386 63.158 18.40 0.00 42.00 3.41
1359 1424 1.078759 CGCTGTTCCATCTGTCCGAC 61.079 60.000 0.00 0.00 0.00 4.79
1363 1428 0.037326 GTTCCATCTGTCCGACTGCA 60.037 55.000 0.00 0.00 0.00 4.41
1369 1434 1.253100 TCTGTCCGACTGCATGTGTA 58.747 50.000 0.00 0.00 0.00 2.90
1370 1435 1.824852 TCTGTCCGACTGCATGTGTAT 59.175 47.619 0.00 0.00 0.00 2.29
1371 1436 1.929169 CTGTCCGACTGCATGTGTATG 59.071 52.381 0.00 0.00 37.36 2.39
1405 1474 3.971971 AGGGTTTGGTCTGTAGTTAGTGT 59.028 43.478 0.00 0.00 0.00 3.55
1432 1501 3.304861 CGATGTGTATGAATGCAATGGGG 60.305 47.826 0.00 0.00 0.00 4.96
1439 1508 3.385314 TGAATGCAATGGGGAATCAGA 57.615 42.857 0.00 0.00 0.00 3.27
1477 1602 1.078709 GCATCTCTGCTGCGTGTTTA 58.921 50.000 0.00 0.00 45.32 2.01
1495 1620 6.022251 CGTGTTTATTCGATGCTTTTGTGATC 60.022 38.462 0.00 0.00 0.00 2.92
1502 1627 3.181513 CGATGCTTTTGTGATCCAGTGAG 60.182 47.826 0.00 0.00 0.00 3.51
1511 1636 3.264193 TGTGATCCAGTGAGGCTGTATTT 59.736 43.478 0.00 0.00 43.55 1.40
1572 1734 2.159627 GGTATGCACAAACGTTCTCTGG 59.840 50.000 0.00 0.00 0.00 3.86
1596 1758 6.366061 GGATTTAAATGTGTTTCTTCACCAGC 59.634 38.462 5.17 0.00 37.51 4.85
1600 1762 2.665165 TGTGTTTCTTCACCAGCCATT 58.335 42.857 0.00 0.00 37.51 3.16
1604 1766 2.887152 GTTTCTTCACCAGCCATTCTGT 59.113 45.455 0.00 0.00 41.25 3.41
1641 1804 4.763793 ACTCTGGAATTGGTCTGAATGTTG 59.236 41.667 0.00 0.00 0.00 3.33
1642 1805 3.507233 TCTGGAATTGGTCTGAATGTTGC 59.493 43.478 0.00 0.00 0.00 4.17
1662 1825 3.632604 TGCTGTTTCATCGGTTGGTTTTA 59.367 39.130 0.00 0.00 0.00 1.52
1680 1843 7.913789 TGGTTTTATCTGTGTAGTTAGTGGAT 58.086 34.615 0.00 0.00 0.00 3.41
1683 1846 7.490657 TTTATCTGTGTAGTTAGTGGATGGT 57.509 36.000 0.00 0.00 0.00 3.55
1688 1851 4.081142 TGTGTAGTTAGTGGATGGTGATGG 60.081 45.833 0.00 0.00 0.00 3.51
1744 1907 2.803030 ATCTTGGTTGCTGCATCTCT 57.197 45.000 1.84 0.00 0.00 3.10
1747 1910 0.321346 TTGGTTGCTGCATCTCTCGA 59.679 50.000 1.84 0.00 0.00 4.04
1748 1911 0.390340 TGGTTGCTGCATCTCTCGAC 60.390 55.000 1.84 0.00 0.00 4.20
1749 1912 0.390340 GGTTGCTGCATCTCTCGACA 60.390 55.000 1.84 0.00 0.00 4.35
1751 1914 1.326852 GTTGCTGCATCTCTCGACATG 59.673 52.381 1.84 0.00 0.00 3.21
1752 1915 0.533951 TGCTGCATCTCTCGACATGT 59.466 50.000 0.00 0.00 0.00 3.21
1756 1919 3.519579 CTGCATCTCTCGACATGTTTCT 58.480 45.455 0.00 0.00 0.00 2.52
1757 1920 4.676546 CTGCATCTCTCGACATGTTTCTA 58.323 43.478 0.00 0.00 0.00 2.10
1759 1922 5.284864 TGCATCTCTCGACATGTTTCTATC 58.715 41.667 0.00 0.00 0.00 2.08
1760 1923 5.068329 TGCATCTCTCGACATGTTTCTATCT 59.932 40.000 0.00 0.00 0.00 1.98
1761 1924 5.629020 GCATCTCTCGACATGTTTCTATCTC 59.371 44.000 0.00 0.00 0.00 2.75
1762 1925 5.759506 TCTCTCGACATGTTTCTATCTCC 57.240 43.478 0.00 0.00 0.00 3.71
1763 1926 5.441500 TCTCTCGACATGTTTCTATCTCCT 58.558 41.667 0.00 0.00 0.00 3.69
1764 1927 5.888724 TCTCTCGACATGTTTCTATCTCCTT 59.111 40.000 0.00 0.00 0.00 3.36
1765 1928 5.895928 TCTCGACATGTTTCTATCTCCTTG 58.104 41.667 0.00 0.00 0.00 3.61
1766 1929 4.433615 TCGACATGTTTCTATCTCCTTGC 58.566 43.478 0.00 0.00 0.00 4.01
1767 1930 3.557595 CGACATGTTTCTATCTCCTTGCC 59.442 47.826 0.00 0.00 0.00 4.52
1768 1931 3.535561 ACATGTTTCTATCTCCTTGCCG 58.464 45.455 0.00 0.00 0.00 5.69
1769 1932 2.024176 TGTTTCTATCTCCTTGCCGC 57.976 50.000 0.00 0.00 0.00 6.53
1770 1933 1.555075 TGTTTCTATCTCCTTGCCGCT 59.445 47.619 0.00 0.00 0.00 5.52
1771 1934 2.764010 TGTTTCTATCTCCTTGCCGCTA 59.236 45.455 0.00 0.00 0.00 4.26
1772 1935 3.388024 TGTTTCTATCTCCTTGCCGCTAT 59.612 43.478 0.00 0.00 0.00 2.97
1773 1936 4.587262 TGTTTCTATCTCCTTGCCGCTATA 59.413 41.667 0.00 0.00 0.00 1.31
1774 1937 4.785511 TTCTATCTCCTTGCCGCTATAC 57.214 45.455 0.00 0.00 0.00 1.47
1775 1938 3.090037 TCTATCTCCTTGCCGCTATACC 58.910 50.000 0.00 0.00 0.00 2.73
1776 1939 1.717032 ATCTCCTTGCCGCTATACCA 58.283 50.000 0.00 0.00 0.00 3.25
1777 1940 1.491668 TCTCCTTGCCGCTATACCAA 58.508 50.000 0.00 0.00 0.00 3.67
1778 1941 1.138266 TCTCCTTGCCGCTATACCAAC 59.862 52.381 0.00 0.00 0.00 3.77
1779 1942 1.139058 CTCCTTGCCGCTATACCAACT 59.861 52.381 0.00 0.00 0.00 3.16
1780 1943 1.557832 TCCTTGCCGCTATACCAACTT 59.442 47.619 0.00 0.00 0.00 2.66
1781 1944 1.670811 CCTTGCCGCTATACCAACTTG 59.329 52.381 0.00 0.00 0.00 3.16
1782 1945 2.356135 CTTGCCGCTATACCAACTTGT 58.644 47.619 0.00 0.00 0.00 3.16
1783 1946 2.483014 TGCCGCTATACCAACTTGTT 57.517 45.000 0.00 0.00 0.00 2.83
1784 1947 3.613494 TGCCGCTATACCAACTTGTTA 57.387 42.857 0.00 0.00 0.00 2.41
1785 1948 3.264104 TGCCGCTATACCAACTTGTTAC 58.736 45.455 0.00 0.00 0.00 2.50
1786 1949 2.610833 GCCGCTATACCAACTTGTTACC 59.389 50.000 0.00 0.00 0.00 2.85
1787 1950 3.680754 GCCGCTATACCAACTTGTTACCT 60.681 47.826 0.00 0.00 0.00 3.08
1788 1951 3.869246 CCGCTATACCAACTTGTTACCTG 59.131 47.826 0.00 0.00 0.00 4.00
1789 1952 4.382254 CCGCTATACCAACTTGTTACCTGA 60.382 45.833 0.00 0.00 0.00 3.86
1790 1953 5.172934 CGCTATACCAACTTGTTACCTGAA 58.827 41.667 0.00 0.00 0.00 3.02
1791 1954 5.815740 CGCTATACCAACTTGTTACCTGAAT 59.184 40.000 0.00 0.00 0.00 2.57
1792 1955 6.315393 CGCTATACCAACTTGTTACCTGAATT 59.685 38.462 0.00 0.00 0.00 2.17
1793 1956 7.465513 CGCTATACCAACTTGTTACCTGAATTC 60.466 40.741 0.00 0.00 0.00 2.17
1794 1957 7.335924 GCTATACCAACTTGTTACCTGAATTCA 59.664 37.037 8.12 8.12 0.00 2.57
1795 1958 7.687941 ATACCAACTTGTTACCTGAATTCAG 57.312 36.000 25.75 25.75 43.40 3.02
1796 1959 5.445964 ACCAACTTGTTACCTGAATTCAGT 58.554 37.500 29.03 20.39 42.27 3.41
1797 1960 6.597562 ACCAACTTGTTACCTGAATTCAGTA 58.402 36.000 29.03 19.53 42.27 2.74
1798 1961 6.485648 ACCAACTTGTTACCTGAATTCAGTAC 59.514 38.462 29.03 23.07 42.27 2.73
1799 1962 6.710744 CCAACTTGTTACCTGAATTCAGTACT 59.289 38.462 29.03 15.97 42.27 2.73
1800 1963 7.228706 CCAACTTGTTACCTGAATTCAGTACTT 59.771 37.037 29.03 15.33 42.27 2.24
1801 1964 8.621286 CAACTTGTTACCTGAATTCAGTACTTT 58.379 33.333 29.03 16.22 42.27 2.66
1802 1965 8.154649 ACTTGTTACCTGAATTCAGTACTTTG 57.845 34.615 29.03 17.29 42.27 2.77
1807 1970 3.425359 CCTGAATTCAGTACTTTGCTGCG 60.425 47.826 29.03 9.52 42.27 5.18
1823 1986 4.440214 CGGCATTGTTCGCTGAAC 57.560 55.556 12.53 12.53 42.26 3.18
1835 1998 1.856012 GCTGAACTCACTGACACGC 59.144 57.895 0.00 0.00 0.00 5.34
1845 2008 2.033236 TCACTGACACGCAATTTCGTTC 60.033 45.455 0.00 3.53 41.21 3.95
1846 2009 1.937223 ACTGACACGCAATTTCGTTCA 59.063 42.857 0.00 7.66 41.21 3.18
1847 2010 2.353269 ACTGACACGCAATTTCGTTCAA 59.647 40.909 0.00 0.00 41.21 2.69
1848 2011 3.003275 ACTGACACGCAATTTCGTTCAAT 59.997 39.130 0.00 0.00 41.21 2.57
1849 2012 4.212425 ACTGACACGCAATTTCGTTCAATA 59.788 37.500 0.00 0.00 41.21 1.90
1850 2013 4.459606 TGACACGCAATTTCGTTCAATAC 58.540 39.130 0.00 0.00 41.21 1.89
1866 2029 7.307839 GTTCAATACGATATTTTGCCGAATG 57.692 36.000 0.00 0.00 0.00 2.67
1867 2030 5.448438 TCAATACGATATTTTGCCGAATGC 58.552 37.500 0.00 0.00 41.77 3.56
1878 2041 2.514205 GCCGAATGCATGCCTAAATT 57.486 45.000 16.68 8.03 40.77 1.82
1879 2042 2.825205 GCCGAATGCATGCCTAAATTT 58.175 42.857 16.68 0.00 40.77 1.82
1880 2043 2.796593 GCCGAATGCATGCCTAAATTTC 59.203 45.455 16.68 7.70 40.77 2.17
1881 2044 3.491447 GCCGAATGCATGCCTAAATTTCT 60.491 43.478 16.68 0.00 40.77 2.52
1882 2045 4.046462 CCGAATGCATGCCTAAATTTCTG 58.954 43.478 16.68 2.89 0.00 3.02
1883 2046 4.440525 CCGAATGCATGCCTAAATTTCTGT 60.441 41.667 16.68 0.00 0.00 3.41
1884 2047 4.736793 CGAATGCATGCCTAAATTTCTGTC 59.263 41.667 16.68 0.00 0.00 3.51
1885 2048 5.449588 CGAATGCATGCCTAAATTTCTGTCT 60.450 40.000 16.68 0.00 0.00 3.41
1886 2049 4.970662 TGCATGCCTAAATTTCTGTCTC 57.029 40.909 16.68 0.00 0.00 3.36
1887 2050 4.334552 TGCATGCCTAAATTTCTGTCTCA 58.665 39.130 16.68 0.00 0.00 3.27
1888 2051 4.766373 TGCATGCCTAAATTTCTGTCTCAA 59.234 37.500 16.68 0.00 0.00 3.02
1889 2052 5.243507 TGCATGCCTAAATTTCTGTCTCAAA 59.756 36.000 16.68 0.00 0.00 2.69
1890 2053 6.158598 GCATGCCTAAATTTCTGTCTCAAAA 58.841 36.000 6.36 0.00 0.00 2.44
1891 2054 6.646240 GCATGCCTAAATTTCTGTCTCAAAAA 59.354 34.615 6.36 0.00 0.00 1.94
1892 2055 7.148689 GCATGCCTAAATTTCTGTCTCAAAAAG 60.149 37.037 6.36 0.00 0.00 2.27
1893 2056 7.581213 TGCCTAAATTTCTGTCTCAAAAAGA 57.419 32.000 0.00 0.00 0.00 2.52
1894 2057 7.651808 TGCCTAAATTTCTGTCTCAAAAAGAG 58.348 34.615 0.00 0.00 46.14 2.85
1895 2058 6.584184 GCCTAAATTTCTGTCTCAAAAAGAGC 59.416 38.462 0.00 0.00 44.35 4.09
1896 2059 7.651808 CCTAAATTTCTGTCTCAAAAAGAGCA 58.348 34.615 0.00 0.00 44.35 4.26
1897 2060 8.302438 CCTAAATTTCTGTCTCAAAAAGAGCAT 58.698 33.333 0.00 0.00 44.35 3.79
1900 2063 9.852091 AAATTTCTGTCTCAAAAAGAGCATATC 57.148 29.630 0.00 0.00 44.35 1.63
1901 2064 7.984422 TTTCTGTCTCAAAAAGAGCATATCA 57.016 32.000 0.00 0.00 44.35 2.15
1902 2065 6.974932 TCTGTCTCAAAAAGAGCATATCAC 57.025 37.500 0.00 0.00 44.35 3.06
1903 2066 5.578336 TCTGTCTCAAAAAGAGCATATCACG 59.422 40.000 0.00 0.00 44.35 4.35
1904 2067 4.093408 TGTCTCAAAAAGAGCATATCACGC 59.907 41.667 0.00 0.00 44.35 5.34
1905 2068 4.093408 GTCTCAAAAAGAGCATATCACGCA 59.907 41.667 0.00 0.00 44.35 5.24
1906 2069 4.330894 TCTCAAAAAGAGCATATCACGCAG 59.669 41.667 0.00 0.00 44.35 5.18
1907 2070 3.103738 CAAAAAGAGCATATCACGCAGC 58.896 45.455 0.00 0.00 0.00 5.25
1908 2071 0.933097 AAAGAGCATATCACGCAGCG 59.067 50.000 14.82 14.82 0.00 5.18
1909 2072 1.493950 AAGAGCATATCACGCAGCGC 61.494 55.000 16.61 0.00 0.00 5.92
1921 2084 3.782244 CAGCGCGTGGAGCTCAAC 61.782 66.667 17.19 14.34 44.06 3.18
1922 2085 4.299547 AGCGCGTGGAGCTCAACA 62.300 61.111 21.19 5.28 41.83 3.33
1923 2086 4.077188 GCGCGTGGAGCTCAACAC 62.077 66.667 21.19 16.12 45.59 3.32
1927 2090 2.031163 GTGGAGCTCAACACGGCT 59.969 61.111 16.79 0.00 41.88 5.52
1928 2091 1.598130 GTGGAGCTCAACACGGCTT 60.598 57.895 16.79 0.00 39.05 4.35
1929 2092 1.597854 TGGAGCTCAACACGGCTTG 60.598 57.895 17.19 0.00 39.05 4.01
1930 2093 2.328099 GGAGCTCAACACGGCTTGG 61.328 63.158 17.19 0.00 39.05 3.61
1931 2094 2.281761 AGCTCAACACGGCTTGGG 60.282 61.111 0.00 0.00 34.96 4.12
1932 2095 3.365265 GCTCAACACGGCTTGGGG 61.365 66.667 0.00 0.00 0.00 4.96
1933 2096 2.429930 CTCAACACGGCTTGGGGA 59.570 61.111 0.00 0.00 0.00 4.81
1934 2097 1.002134 CTCAACACGGCTTGGGGAT 60.002 57.895 0.00 0.00 0.00 3.85
1935 2098 0.609131 CTCAACACGGCTTGGGGATT 60.609 55.000 0.00 0.00 0.00 3.01
1936 2099 0.608035 TCAACACGGCTTGGGGATTC 60.608 55.000 0.00 0.00 0.00 2.52
1937 2100 1.304134 AACACGGCTTGGGGATTCC 60.304 57.895 0.00 0.00 0.00 3.01
1938 2101 2.075355 AACACGGCTTGGGGATTCCA 62.075 55.000 4.80 0.00 45.43 3.53
1945 2108 3.727258 TGGGGATTCCAGCACCCG 61.727 66.667 4.80 0.00 46.38 5.28
1946 2109 3.728373 GGGGATTCCAGCACCCGT 61.728 66.667 4.80 0.00 44.09 5.28
1947 2110 2.355115 GGGATTCCAGCACCCGTT 59.645 61.111 4.80 0.00 34.03 4.44
1948 2111 1.749258 GGGATTCCAGCACCCGTTC 60.749 63.158 4.80 0.00 34.03 3.95
1949 2112 1.002624 GGATTCCAGCACCCGTTCA 60.003 57.895 0.00 0.00 0.00 3.18
1950 2113 0.394352 GGATTCCAGCACCCGTTCAT 60.394 55.000 0.00 0.00 0.00 2.57
1951 2114 1.463674 GATTCCAGCACCCGTTCATT 58.536 50.000 0.00 0.00 0.00 2.57
1952 2115 1.133025 GATTCCAGCACCCGTTCATTG 59.867 52.381 0.00 0.00 0.00 2.82
1953 2116 1.523154 TTCCAGCACCCGTTCATTGC 61.523 55.000 0.00 0.00 36.45 3.56
1957 2120 1.007849 GCACCCGTTCATTGCGTTT 60.008 52.632 0.00 0.00 0.00 3.60
1976 2139 6.584563 TGCGTTTCTTTTCTATTTGGTTATGC 59.415 34.615 0.00 0.00 0.00 3.14
1979 2142 5.243426 TCTTTTCTATTTGGTTATGCGCC 57.757 39.130 4.18 0.00 0.00 6.53
1987 2150 1.539157 TGGTTATGCGCCAATGTTCA 58.461 45.000 4.18 0.00 32.29 3.18
1995 2158 1.238439 CGCCAATGTTCACTGGACTT 58.762 50.000 4.42 0.00 34.35 3.01
1996 2159 1.608590 CGCCAATGTTCACTGGACTTT 59.391 47.619 4.42 0.00 34.35 2.66
1998 2161 2.362077 GCCAATGTTCACTGGACTTTGT 59.638 45.455 12.78 0.00 34.35 2.83
1999 2162 3.181476 GCCAATGTTCACTGGACTTTGTT 60.181 43.478 12.78 0.00 34.35 2.83
2005 2169 4.764823 TGTTCACTGGACTTTGTTTGTTCT 59.235 37.500 0.00 0.00 0.00 3.01
2016 2180 7.156876 ACTTTGTTTGTTCTTCATCAGTCAA 57.843 32.000 0.00 0.00 0.00 3.18
2017 2181 7.253422 ACTTTGTTTGTTCTTCATCAGTCAAG 58.747 34.615 0.00 0.00 0.00 3.02
2099 2265 3.998099 TTGCACAATTGGACGATTTCA 57.002 38.095 10.83 0.00 0.00 2.69
2101 2267 2.253603 GCACAATTGGACGATTTCAGC 58.746 47.619 10.83 0.00 0.00 4.26
2102 2268 2.867429 CACAATTGGACGATTTCAGCC 58.133 47.619 10.83 0.00 0.00 4.85
2107 2273 2.270352 TGGACGATTTCAGCCAACTT 57.730 45.000 0.00 0.00 0.00 2.66
2117 2283 7.094377 ACGATTTCAGCCAACTTGTTATACAAT 60.094 33.333 0.00 0.00 37.48 2.71
2120 2286 6.892658 TCAGCCAACTTGTTATACAATTGT 57.107 33.333 16.68 16.68 37.48 2.71
2133 2299 3.110447 ACAATTGTCCATTGCACAACC 57.890 42.857 4.92 0.00 45.74 3.77
2134 2300 2.060284 CAATTGTCCATTGCACAACCG 58.940 47.619 0.00 0.00 36.59 4.44
2161 2327 5.065914 AGTTGTCTGCTATGTTTGTGTGAT 58.934 37.500 0.00 0.00 0.00 3.06
2162 2328 5.532406 AGTTGTCTGCTATGTTTGTGTGATT 59.468 36.000 0.00 0.00 0.00 2.57
2178 2344 2.562298 GTGATTTGCCATCCTTGACCAA 59.438 45.455 0.00 0.00 0.00 3.67
2184 2350 1.556911 GCCATCCTTGACCAAGAGAGA 59.443 52.381 11.06 1.23 40.79 3.10
2185 2351 2.419851 GCCATCCTTGACCAAGAGAGAG 60.420 54.545 11.06 4.47 40.79 3.20
2186 2352 3.102972 CCATCCTTGACCAAGAGAGAGA 58.897 50.000 11.06 0.56 40.79 3.10
2187 2353 3.710677 CCATCCTTGACCAAGAGAGAGAT 59.289 47.826 11.06 2.74 40.79 2.75
2188 2354 4.202243 CCATCCTTGACCAAGAGAGAGATC 60.202 50.000 11.06 0.00 40.79 2.75
2189 2355 4.329638 TCCTTGACCAAGAGAGAGATCT 57.670 45.455 11.06 0.00 40.79 2.75
2198 2371 4.340950 CCAAGAGAGAGATCTAGACCAACC 59.659 50.000 0.00 0.00 0.00 3.77
2199 2372 4.871871 AGAGAGAGATCTAGACCAACCA 57.128 45.455 0.00 0.00 0.00 3.67
2200 2373 5.199982 AGAGAGAGATCTAGACCAACCAA 57.800 43.478 0.00 0.00 0.00 3.67
2204 2377 6.494952 AGAGAGATCTAGACCAACCAAGTTA 58.505 40.000 0.00 0.00 0.00 2.24
2206 2379 6.257586 AGAGATCTAGACCAACCAAGTTACT 58.742 40.000 0.00 0.00 0.00 2.24
2209 2382 3.644265 TCTAGACCAACCAAGTTACTGCA 59.356 43.478 0.00 0.00 0.00 4.41
2229 2402 1.908344 TTGCTGGCAATCTTGTGCTA 58.092 45.000 3.72 0.00 44.31 3.49
2248 2421 2.464157 AGAGTACTTTGTCAGCTGCC 57.536 50.000 9.47 0.00 0.00 4.85
2272 2445 4.278419 AGTTTGCTACTGGGACATGTTTTC 59.722 41.667 0.00 0.00 38.20 2.29
2273 2446 2.790433 TGCTACTGGGACATGTTTTCC 58.210 47.619 0.00 3.30 38.20 3.13
2274 2447 1.737793 GCTACTGGGACATGTTTTCCG 59.262 52.381 0.00 2.65 38.20 4.30
2275 2448 2.614481 GCTACTGGGACATGTTTTCCGA 60.614 50.000 0.00 0.00 38.20 4.55
2276 2449 2.185004 ACTGGGACATGTTTTCCGAG 57.815 50.000 11.17 11.17 42.97 4.63
2277 2450 1.420138 ACTGGGACATGTTTTCCGAGT 59.580 47.619 12.26 12.26 44.77 4.18
2279 2452 3.071892 ACTGGGACATGTTTTCCGAGTAA 59.928 43.478 15.34 0.00 46.91 2.24
2280 2453 4.261801 CTGGGACATGTTTTCCGAGTAAT 58.738 43.478 0.00 0.00 38.20 1.89
2281 2454 4.658063 TGGGACATGTTTTCCGAGTAATT 58.342 39.130 0.00 0.00 33.43 1.40
2282 2455 5.806818 TGGGACATGTTTTCCGAGTAATTA 58.193 37.500 0.00 0.00 33.43 1.40
2284 2457 6.887545 TGGGACATGTTTTCCGAGTAATTATT 59.112 34.615 0.00 0.00 33.43 1.40
2285 2458 7.394923 TGGGACATGTTTTCCGAGTAATTATTT 59.605 33.333 0.00 0.00 33.43 1.40
2301 2474 8.932791 AGTAATTATTTATTTGATACCGCTCCG 58.067 33.333 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.303794 AGGCCTGATAACCCACAAGTATA 58.696 43.478 3.11 0.00 0.00 1.47
5 6 3.123273 AGGCCTGATAACCCACAAGTAT 58.877 45.455 3.11 0.00 0.00 2.12
6 7 2.557869 AGGCCTGATAACCCACAAGTA 58.442 47.619 3.11 0.00 0.00 2.24
7 8 1.372501 AGGCCTGATAACCCACAAGT 58.627 50.000 3.11 0.00 0.00 3.16
8 9 2.369394 GAAGGCCTGATAACCCACAAG 58.631 52.381 5.69 0.00 0.00 3.16
9 10 1.339631 CGAAGGCCTGATAACCCACAA 60.340 52.381 5.69 0.00 0.00 3.33
10 11 0.251916 CGAAGGCCTGATAACCCACA 59.748 55.000 5.69 0.00 0.00 4.17
11 12 0.252197 ACGAAGGCCTGATAACCCAC 59.748 55.000 5.69 0.00 0.00 4.61
12 13 0.539986 GACGAAGGCCTGATAACCCA 59.460 55.000 5.69 0.00 0.00 4.51
13 14 0.831307 AGACGAAGGCCTGATAACCC 59.169 55.000 5.69 0.00 0.00 4.11
14 15 2.280628 CAAGACGAAGGCCTGATAACC 58.719 52.381 5.69 0.00 0.00 2.85
15 16 2.093658 TCCAAGACGAAGGCCTGATAAC 60.094 50.000 5.69 0.00 0.00 1.89
16 17 2.168521 CTCCAAGACGAAGGCCTGATAA 59.831 50.000 5.69 0.00 0.00 1.75
17 18 1.757118 CTCCAAGACGAAGGCCTGATA 59.243 52.381 5.69 0.00 0.00 2.15
18 19 0.539051 CTCCAAGACGAAGGCCTGAT 59.461 55.000 5.69 0.00 0.00 2.90
19 20 1.975327 CTCCAAGACGAAGGCCTGA 59.025 57.895 5.69 0.00 0.00 3.86
20 21 1.743252 GCTCCAAGACGAAGGCCTG 60.743 63.158 5.69 0.00 0.00 4.85
46 47 0.981183 AACGCTAGTCCCCACATTCA 59.019 50.000 0.00 0.00 0.00 2.57
47 48 2.109425 AAACGCTAGTCCCCACATTC 57.891 50.000 0.00 0.00 0.00 2.67
49 50 1.613255 CCAAAACGCTAGTCCCCACAT 60.613 52.381 0.00 0.00 0.00 3.21
51 52 0.035739 TCCAAAACGCTAGTCCCCAC 59.964 55.000 0.00 0.00 0.00 4.61
64 65 2.806745 CGACAGAAGAGCACCTCCAAAA 60.807 50.000 0.00 0.00 0.00 2.44
65 66 1.270305 CGACAGAAGAGCACCTCCAAA 60.270 52.381 0.00 0.00 0.00 3.28
76 77 2.338620 CGCACACCCGACAGAAGA 59.661 61.111 0.00 0.00 0.00 2.87
77 78 3.414700 GCGCACACCCGACAGAAG 61.415 66.667 0.30 0.00 0.00 2.85
82 83 1.693083 GACTAATGCGCACACCCGAC 61.693 60.000 14.90 0.00 0.00 4.79
83 84 1.447140 GACTAATGCGCACACCCGA 60.447 57.895 14.90 0.00 0.00 5.14
84 85 1.019278 AAGACTAATGCGCACACCCG 61.019 55.000 14.90 1.89 0.00 5.28
86 87 3.621268 TCAATAAGACTAATGCGCACACC 59.379 43.478 14.90 0.00 0.00 4.16
93 94 5.278660 CCTGGCCAATCAATAAGACTAATGC 60.279 44.000 7.01 0.00 0.00 3.56
98 99 4.322057 AACCTGGCCAATCAATAAGACT 57.678 40.909 7.01 0.00 0.00 3.24
104 105 2.607499 TCACAAACCTGGCCAATCAAT 58.393 42.857 7.01 0.00 0.00 2.57
111 112 0.244721 GCTCATTCACAAACCTGGCC 59.755 55.000 0.00 0.00 0.00 5.36
113 114 0.523072 CGGCTCATTCACAAACCTGG 59.477 55.000 0.00 0.00 0.00 4.45
114 115 0.523072 CCGGCTCATTCACAAACCTG 59.477 55.000 0.00 0.00 0.00 4.00
115 116 0.400213 TCCGGCTCATTCACAAACCT 59.600 50.000 0.00 0.00 0.00 3.50
116 117 1.133025 CATCCGGCTCATTCACAAACC 59.867 52.381 0.00 0.00 0.00 3.27
117 118 1.468054 GCATCCGGCTCATTCACAAAC 60.468 52.381 0.00 0.00 40.25 2.93
118 119 0.810648 GCATCCGGCTCATTCACAAA 59.189 50.000 0.00 0.00 40.25 2.83
120 121 4.223800 GCATCCGGCTCATTCACA 57.776 55.556 0.00 0.00 40.25 3.58
146 147 1.134907 TGGACTCGCTAACCCGATTTC 60.135 52.381 0.00 0.00 36.54 2.17
149 150 1.814527 GTGGACTCGCTAACCCGAT 59.185 57.895 0.00 0.00 36.54 4.18
174 175 1.918957 ACAGAAAGAGGGGATCCAAGG 59.081 52.381 15.23 0.00 34.83 3.61
188 189 5.306937 TCAAGGAGGAGTGTTGATACAGAAA 59.693 40.000 0.00 0.00 34.24 2.52
192 193 4.808414 CTCAAGGAGGAGTGTTGATACA 57.192 45.455 0.00 0.00 30.03 2.29
250 254 2.427232 TTGAACAAGCAAGCAGATGC 57.573 45.000 0.00 0.00 46.78 3.91
252 256 4.859304 TCATTTGAACAAGCAAGCAGAT 57.141 36.364 0.00 0.00 0.00 2.90
265 269 5.771666 ACTTCAGCCTTCATCTTCATTTGAA 59.228 36.000 0.00 0.00 0.00 2.69
267 271 5.392811 GGACTTCAGCCTTCATCTTCATTTG 60.393 44.000 0.00 0.00 0.00 2.32
269 273 4.018597 AGGACTTCAGCCTTCATCTTCATT 60.019 41.667 0.00 0.00 29.44 2.57
281 285 0.968393 ACGAGAGGAGGACTTCAGCC 60.968 60.000 0.00 0.00 0.00 4.85
284 288 2.317040 ACAAACGAGAGGAGGACTTCA 58.683 47.619 0.00 0.00 0.00 3.02
291 295 3.917329 TGACACTACAAACGAGAGGAG 57.083 47.619 0.00 0.00 0.00 3.69
296 300 3.624900 TCTCGTTGACACTACAAACGAG 58.375 45.455 23.88 23.88 43.52 4.18
298 302 4.376008 CCAATCTCGTTGACACTACAAACG 60.376 45.833 0.98 0.98 40.37 3.60
300 304 4.509970 CACCAATCTCGTTGACACTACAAA 59.490 41.667 0.00 0.00 40.37 2.83
301 305 4.055360 CACCAATCTCGTTGACACTACAA 58.945 43.478 0.00 0.00 40.37 2.41
302 306 3.319689 TCACCAATCTCGTTGACACTACA 59.680 43.478 0.00 0.00 40.37 2.74
303 307 3.909430 TCACCAATCTCGTTGACACTAC 58.091 45.455 0.00 0.00 40.37 2.73
304 308 4.801330 ATCACCAATCTCGTTGACACTA 57.199 40.909 0.00 0.00 40.37 2.74
305 309 3.685139 ATCACCAATCTCGTTGACACT 57.315 42.857 0.00 0.00 40.37 3.55
319 323 1.228094 TCGCCACTTGCAATCACCA 60.228 52.632 0.00 0.00 41.33 4.17
326 330 1.785041 GCAAAGAGTCGCCACTTGCA 61.785 55.000 2.24 0.00 41.33 4.08
344 348 6.287525 AGAAAAAGACATGAGAGCTATAGGC 58.712 40.000 0.00 0.00 42.19 3.93
351 355 6.311055 AGACAAAGAAAAAGACATGAGAGC 57.689 37.500 0.00 0.00 0.00 4.09
356 360 5.754890 CCCCAAAGACAAAGAAAAAGACATG 59.245 40.000 0.00 0.00 0.00 3.21
371 375 2.582052 TGAACATGACACCCCAAAGAC 58.418 47.619 0.00 0.00 0.00 3.01
373 377 3.424703 AGATGAACATGACACCCCAAAG 58.575 45.455 0.00 0.00 0.00 2.77
379 383 4.880120 ACATGATGAGATGAACATGACACC 59.120 41.667 0.00 0.00 41.45 4.16
381 385 6.174760 TGAACATGATGAGATGAACATGACA 58.825 36.000 0.00 0.00 41.45 3.58
385 389 7.698506 AAGTTGAACATGATGAGATGAACAT 57.301 32.000 0.00 0.00 0.00 2.71
396 400 2.749621 GAGCCGGAAAGTTGAACATGAT 59.250 45.455 5.05 0.00 0.00 2.45
397 401 2.151202 GAGCCGGAAAGTTGAACATGA 58.849 47.619 5.05 0.00 0.00 3.07
398 402 1.135972 CGAGCCGGAAAGTTGAACATG 60.136 52.381 5.05 0.00 0.00 3.21
399 403 1.156736 CGAGCCGGAAAGTTGAACAT 58.843 50.000 5.05 0.00 0.00 2.71
400 404 2.612200 CGAGCCGGAAAGTTGAACA 58.388 52.632 5.05 0.00 0.00 3.18
428 439 8.018677 GGTACGTTACATCATCCATTAAGATG 57.981 38.462 0.00 0.00 44.21 2.90
451 462 3.328382 TGACAAATAGTAGCAAGCGGT 57.672 42.857 0.00 0.00 0.00 5.68
473 484 8.171164 TGTTCTTGGGATTTGTTTTTGTTTTT 57.829 26.923 0.00 0.00 0.00 1.94
474 485 7.751768 TGTTCTTGGGATTTGTTTTTGTTTT 57.248 28.000 0.00 0.00 0.00 2.43
475 486 7.751768 TTGTTCTTGGGATTTGTTTTTGTTT 57.248 28.000 0.00 0.00 0.00 2.83
476 487 7.751768 TTTGTTCTTGGGATTTGTTTTTGTT 57.248 28.000 0.00 0.00 0.00 2.83
478 489 7.983307 TCATTTGTTCTTGGGATTTGTTTTTG 58.017 30.769 0.00 0.00 0.00 2.44
483 494 7.550196 GCATATTCATTTGTTCTTGGGATTTGT 59.450 33.333 0.00 0.00 0.00 2.83
484 495 7.767198 AGCATATTCATTTGTTCTTGGGATTTG 59.233 33.333 0.00 0.00 0.00 2.32
490 501 5.412640 TGCAGCATATTCATTTGTTCTTGG 58.587 37.500 0.00 0.00 0.00 3.61
493 504 6.519679 TCTTGCAGCATATTCATTTGTTCT 57.480 33.333 0.00 0.00 0.00 3.01
495 506 5.579511 GCTTCTTGCAGCATATTCATTTGTT 59.420 36.000 0.00 0.00 42.31 2.83
528 545 6.811954 TGAAACATTCAATCCATCCATCATG 58.188 36.000 0.00 0.00 36.59 3.07
554 571 4.653868 TGCCTTCCCGTTTTATTACTTGA 58.346 39.130 0.00 0.00 0.00 3.02
555 572 5.379732 TTGCCTTCCCGTTTTATTACTTG 57.620 39.130 0.00 0.00 0.00 3.16
556 573 6.408107 TTTTGCCTTCCCGTTTTATTACTT 57.592 33.333 0.00 0.00 0.00 2.24
557 574 6.394809 CATTTTGCCTTCCCGTTTTATTACT 58.605 36.000 0.00 0.00 0.00 2.24
558 575 5.579119 CCATTTTGCCTTCCCGTTTTATTAC 59.421 40.000 0.00 0.00 0.00 1.89
608 625 6.238610 ATCATACGGATAAGTGTCGTAGAC 57.761 41.667 0.00 0.00 46.80 2.59
610 627 7.096189 CCAAAATCATACGGATAAGTGTCGTAG 60.096 40.741 0.00 0.00 41.62 3.51
622 639 4.501915 GGGATCGTACCAAAATCATACGGA 60.502 45.833 3.49 0.00 41.52 4.69
623 640 3.744426 GGGATCGTACCAAAATCATACGG 59.256 47.826 3.49 0.00 41.52 4.02
625 642 7.333672 GGATTAGGGATCGTACCAAAATCATAC 59.666 40.741 18.18 0.00 35.85 2.39
628 645 5.131308 TGGATTAGGGATCGTACCAAAATCA 59.869 40.000 18.18 9.51 35.85 2.57
657 674 2.033747 CGCATGACTAAACGGCAGTATG 60.034 50.000 0.00 0.00 40.87 2.39
658 675 2.201732 CGCATGACTAAACGGCAGTAT 58.798 47.619 0.00 0.00 0.00 2.12
659 676 1.067425 ACGCATGACTAAACGGCAGTA 60.067 47.619 0.00 0.00 0.00 2.74
662 679 2.303163 ATACGCATGACTAAACGGCA 57.697 45.000 0.00 0.00 0.00 5.69
663 680 4.782252 TTTATACGCATGACTAAACGGC 57.218 40.909 0.00 0.00 0.00 5.68
665 682 5.050363 AGCCATTTATACGCATGACTAAACG 60.050 40.000 0.00 0.00 0.00 3.60
666 683 6.300354 AGCCATTTATACGCATGACTAAAC 57.700 37.500 0.00 0.00 0.00 2.01
667 684 6.540551 TCAAGCCATTTATACGCATGACTAAA 59.459 34.615 0.00 0.00 0.00 1.85
668 685 6.052360 TCAAGCCATTTATACGCATGACTAA 58.948 36.000 0.00 0.00 0.00 2.24
669 686 5.606505 TCAAGCCATTTATACGCATGACTA 58.393 37.500 0.00 0.00 0.00 2.59
670 687 4.450976 TCAAGCCATTTATACGCATGACT 58.549 39.130 0.00 0.00 0.00 3.41
675 692 2.805671 CGGATCAAGCCATTTATACGCA 59.194 45.455 0.00 0.00 0.00 5.24
676 693 3.064207 TCGGATCAAGCCATTTATACGC 58.936 45.455 0.00 0.00 0.00 4.42
677 694 4.750098 AGTTCGGATCAAGCCATTTATACG 59.250 41.667 0.00 0.00 0.00 3.06
678 695 5.527582 ACAGTTCGGATCAAGCCATTTATAC 59.472 40.000 0.00 0.00 0.00 1.47
679 696 5.680619 ACAGTTCGGATCAAGCCATTTATA 58.319 37.500 0.00 0.00 0.00 0.98
680 697 4.526970 ACAGTTCGGATCAAGCCATTTAT 58.473 39.130 0.00 0.00 0.00 1.40
681 698 3.938963 GACAGTTCGGATCAAGCCATTTA 59.061 43.478 0.00 0.00 0.00 1.40
686 703 1.079503 GTGACAGTTCGGATCAAGCC 58.920 55.000 0.00 0.00 0.00 4.35
687 704 0.716108 CGTGACAGTTCGGATCAAGC 59.284 55.000 0.00 0.00 0.00 4.01
688 705 2.065993 ACGTGACAGTTCGGATCAAG 57.934 50.000 0.00 0.00 0.00 3.02
691 708 2.915738 AGTACGTGACAGTTCGGATC 57.084 50.000 0.00 0.00 0.00 3.36
692 709 3.603532 TCTAGTACGTGACAGTTCGGAT 58.396 45.455 0.00 0.00 0.00 4.18
693 710 2.998670 CTCTAGTACGTGACAGTTCGGA 59.001 50.000 0.00 0.00 0.00 4.55
694 711 2.740981 ACTCTAGTACGTGACAGTTCGG 59.259 50.000 0.00 0.00 0.00 4.30
695 712 3.181522 GGACTCTAGTACGTGACAGTTCG 60.182 52.174 0.00 0.00 0.00 3.95
696 713 4.002316 AGGACTCTAGTACGTGACAGTTC 58.998 47.826 0.00 0.00 33.01 3.01
697 714 4.018484 AGGACTCTAGTACGTGACAGTT 57.982 45.455 0.00 0.00 33.01 3.16
699 716 3.752222 ACAAGGACTCTAGTACGTGACAG 59.248 47.826 14.16 0.00 40.17 3.51
701 718 3.501445 ACACAAGGACTCTAGTACGTGAC 59.499 47.826 14.16 0.00 40.17 3.67
702 719 3.748083 ACACAAGGACTCTAGTACGTGA 58.252 45.455 14.16 0.00 40.17 4.35
703 720 3.424565 CGACACAAGGACTCTAGTACGTG 60.425 52.174 6.71 6.71 42.81 4.49
705 722 2.740981 ACGACACAAGGACTCTAGTACG 59.259 50.000 0.00 0.00 33.01 3.67
706 723 4.332268 CCTACGACACAAGGACTCTAGTAC 59.668 50.000 0.00 0.00 34.58 2.73
707 724 4.511527 CCTACGACACAAGGACTCTAGTA 58.488 47.826 0.00 0.00 34.58 1.82
708 725 3.345414 CCTACGACACAAGGACTCTAGT 58.655 50.000 0.00 0.00 34.58 2.57
709 726 2.097791 GCCTACGACACAAGGACTCTAG 59.902 54.545 0.00 0.00 34.58 2.43
710 727 2.089980 GCCTACGACACAAGGACTCTA 58.910 52.381 0.00 0.00 34.58 2.43
711 728 0.889306 GCCTACGACACAAGGACTCT 59.111 55.000 0.00 0.00 34.58 3.24
712 729 0.601558 TGCCTACGACACAAGGACTC 59.398 55.000 0.00 0.00 34.58 3.36
713 730 1.267121 ATGCCTACGACACAAGGACT 58.733 50.000 0.00 0.00 34.58 3.85
714 731 2.810650 CTATGCCTACGACACAAGGAC 58.189 52.381 0.00 0.00 34.58 3.85
715 732 1.136305 GCTATGCCTACGACACAAGGA 59.864 52.381 0.00 0.00 34.58 3.36
716 733 1.134818 TGCTATGCCTACGACACAAGG 60.135 52.381 0.00 0.00 35.86 3.61
717 734 2.196749 CTGCTATGCCTACGACACAAG 58.803 52.381 0.00 0.00 0.00 3.16
718 735 1.134818 CCTGCTATGCCTACGACACAA 60.135 52.381 0.00 0.00 0.00 3.33
719 736 0.459899 CCTGCTATGCCTACGACACA 59.540 55.000 0.00 0.00 0.00 3.72
720 737 0.460311 ACCTGCTATGCCTACGACAC 59.540 55.000 0.00 0.00 0.00 3.67
721 738 0.744874 GACCTGCTATGCCTACGACA 59.255 55.000 0.00 0.00 0.00 4.35
722 739 1.001158 GAGACCTGCTATGCCTACGAC 60.001 57.143 0.00 0.00 0.00 4.34
723 740 1.319541 GAGACCTGCTATGCCTACGA 58.680 55.000 0.00 0.00 0.00 3.43
724 741 0.315568 GGAGACCTGCTATGCCTACG 59.684 60.000 0.00 0.00 0.00 3.51
725 742 1.414158 TGGAGACCTGCTATGCCTAC 58.586 55.000 0.00 0.00 0.00 3.18
726 743 2.174685 TTGGAGACCTGCTATGCCTA 57.825 50.000 0.00 0.00 0.00 3.93
727 744 1.289160 TTTGGAGACCTGCTATGCCT 58.711 50.000 0.00 0.00 0.00 4.75
728 745 2.355010 ATTTGGAGACCTGCTATGCC 57.645 50.000 0.00 0.00 0.00 4.40
729 746 3.067320 GGAAATTTGGAGACCTGCTATGC 59.933 47.826 0.00 0.00 0.00 3.14
730 747 3.313526 CGGAAATTTGGAGACCTGCTATG 59.686 47.826 0.00 0.00 0.00 2.23
731 748 3.199946 TCGGAAATTTGGAGACCTGCTAT 59.800 43.478 0.00 0.00 0.00 2.97
732 749 2.569853 TCGGAAATTTGGAGACCTGCTA 59.430 45.455 0.00 0.00 0.00 3.49
733 750 1.351017 TCGGAAATTTGGAGACCTGCT 59.649 47.619 0.00 0.00 0.00 4.24
734 751 1.740025 CTCGGAAATTTGGAGACCTGC 59.260 52.381 9.28 0.00 0.00 4.85
735 752 1.740025 GCTCGGAAATTTGGAGACCTG 59.260 52.381 16.28 0.00 0.00 4.00
736 753 1.630878 AGCTCGGAAATTTGGAGACCT 59.369 47.619 16.28 5.54 0.00 3.85
737 754 2.010497 GAGCTCGGAAATTTGGAGACC 58.990 52.381 16.28 2.19 0.00 3.85
738 755 2.010497 GGAGCTCGGAAATTTGGAGAC 58.990 52.381 16.28 10.39 0.00 3.36
739 756 1.065418 GGGAGCTCGGAAATTTGGAGA 60.065 52.381 16.28 4.06 0.00 3.71
740 757 1.383523 GGGAGCTCGGAAATTTGGAG 58.616 55.000 7.83 3.44 0.00 3.86
810 831 1.422024 AGATCTCGATCCGGGAGAGAA 59.578 52.381 21.78 10.51 40.63 2.87
841 862 2.885644 CGTTGGATCCGGACGCAG 60.886 66.667 22.38 3.17 0.00 5.18
903 943 3.418068 GTCTGCTGGAGTGCGTGC 61.418 66.667 0.00 0.00 35.36 5.34
904 944 3.108289 CGTCTGCTGGAGTGCGTG 61.108 66.667 0.00 0.00 35.36 5.34
989 1046 3.487202 CCGACATGGTTGACGCGG 61.487 66.667 12.47 0.00 39.23 6.46
990 1047 3.487202 CCCGACATGGTTGACGCG 61.487 66.667 3.53 3.53 39.23 6.01
991 1048 3.799755 GCCCGACATGGTTGACGC 61.800 66.667 0.00 0.00 39.23 5.19
1257 1316 1.154282 CTTGAGCGCGTAGACGACA 60.154 57.895 8.43 0.00 43.02 4.35
1359 1424 3.374988 ACCAACGATTCATACACATGCAG 59.625 43.478 0.00 0.00 31.73 4.41
1363 1428 4.191544 CCTCACCAACGATTCATACACAT 58.808 43.478 0.00 0.00 0.00 3.21
1369 1434 2.819608 CAAACCCTCACCAACGATTCAT 59.180 45.455 0.00 0.00 0.00 2.57
1370 1435 2.226330 CAAACCCTCACCAACGATTCA 58.774 47.619 0.00 0.00 0.00 2.57
1371 1436 1.539827 CCAAACCCTCACCAACGATTC 59.460 52.381 0.00 0.00 0.00 2.52
1405 1474 3.802866 TGCATTCATACACATCGCCTTA 58.197 40.909 0.00 0.00 0.00 2.69
1432 1501 6.995091 AGCCAAGATAATACCAACTCTGATTC 59.005 38.462 0.00 0.00 0.00 2.52
1439 1508 4.235079 TGCAGCCAAGATAATACCAACT 57.765 40.909 0.00 0.00 0.00 3.16
1473 1598 6.321717 TGGATCACAAAAGCATCGAATAAAC 58.678 36.000 0.00 0.00 0.00 2.01
1477 1602 4.012374 ACTGGATCACAAAAGCATCGAAT 58.988 39.130 0.00 0.00 0.00 3.34
1502 1627 7.889589 AAAACTGAATTAAGCAAATACAGCC 57.110 32.000 0.00 0.00 0.00 4.85
1559 1721 7.138736 ACACATTTAAATCCAGAGAACGTTTG 58.861 34.615 0.46 0.00 0.00 2.93
1572 1734 6.366061 GGCTGGTGAAGAAACACATTTAAATC 59.634 38.462 0.00 0.00 41.88 2.17
1596 1758 5.048224 AGTTTCAGAATGCAGAACAGAATGG 60.048 40.000 0.00 0.00 36.51 3.16
1600 1762 4.753610 CAGAGTTTCAGAATGCAGAACAGA 59.246 41.667 0.00 0.00 34.76 3.41
1604 1766 4.356405 TCCAGAGTTTCAGAATGCAGAA 57.644 40.909 0.00 0.00 34.76 3.02
1641 1804 2.793278 AAACCAACCGATGAAACAGC 57.207 45.000 0.00 0.00 0.00 4.40
1642 1805 6.086222 CAGATAAAACCAACCGATGAAACAG 58.914 40.000 0.00 0.00 0.00 3.16
1662 1825 5.023452 TCACCATCCACTAACTACACAGAT 58.977 41.667 0.00 0.00 0.00 2.90
1680 1843 4.099727 CCATTGCATTCATAACCATCACCA 59.900 41.667 0.00 0.00 0.00 4.17
1683 1846 6.324254 TGATTCCATTGCATTCATAACCATCA 59.676 34.615 0.00 0.00 0.00 3.07
1688 1851 6.567050 ACACTGATTCCATTGCATTCATAAC 58.433 36.000 0.00 0.00 0.00 1.89
1744 1907 4.433615 GCAAGGAGATAGAAACATGTCGA 58.566 43.478 0.00 0.00 0.00 4.20
1747 1910 3.535561 CGGCAAGGAGATAGAAACATGT 58.464 45.455 0.00 0.00 0.00 3.21
1748 1911 2.289002 GCGGCAAGGAGATAGAAACATG 59.711 50.000 0.00 0.00 0.00 3.21
1749 1912 2.171448 AGCGGCAAGGAGATAGAAACAT 59.829 45.455 1.45 0.00 0.00 2.71
1751 1914 2.317530 AGCGGCAAGGAGATAGAAAC 57.682 50.000 1.45 0.00 0.00 2.78
1752 1915 4.021368 GGTATAGCGGCAAGGAGATAGAAA 60.021 45.833 1.45 0.00 0.00 2.52
1756 1919 2.884320 TGGTATAGCGGCAAGGAGATA 58.116 47.619 1.45 0.00 0.00 1.98
1757 1920 1.717032 TGGTATAGCGGCAAGGAGAT 58.283 50.000 1.45 0.00 0.00 2.75
1759 1922 1.139058 AGTTGGTATAGCGGCAAGGAG 59.861 52.381 1.45 0.00 0.00 3.69
1760 1923 1.200519 AGTTGGTATAGCGGCAAGGA 58.799 50.000 1.45 0.00 0.00 3.36
1761 1924 1.670811 CAAGTTGGTATAGCGGCAAGG 59.329 52.381 1.45 0.00 0.00 3.61
1762 1925 2.356135 ACAAGTTGGTATAGCGGCAAG 58.644 47.619 7.96 0.00 0.00 4.01
1763 1926 2.483014 ACAAGTTGGTATAGCGGCAA 57.517 45.000 7.96 0.00 0.00 4.52
1764 1927 2.483014 AACAAGTTGGTATAGCGGCA 57.517 45.000 7.96 0.00 0.00 5.69
1765 1928 2.610833 GGTAACAAGTTGGTATAGCGGC 59.389 50.000 3.46 0.00 0.00 6.53
1766 1929 3.869246 CAGGTAACAAGTTGGTATAGCGG 59.131 47.826 3.46 2.86 41.41 5.52
1767 1930 4.751060 TCAGGTAACAAGTTGGTATAGCG 58.249 43.478 3.46 3.19 41.41 4.26
1768 1931 7.335924 TGAATTCAGGTAACAAGTTGGTATAGC 59.664 37.037 3.38 5.46 41.41 2.97
1769 1932 8.786826 TGAATTCAGGTAACAAGTTGGTATAG 57.213 34.615 3.38 0.00 41.41 1.31
1770 1933 8.786826 CTGAATTCAGGTAACAAGTTGGTATA 57.213 34.615 25.14 0.00 40.20 1.47
1771 1934 7.687941 CTGAATTCAGGTAACAAGTTGGTAT 57.312 36.000 25.14 0.00 40.20 2.73
1786 1949 6.941172 GCCGCAGCAAAGTACTGAATTCAG 62.941 50.000 29.74 29.74 43.65 3.02
1787 1950 2.483877 CCGCAGCAAAGTACTGAATTCA 59.516 45.455 8.12 8.12 37.32 2.57
1788 1951 2.729156 GCCGCAGCAAAGTACTGAATTC 60.729 50.000 0.00 0.00 37.32 2.17
1789 1952 1.200020 GCCGCAGCAAAGTACTGAATT 59.800 47.619 0.00 0.00 37.32 2.17
1790 1953 0.804989 GCCGCAGCAAAGTACTGAAT 59.195 50.000 0.00 0.00 37.32 2.57
1791 1954 2.244000 GCCGCAGCAAAGTACTGAA 58.756 52.632 0.00 0.00 37.32 3.02
1792 1955 3.966215 GCCGCAGCAAAGTACTGA 58.034 55.556 0.00 0.00 37.32 3.41
1807 1970 0.874390 TGAGTTCAGCGAACAATGCC 59.126 50.000 18.86 7.19 44.11 4.40
1810 1973 2.802816 GTCAGTGAGTTCAGCGAACAAT 59.197 45.455 18.86 4.28 44.11 2.71
1820 1983 3.545633 GAAATTGCGTGTCAGTGAGTTC 58.454 45.455 0.00 0.00 0.00 3.01
1823 1986 1.526887 ACGAAATTGCGTGTCAGTGAG 59.473 47.619 11.59 0.00 43.79 3.51
1845 2008 5.729665 GCATTCGGCAAAATATCGTATTG 57.270 39.130 0.00 0.00 43.97 1.90
1859 2022 2.514205 AATTTAGGCATGCATTCGGC 57.486 45.000 21.36 0.00 45.13 5.54
1860 2023 4.046462 CAGAAATTTAGGCATGCATTCGG 58.954 43.478 21.36 3.28 0.00 4.30
1861 2024 4.675510 ACAGAAATTTAGGCATGCATTCG 58.324 39.130 21.36 5.77 0.00 3.34
1862 2025 5.899299 AGACAGAAATTTAGGCATGCATTC 58.101 37.500 21.36 6.44 0.00 2.67
1863 2026 5.419788 TGAGACAGAAATTTAGGCATGCATT 59.580 36.000 21.36 7.62 0.00 3.56
1864 2027 4.951715 TGAGACAGAAATTTAGGCATGCAT 59.048 37.500 21.36 16.31 0.00 3.96
1865 2028 4.334552 TGAGACAGAAATTTAGGCATGCA 58.665 39.130 21.36 0.00 0.00 3.96
1866 2029 4.970662 TGAGACAGAAATTTAGGCATGC 57.029 40.909 9.90 9.90 0.00 4.06
1867 2030 8.084073 TCTTTTTGAGACAGAAATTTAGGCATG 58.916 33.333 0.00 0.00 0.00 4.06
1868 2031 8.181904 TCTTTTTGAGACAGAAATTTAGGCAT 57.818 30.769 0.00 0.00 0.00 4.40
1869 2032 7.581213 TCTTTTTGAGACAGAAATTTAGGCA 57.419 32.000 0.00 0.00 0.00 4.75
1870 2033 6.584184 GCTCTTTTTGAGACAGAAATTTAGGC 59.416 38.462 0.00 0.00 45.39 3.93
1871 2034 7.651808 TGCTCTTTTTGAGACAGAAATTTAGG 58.348 34.615 0.00 0.00 45.39 2.69
1874 2037 9.852091 GATATGCTCTTTTTGAGACAGAAATTT 57.148 29.630 0.00 0.00 45.39 1.82
1875 2038 9.017509 TGATATGCTCTTTTTGAGACAGAAATT 57.982 29.630 0.00 0.00 45.39 1.82
1876 2039 8.457261 GTGATATGCTCTTTTTGAGACAGAAAT 58.543 33.333 0.00 0.00 45.39 2.17
1877 2040 7.360353 CGTGATATGCTCTTTTTGAGACAGAAA 60.360 37.037 0.00 0.00 45.39 2.52
1878 2041 6.091305 CGTGATATGCTCTTTTTGAGACAGAA 59.909 38.462 0.00 0.00 45.39 3.02
1879 2042 5.578336 CGTGATATGCTCTTTTTGAGACAGA 59.422 40.000 0.00 0.00 45.39 3.41
1880 2043 5.726138 GCGTGATATGCTCTTTTTGAGACAG 60.726 44.000 0.00 0.00 45.39 3.51
1881 2044 4.093408 GCGTGATATGCTCTTTTTGAGACA 59.907 41.667 0.00 0.00 45.39 3.41
1882 2045 4.093408 TGCGTGATATGCTCTTTTTGAGAC 59.907 41.667 0.00 0.00 45.39 3.36
1883 2046 4.252878 TGCGTGATATGCTCTTTTTGAGA 58.747 39.130 0.00 0.00 45.39 3.27
1884 2047 4.585364 CTGCGTGATATGCTCTTTTTGAG 58.415 43.478 0.00 0.00 45.33 3.02
1885 2048 3.181507 GCTGCGTGATATGCTCTTTTTGA 60.182 43.478 0.00 0.00 0.00 2.69
1886 2049 3.103738 GCTGCGTGATATGCTCTTTTTG 58.896 45.455 0.00 0.00 0.00 2.44
1887 2050 2.223112 CGCTGCGTGATATGCTCTTTTT 60.223 45.455 14.93 0.00 0.00 1.94
1888 2051 1.328680 CGCTGCGTGATATGCTCTTTT 59.671 47.619 14.93 0.00 0.00 2.27
1889 2052 0.933097 CGCTGCGTGATATGCTCTTT 59.067 50.000 14.93 0.00 0.00 2.52
1890 2053 1.493950 GCGCTGCGTGATATGCTCTT 61.494 55.000 24.04 0.00 0.00 2.85
1891 2054 1.953138 GCGCTGCGTGATATGCTCT 60.953 57.895 24.04 0.00 0.00 4.09
1892 2055 2.548292 GCGCTGCGTGATATGCTC 59.452 61.111 24.04 0.00 0.00 4.26
1904 2067 3.782244 GTTGAGCTCCACGCGCTG 61.782 66.667 12.15 3.55 45.59 5.18
1905 2068 4.299547 TGTTGAGCTCCACGCGCT 62.300 61.111 12.15 0.00 45.59 5.92
1906 2069 4.077188 GTGTTGAGCTCCACGCGC 62.077 66.667 14.89 0.00 45.59 6.86
1907 2070 3.767230 CGTGTTGAGCTCCACGCG 61.767 66.667 31.17 31.17 46.45 6.01
1910 2073 1.598130 AAGCCGTGTTGAGCTCCAC 60.598 57.895 12.15 11.49 38.74 4.02
1911 2074 1.597854 CAAGCCGTGTTGAGCTCCA 60.598 57.895 12.15 0.00 38.74 3.86
1912 2075 2.328099 CCAAGCCGTGTTGAGCTCC 61.328 63.158 12.15 0.00 38.74 4.70
1913 2076 2.328099 CCCAAGCCGTGTTGAGCTC 61.328 63.158 6.82 6.82 38.74 4.09
1914 2077 2.281761 CCCAAGCCGTGTTGAGCT 60.282 61.111 0.00 0.00 42.40 4.09
1915 2078 3.365265 CCCCAAGCCGTGTTGAGC 61.365 66.667 0.00 0.00 0.00 4.26
1916 2079 0.609131 AATCCCCAAGCCGTGTTGAG 60.609 55.000 0.00 0.00 0.00 3.02
1917 2080 0.608035 GAATCCCCAAGCCGTGTTGA 60.608 55.000 0.00 0.00 0.00 3.18
1918 2081 1.595093 GGAATCCCCAAGCCGTGTTG 61.595 60.000 0.00 0.00 34.14 3.33
1919 2082 1.304134 GGAATCCCCAAGCCGTGTT 60.304 57.895 0.00 0.00 34.14 3.32
1920 2083 2.355115 GGAATCCCCAAGCCGTGT 59.645 61.111 0.00 0.00 34.14 4.49
1921 2084 1.750399 CTGGAATCCCCAAGCCGTG 60.750 63.158 0.00 0.00 46.07 4.94
1922 2085 2.677228 CTGGAATCCCCAAGCCGT 59.323 61.111 0.00 0.00 46.07 5.68
1923 2086 2.830370 GCTGGAATCCCCAAGCCG 60.830 66.667 0.00 0.00 46.07 5.52
1924 2087 2.054453 GTGCTGGAATCCCCAAGCC 61.054 63.158 7.51 0.00 46.07 4.35
1925 2088 2.054453 GGTGCTGGAATCCCCAAGC 61.054 63.158 3.40 3.40 46.07 4.01
1926 2089 1.380380 GGGTGCTGGAATCCCCAAG 60.380 63.158 0.00 0.00 46.07 3.61
1927 2090 2.770130 GGGTGCTGGAATCCCCAA 59.230 61.111 0.00 0.00 46.07 4.12
1928 2091 3.727258 CGGGTGCTGGAATCCCCA 61.727 66.667 0.00 0.00 44.25 4.96
1929 2092 3.282374 AACGGGTGCTGGAATCCCC 62.282 63.158 0.00 0.00 38.09 4.81
1930 2093 1.749258 GAACGGGTGCTGGAATCCC 60.749 63.158 0.00 0.00 37.98 3.85
1931 2094 0.394352 ATGAACGGGTGCTGGAATCC 60.394 55.000 0.00 0.00 0.00 3.01
1932 2095 1.133025 CAATGAACGGGTGCTGGAATC 59.867 52.381 0.00 0.00 0.00 2.52
1933 2096 1.176527 CAATGAACGGGTGCTGGAAT 58.823 50.000 0.00 0.00 0.00 3.01
1934 2097 1.523154 GCAATGAACGGGTGCTGGAA 61.523 55.000 0.00 0.00 35.36 3.53
1935 2098 1.971167 GCAATGAACGGGTGCTGGA 60.971 57.895 0.00 0.00 35.36 3.86
1936 2099 2.568090 GCAATGAACGGGTGCTGG 59.432 61.111 0.00 0.00 35.36 4.85
1937 2100 2.128853 AACGCAATGAACGGGTGCTG 62.129 55.000 0.00 0.00 36.10 4.41
1938 2101 1.452145 AAACGCAATGAACGGGTGCT 61.452 50.000 0.00 0.00 36.10 4.40
1939 2102 1.001745 GAAACGCAATGAACGGGTGC 61.002 55.000 0.00 0.00 34.87 5.01
1940 2103 0.591170 AGAAACGCAATGAACGGGTG 59.409 50.000 0.00 0.00 34.00 4.61
1941 2104 1.314730 AAGAAACGCAATGAACGGGT 58.685 45.000 0.00 0.00 34.00 5.28
1942 2105 2.415697 AAAGAAACGCAATGAACGGG 57.584 45.000 0.00 0.00 34.00 5.28
1943 2106 3.628017 AGAAAAGAAACGCAATGAACGG 58.372 40.909 0.00 0.00 34.00 4.44
1944 2107 6.911484 AATAGAAAAGAAACGCAATGAACG 57.089 33.333 0.00 0.00 0.00 3.95
1945 2108 7.169140 ACCAAATAGAAAAGAAACGCAATGAAC 59.831 33.333 0.00 0.00 0.00 3.18
1946 2109 7.206687 ACCAAATAGAAAAGAAACGCAATGAA 58.793 30.769 0.00 0.00 0.00 2.57
1947 2110 6.744112 ACCAAATAGAAAAGAAACGCAATGA 58.256 32.000 0.00 0.00 0.00 2.57
1948 2111 7.406799 AACCAAATAGAAAAGAAACGCAATG 57.593 32.000 0.00 0.00 0.00 2.82
1949 2112 9.139174 CATAACCAAATAGAAAAGAAACGCAAT 57.861 29.630 0.00 0.00 0.00 3.56
1950 2113 7.115663 GCATAACCAAATAGAAAAGAAACGCAA 59.884 33.333 0.00 0.00 0.00 4.85
1951 2114 6.584563 GCATAACCAAATAGAAAAGAAACGCA 59.415 34.615 0.00 0.00 0.00 5.24
1952 2115 6.237201 CGCATAACCAAATAGAAAAGAAACGC 60.237 38.462 0.00 0.00 0.00 4.84
1953 2116 6.237201 GCGCATAACCAAATAGAAAAGAAACG 60.237 38.462 0.30 0.00 0.00 3.60
1957 2120 4.702612 TGGCGCATAACCAAATAGAAAAGA 59.297 37.500 10.83 0.00 33.12 2.52
1976 2139 1.238439 AAGTCCAGTGAACATTGGCG 58.762 50.000 10.76 0.00 38.01 5.69
1979 2142 5.410067 ACAAACAAAGTCCAGTGAACATTG 58.590 37.500 0.00 0.00 0.00 2.82
1987 2150 5.652014 TGATGAAGAACAAACAAAGTCCAGT 59.348 36.000 0.00 0.00 0.00 4.00
1995 2158 6.757897 ACTTGACTGATGAAGAACAAACAA 57.242 33.333 0.00 0.00 0.00 2.83
1996 2159 7.047891 AGTACTTGACTGATGAAGAACAAACA 58.952 34.615 0.00 0.00 36.87 2.83
2027 2191 6.950842 TCTGACATCTCCAGTTTCATAACAT 58.049 36.000 0.00 0.00 36.70 2.71
2029 2193 7.550551 TCAATCTGACATCTCCAGTTTCATAAC 59.449 37.037 0.00 0.00 33.57 1.89
2032 2196 6.058553 TCAATCTGACATCTCCAGTTTCAT 57.941 37.500 0.00 0.00 33.57 2.57
2088 2254 1.879380 CAAGTTGGCTGAAATCGTCCA 59.121 47.619 0.00 0.00 0.00 4.02
2099 2265 5.772672 TGGACAATTGTATAACAAGTTGGCT 59.227 36.000 11.95 0.00 41.94 4.75
2101 2267 7.063308 GCAATGGACAATTGTATAACAAGTTGG 59.937 37.037 11.95 0.91 46.37 3.77
2102 2268 7.598118 TGCAATGGACAATTGTATAACAAGTTG 59.402 33.333 11.95 11.11 46.37 3.16
2107 2273 6.581171 TGTGCAATGGACAATTGTATAACA 57.419 33.333 11.95 8.94 46.37 2.41
2117 2283 1.393603 TTCGGTTGTGCAATGGACAA 58.606 45.000 16.21 16.21 0.00 3.18
2120 2286 2.028130 ACTTTTCGGTTGTGCAATGGA 58.972 42.857 0.00 0.00 0.00 3.41
2133 2299 5.396362 CACAAACATAGCAGACAACTTTTCG 59.604 40.000 0.00 0.00 0.00 3.46
2134 2300 6.197096 CACACAAACATAGCAGACAACTTTTC 59.803 38.462 0.00 0.00 0.00 2.29
2161 2327 2.108075 TCTCTTGGTCAAGGATGGCAAA 59.892 45.455 10.39 0.00 38.88 3.68
2162 2328 1.704628 TCTCTTGGTCAAGGATGGCAA 59.295 47.619 10.39 0.00 38.88 4.52
2178 2344 4.871871 TGGTTGGTCTAGATCTCTCTCT 57.128 45.455 4.28 0.00 32.66 3.10
2184 2350 5.337652 GCAGTAACTTGGTTGGTCTAGATCT 60.338 44.000 4.28 0.00 0.00 2.75
2185 2351 4.870991 GCAGTAACTTGGTTGGTCTAGATC 59.129 45.833 0.00 0.00 0.00 2.75
2186 2352 4.286032 TGCAGTAACTTGGTTGGTCTAGAT 59.714 41.667 0.00 0.00 0.00 1.98
2187 2353 3.644265 TGCAGTAACTTGGTTGGTCTAGA 59.356 43.478 0.00 0.00 0.00 2.43
2188 2354 4.002906 TGCAGTAACTTGGTTGGTCTAG 57.997 45.455 0.00 0.00 0.00 2.43
2189 2355 4.634012 ATGCAGTAACTTGGTTGGTCTA 57.366 40.909 0.00 0.00 0.00 2.59
2198 2371 1.270274 TGCCAGCAATGCAGTAACTTG 59.730 47.619 8.35 0.00 34.05 3.16
2199 2372 1.619654 TGCCAGCAATGCAGTAACTT 58.380 45.000 8.35 0.00 34.05 2.66
2200 2373 1.619654 TTGCCAGCAATGCAGTAACT 58.380 45.000 8.35 0.00 40.35 2.24
2204 2377 1.067142 CAAGATTGCCAGCAATGCAGT 60.067 47.619 21.86 0.00 45.50 4.40
2206 2379 0.970640 ACAAGATTGCCAGCAATGCA 59.029 45.000 21.86 0.00 45.50 3.96
2229 2402 1.694150 TGGCAGCTGACAAAGTACTCT 59.306 47.619 23.06 0.00 0.00 3.24
2230 2403 2.072298 CTGGCAGCTGACAAAGTACTC 58.928 52.381 25.38 0.00 29.15 2.59
2231 2404 1.417890 ACTGGCAGCTGACAAAGTACT 59.582 47.619 25.38 0.00 29.15 2.73
2232 2405 1.884235 ACTGGCAGCTGACAAAGTAC 58.116 50.000 25.38 0.00 29.15 2.73
2233 2406 2.618241 CAAACTGGCAGCTGACAAAGTA 59.382 45.455 25.38 0.00 29.15 2.24
2234 2407 1.406539 CAAACTGGCAGCTGACAAAGT 59.593 47.619 25.38 16.55 29.15 2.66
2272 2445 8.932791 AGCGGTATCAAATAAATAATTACTCGG 58.067 33.333 0.00 0.00 0.00 4.63
2273 2446 9.953825 GAGCGGTATCAAATAAATAATTACTCG 57.046 33.333 0.00 0.00 0.00 4.18
2275 2448 8.932791 CGGAGCGGTATCAAATAAATAATTACT 58.067 33.333 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.