Multiple sequence alignment - TraesCS6B01G073900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G073900 chr6B 100.000 4843 0 0 871 5713 50411117 50406275 0.000000e+00 8944.0
1 TraesCS6B01G073900 chr6B 88.649 2405 191 34 2400 4783 57417637 57419980 0.000000e+00 2854.0
2 TraesCS6B01G073900 chr6B 88.086 1259 111 19 3462 4707 56377832 56376600 0.000000e+00 1458.0
3 TraesCS6B01G073900 chr6B 87.183 1303 127 24 3368 4660 56396147 56394875 0.000000e+00 1445.0
4 TraesCS6B01G073900 chr6B 91.153 859 69 5 2403 3255 79877847 79878704 0.000000e+00 1158.0
5 TraesCS6B01G073900 chr6B 95.580 724 22 3 3358 4072 519170949 519171671 0.000000e+00 1151.0
6 TraesCS6B01G073900 chr6B 92.940 779 49 3 2478 3251 56397049 56396272 0.000000e+00 1129.0
7 TraesCS6B01G073900 chr6B 100.000 507 0 0 1 507 50411987 50411481 0.000000e+00 937.0
8 TraesCS6B01G073900 chr6B 84.178 493 50 10 1916 2388 56379511 56379027 2.430000e-123 453.0
9 TraesCS6B01G073900 chr6B 83.493 521 48 10 1916 2408 79877274 79877784 8.730000e-123 451.0
10 TraesCS6B01G073900 chr6B 82.090 469 43 14 1949 2408 57417136 57417572 4.210000e-96 363.0
11 TraesCS6B01G073900 chr6B 87.805 246 24 3 4607 4846 79880064 79880309 3.370000e-72 283.0
12 TraesCS6B01G073900 chr6B 89.140 221 20 1 1693 1913 79876555 79876771 7.290000e-69 272.0
13 TraesCS6B01G073900 chr6B 86.139 202 14 4 1722 1913 57416488 57416685 7.500000e-49 206.0
14 TraesCS6B01G073900 chr6B 81.369 263 26 9 905 1154 57736923 57736671 5.840000e-45 193.0
15 TraesCS6B01G073900 chr6B 83.182 220 12 8 1693 1891 56380143 56379928 1.640000e-40 178.0
16 TraesCS6B01G073900 chr6B 78.486 251 35 10 906 1154 57415320 57415553 4.610000e-31 147.0
17 TraesCS6B01G073900 chr6B 95.122 41 2 0 1636 1676 50410323 50410283 1.330000e-06 65.8
18 TraesCS6B01G073900 chr6B 95.122 41 2 0 1665 1705 50410352 50410312 1.330000e-06 65.8
19 TraesCS6B01G073900 chrUn 95.556 3465 77 18 1665 5078 137914156 137910718 0.000000e+00 5474.0
20 TraesCS6B01G073900 chrUn 91.502 859 66 5 2403 3255 27473527 27474384 0.000000e+00 1175.0
21 TraesCS6B01G073900 chrUn 87.150 786 49 23 871 1629 137915025 137914265 0.000000e+00 845.0
22 TraesCS6B01G073900 chrUn 84.363 518 46 8 1916 2406 27472952 27473461 5.180000e-130 475.0
23 TraesCS6B01G073900 chrUn 97.455 275 7 0 5323 5597 42712376 42712650 2.410000e-128 470.0
24 TraesCS6B01G073900 chrUn 97.455 275 7 0 5323 5597 42713764 42714038 2.410000e-128 470.0
25 TraesCS6B01G073900 chrUn 97.455 275 7 0 5323 5597 329559586 329559860 2.410000e-128 470.0
26 TraesCS6B01G073900 chrUn 97.455 275 7 0 5323 5597 329972644 329972918 2.410000e-128 470.0
27 TraesCS6B01G073900 chrUn 82.231 484 77 8 1 479 137915580 137915101 5.330000e-110 409.0
28 TraesCS6B01G073900 chrUn 89.778 225 15 3 1693 1913 27472229 27472449 1.210000e-71 281.0
29 TraesCS6B01G073900 chr6A 94.589 3567 100 34 1665 5171 45353504 45357037 0.000000e+00 5432.0
30 TraesCS6B01G073900 chr6A 88.003 2409 199 39 2400 4783 32741678 32744021 0.000000e+00 2765.0
31 TraesCS6B01G073900 chr6A 87.698 1260 117 19 3462 4707 31751849 31750614 0.000000e+00 1434.0
32 TraesCS6B01G073900 chr6A 91.735 859 65 3 2403 3255 46698896 46698038 0.000000e+00 1188.0
33 TraesCS6B01G073900 chr6A 93.041 776 36 7 871 1629 45352621 45353395 0.000000e+00 1118.0
34 TraesCS6B01G073900 chr6A 84.756 492 48 9 1916 2388 31753441 31752958 8.670000e-128 468.0
35 TraesCS6B01G073900 chr6A 81.836 512 78 13 1 507 45352069 45352570 3.180000e-112 416.0
36 TraesCS6B01G073900 chr6A 82.036 501 49 15 1916 2408 32741148 32741615 6.940000e-104 388.0
37 TraesCS6B01G073900 chr6A 90.950 221 16 1 1693 1913 46700187 46699971 1.560000e-75 294.0
38 TraesCS6B01G073900 chr6A 87.654 243 28 1 4607 4847 46696611 46696369 1.210000e-71 281.0
39 TraesCS6B01G073900 chr6A 81.768 181 12 12 1693 1868 31754022 31753858 1.290000e-26 132.0
40 TraesCS6B01G073900 chr6A 78.112 233 34 9 904 1134 32887867 32887650 1.290000e-26 132.0
41 TraesCS6B01G073900 chr6A 90.805 87 5 1 5223 5306 32744509 32744595 4.680000e-21 113.0
42 TraesCS6B01G073900 chr6D 89.254 2401 195 30 2403 4783 30097421 30095064 0.000000e+00 2946.0
43 TraesCS6B01G073900 chr6D 87.591 2337 191 54 2403 4707 31269437 31267168 0.000000e+00 2617.0
44 TraesCS6B01G073900 chr6D 85.127 1412 154 25 3462 4839 31473232 31474621 0.000000e+00 1393.0
45 TraesCS6B01G073900 chr6D 84.381 493 48 11 1916 2388 31471643 31472126 1.880000e-124 457.0
46 TraesCS6B01G073900 chr6D 84.223 431 37 11 1999 2408 31269924 31269504 1.930000e-104 390.0
47 TraesCS6B01G073900 chr6D 81.489 497 45 17 1916 2406 30097946 30097491 1.170000e-96 364.0
48 TraesCS6B01G073900 chr6D 86.139 202 14 4 1722 1913 30098586 30098389 7.500000e-49 206.0
49 TraesCS6B01G073900 chr6D 87.342 79 4 3 1087 1165 31271400 31271328 1.020000e-12 86.1
50 TraesCS6B01G073900 chr2B 95.994 724 19 3 3358 4072 96277603 96278325 0.000000e+00 1168.0
51 TraesCS6B01G073900 chr2B 91.437 327 27 1 5311 5637 651985908 651985583 1.130000e-121 448.0
52 TraesCS6B01G073900 chr2B 87.019 208 12 5 1711 1907 13183179 13183382 2.680000e-53 220.0
53 TraesCS6B01G073900 chr2B 98.261 115 2 0 5599 5713 134756499 134756385 9.710000e-48 202.0
54 TraesCS6B01G073900 chr7B 95.856 724 19 4 3358 4072 680418542 680419263 0.000000e+00 1160.0
55 TraesCS6B01G073900 chr7B 95.304 724 24 3 3358 4072 680449707 680450429 0.000000e+00 1140.0
56 TraesCS6B01G073900 chr7B 99.160 119 1 0 5595 5713 389911679 389911561 1.250000e-51 215.0
57 TraesCS6B01G073900 chr4B 95.718 724 21 3 3358 4072 614205369 614204647 0.000000e+00 1157.0
58 TraesCS6B01G073900 chr4B 92.361 144 11 0 5570 5713 531583127 531582984 7.500000e-49 206.0
59 TraesCS6B01G073900 chr3B 95.442 724 23 3 3358 4072 701122829 701122107 0.000000e+00 1146.0
60 TraesCS6B01G073900 chr3B 95.166 724 25 3 3358 4072 753065793 753066515 0.000000e+00 1134.0
61 TraesCS6B01G073900 chr3B 98.261 115 2 0 5599 5713 617334823 617334709 9.710000e-48 202.0
62 TraesCS6B01G073900 chr4D 97.473 277 7 0 5321 5597 228617568 228617844 1.860000e-129 473.0
63 TraesCS6B01G073900 chr4D 78.652 356 58 13 5372 5713 63413577 63413226 2.680000e-53 220.0
64 TraesCS6B01G073900 chr7D 95.517 290 12 1 5311 5600 154397476 154397764 4.030000e-126 462.0
65 TraesCS6B01G073900 chr7D 78.649 370 57 16 5360 5713 251629340 251629703 5.760000e-55 226.0
66 TraesCS6B01G073900 chr1D 87.958 382 46 0 5323 5704 27904714 27904333 8.730000e-123 451.0
67 TraesCS6B01G073900 chr4A 87.728 383 47 0 5320 5702 614550120 614550502 1.130000e-121 448.0
68 TraesCS6B01G073900 chr2D 89.062 256 25 2 4607 4861 48567625 48567878 1.190000e-81 315.0
69 TraesCS6B01G073900 chr2D 89.510 143 10 2 1753 1894 48563406 48563544 5.880000e-40 176.0
70 TraesCS6B01G073900 chr3D 89.032 155 15 1 5561 5713 339481709 339481555 2.100000e-44 191.0
71 TraesCS6B01G073900 chr5A 88.312 77 8 1 1693 1768 655642710 655642786 2.190000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G073900 chr6B 50406275 50411987 5712 True 2503.150000 8944 97.561000 1 5713 4 chr6B.!!$R2 5712
1 TraesCS6B01G073900 chr6B 56394875 56397049 2174 True 1287.000000 1445 90.061500 2478 4660 2 chr6B.!!$R4 2182
2 TraesCS6B01G073900 chr6B 519170949 519171671 722 False 1151.000000 1151 95.580000 3358 4072 1 chr6B.!!$F1 714
3 TraesCS6B01G073900 chr6B 57415320 57419980 4660 False 892.500000 2854 83.841000 906 4783 4 chr6B.!!$F2 3877
4 TraesCS6B01G073900 chr6B 56376600 56380143 3543 True 696.333333 1458 85.148667 1693 4707 3 chr6B.!!$R3 3014
5 TraesCS6B01G073900 chr6B 79876555 79880309 3754 False 541.000000 1158 87.897750 1693 4846 4 chr6B.!!$F3 3153
6 TraesCS6B01G073900 chrUn 137910718 137915580 4862 True 2242.666667 5474 88.312333 1 5078 3 chrUn.!!$R1 5077
7 TraesCS6B01G073900 chrUn 27472229 27474384 2155 False 643.666667 1175 88.547667 1693 3255 3 chrUn.!!$F3 1562
8 TraesCS6B01G073900 chrUn 42712376 42714038 1662 False 470.000000 470 97.455000 5323 5597 2 chrUn.!!$F4 274
9 TraesCS6B01G073900 chr6A 45352069 45357037 4968 False 2322.000000 5432 89.822000 1 5171 3 chr6A.!!$F2 5170
10 TraesCS6B01G073900 chr6A 32741148 32744595 3447 False 1088.666667 2765 86.948000 1916 5306 3 chr6A.!!$F1 3390
11 TraesCS6B01G073900 chr6A 31750614 31754022 3408 True 678.000000 1434 84.740667 1693 4707 3 chr6A.!!$R2 3014
12 TraesCS6B01G073900 chr6A 46696369 46700187 3818 True 587.666667 1188 90.113000 1693 4847 3 chr6A.!!$R3 3154
13 TraesCS6B01G073900 chr6D 30095064 30098586 3522 True 1172.000000 2946 85.627333 1722 4783 3 chr6D.!!$R1 3061
14 TraesCS6B01G073900 chr6D 31267168 31271400 4232 True 1031.033333 2617 86.385333 1087 4707 3 chr6D.!!$R2 3620
15 TraesCS6B01G073900 chr6D 31471643 31474621 2978 False 925.000000 1393 84.754000 1916 4839 2 chr6D.!!$F1 2923
16 TraesCS6B01G073900 chr2B 96277603 96278325 722 False 1168.000000 1168 95.994000 3358 4072 1 chr2B.!!$F2 714
17 TraesCS6B01G073900 chr7B 680418542 680419263 721 False 1160.000000 1160 95.856000 3358 4072 1 chr7B.!!$F1 714
18 TraesCS6B01G073900 chr7B 680449707 680450429 722 False 1140.000000 1140 95.304000 3358 4072 1 chr7B.!!$F2 714
19 TraesCS6B01G073900 chr4B 614204647 614205369 722 True 1157.000000 1157 95.718000 3358 4072 1 chr4B.!!$R2 714
20 TraesCS6B01G073900 chr3B 701122107 701122829 722 True 1146.000000 1146 95.442000 3358 4072 1 chr3B.!!$R2 714
21 TraesCS6B01G073900 chr3B 753065793 753066515 722 False 1134.000000 1134 95.166000 3358 4072 1 chr3B.!!$F1 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 337 0.034767 TGTCGTCCGATGACTACCCT 60.035 55.000 19.23 0.00 39.47 4.34 F
335 339 0.253894 TCGTCCGATGACTACCCTGA 59.746 55.000 0.00 0.00 39.47 3.86 F
1472 1985 0.251916 CGGAAGGAACAGGTATGGCA 59.748 55.000 0.00 0.00 0.00 4.92 F
1505 2040 0.392461 TTCTTAGCATCCGTGTGCCC 60.392 55.000 5.74 0.00 46.19 5.36 F
1793 2452 0.940126 CAGTGGTTGCTGACTGTCAC 59.060 55.000 6.36 5.04 38.70 3.67 F
1973 3175 1.207811 GGGGAATCTTGGGCAAATGTG 59.792 52.381 0.00 0.00 0.00 3.21 F
3253 4778 1.343465 GAGGAACACCGTCTCCTTGAA 59.657 52.381 1.03 0.00 42.34 2.69 F
3515 5077 3.000041 TGCTTAACAGTAGTTGGATGCG 59.000 45.455 0.00 0.00 38.69 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 1923 0.670546 ACGAGTTGAACATCGCAGGG 60.671 55.000 14.06 0.00 42.61 4.45 R
1973 3175 1.376037 GACCTGTGTACTGCTGCCC 60.376 63.158 0.00 0.00 0.00 5.36 R
3377 4935 1.269723 GCAAGCCTGTTTACCCAAGAC 59.730 52.381 0.00 0.00 0.00 3.01 R
3384 4942 1.616159 TCCCTTGCAAGCCTGTTTAC 58.384 50.000 21.43 0.00 0.00 2.01 R
3391 4949 1.700955 ATCATCATCCCTTGCAAGCC 58.299 50.000 21.43 0.00 0.00 4.35 R
3700 5269 2.289694 ACAGAACAGTGTGGTGCCTATC 60.290 50.000 0.00 0.00 0.00 2.08 R
4280 5901 0.039074 CGGGAGGATATGCGTCACTC 60.039 60.000 0.00 0.00 32.68 3.51 R
5310 7295 0.251297 ACCAGCCTTAGTGCATTGCA 60.251 50.000 7.38 7.38 35.60 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.824852 GGTATTTGGCTTGGGTGGAAG 59.175 52.381 0.00 0.00 0.00 3.46
33 34 0.251742 TTGGCTTGGGTGGAAGGATG 60.252 55.000 0.00 0.00 0.00 3.51
35 36 1.691219 GCTTGGGTGGAAGGATGGA 59.309 57.895 0.00 0.00 0.00 3.41
41 42 2.250008 TGGGTGGAAGGATGGAGATCTA 59.750 50.000 0.00 0.00 0.00 1.98
46 47 3.051803 TGGAAGGATGGAGATCTAGGTGT 60.052 47.826 0.00 0.00 0.00 4.16
56 57 4.261405 GGAGATCTAGGTGTCATTGAGTCG 60.261 50.000 2.14 0.00 0.00 4.18
59 60 4.174411 TCTAGGTGTCATTGAGTCGTTG 57.826 45.455 0.00 0.00 0.00 4.10
70 71 1.199327 TGAGTCGTTGTCTCATCGTCC 59.801 52.381 0.00 0.00 37.07 4.79
81 82 2.168521 TCTCATCGTCCATTGTCTTCCC 59.831 50.000 0.00 0.00 0.00 3.97
97 98 0.911769 TCCCAGGATTGTTCGCATCT 59.088 50.000 0.00 0.00 0.00 2.90
102 103 2.489329 CAGGATTGTTCGCATCTGGTTT 59.511 45.455 0.00 0.00 0.00 3.27
109 110 3.243035 TGTTCGCATCTGGTTTGAGTTTG 60.243 43.478 0.00 0.00 0.00 2.93
114 115 3.645884 CATCTGGTTTGAGTTTGCAAGG 58.354 45.455 0.00 0.00 0.00 3.61
115 116 3.011566 TCTGGTTTGAGTTTGCAAGGA 57.988 42.857 0.00 0.00 0.00 3.36
116 117 2.687935 TCTGGTTTGAGTTTGCAAGGAC 59.312 45.455 0.00 0.00 0.00 3.85
121 122 2.254546 TGAGTTTGCAAGGACGATGT 57.745 45.000 0.00 0.00 0.00 3.06
124 125 3.003275 TGAGTTTGCAAGGACGATGTTTC 59.997 43.478 0.00 0.00 0.00 2.78
133 134 3.955471 AGGACGATGTTTCATTCACCAT 58.045 40.909 0.00 0.00 0.00 3.55
140 141 5.448904 CGATGTTTCATTCACCATGTGCATA 60.449 40.000 0.00 0.00 34.06 3.14
144 145 5.565592 TTCATTCACCATGTGCATACTTC 57.434 39.130 0.00 0.00 34.06 3.01
150 151 1.449423 ATGTGCATACTTCGCGGCA 60.449 52.632 6.13 3.29 0.00 5.69
151 152 1.024046 ATGTGCATACTTCGCGGCAA 61.024 50.000 6.13 0.00 38.10 4.52
156 157 1.813896 CATACTTCGCGGCAATGTTG 58.186 50.000 6.13 0.00 0.00 3.33
191 192 7.329471 GGCAAACCAAGACTTTTTAATCTCATC 59.671 37.037 0.00 0.00 35.26 2.92
193 194 9.971922 CAAACCAAGACTTTTTAATCTCATCTT 57.028 29.630 0.00 0.00 0.00 2.40
196 197 9.225436 ACCAAGACTTTTTAATCTCATCTTCTC 57.775 33.333 0.00 0.00 0.00 2.87
197 198 9.224267 CCAAGACTTTTTAATCTCATCTTCTCA 57.776 33.333 0.00 0.00 0.00 3.27
207 209 9.745018 TTAATCTCATCTTCTCATTTTCTTGGT 57.255 29.630 0.00 0.00 0.00 3.67
213 215 7.503566 TCATCTTCTCATTTTCTTGGTTCTTGT 59.496 33.333 0.00 0.00 0.00 3.16
214 216 7.031226 TCTTCTCATTTTCTTGGTTCTTGTG 57.969 36.000 0.00 0.00 0.00 3.33
220 222 6.534793 TCATTTTCTTGGTTCTTGTGCTTTTC 59.465 34.615 0.00 0.00 0.00 2.29
230 232 3.003275 TCTTGTGCTTTTCTTTGGTAGCG 59.997 43.478 0.00 0.00 36.43 4.26
235 237 2.471370 GCTTTTCTTTGGTAGCGTTTGC 59.529 45.455 0.00 0.00 43.24 3.68
251 253 3.119637 CGTTTGCTAATGTTAACCCCTGG 60.120 47.826 2.48 0.00 0.00 4.45
260 262 2.175035 TTAACCCCTGGTCTTCGCGG 62.175 60.000 6.13 0.00 33.12 6.46
268 270 4.072088 GTCTTCGCGGTGCCAACG 62.072 66.667 6.13 0.00 0.00 4.10
269 271 4.287781 TCTTCGCGGTGCCAACGA 62.288 61.111 6.20 0.00 0.00 3.85
285 289 1.219124 CGAGGGCTCTGCTTGCTAA 59.781 57.895 0.00 0.00 0.00 3.09
309 313 5.841810 TGACAGATTGGATTTTGTTCAACC 58.158 37.500 0.00 0.00 0.00 3.77
310 314 5.362143 TGACAGATTGGATTTTGTTCAACCA 59.638 36.000 0.00 0.00 0.00 3.67
312 316 6.282930 ACAGATTGGATTTTGTTCAACCAAG 58.717 36.000 0.00 0.00 42.53 3.61
314 318 5.366477 AGATTGGATTTTGTTCAACCAAGGT 59.634 36.000 0.00 0.00 42.53 3.50
326 330 1.183030 ACCAAGGTGTCGTCCGATGA 61.183 55.000 0.00 0.00 0.00 2.92
330 334 1.093159 AGGTGTCGTCCGATGACTAC 58.907 55.000 19.23 15.02 39.47 2.73
331 335 0.100146 GGTGTCGTCCGATGACTACC 59.900 60.000 19.23 18.83 39.47 3.18
333 337 0.034767 TGTCGTCCGATGACTACCCT 60.035 55.000 19.23 0.00 39.47 4.34
335 339 0.253894 TCGTCCGATGACTACCCTGA 59.746 55.000 0.00 0.00 39.47 3.86
336 340 1.133884 TCGTCCGATGACTACCCTGAT 60.134 52.381 0.00 0.00 39.47 2.90
337 341 1.001268 CGTCCGATGACTACCCTGATG 60.001 57.143 0.00 0.00 39.47 3.07
342 346 2.544694 CGATGACTACCCTGATGCTCAC 60.545 54.545 0.00 0.00 0.00 3.51
343 347 1.937191 TGACTACCCTGATGCTCACA 58.063 50.000 0.00 0.00 0.00 3.58
347 351 3.639094 GACTACCCTGATGCTCACATAGT 59.361 47.826 0.00 0.00 36.35 2.12
348 352 2.996249 ACCCTGATGCTCACATAGTG 57.004 50.000 0.00 0.00 36.35 2.74
349 353 2.191400 ACCCTGATGCTCACATAGTGT 58.809 47.619 0.00 0.00 36.35 3.55
364 368 6.510536 CACATAGTGTGCAGATCTAGATGAA 58.489 40.000 10.74 0.00 41.89 2.57
365 369 6.982724 CACATAGTGTGCAGATCTAGATGAAA 59.017 38.462 10.74 0.00 41.89 2.69
366 370 6.983307 ACATAGTGTGCAGATCTAGATGAAAC 59.017 38.462 10.74 3.94 0.00 2.78
367 371 4.764172 AGTGTGCAGATCTAGATGAAACC 58.236 43.478 10.74 0.00 0.00 3.27
405 409 5.487488 ACTTGACATGTATCCTACCCTTTGA 59.513 40.000 0.00 0.00 0.00 2.69
419 423 1.271379 CCTTTGACGGTGGATTGGTCT 60.271 52.381 0.00 0.00 0.00 3.85
479 491 1.766494 TGGGCTGTATCTGCAAATGG 58.234 50.000 0.00 0.00 0.00 3.16
480 492 1.284491 TGGGCTGTATCTGCAAATGGA 59.716 47.619 0.00 0.00 0.00 3.41
481 493 1.952296 GGGCTGTATCTGCAAATGGAG 59.048 52.381 0.00 0.00 34.56 3.86
483 495 2.295885 GCTGTATCTGCAAATGGAGCT 58.704 47.619 0.00 0.00 33.17 4.09
484 496 2.033049 GCTGTATCTGCAAATGGAGCTG 59.967 50.000 0.00 0.00 33.17 4.24
485 497 3.276857 CTGTATCTGCAAATGGAGCTGT 58.723 45.455 0.00 0.00 33.17 4.40
486 498 3.011818 TGTATCTGCAAATGGAGCTGTG 58.988 45.455 0.00 0.00 33.17 3.66
487 499 2.211250 ATCTGCAAATGGAGCTGTGT 57.789 45.000 0.00 0.00 33.17 3.72
488 500 1.241165 TCTGCAAATGGAGCTGTGTG 58.759 50.000 0.00 0.00 33.17 3.82
489 501 0.388134 CTGCAAATGGAGCTGTGTGC 60.388 55.000 0.00 0.00 43.29 4.57
490 502 1.080298 GCAAATGGAGCTGTGTGCC 60.080 57.895 0.00 0.00 44.23 5.01
491 503 1.530013 GCAAATGGAGCTGTGTGCCT 61.530 55.000 0.00 0.00 44.23 4.75
971 984 2.033448 AGTCCGCGGAATTGCCAA 59.967 55.556 32.93 0.83 35.94 4.52
974 987 3.746889 CCGCGGAATTGCCAAGCA 61.747 61.111 24.07 0.00 36.47 3.91
1023 1059 4.452733 CCGTCCGGTTCAGGAGCC 62.453 72.222 0.00 0.00 41.68 4.70
1065 1101 2.203437 AACCAAGAACCGGCCCAC 60.203 61.111 0.00 0.00 0.00 4.61
1079 1121 4.722700 CCACGGGGGCTCCAACTG 62.723 72.222 4.16 0.00 34.36 3.16
1387 1858 3.015293 CTTGCGATGCTGCGACGTT 62.015 57.895 16.54 0.00 37.81 3.99
1402 1915 2.437343 CGTTCTCGTGGCGCTTCTC 61.437 63.158 7.64 0.00 0.00 2.87
1410 1923 1.291132 GTGGCGCTTCTCTGTATTCC 58.709 55.000 7.64 0.00 0.00 3.01
1472 1985 0.251916 CGGAAGGAACAGGTATGGCA 59.748 55.000 0.00 0.00 0.00 4.92
1505 2040 0.392461 TTCTTAGCATCCGTGTGCCC 60.392 55.000 5.74 0.00 46.19 5.36
1522 2057 1.739067 CCCATCTTTCTGTTCGGGAC 58.261 55.000 0.00 0.00 35.57 4.46
1553 2088 3.449018 GGAACTGTGATCTCTAAGCCTGA 59.551 47.826 0.00 0.00 0.00 3.86
1554 2089 4.429108 GAACTGTGATCTCTAAGCCTGAC 58.571 47.826 0.00 0.00 0.00 3.51
1614 2153 3.117322 TGGAATCTTGGGGACAGTTTGAA 60.117 43.478 0.00 0.00 44.54 2.69
1623 2162 4.010349 GGGGACAGTTTGAAGATTAGGTG 58.990 47.826 0.00 0.00 0.00 4.00
1634 2275 3.087370 AGATTAGGTGTTTTCCAGGCC 57.913 47.619 0.00 0.00 0.00 5.19
1643 2284 2.562298 TGTTTTCCAGGCCTGCTAATTG 59.438 45.455 28.39 12.73 0.00 2.32
1657 2298 7.201857 GGCCTGCTAATTGATTATCTTGTTCTT 60.202 37.037 0.00 0.00 0.00 2.52
1658 2299 7.646922 GCCTGCTAATTGATTATCTTGTTCTTG 59.353 37.037 0.00 0.00 0.00 3.02
1659 2300 8.680903 CCTGCTAATTGATTATCTTGTTCTTGT 58.319 33.333 0.00 0.00 0.00 3.16
1665 2306 9.903682 AATTGATTATCTTGTTCTTGTTCAGTG 57.096 29.630 0.00 0.00 0.00 3.66
1666 2307 6.902341 TGATTATCTTGTTCTTGTTCAGTGC 58.098 36.000 0.00 0.00 0.00 4.40
1667 2308 6.712095 TGATTATCTTGTTCTTGTTCAGTGCT 59.288 34.615 0.00 0.00 0.00 4.40
1668 2309 4.825546 ATCTTGTTCTTGTTCAGTGCTG 57.174 40.909 0.00 0.00 0.00 4.41
1669 2310 3.872696 TCTTGTTCTTGTTCAGTGCTGA 58.127 40.909 0.00 0.00 37.91 4.26
1670 2311 4.454678 TCTTGTTCTTGTTCAGTGCTGAT 58.545 39.130 2.47 0.00 39.64 2.90
1671 2312 4.883585 TCTTGTTCTTGTTCAGTGCTGATT 59.116 37.500 2.47 0.00 39.64 2.57
1672 2313 4.556942 TGTTCTTGTTCAGTGCTGATTG 57.443 40.909 2.47 0.00 39.64 2.67
1673 2314 4.198530 TGTTCTTGTTCAGTGCTGATTGA 58.801 39.130 2.47 0.00 39.64 2.57
1674 2315 4.823442 TGTTCTTGTTCAGTGCTGATTGAT 59.177 37.500 2.47 0.00 39.64 2.57
1675 2316 5.300034 TGTTCTTGTTCAGTGCTGATTGATT 59.700 36.000 2.47 0.00 39.64 2.57
1676 2317 6.486320 TGTTCTTGTTCAGTGCTGATTGATTA 59.514 34.615 2.47 0.00 39.64 1.75
1677 2318 7.175467 TGTTCTTGTTCAGTGCTGATTGATTAT 59.825 33.333 2.47 0.00 39.64 1.28
1678 2319 7.312657 TCTTGTTCAGTGCTGATTGATTATC 57.687 36.000 2.47 0.00 39.64 1.75
1679 2320 7.108194 TCTTGTTCAGTGCTGATTGATTATCT 58.892 34.615 2.47 0.00 39.64 1.98
1680 2321 7.609146 TCTTGTTCAGTGCTGATTGATTATCTT 59.391 33.333 2.47 0.00 39.64 2.40
1681 2322 7.080353 TGTTCAGTGCTGATTGATTATCTTG 57.920 36.000 2.47 0.00 39.64 3.02
1682 2323 6.656270 TGTTCAGTGCTGATTGATTATCTTGT 59.344 34.615 2.47 0.00 39.64 3.16
1683 2324 7.175467 TGTTCAGTGCTGATTGATTATCTTGTT 59.825 33.333 2.47 0.00 39.64 2.83
1684 2325 7.312657 TCAGTGCTGATTGATTATCTTGTTC 57.687 36.000 0.00 0.00 34.14 3.18
1685 2326 7.108194 TCAGTGCTGATTGATTATCTTGTTCT 58.892 34.615 0.00 0.00 34.14 3.01
1709 2350 6.500684 TGTTCAGTGCTAATTGATTCTTCC 57.499 37.500 0.00 0.00 0.00 3.46
1713 2354 7.325660 TCAGTGCTAATTGATTCTTCCATTC 57.674 36.000 0.00 0.00 0.00 2.67
1720 2366 3.838244 TGATTCTTCCATTCGGTAGGG 57.162 47.619 0.00 0.00 30.77 3.53
1793 2452 0.940126 CAGTGGTTGCTGACTGTCAC 59.060 55.000 6.36 5.04 38.70 3.67
1914 3113 8.684973 ACTTAACTTGACGTACATTATCTGAC 57.315 34.615 0.00 0.00 0.00 3.51
1973 3175 1.207811 GGGGAATCTTGGGCAAATGTG 59.792 52.381 0.00 0.00 0.00 3.21
2155 3445 6.526674 CCTTTATTTGTAAACGGATGCTGTTC 59.473 38.462 0.00 0.00 31.05 3.18
2245 3541 4.961435 TGCTATTGACATGCAAAATCGA 57.039 36.364 6.65 0.00 40.48 3.59
2466 3848 3.788227 TTGTAAGACTGGCAGGATGTT 57.212 42.857 20.34 6.10 39.31 2.71
2476 3858 4.019174 CTGGCAGGATGTTTGGTCTTTAT 58.981 43.478 6.61 0.00 39.31 1.40
2516 3901 8.703604 TTTCCTGTCAAATAGATTCGTAGAAG 57.296 34.615 0.00 0.00 45.90 2.85
2519 3904 7.556635 TCCTGTCAAATAGATTCGTAGAAGAGA 59.443 37.037 0.00 0.00 45.90 3.10
2525 3910 4.394439 AGATTCGTAGAAGAGAAAGGGC 57.606 45.455 0.00 0.00 45.90 5.19
3005 4524 3.072915 ACACATCCCATCACTGAAGTCAA 59.927 43.478 0.00 0.00 0.00 3.18
3253 4778 1.343465 GAGGAACACCGTCTCCTTGAA 59.657 52.381 1.03 0.00 42.34 2.69
3377 4935 4.188462 TCGCCTTGTCCATAACTGTTATG 58.812 43.478 26.25 26.25 42.06 1.90
3384 4942 5.496556 TGTCCATAACTGTTATGTCTTGGG 58.503 41.667 28.98 18.00 41.08 4.12
3391 4949 6.877611 AACTGTTATGTCTTGGGTAAACAG 57.122 37.500 10.55 10.55 45.76 3.16
3515 5077 3.000041 TGCTTAACAGTAGTTGGATGCG 59.000 45.455 0.00 0.00 38.69 4.73
3692 5261 4.943093 TGTAACAGTGCGTACCTACTGATA 59.057 41.667 23.46 16.14 45.46 2.15
3693 5262 5.591472 TGTAACAGTGCGTACCTACTGATAT 59.409 40.000 23.46 14.38 45.46 1.63
3700 5269 7.116376 CAGTGCGTACCTACTGATATTTATTGG 59.884 40.741 15.53 0.00 45.46 3.16
4005 5616 5.535783 TGCAATTCCATCATAGTATTGTGGG 59.464 40.000 9.59 0.00 0.00 4.61
4114 5735 3.023832 ACAGTGAGAAAAACACCCTTGG 58.976 45.455 0.00 0.00 38.82 3.61
4271 5892 4.706962 GGGCTCAGTGGAAATTACAATCTT 59.293 41.667 0.00 0.00 0.00 2.40
4272 5893 5.163612 GGGCTCAGTGGAAATTACAATCTTC 60.164 44.000 0.00 0.00 0.00 2.87
4273 5894 5.649831 GGCTCAGTGGAAATTACAATCTTCT 59.350 40.000 0.00 0.00 0.00 2.85
4280 5901 9.388506 AGTGGAAATTACAATCTTCTAGATGTG 57.611 33.333 6.92 1.81 34.65 3.21
4637 6414 3.006752 GTCATCAGGCTTCCCAGATAGAG 59.993 52.174 0.00 0.00 35.38 2.43
4822 6669 2.764010 TGGGGTAGGCATAGCATATACG 59.236 50.000 10.03 0.00 0.00 3.06
4856 6736 5.189736 TCTTCTTCTGTTGGCTGGTATACAT 59.810 40.000 5.01 0.00 0.00 2.29
4861 6741 4.941263 TCTGTTGGCTGGTATACATTGAAC 59.059 41.667 5.01 1.82 0.00 3.18
4862 6742 4.917385 TGTTGGCTGGTATACATTGAACT 58.083 39.130 5.01 0.00 0.00 3.01
4864 6744 5.182950 TGTTGGCTGGTATACATTGAACTTG 59.817 40.000 5.01 0.00 0.00 3.16
4870 6770 6.093495 GCTGGTATACATTGAACTTGTTGCTA 59.907 38.462 5.01 0.00 0.00 3.49
4878 6778 7.370383 ACATTGAACTTGTTGCTACTAATTGG 58.630 34.615 0.00 0.00 0.00 3.16
4930 6836 5.094134 GCAGAGATTCAACAGATTTTGCTC 58.906 41.667 0.00 0.00 0.00 4.26
5007 6914 4.706962 AGCACTTTCTTTCTTTCTGTTGGT 59.293 37.500 0.00 0.00 0.00 3.67
5012 6919 4.836125 TCTTTCTTTCTGTTGGTGCATC 57.164 40.909 0.00 0.00 0.00 3.91
5059 6966 3.003689 CGACATTCTTTCTTGTGTTGGCT 59.996 43.478 0.00 0.00 0.00 4.75
5082 6989 5.700402 AAGAAAGGATACATACTGCTGGT 57.300 39.130 0.00 0.00 41.41 4.00
5095 7011 1.259142 TGCTGGTGCCATTGGATTGG 61.259 55.000 6.95 0.00 39.94 3.16
5114 7030 6.714810 GGATTGGTCAGTTTGGCATATATACA 59.285 38.462 0.00 0.00 0.00 2.29
5115 7031 7.230510 GGATTGGTCAGTTTGGCATATATACAA 59.769 37.037 0.00 0.00 0.00 2.41
5116 7032 7.566760 TTGGTCAGTTTGGCATATATACAAG 57.433 36.000 0.00 0.00 0.00 3.16
5117 7033 6.061441 TGGTCAGTTTGGCATATATACAAGG 58.939 40.000 0.00 0.00 0.00 3.61
5118 7034 6.126623 TGGTCAGTTTGGCATATATACAAGGA 60.127 38.462 0.00 1.70 0.00 3.36
5119 7035 6.770785 GGTCAGTTTGGCATATATACAAGGAA 59.229 38.462 0.00 0.00 0.00 3.36
5120 7036 7.041098 GGTCAGTTTGGCATATATACAAGGAAG 60.041 40.741 0.00 0.00 0.00 3.46
5121 7037 7.715249 GTCAGTTTGGCATATATACAAGGAAGA 59.285 37.037 0.00 0.24 0.00 2.87
5122 7038 8.271458 TCAGTTTGGCATATATACAAGGAAGAA 58.729 33.333 0.00 0.00 0.00 2.52
5123 7039 8.902806 CAGTTTGGCATATATACAAGGAAGAAA 58.097 33.333 0.00 0.00 0.00 2.52
5124 7040 9.474313 AGTTTGGCATATATACAAGGAAGAAAA 57.526 29.630 0.00 0.00 0.00 2.29
5178 7160 1.417517 TCATATGTGCTGGCTACCCTG 59.582 52.381 1.90 0.00 0.00 4.45
5187 7169 3.320359 GCTACCCTGCCTTGCCTA 58.680 61.111 0.00 0.00 0.00 3.93
5189 7171 1.056660 GCTACCCTGCCTTGCCTATA 58.943 55.000 0.00 0.00 0.00 1.31
5190 7172 1.630878 GCTACCCTGCCTTGCCTATAT 59.369 52.381 0.00 0.00 0.00 0.86
5193 7175 2.352371 ACCCTGCCTTGCCTATATCAT 58.648 47.619 0.00 0.00 0.00 2.45
5194 7176 2.718609 ACCCTGCCTTGCCTATATCATT 59.281 45.455 0.00 0.00 0.00 2.57
5196 7178 4.018960 ACCCTGCCTTGCCTATATCATTAG 60.019 45.833 0.00 0.00 0.00 1.73
5199 7181 6.006449 CCTGCCTTGCCTATATCATTAGTTT 58.994 40.000 0.00 0.00 0.00 2.66
5200 7182 6.072286 CCTGCCTTGCCTATATCATTAGTTTG 60.072 42.308 0.00 0.00 0.00 2.93
5201 7183 6.364701 TGCCTTGCCTATATCATTAGTTTGT 58.635 36.000 0.00 0.00 0.00 2.83
5202 7184 7.513856 TGCCTTGCCTATATCATTAGTTTGTA 58.486 34.615 0.00 0.00 0.00 2.41
5203 7185 8.163408 TGCCTTGCCTATATCATTAGTTTGTAT 58.837 33.333 0.00 0.00 0.00 2.29
5204 7186 9.667107 GCCTTGCCTATATCATTAGTTTGTATA 57.333 33.333 0.00 0.00 0.00 1.47
5256 7238 8.778059 TCCAAGAATTTACTCATATTACCCTGT 58.222 33.333 0.00 0.00 0.00 4.00
5261 7243 5.546621 TTACTCATATTACCCTGTCTGCC 57.453 43.478 0.00 0.00 0.00 4.85
5271 7253 0.250640 CCTGTCTGCCTCTGCTTGTT 60.251 55.000 0.00 0.00 38.71 2.83
5294 7279 3.554934 AGCTGTTTGAATCACAACCTGA 58.445 40.909 0.00 0.00 38.29 3.86
5312 7297 4.745649 CCTGACTGGTACTACTACTTTGC 58.254 47.826 0.00 0.00 0.00 3.68
5313 7298 4.219944 CCTGACTGGTACTACTACTTTGCA 59.780 45.833 0.00 0.00 0.00 4.08
5314 7299 5.279306 CCTGACTGGTACTACTACTTTGCAA 60.279 44.000 0.00 0.00 0.00 4.08
5315 7300 6.354794 TGACTGGTACTACTACTTTGCAAT 57.645 37.500 0.00 0.00 0.00 3.56
5316 7301 6.163476 TGACTGGTACTACTACTTTGCAATG 58.837 40.000 10.58 10.58 0.00 2.82
5317 7302 4.935808 ACTGGTACTACTACTTTGCAATGC 59.064 41.667 11.96 0.00 0.00 3.56
5318 7303 4.900684 TGGTACTACTACTTTGCAATGCA 58.099 39.130 2.72 2.72 36.47 3.96
5319 7304 4.693566 TGGTACTACTACTTTGCAATGCAC 59.306 41.667 7.72 0.00 38.71 4.57
5320 7305 4.935808 GGTACTACTACTTTGCAATGCACT 59.064 41.667 7.72 0.00 38.71 4.40
5321 7306 6.103997 GGTACTACTACTTTGCAATGCACTA 58.896 40.000 7.72 0.00 38.71 2.74
5359 7344 4.383770 GGGCAGGAACATAAGCTAGTAACA 60.384 45.833 0.00 0.00 0.00 2.41
5449 7434 9.197694 GCAGCGATGTATTTATTAGGATATAGG 57.802 37.037 1.22 0.00 0.00 2.57
5480 7465 2.437651 TCTTGGAGTGTGTGATGTTCCA 59.562 45.455 0.00 0.00 36.21 3.53
5591 7576 0.773644 AGTTCCTGCCCATTGTGACT 59.226 50.000 0.00 0.00 0.00 3.41
5597 7582 1.486310 CTGCCCATTGTGACTAGCCTA 59.514 52.381 0.00 0.00 0.00 3.93
5599 7584 2.092968 TGCCCATTGTGACTAGCCTAAG 60.093 50.000 0.00 0.00 0.00 2.18
5615 8773 2.609747 CTAAGGCTAGCCATAGTGGGA 58.390 52.381 34.70 6.62 38.19 4.37
5625 8863 3.967987 AGCCATAGTGGGAGTAACTTAGG 59.032 47.826 0.00 0.00 38.19 2.69
5630 8868 7.293073 CCATAGTGGGAGTAACTTAGGTAGTA 58.707 42.308 0.00 0.00 32.28 1.82
5633 8871 6.555711 AGTGGGAGTAACTTAGGTAGTAACA 58.444 40.000 0.00 0.00 35.54 2.41
5634 8872 7.187676 AGTGGGAGTAACTTAGGTAGTAACAT 58.812 38.462 0.00 0.00 35.54 2.71
5635 8873 8.339247 AGTGGGAGTAACTTAGGTAGTAACATA 58.661 37.037 0.00 0.00 35.54 2.29
5637 8875 8.971073 TGGGAGTAACTTAGGTAGTAACATAAC 58.029 37.037 0.00 0.00 35.54 1.89
5638 8876 8.971073 GGGAGTAACTTAGGTAGTAACATAACA 58.029 37.037 0.00 0.00 35.54 2.41
5645 8883 7.400915 ACTTAGGTAGTAACATAACACATCCCA 59.599 37.037 0.00 0.00 34.56 4.37
5646 8884 6.630203 AGGTAGTAACATAACACATCCCAA 57.370 37.500 0.00 0.00 0.00 4.12
5647 8885 6.650120 AGGTAGTAACATAACACATCCCAAG 58.350 40.000 0.00 0.00 0.00 3.61
5648 8886 6.442564 AGGTAGTAACATAACACATCCCAAGA 59.557 38.462 0.00 0.00 0.00 3.02
5649 8887 7.037873 AGGTAGTAACATAACACATCCCAAGAA 60.038 37.037 0.00 0.00 0.00 2.52
5653 8891 7.888021 AGTAACATAACACATCCCAAGAATCAA 59.112 33.333 0.00 0.00 0.00 2.57
5655 8893 7.722949 ACATAACACATCCCAAGAATCAATT 57.277 32.000 0.00 0.00 0.00 2.32
5656 8894 7.549839 ACATAACACATCCCAAGAATCAATTG 58.450 34.615 0.00 0.00 0.00 2.32
5657 8895 4.460948 ACACATCCCAAGAATCAATTGC 57.539 40.909 0.00 0.00 0.00 3.56
5659 8897 4.529377 ACACATCCCAAGAATCAATTGCTT 59.471 37.500 0.00 0.00 0.00 3.91
5660 8898 5.107133 CACATCCCAAGAATCAATTGCTTC 58.893 41.667 13.00 13.00 0.00 3.86
5661 8899 5.021458 ACATCCCAAGAATCAATTGCTTCT 58.979 37.500 16.84 16.84 32.49 2.85
5662 8900 5.105473 ACATCCCAAGAATCAATTGCTTCTG 60.105 40.000 21.78 15.82 31.66 3.02
5663 8901 4.410099 TCCCAAGAATCAATTGCTTCTGT 58.590 39.130 21.78 11.39 31.66 3.41
5664 8902 4.219070 TCCCAAGAATCAATTGCTTCTGTG 59.781 41.667 21.78 19.37 31.66 3.66
5665 8903 4.491676 CCAAGAATCAATTGCTTCTGTGG 58.508 43.478 21.78 22.79 31.66 4.17
5666 8904 3.863142 AGAATCAATTGCTTCTGTGGC 57.137 42.857 20.73 0.00 30.26 5.01
5667 8905 3.159472 AGAATCAATTGCTTCTGTGGCA 58.841 40.909 20.73 0.00 37.97 4.92
5668 8906 3.767673 AGAATCAATTGCTTCTGTGGCAT 59.232 39.130 20.73 0.00 39.54 4.40
5669 8907 3.520290 ATCAATTGCTTCTGTGGCATG 57.480 42.857 0.00 0.00 39.54 4.06
5670 8908 1.546923 TCAATTGCTTCTGTGGCATGG 59.453 47.619 0.00 0.00 39.54 3.66
5673 8911 0.111061 TTGCTTCTGTGGCATGGAGT 59.889 50.000 0.00 0.00 39.54 3.85
5674 8912 0.111061 TGCTTCTGTGGCATGGAGTT 59.889 50.000 0.00 0.00 34.56 3.01
5677 8915 3.019564 GCTTCTGTGGCATGGAGTTAAT 58.980 45.455 0.00 0.00 0.00 1.40
5678 8916 3.181493 GCTTCTGTGGCATGGAGTTAATG 60.181 47.826 0.00 0.00 0.00 1.90
5679 8917 3.998913 TCTGTGGCATGGAGTTAATGA 57.001 42.857 0.00 0.00 0.00 2.57
5681 8919 2.947652 CTGTGGCATGGAGTTAATGAGG 59.052 50.000 0.00 0.00 0.00 3.86
5683 8921 3.010027 TGTGGCATGGAGTTAATGAGGAA 59.990 43.478 0.00 0.00 0.00 3.36
5684 8922 4.016444 GTGGCATGGAGTTAATGAGGAAA 58.984 43.478 0.00 0.00 0.00 3.13
5686 8924 4.018506 TGGCATGGAGTTAATGAGGAAAGA 60.019 41.667 0.00 0.00 0.00 2.52
5687 8925 4.578105 GGCATGGAGTTAATGAGGAAAGAG 59.422 45.833 0.00 0.00 0.00 2.85
5688 8926 5.431765 GCATGGAGTTAATGAGGAAAGAGA 58.568 41.667 0.00 0.00 0.00 3.10
5691 8929 5.431765 TGGAGTTAATGAGGAAAGAGATGC 58.568 41.667 0.00 0.00 0.00 3.91
5692 8930 5.190528 TGGAGTTAATGAGGAAAGAGATGCT 59.809 40.000 0.00 0.00 0.00 3.79
5695 8933 6.479884 AGTTAATGAGGAAAGAGATGCTTGT 58.520 36.000 0.00 0.00 36.80 3.16
5696 8934 6.373774 AGTTAATGAGGAAAGAGATGCTTGTG 59.626 38.462 0.00 0.00 36.80 3.33
5699 8937 3.582647 TGAGGAAAGAGATGCTTGTGGTA 59.417 43.478 0.00 0.00 36.80 3.25
5702 8940 4.072131 GGAAAGAGATGCTTGTGGTAACA 58.928 43.478 0.00 0.00 40.32 2.41
5703 8941 4.702131 GGAAAGAGATGCTTGTGGTAACAT 59.298 41.667 0.00 0.00 42.99 2.71
5704 8942 5.880332 GGAAAGAGATGCTTGTGGTAACATA 59.120 40.000 0.00 0.00 42.99 2.29
5705 8943 6.374333 GGAAAGAGATGCTTGTGGTAACATAA 59.626 38.462 0.00 0.00 46.24 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.322997 TCCACCCAAGCCAAATACCG 60.323 55.000 0.00 0.00 0.00 4.02
13 14 0.486879 ATCCTTCCACCCAAGCCAAA 59.513 50.000 0.00 0.00 0.00 3.28
29 30 4.590647 TCAATGACACCTAGATCTCCATCC 59.409 45.833 0.00 0.00 0.00 3.51
33 34 4.261405 CGACTCAATGACACCTAGATCTCC 60.261 50.000 0.00 0.00 0.00 3.71
35 36 4.274147 ACGACTCAATGACACCTAGATCT 58.726 43.478 0.00 0.00 0.00 2.75
41 42 2.365617 AGACAACGACTCAATGACACCT 59.634 45.455 0.00 0.00 0.00 4.00
46 47 3.057526 ACGATGAGACAACGACTCAATGA 60.058 43.478 8.23 0.00 45.44 2.57
56 57 3.589988 AGACAATGGACGATGAGACAAC 58.410 45.455 0.00 0.00 0.00 3.32
59 60 3.190874 GGAAGACAATGGACGATGAGAC 58.809 50.000 0.00 0.00 0.00 3.36
70 71 3.127548 CGAACAATCCTGGGAAGACAATG 59.872 47.826 0.00 0.00 0.00 2.82
81 82 1.742761 ACCAGATGCGAACAATCCTG 58.257 50.000 0.00 0.00 0.00 3.86
97 98 1.403679 CGTCCTTGCAAACTCAAACCA 59.596 47.619 0.00 0.00 0.00 3.67
102 103 2.254546 ACATCGTCCTTGCAAACTCA 57.745 45.000 0.00 0.00 0.00 3.41
109 110 3.492313 GTGAATGAAACATCGTCCTTGC 58.508 45.455 0.00 0.00 0.00 4.01
114 115 4.406069 CACATGGTGAATGAAACATCGTC 58.594 43.478 0.00 0.00 38.72 4.20
115 116 3.366273 GCACATGGTGAATGAAACATCGT 60.366 43.478 0.00 0.00 38.72 3.73
116 117 3.173599 GCACATGGTGAATGAAACATCG 58.826 45.455 0.00 0.00 38.72 3.84
121 122 5.391843 CGAAGTATGCACATGGTGAATGAAA 60.392 40.000 0.00 0.00 38.72 2.69
124 125 3.789791 GCGAAGTATGCACATGGTGAATG 60.790 47.826 0.00 0.00 42.48 2.67
133 134 1.024046 ATTGCCGCGAAGTATGCACA 61.024 50.000 8.23 0.00 32.63 4.57
164 165 6.097554 TGAGATTAAAAAGTCTTGGTTTGCCA 59.902 34.615 0.00 0.00 44.38 4.92
181 182 9.745018 ACCAAGAAAATGAGAAGATGAGATTAA 57.255 29.630 0.00 0.00 0.00 1.40
191 192 5.689068 GCACAAGAACCAAGAAAATGAGAAG 59.311 40.000 0.00 0.00 0.00 2.85
193 194 4.889409 AGCACAAGAACCAAGAAAATGAGA 59.111 37.500 0.00 0.00 0.00 3.27
194 195 5.192327 AGCACAAGAACCAAGAAAATGAG 57.808 39.130 0.00 0.00 0.00 2.90
196 197 6.536224 AGAAAAGCACAAGAACCAAGAAAATG 59.464 34.615 0.00 0.00 0.00 2.32
197 198 6.643388 AGAAAAGCACAAGAACCAAGAAAAT 58.357 32.000 0.00 0.00 0.00 1.82
207 209 4.497340 CGCTACCAAAGAAAAGCACAAGAA 60.497 41.667 0.00 0.00 34.60 2.52
213 215 3.701241 CAAACGCTACCAAAGAAAAGCA 58.299 40.909 0.00 0.00 34.60 3.91
214 216 2.471370 GCAAACGCTACCAAAGAAAAGC 59.529 45.455 0.00 0.00 0.00 3.51
220 222 4.419522 ACATTAGCAAACGCTACCAAAG 57.580 40.909 0.00 0.00 41.69 2.77
230 232 3.830178 ACCAGGGGTTAACATTAGCAAAC 59.170 43.478 8.10 0.00 27.29 2.93
235 237 4.189231 CGAAGACCAGGGGTTAACATTAG 58.811 47.826 8.10 0.00 35.25 1.73
238 240 1.339727 GCGAAGACCAGGGGTTAACAT 60.340 52.381 8.10 0.00 35.25 2.71
242 244 2.652095 CCGCGAAGACCAGGGGTTA 61.652 63.158 8.23 0.00 35.25 2.85
245 247 4.760047 CACCGCGAAGACCAGGGG 62.760 72.222 8.23 0.00 44.81 4.79
251 253 4.072088 CGTTGGCACCGCGAAGAC 62.072 66.667 8.23 1.04 0.00 3.01
263 265 2.037136 CAAGCAGAGCCCTCGTTGG 61.037 63.158 0.00 0.00 34.09 3.77
268 270 1.134280 TCATTAGCAAGCAGAGCCCTC 60.134 52.381 0.00 0.00 0.00 4.30
269 271 0.914644 TCATTAGCAAGCAGAGCCCT 59.085 50.000 0.00 0.00 0.00 5.19
271 273 1.669779 CTGTCATTAGCAAGCAGAGCC 59.330 52.381 0.00 0.00 0.00 4.70
273 275 4.035324 CCAATCTGTCATTAGCAAGCAGAG 59.965 45.833 0.00 0.00 39.20 3.35
274 276 3.943381 CCAATCTGTCATTAGCAAGCAGA 59.057 43.478 0.00 0.00 39.98 4.26
276 278 3.954200 TCCAATCTGTCATTAGCAAGCA 58.046 40.909 0.00 0.00 0.00 3.91
277 279 5.511234 AATCCAATCTGTCATTAGCAAGC 57.489 39.130 0.00 0.00 0.00 4.01
285 289 6.041865 TGGTTGAACAAAATCCAATCTGTCAT 59.958 34.615 0.00 0.00 0.00 3.06
309 313 2.738147 GTCATCGGACGACACCTTG 58.262 57.895 0.00 0.00 33.68 3.61
342 346 6.423302 GGTTTCATCTAGATCTGCACACTATG 59.577 42.308 5.18 0.00 0.00 2.23
343 347 6.326064 AGGTTTCATCTAGATCTGCACACTAT 59.674 38.462 5.18 0.00 0.00 2.12
347 351 6.098838 ACATAGGTTTCATCTAGATCTGCACA 59.901 38.462 5.18 0.00 0.00 4.57
348 352 6.520272 ACATAGGTTTCATCTAGATCTGCAC 58.480 40.000 5.18 0.00 0.00 4.57
349 353 6.737720 ACATAGGTTTCATCTAGATCTGCA 57.262 37.500 5.18 0.00 0.00 4.41
352 356 9.388506 CACAAAACATAGGTTTCATCTAGATCT 57.611 33.333 5.89 0.00 46.20 2.75
356 360 6.092122 TCGCACAAAACATAGGTTTCATCTAG 59.908 38.462 5.89 0.00 46.20 2.43
357 361 5.935206 TCGCACAAAACATAGGTTTCATCTA 59.065 36.000 5.89 0.00 46.20 1.98
359 363 4.851558 GTCGCACAAAACATAGGTTTCATC 59.148 41.667 5.89 0.00 46.20 2.92
360 364 4.518970 AGTCGCACAAAACATAGGTTTCAT 59.481 37.500 5.89 0.00 46.20 2.57
361 365 3.880490 AGTCGCACAAAACATAGGTTTCA 59.120 39.130 5.89 0.00 46.20 2.69
362 366 4.483476 AGTCGCACAAAACATAGGTTTC 57.517 40.909 5.89 0.00 46.20 2.78
364 368 3.880490 TCAAGTCGCACAAAACATAGGTT 59.120 39.130 0.00 0.00 39.43 3.50
365 369 3.250040 GTCAAGTCGCACAAAACATAGGT 59.750 43.478 0.00 0.00 0.00 3.08
366 370 3.249799 TGTCAAGTCGCACAAAACATAGG 59.750 43.478 0.00 0.00 0.00 2.57
367 371 4.466567 TGTCAAGTCGCACAAAACATAG 57.533 40.909 0.00 0.00 0.00 2.23
405 409 1.292223 CACGAGACCAATCCACCGT 59.708 57.895 0.00 0.00 0.00 4.83
459 465 2.091720 TCCATTTGCAGATACAGCCCAT 60.092 45.455 0.00 0.00 0.00 4.00
479 491 0.595095 CAGGAAAAGGCACACAGCTC 59.405 55.000 0.00 0.00 44.79 4.09
480 492 0.106519 ACAGGAAAAGGCACACAGCT 60.107 50.000 0.00 0.00 44.79 4.24
481 493 1.266989 GTACAGGAAAAGGCACACAGC 59.733 52.381 0.00 0.00 44.65 4.40
483 495 4.425180 TTAGTACAGGAAAAGGCACACA 57.575 40.909 0.00 0.00 0.00 3.72
484 496 5.296813 CATTAGTACAGGAAAAGGCACAC 57.703 43.478 0.00 0.00 0.00 3.82
971 984 1.273886 GAGAAACTCGGAGGACTTGCT 59.726 52.381 10.23 0.00 0.00 3.91
974 987 1.268066 GGGAGAAACTCGGAGGACTT 58.732 55.000 10.23 0.00 0.00 3.01
1023 1059 3.744719 TCCTCGACCGGTTCTGCG 61.745 66.667 9.42 8.01 0.00 5.18
1079 1121 3.207669 CATTGGAGGAGGCGCTGC 61.208 66.667 7.64 0.00 0.00 5.25
1387 1858 0.958876 TACAGAGAAGCGCCACGAGA 60.959 55.000 2.29 0.00 0.00 4.04
1402 1915 2.213499 GAACATCGCAGGGGAATACAG 58.787 52.381 0.00 0.00 0.00 2.74
1410 1923 0.670546 ACGAGTTGAACATCGCAGGG 60.671 55.000 14.06 0.00 42.61 4.45
1472 1985 4.592942 TGCTAAGAAGTGCCAGATTCATT 58.407 39.130 0.00 0.00 0.00 2.57
1505 2040 1.726791 CACGTCCCGAACAGAAAGATG 59.273 52.381 0.00 0.00 0.00 2.90
1522 2057 3.338249 AGATCACAGTTCCAATTCCACG 58.662 45.455 0.00 0.00 0.00 4.94
1553 2088 5.755849 ACTAAATCATCCCCAAGATTTCGT 58.244 37.500 3.91 2.29 41.93 3.85
1554 2089 6.699575 AACTAAATCATCCCCAAGATTTCG 57.300 37.500 3.91 1.73 41.93 3.46
1614 2153 2.649816 AGGCCTGGAAAACACCTAATCT 59.350 45.455 3.11 0.00 0.00 2.40
1623 2162 2.825532 TCAATTAGCAGGCCTGGAAAAC 59.174 45.455 33.46 16.68 0.00 2.43
1643 2284 7.020010 CAGCACTGAACAAGAACAAGATAATC 58.980 38.462 0.00 0.00 0.00 1.75
1657 2298 6.656270 ACAAGATAATCAATCAGCACTGAACA 59.344 34.615 4.14 0.00 43.58 3.18
1658 2299 7.081526 ACAAGATAATCAATCAGCACTGAAC 57.918 36.000 4.14 0.00 43.58 3.18
1659 2300 7.609146 AGAACAAGATAATCAATCAGCACTGAA 59.391 33.333 4.14 0.00 43.58 3.02
1660 2301 7.108194 AGAACAAGATAATCAATCAGCACTGA 58.892 34.615 2.25 2.25 44.59 3.41
1661 2302 7.317842 AGAACAAGATAATCAATCAGCACTG 57.682 36.000 0.00 0.00 37.03 3.66
1662 2303 7.392673 ACAAGAACAAGATAATCAATCAGCACT 59.607 33.333 0.00 0.00 37.03 4.40
1663 2304 7.533426 ACAAGAACAAGATAATCAATCAGCAC 58.467 34.615 0.00 0.00 37.03 4.40
1664 2305 7.692460 ACAAGAACAAGATAATCAATCAGCA 57.308 32.000 0.00 0.00 37.03 4.41
1665 2306 8.239314 TGAACAAGAACAAGATAATCAATCAGC 58.761 33.333 0.00 0.00 37.03 4.26
1666 2307 9.770503 CTGAACAAGAACAAGATAATCAATCAG 57.229 33.333 0.00 0.00 37.03 2.90
1667 2308 9.288576 ACTGAACAAGAACAAGATAATCAATCA 57.711 29.630 0.00 0.00 37.03 2.57
1668 2309 9.552114 CACTGAACAAGAACAAGATAATCAATC 57.448 33.333 0.00 0.00 34.52 2.67
1669 2310 8.025445 GCACTGAACAAGAACAAGATAATCAAT 58.975 33.333 0.00 0.00 0.00 2.57
1670 2311 7.229306 AGCACTGAACAAGAACAAGATAATCAA 59.771 33.333 0.00 0.00 0.00 2.57
1671 2312 6.712095 AGCACTGAACAAGAACAAGATAATCA 59.288 34.615 0.00 0.00 0.00 2.57
1672 2313 7.138692 AGCACTGAACAAGAACAAGATAATC 57.861 36.000 0.00 0.00 0.00 1.75
1673 2314 8.621532 TTAGCACTGAACAAGAACAAGATAAT 57.378 30.769 0.00 0.00 0.00 1.28
1674 2315 8.621532 ATTAGCACTGAACAAGAACAAGATAA 57.378 30.769 0.00 0.00 0.00 1.75
1675 2316 8.506437 CAATTAGCACTGAACAAGAACAAGATA 58.494 33.333 0.00 0.00 0.00 1.98
1676 2317 7.229306 TCAATTAGCACTGAACAAGAACAAGAT 59.771 33.333 0.00 0.00 0.00 2.40
1677 2318 6.542005 TCAATTAGCACTGAACAAGAACAAGA 59.458 34.615 0.00 0.00 0.00 3.02
1678 2319 6.728200 TCAATTAGCACTGAACAAGAACAAG 58.272 36.000 0.00 0.00 0.00 3.16
1679 2320 6.691754 TCAATTAGCACTGAACAAGAACAA 57.308 33.333 0.00 0.00 0.00 2.83
1680 2321 6.882610 ATCAATTAGCACTGAACAAGAACA 57.117 33.333 0.00 0.00 0.00 3.18
1681 2322 7.588512 AGAATCAATTAGCACTGAACAAGAAC 58.411 34.615 0.00 0.00 0.00 3.01
1682 2323 7.750229 AGAATCAATTAGCACTGAACAAGAA 57.250 32.000 0.00 0.00 0.00 2.52
1683 2324 7.094634 GGAAGAATCAATTAGCACTGAACAAGA 60.095 37.037 0.00 0.00 0.00 3.02
1684 2325 7.025963 GGAAGAATCAATTAGCACTGAACAAG 58.974 38.462 0.00 0.00 0.00 3.16
1685 2326 6.489700 TGGAAGAATCAATTAGCACTGAACAA 59.510 34.615 0.00 0.00 0.00 2.83
1709 2350 2.910688 ACATGCTACCCTACCGAATG 57.089 50.000 0.00 0.00 0.00 2.67
1973 3175 1.376037 GACCTGTGTACTGCTGCCC 60.376 63.158 0.00 0.00 0.00 5.36
2110 3400 4.437239 AGGAAGCTCATACATTCGACTTG 58.563 43.478 0.00 0.00 0.00 3.16
2155 3445 9.606631 ACTAATGCCTAGATTAAAGTTTCTGAG 57.393 33.333 0.00 0.00 0.00 3.35
2227 3523 5.048434 TGGTTGTCGATTTTGCATGTCAATA 60.048 36.000 0.00 0.00 34.12 1.90
2231 3527 2.979813 GTGGTTGTCGATTTTGCATGTC 59.020 45.455 0.00 0.00 0.00 3.06
2245 3541 6.014840 TCTCGACTAAATCCTAAAGTGGTTGT 60.015 38.462 0.00 0.00 0.00 3.32
2466 3848 7.795482 TGAAGAAAACGAAGATAAAGACCAA 57.205 32.000 0.00 0.00 0.00 3.67
2476 3858 5.820423 TGACAGGAAATGAAGAAAACGAAGA 59.180 36.000 0.00 0.00 0.00 2.87
2516 3901 3.541632 TCCGAACATATTGCCCTTTCTC 58.458 45.455 0.00 0.00 0.00 2.87
2519 3904 3.426615 TGTTCCGAACATATTGCCCTTT 58.573 40.909 9.99 0.00 36.25 3.11
3005 4524 4.021916 AGAAGCAAGCTTATGATGCCTTT 58.978 39.130 7.37 0.00 40.93 3.11
3182 4707 3.749088 TCCTGTTGTACATTCGCGAAAAT 59.251 39.130 27.23 18.68 0.00 1.82
3253 4778 3.881688 GCAGATTCACCATATCAACAGCT 59.118 43.478 0.00 0.00 0.00 4.24
3377 4935 1.269723 GCAAGCCTGTTTACCCAAGAC 59.730 52.381 0.00 0.00 0.00 3.01
3384 4942 1.616159 TCCCTTGCAAGCCTGTTTAC 58.384 50.000 21.43 0.00 0.00 2.01
3391 4949 1.700955 ATCATCATCCCTTGCAAGCC 58.299 50.000 21.43 0.00 0.00 4.35
3692 5261 4.889409 CAGTGTGGTGCCTATCCAATAAAT 59.111 41.667 0.00 0.00 36.68 1.40
3693 5262 4.263727 ACAGTGTGGTGCCTATCCAATAAA 60.264 41.667 0.00 0.00 36.68 1.40
3700 5269 2.289694 ACAGAACAGTGTGGTGCCTATC 60.290 50.000 0.00 0.00 0.00 2.08
4005 5616 6.146837 GCACATATTATGTCAGTGAGATGGAC 59.853 42.308 12.86 0.00 42.70 4.02
4114 5735 9.565213 CATGAGAACAAAAGGAAATATGACTTC 57.435 33.333 0.00 0.00 0.00 3.01
4271 5892 4.216472 GGATATGCGTCACTCACATCTAGA 59.784 45.833 0.00 0.00 0.00 2.43
4272 5893 4.217334 AGGATATGCGTCACTCACATCTAG 59.783 45.833 0.00 0.00 0.00 2.43
4273 5894 4.145052 AGGATATGCGTCACTCACATCTA 58.855 43.478 0.00 0.00 0.00 1.98
4280 5901 0.039074 CGGGAGGATATGCGTCACTC 60.039 60.000 0.00 0.00 32.68 3.51
4822 6669 3.911661 ACAGAAGAAGAATGCACAAGC 57.088 42.857 0.00 0.00 42.57 4.01
4856 6736 6.238897 CCACCAATTAGTAGCAACAAGTTCAA 60.239 38.462 0.00 0.00 0.00 2.69
4861 6741 3.758554 AGCCACCAATTAGTAGCAACAAG 59.241 43.478 0.00 0.00 0.00 3.16
4862 6742 3.505680 CAGCCACCAATTAGTAGCAACAA 59.494 43.478 0.00 0.00 0.00 2.83
4864 6744 2.423538 CCAGCCACCAATTAGTAGCAAC 59.576 50.000 0.00 0.00 0.00 4.17
4870 6770 8.500667 TTAGTATATACCAGCCACCAATTAGT 57.499 34.615 9.32 0.00 0.00 2.24
4878 6778 8.852135 GGAGATCTATTAGTATATACCAGCCAC 58.148 40.741 9.32 0.00 0.00 5.01
4930 6836 5.331902 CAGCCAACTCAACATTATTAACCG 58.668 41.667 0.00 0.00 0.00 4.44
5012 6919 2.359602 CAGTGGCACCAGCAGAGG 60.360 66.667 15.27 0.00 44.61 3.69
5037 6944 3.003689 AGCCAACACAAGAAAGAATGTCG 59.996 43.478 0.00 0.00 0.00 4.35
5059 6966 6.582636 CACCAGCAGTATGTATCCTTTCTTA 58.417 40.000 0.00 0.00 39.31 2.10
5066 6973 1.140852 TGGCACCAGCAGTATGTATCC 59.859 52.381 0.00 0.00 44.61 2.59
5082 6989 2.299582 CAAACTGACCAATCCAATGGCA 59.700 45.455 0.00 0.00 44.75 4.92
5095 7011 7.715249 TCTTCCTTGTATATATGCCAAACTGAC 59.285 37.037 0.00 0.00 0.00 3.51
5114 7030 4.287766 ACGACTGCCTATTTTCTTCCTT 57.712 40.909 0.00 0.00 0.00 3.36
5115 7031 3.983044 ACGACTGCCTATTTTCTTCCT 57.017 42.857 0.00 0.00 0.00 3.36
5116 7032 4.454504 TCAAACGACTGCCTATTTTCTTCC 59.545 41.667 0.00 0.00 0.00 3.46
5117 7033 5.607119 TCAAACGACTGCCTATTTTCTTC 57.393 39.130 0.00 0.00 0.00 2.87
5118 7034 6.575162 AATCAAACGACTGCCTATTTTCTT 57.425 33.333 0.00 0.00 0.00 2.52
5119 7035 6.879458 ACTAATCAAACGACTGCCTATTTTCT 59.121 34.615 0.00 0.00 0.00 2.52
5120 7036 7.073342 ACTAATCAAACGACTGCCTATTTTC 57.927 36.000 0.00 0.00 0.00 2.29
5121 7037 7.448748 AACTAATCAAACGACTGCCTATTTT 57.551 32.000 0.00 0.00 0.00 1.82
5122 7038 7.040686 ACAAACTAATCAAACGACTGCCTATTT 60.041 33.333 0.00 0.00 0.00 1.40
5123 7039 6.430000 ACAAACTAATCAAACGACTGCCTATT 59.570 34.615 0.00 0.00 0.00 1.73
5124 7040 5.938125 ACAAACTAATCAAACGACTGCCTAT 59.062 36.000 0.00 0.00 0.00 2.57
5125 7041 5.302360 ACAAACTAATCAAACGACTGCCTA 58.698 37.500 0.00 0.00 0.00 3.93
5178 7160 6.884280 ACAAACTAATGATATAGGCAAGGC 57.116 37.500 0.00 0.00 0.00 4.35
5206 7188 9.832445 GGAATACAAAATACTAGATCAAGGTCA 57.168 33.333 0.00 0.00 0.00 4.02
5207 7189 9.832445 TGGAATACAAAATACTAGATCAAGGTC 57.168 33.333 0.00 0.00 0.00 3.85
5254 7236 2.771089 CTTAACAAGCAGAGGCAGACA 58.229 47.619 0.00 0.00 44.61 3.41
5271 7253 5.008613 GTCAGGTTGTGATTCAAACAGCTTA 59.991 40.000 11.30 0.00 45.36 3.09
5294 7279 4.935808 GCATTGCAAAGTAGTAGTACCAGT 59.064 41.667 1.71 0.00 0.00 4.00
5306 7291 2.029649 CAGCCTTAGTGCATTGCAAAGT 60.030 45.455 13.94 3.81 41.47 2.66
5307 7292 2.602878 CAGCCTTAGTGCATTGCAAAG 58.397 47.619 13.94 13.81 41.47 2.77
5308 7293 1.273048 CCAGCCTTAGTGCATTGCAAA 59.727 47.619 13.94 4.19 41.47 3.68
5309 7294 0.889994 CCAGCCTTAGTGCATTGCAA 59.110 50.000 13.94 0.00 41.47 4.08
5310 7295 0.251297 ACCAGCCTTAGTGCATTGCA 60.251 50.000 7.38 7.38 35.60 4.08
5311 7296 0.453390 GACCAGCCTTAGTGCATTGC 59.547 55.000 0.46 0.46 0.00 3.56
5312 7297 1.470098 GTGACCAGCCTTAGTGCATTG 59.530 52.381 0.00 0.00 0.00 2.82
5313 7298 1.073763 TGTGACCAGCCTTAGTGCATT 59.926 47.619 0.00 0.00 0.00 3.56
5314 7299 0.692476 TGTGACCAGCCTTAGTGCAT 59.308 50.000 0.00 0.00 0.00 3.96
5315 7300 0.472044 TTGTGACCAGCCTTAGTGCA 59.528 50.000 0.00 0.00 0.00 4.57
5316 7301 1.470098 CATTGTGACCAGCCTTAGTGC 59.530 52.381 0.00 0.00 0.00 4.40
5317 7302 2.086869 CCATTGTGACCAGCCTTAGTG 58.913 52.381 0.00 0.00 0.00 2.74
5318 7303 1.004745 CCCATTGTGACCAGCCTTAGT 59.995 52.381 0.00 0.00 0.00 2.24
5319 7304 1.755179 CCCATTGTGACCAGCCTTAG 58.245 55.000 0.00 0.00 0.00 2.18
5320 7305 0.323360 GCCCATTGTGACCAGCCTTA 60.323 55.000 0.00 0.00 0.00 2.69
5321 7306 1.607467 GCCCATTGTGACCAGCCTT 60.607 57.895 0.00 0.00 0.00 4.35
5359 7344 9.476928 AGTAACATAGTCTAGGAAACTGTGTAT 57.523 33.333 11.28 6.46 44.96 2.29
5449 7434 5.412594 TCACACACTCCAAGAAATAATGAGC 59.587 40.000 0.00 0.00 0.00 4.26
5456 7441 4.520492 GGAACATCACACACTCCAAGAAAT 59.480 41.667 0.00 0.00 0.00 2.17
5503 7488 9.270640 GCACATATTTAATGAAGAGAGAGATGT 57.729 33.333 0.00 0.00 0.00 3.06
5506 7491 7.712639 GTGGCACATATTTAATGAAGAGAGAGA 59.287 37.037 13.86 0.00 44.52 3.10
5597 7582 1.344496 ACTCCCACTATGGCTAGCCTT 60.344 52.381 33.07 28.43 35.79 4.35
5599 7584 2.011122 TACTCCCACTATGGCTAGCC 57.989 55.000 27.71 27.71 35.79 3.93
5603 7588 3.967987 CCTAAGTTACTCCCACTATGGCT 59.032 47.826 0.00 0.00 35.79 4.75
5625 8863 8.732746 ATTCTTGGGATGTGTTATGTTACTAC 57.267 34.615 0.00 0.00 0.00 2.73
5630 8868 7.722949 ATTGATTCTTGGGATGTGTTATGTT 57.277 32.000 0.00 0.00 0.00 2.71
5633 8871 6.381994 AGCAATTGATTCTTGGGATGTGTTAT 59.618 34.615 10.34 0.00 0.00 1.89
5634 8872 5.716228 AGCAATTGATTCTTGGGATGTGTTA 59.284 36.000 10.34 0.00 0.00 2.41
5635 8873 4.529377 AGCAATTGATTCTTGGGATGTGTT 59.471 37.500 10.34 0.00 0.00 3.32
5637 8875 4.730949 AGCAATTGATTCTTGGGATGTG 57.269 40.909 10.34 0.00 0.00 3.21
5638 8876 5.334724 GAAGCAATTGATTCTTGGGATGT 57.665 39.130 25.32 0.00 37.46 3.06
5647 8885 3.581024 TGCCACAGAAGCAATTGATTC 57.419 42.857 25.27 25.27 40.47 2.52
5648 8886 3.369052 CCATGCCACAGAAGCAATTGATT 60.369 43.478 9.03 9.03 44.83 2.57
5649 8887 2.167693 CCATGCCACAGAAGCAATTGAT 59.832 45.455 10.34 0.00 44.83 2.57
5653 8891 1.272313 ACTCCATGCCACAGAAGCAAT 60.272 47.619 0.00 0.00 44.83 3.56
5655 8893 0.111061 AACTCCATGCCACAGAAGCA 59.889 50.000 0.00 0.00 45.94 3.91
5656 8894 2.113860 TAACTCCATGCCACAGAAGC 57.886 50.000 0.00 0.00 0.00 3.86
5657 8895 4.264253 TCATTAACTCCATGCCACAGAAG 58.736 43.478 0.00 0.00 0.00 2.85
5659 8897 3.370846 CCTCATTAACTCCATGCCACAGA 60.371 47.826 0.00 0.00 0.00 3.41
5660 8898 2.947652 CCTCATTAACTCCATGCCACAG 59.052 50.000 0.00 0.00 0.00 3.66
5661 8899 2.575735 TCCTCATTAACTCCATGCCACA 59.424 45.455 0.00 0.00 0.00 4.17
5662 8900 3.281727 TCCTCATTAACTCCATGCCAC 57.718 47.619 0.00 0.00 0.00 5.01
5663 8901 4.018506 TCTTTCCTCATTAACTCCATGCCA 60.019 41.667 0.00 0.00 0.00 4.92
5664 8902 4.526970 TCTTTCCTCATTAACTCCATGCC 58.473 43.478 0.00 0.00 0.00 4.40
5665 8903 5.431765 TCTCTTTCCTCATTAACTCCATGC 58.568 41.667 0.00 0.00 0.00 4.06
5666 8904 6.017275 GCATCTCTTTCCTCATTAACTCCATG 60.017 42.308 0.00 0.00 0.00 3.66
5667 8905 6.060788 GCATCTCTTTCCTCATTAACTCCAT 58.939 40.000 0.00 0.00 0.00 3.41
5668 8906 5.190528 AGCATCTCTTTCCTCATTAACTCCA 59.809 40.000 0.00 0.00 0.00 3.86
5669 8907 5.679601 AGCATCTCTTTCCTCATTAACTCC 58.320 41.667 0.00 0.00 0.00 3.85
5670 8908 6.597280 ACAAGCATCTCTTTCCTCATTAACTC 59.403 38.462 0.00 0.00 31.27 3.01
5673 8911 5.649395 CCACAAGCATCTCTTTCCTCATTAA 59.351 40.000 0.00 0.00 31.27 1.40
5674 8912 5.188434 CCACAAGCATCTCTTTCCTCATTA 58.812 41.667 0.00 0.00 31.27 1.90
5677 8915 2.373169 ACCACAAGCATCTCTTTCCTCA 59.627 45.455 0.00 0.00 31.27 3.86
5678 8916 3.064900 ACCACAAGCATCTCTTTCCTC 57.935 47.619 0.00 0.00 31.27 3.71
5679 8917 4.202461 TGTTACCACAAGCATCTCTTTCCT 60.202 41.667 0.00 0.00 31.27 3.36
5681 8919 5.886960 ATGTTACCACAAGCATCTCTTTC 57.113 39.130 0.00 0.00 36.16 2.62
5683 8921 9.060347 CATATTATGTTACCACAAGCATCTCTT 57.940 33.333 0.00 0.00 36.16 2.85
5684 8922 8.213679 ACATATTATGTTACCACAAGCATCTCT 58.786 33.333 3.40 0.00 41.63 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.