Multiple sequence alignment - TraesCS6B01G073100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G073100 chr6B 100.000 2312 0 0 1 2312 49595456 49597767 0.000000e+00 4270.0
1 TraesCS6B01G073100 chr6B 93.862 945 45 7 265 1196 48689724 48688780 0.000000e+00 1411.0
2 TraesCS6B01G073100 chr6B 83.485 551 71 13 777 1310 58057901 58057354 1.600000e-136 496.0
3 TraesCS6B01G073100 chr6B 92.330 352 16 1 1198 1549 48688695 48688355 7.420000e-135 490.0
4 TraesCS6B01G073100 chr6B 83.640 544 59 19 790 1312 59588527 59587993 3.450000e-133 484.0
5 TraesCS6B01G073100 chr6B 92.823 209 14 1 381 589 48764491 48764284 3.730000e-78 302.0
6 TraesCS6B01G073100 chr6B 92.344 209 15 1 381 589 48730900 48730693 1.740000e-76 296.0
7 TraesCS6B01G073100 chr6B 93.500 200 12 1 381 580 49557830 49558028 1.740000e-76 296.0
8 TraesCS6B01G073100 chr6B 83.636 330 38 10 265 586 116104445 116104766 1.740000e-76 296.0
9 TraesCS6B01G073100 chr6B 75.127 197 25 15 1560 1736 225282176 225281984 1.150000e-08 71.3
10 TraesCS6B01G073100 chrUn 89.825 570 44 4 753 1310 137920060 137920627 0.000000e+00 719.0
11 TraesCS6B01G073100 chrUn 82.960 581 68 24 779 1351 27335127 27335684 1.600000e-136 496.0
12 TraesCS6B01G073100 chrUn 97.744 266 6 0 1 266 221838749 221839014 2.090000e-125 459.0
13 TraesCS6B01G073100 chr6A 87.370 578 59 11 753 1321 45347521 45346949 0.000000e+00 651.0
14 TraesCS6B01G073100 chr6A 91.618 346 22 6 966 1310 28641016 28641355 2.690000e-129 472.0
15 TraesCS6B01G073100 chr6A 81.723 383 61 9 1936 2312 280429596 280429217 6.200000e-81 311.0
16 TraesCS6B01G073100 chr6A 83.067 313 52 1 2000 2312 277686702 277687013 1.350000e-72 283.0
17 TraesCS6B01G073100 chr6A 79.821 223 26 16 266 478 582485971 582486184 6.660000e-31 145.0
18 TraesCS6B01G073100 chr6A 96.226 53 1 1 1765 1817 277686531 277686582 4.090000e-13 86.1
19 TraesCS6B01G073100 chr2A 82.710 642 75 21 731 1361 712805126 712804510 2.610000e-149 538.0
20 TraesCS6B01G073100 chr6D 84.448 553 67 11 774 1310 29756765 29757314 5.660000e-146 527.0
21 TraesCS6B01G073100 chr6D 80.312 706 96 37 730 1422 29384565 29385240 5.740000e-136 494.0
22 TraesCS6B01G073100 chr6D 78.029 487 82 17 1831 2310 149057949 149057481 1.350000e-72 283.0
23 TraesCS6B01G073100 chr6D 87.435 191 24 0 2122 2312 129148824 129148634 1.080000e-53 220.0
24 TraesCS6B01G073100 chr6D 86.387 191 26 0 2122 2312 129124071 129123881 2.330000e-50 209.0
25 TraesCS6B01G073100 chr6D 80.488 287 36 13 1746 2017 221008220 221007939 3.900000e-48 202.0
26 TraesCS6B01G073100 chr6D 85.955 178 22 3 1550 1725 221008306 221008130 1.090000e-43 187.0
27 TraesCS6B01G073100 chr6D 79.336 271 31 12 1872 2120 149051639 149051372 1.420000e-37 167.0
28 TraesCS6B01G073100 chr6D 79.487 195 38 2 2119 2312 221880306 221880499 1.110000e-28 137.0
29 TraesCS6B01G073100 chr6D 80.255 157 22 8 1746 1898 72308877 72309028 2.430000e-20 110.0
30 TraesCS6B01G073100 chr6D 87.719 57 5 2 1746 1801 72240920 72240975 5.330000e-07 65.8
31 TraesCS6B01G073100 chr6D 95.238 42 1 1 1688 1729 212210207 212210167 5.330000e-07 65.8
32 TraesCS6B01G073100 chr5B 97.744 266 6 0 1 266 385940089 385939824 2.090000e-125 459.0
33 TraesCS6B01G073100 chr5B 97.744 266 6 0 1 266 580588378 580588113 2.090000e-125 459.0
34 TraesCS6B01G073100 chr5B 83.108 148 19 5 1560 1703 190461753 190461608 1.860000e-26 130.0
35 TraesCS6B01G073100 chr5B 80.180 111 17 5 1560 1666 172546470 172546361 6.850000e-11 78.7
36 TraesCS6B01G073100 chr4B 97.744 266 6 0 1 266 150325197 150324932 2.090000e-125 459.0
37 TraesCS6B01G073100 chr4B 80.000 565 88 17 1765 2312 288992736 288993292 5.990000e-106 394.0
38 TraesCS6B01G073100 chr4B 79.538 606 78 26 1746 2311 288930744 288931343 7.750000e-105 390.0
39 TraesCS6B01G073100 chr4B 79.918 244 23 16 1560 1785 335246527 335246292 3.080000e-34 156.0
40 TraesCS6B01G073100 chr4B 73.457 324 53 25 1804 2106 356599420 356599109 8.800000e-15 91.6
41 TraesCS6B01G073100 chr4B 77.852 149 26 7 1872 2017 310073605 310073461 4.090000e-13 86.1
42 TraesCS6B01G073100 chr4B 77.181 149 27 7 1872 2017 310058384 310058240 1.900000e-11 80.5
43 TraesCS6B01G073100 chr4B 76.582 158 28 8 1800 1953 237621375 237621527 6.850000e-11 78.7
44 TraesCS6B01G073100 chr2B 97.744 266 6 0 1 266 214794296 214794031 2.090000e-125 459.0
45 TraesCS6B01G073100 chr2B 97.744 266 6 0 1 266 375848870 375848605 2.090000e-125 459.0
46 TraesCS6B01G073100 chr2B 97.368 266 7 0 1 266 631277621 631277886 9.740000e-124 453.0
47 TraesCS6B01G073100 chr1B 97.744 266 6 0 1 266 286251442 286251177 2.090000e-125 459.0
48 TraesCS6B01G073100 chr1B 95.745 282 9 3 1 282 301671684 301671962 3.500000e-123 451.0
49 TraesCS6B01G073100 chr1B 88.545 323 33 3 266 587 31819825 31820144 2.790000e-104 388.0
50 TraesCS6B01G073100 chr1B 84.466 103 9 5 1550 1648 246389545 246389644 6.800000e-16 95.3
51 TraesCS6B01G073100 chr1B 87.209 86 6 5 1742 1824 222474160 222474243 2.450000e-15 93.5
52 TraesCS6B01G073100 chr4D 79.756 573 99 15 1746 2310 179815392 179814829 1.290000e-107 399.0
53 TraesCS6B01G073100 chr4D 81.022 548 62 17 1765 2312 215751153 215750648 4.630000e-107 398.0
54 TraesCS6B01G073100 chr4D 78.931 636 93 31 1690 2312 215743267 215742660 5.990000e-106 394.0
55 TraesCS6B01G073100 chr4D 82.105 380 64 4 1936 2312 174553691 174553313 2.870000e-84 322.0
56 TraesCS6B01G073100 chr4D 81.003 379 69 3 1936 2312 217022025 217021648 4.830000e-77 298.0
57 TraesCS6B01G073100 chr4D 86.224 196 25 2 2118 2312 215053587 215053393 6.470000e-51 211.0
58 TraesCS6B01G073100 chr4D 74.414 555 106 28 1766 2312 259257533 259257007 3.010000e-49 206.0
59 TraesCS6B01G073100 chr4D 84.615 169 21 4 1560 1725 179815467 179815301 1.840000e-36 163.0
60 TraesCS6B01G073100 chr4D 84.553 123 19 0 1765 1887 215743248 215743126 3.120000e-24 122.0
61 TraesCS6B01G073100 chr4D 93.333 75 5 0 1651 1725 108054295 108054221 6.750000e-21 111.0
62 TraesCS6B01G073100 chr4D 82.569 109 19 0 2043 2151 445797216 445797324 1.890000e-16 97.1
63 TraesCS6B01G073100 chr7D 79.760 583 86 23 1740 2312 336443440 336444000 5.990000e-106 394.0
64 TraesCS6B01G073100 chr7D 88.438 320 34 2 266 584 79970285 79969968 1.300000e-102 383.0
65 TraesCS6B01G073100 chr2D 78.411 579 90 28 1746 2312 283069916 283069361 6.120000e-91 344.0
66 TraesCS6B01G073100 chr2D 83.069 189 28 4 1831 2017 315764595 315764409 3.950000e-38 169.0
67 TraesCS6B01G073100 chr3D 78.459 571 90 25 1765 2312 214128120 214127560 2.200000e-90 342.0
68 TraesCS6B01G073100 chr3D 81.250 192 28 7 1765 1953 301541609 301541795 5.150000e-32 148.0
69 TraesCS6B01G073100 chr5D 77.311 595 96 25 1746 2310 155891195 155890610 4.800000e-82 315.0
70 TraesCS6B01G073100 chr5D 75.290 518 88 26 1798 2309 283487480 283487963 6.470000e-51 211.0
71 TraesCS6B01G073100 chr5D 73.047 512 97 34 1831 2310 78141119 78140617 2.390000e-30 143.0
72 TraesCS6B01G073100 chr5D 79.186 221 33 9 1550 1761 154371008 154370792 8.610000e-30 141.0
73 TraesCS6B01G073100 chr7A 84.615 325 39 9 266 586 694141129 694141446 1.720000e-81 313.0
74 TraesCS6B01G073100 chr7A 90.476 210 18 2 378 586 34188612 34188820 2.260000e-70 276.0
75 TraesCS6B01G073100 chr7A 85.778 225 23 8 1564 1780 595217819 595218042 1.790000e-56 230.0
76 TraesCS6B01G073100 chr7A 85.714 98 14 0 1684 1781 376753803 376753900 1.130000e-18 104.0
77 TraesCS6B01G073100 chr3A 80.180 222 27 15 266 478 17526612 17526825 1.430000e-32 150.0
78 TraesCS6B01G073100 chr3A 78.899 218 35 11 267 478 21999667 21999879 1.110000e-28 137.0
79 TraesCS6B01G073100 chr3B 78.995 219 35 10 1740 1953 300731506 300731294 3.100000e-29 139.0
80 TraesCS6B01G073100 chr7B 82.787 122 16 4 1550 1668 125632808 125632927 1.130000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G073100 chr6B 49595456 49597767 2311 False 4270.0 4270 100.0000 1 2312 1 chr6B.!!$F2 2311
1 TraesCS6B01G073100 chr6B 48688355 48689724 1369 True 950.5 1411 93.0960 265 1549 2 chr6B.!!$R6 1284
2 TraesCS6B01G073100 chr6B 58057354 58057901 547 True 496.0 496 83.4850 777 1310 1 chr6B.!!$R3 533
3 TraesCS6B01G073100 chr6B 59587993 59588527 534 True 484.0 484 83.6400 790 1312 1 chr6B.!!$R4 522
4 TraesCS6B01G073100 chrUn 137920060 137920627 567 False 719.0 719 89.8250 753 1310 1 chrUn.!!$F2 557
5 TraesCS6B01G073100 chrUn 27335127 27335684 557 False 496.0 496 82.9600 779 1351 1 chrUn.!!$F1 572
6 TraesCS6B01G073100 chr6A 45346949 45347521 572 True 651.0 651 87.3700 753 1321 1 chr6A.!!$R1 568
7 TraesCS6B01G073100 chr2A 712804510 712805126 616 True 538.0 538 82.7100 731 1361 1 chr2A.!!$R1 630
8 TraesCS6B01G073100 chr6D 29756765 29757314 549 False 527.0 527 84.4480 774 1310 1 chr6D.!!$F2 536
9 TraesCS6B01G073100 chr6D 29384565 29385240 675 False 494.0 494 80.3120 730 1422 1 chr6D.!!$F1 692
10 TraesCS6B01G073100 chr4B 288992736 288993292 556 False 394.0 394 80.0000 1765 2312 1 chr4B.!!$F3 547
11 TraesCS6B01G073100 chr4B 288930744 288931343 599 False 390.0 390 79.5380 1746 2311 1 chr4B.!!$F2 565
12 TraesCS6B01G073100 chr4D 215750648 215751153 505 True 398.0 398 81.0220 1765 2312 1 chr4D.!!$R4 547
13 TraesCS6B01G073100 chr4D 179814829 179815467 638 True 281.0 399 82.1855 1560 2310 2 chr4D.!!$R7 750
14 TraesCS6B01G073100 chr4D 215742660 215743267 607 True 258.0 394 81.7420 1690 2312 2 chr4D.!!$R8 622
15 TraesCS6B01G073100 chr4D 259257007 259257533 526 True 206.0 206 74.4140 1766 2312 1 chr4D.!!$R6 546
16 TraesCS6B01G073100 chr7D 336443440 336444000 560 False 394.0 394 79.7600 1740 2312 1 chr7D.!!$F1 572
17 TraesCS6B01G073100 chr2D 283069361 283069916 555 True 344.0 344 78.4110 1746 2312 1 chr2D.!!$R1 566
18 TraesCS6B01G073100 chr3D 214127560 214128120 560 True 342.0 342 78.4590 1765 2312 1 chr3D.!!$R1 547
19 TraesCS6B01G073100 chr5D 155890610 155891195 585 True 315.0 315 77.3110 1746 2310 1 chr5D.!!$R3 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1033 0.036294 GCGCCAAGGAAGGAGTAAGT 60.036 55.0 0.0 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1826 1968 1.374252 CTGACCGGTCTGGGTTTCG 60.374 63.158 33.39 9.23 44.64 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.233305 TGGAGTAGGGTCCAAGTCTC 57.767 55.000 0.00 0.00 44.01 3.36
20 21 1.273098 TGGAGTAGGGTCCAAGTCTCC 60.273 57.143 12.01 12.01 44.01 3.71
21 22 1.007359 GGAGTAGGGTCCAAGTCTCCT 59.993 57.143 11.78 0.00 38.56 3.69
22 23 2.104170 GAGTAGGGTCCAAGTCTCCTG 58.896 57.143 0.00 0.00 0.00 3.86
23 24 1.196012 GTAGGGTCCAAGTCTCCTGG 58.804 60.000 0.00 0.00 0.00 4.45
24 25 1.089978 TAGGGTCCAAGTCTCCTGGA 58.910 55.000 0.00 0.00 0.00 3.86
25 26 0.419459 AGGGTCCAAGTCTCCTGGAT 59.581 55.000 0.00 0.00 33.91 3.41
26 27 0.833949 GGGTCCAAGTCTCCTGGATC 59.166 60.000 0.00 0.00 33.91 3.36
27 28 1.573108 GGTCCAAGTCTCCTGGATCA 58.427 55.000 0.00 0.00 33.26 2.92
28 29 1.208293 GGTCCAAGTCTCCTGGATCAC 59.792 57.143 0.00 0.00 33.26 3.06
29 30 1.134965 GTCCAAGTCTCCTGGATCACG 60.135 57.143 0.00 0.00 33.91 4.35
30 31 0.898320 CCAAGTCTCCTGGATCACGT 59.102 55.000 0.00 0.00 0.00 4.49
31 32 1.276421 CCAAGTCTCCTGGATCACGTT 59.724 52.381 0.00 0.00 0.00 3.99
32 33 2.611518 CAAGTCTCCTGGATCACGTTC 58.388 52.381 0.00 0.00 0.00 3.95
33 34 0.811915 AGTCTCCTGGATCACGTTCG 59.188 55.000 0.00 0.00 0.00 3.95
34 35 0.179134 GTCTCCTGGATCACGTTCGG 60.179 60.000 0.00 0.00 0.00 4.30
35 36 0.611062 TCTCCTGGATCACGTTCGGT 60.611 55.000 0.00 0.00 0.00 4.69
57 58 5.673337 TGAGAAAATCACGTTTCTGAAGG 57.327 39.130 4.99 0.00 45.67 3.46
58 59 5.123227 TGAGAAAATCACGTTTCTGAAGGT 58.877 37.500 4.99 0.00 45.67 3.50
59 60 5.588648 TGAGAAAATCACGTTTCTGAAGGTT 59.411 36.000 4.99 0.00 45.67 3.50
60 61 6.094881 TGAGAAAATCACGTTTCTGAAGGTTT 59.905 34.615 4.99 0.00 45.67 3.27
61 62 6.495706 AGAAAATCACGTTTCTGAAGGTTTC 58.504 36.000 0.00 1.28 44.35 2.78
62 63 5.828299 AAATCACGTTTCTGAAGGTTTCA 57.172 34.783 0.00 0.00 38.17 2.69
63 64 6.391227 AAATCACGTTTCTGAAGGTTTCAT 57.609 33.333 0.00 0.00 39.30 2.57
64 65 6.391227 AATCACGTTTCTGAAGGTTTCATT 57.609 33.333 0.00 0.00 39.30 2.57
65 66 5.418310 TCACGTTTCTGAAGGTTTCATTC 57.582 39.130 0.00 0.00 39.30 2.67
66 67 4.274950 TCACGTTTCTGAAGGTTTCATTCC 59.725 41.667 0.00 0.00 39.30 3.01
67 68 3.250040 ACGTTTCTGAAGGTTTCATTCCG 59.750 43.478 0.00 0.00 39.30 4.30
68 69 3.250040 CGTTTCTGAAGGTTTCATTCCGT 59.750 43.478 0.00 0.00 39.30 4.69
69 70 4.261031 CGTTTCTGAAGGTTTCATTCCGTT 60.261 41.667 0.00 0.00 39.30 4.44
70 71 5.588240 GTTTCTGAAGGTTTCATTCCGTTT 58.412 37.500 0.00 0.00 39.30 3.60
71 72 4.829064 TCTGAAGGTTTCATTCCGTTTG 57.171 40.909 0.00 0.00 39.30 2.93
72 73 3.568007 TCTGAAGGTTTCATTCCGTTTGG 59.432 43.478 0.00 0.00 39.30 3.28
73 74 3.556999 TGAAGGTTTCATTCCGTTTGGA 58.443 40.909 0.00 0.00 37.33 3.53
74 75 3.316868 TGAAGGTTTCATTCCGTTTGGAC 59.683 43.478 0.00 0.00 38.31 4.02
75 76 3.223674 AGGTTTCATTCCGTTTGGACT 57.776 42.857 0.00 0.00 46.45 3.85
76 77 3.146847 AGGTTTCATTCCGTTTGGACTC 58.853 45.455 0.00 0.00 46.45 3.36
77 78 2.228103 GGTTTCATTCCGTTTGGACTCC 59.772 50.000 0.00 0.00 46.45 3.85
78 79 1.803334 TTCATTCCGTTTGGACTCCG 58.197 50.000 0.00 0.00 46.45 4.63
79 80 0.682852 TCATTCCGTTTGGACTCCGT 59.317 50.000 0.00 0.00 46.45 4.69
80 81 1.071071 TCATTCCGTTTGGACTCCGTT 59.929 47.619 0.00 0.00 46.45 4.44
81 82 1.877443 CATTCCGTTTGGACTCCGTTT 59.123 47.619 0.00 0.00 46.45 3.60
82 83 1.301423 TTCCGTTTGGACTCCGTTTG 58.699 50.000 0.00 0.00 46.45 2.93
83 84 0.464870 TCCGTTTGGACTCCGTTTGA 59.535 50.000 0.00 0.00 40.17 2.69
84 85 1.071071 TCCGTTTGGACTCCGTTTGAT 59.929 47.619 0.00 0.00 40.17 2.57
85 86 2.299582 TCCGTTTGGACTCCGTTTGATA 59.700 45.455 0.00 0.00 40.17 2.15
86 87 3.055675 TCCGTTTGGACTCCGTTTGATAT 60.056 43.478 0.00 0.00 40.17 1.63
87 88 3.687698 CCGTTTGGACTCCGTTTGATATT 59.312 43.478 0.00 0.00 37.49 1.28
88 89 4.201783 CCGTTTGGACTCCGTTTGATATTC 60.202 45.833 0.00 0.00 37.49 1.75
89 90 4.201783 CGTTTGGACTCCGTTTGATATTCC 60.202 45.833 0.00 0.00 0.00 3.01
90 91 3.173668 TGGACTCCGTTTGATATTCCG 57.826 47.619 0.00 0.00 0.00 4.30
91 92 2.498481 TGGACTCCGTTTGATATTCCGT 59.502 45.455 0.00 0.00 0.00 4.69
92 93 3.055675 TGGACTCCGTTTGATATTCCGTT 60.056 43.478 0.00 0.00 0.00 4.44
93 94 3.937079 GGACTCCGTTTGATATTCCGTTT 59.063 43.478 0.00 0.00 0.00 3.60
94 95 4.033702 GGACTCCGTTTGATATTCCGTTTC 59.966 45.833 0.00 0.00 0.00 2.78
95 96 4.828829 ACTCCGTTTGATATTCCGTTTCT 58.171 39.130 0.00 0.00 0.00 2.52
96 97 5.243207 ACTCCGTTTGATATTCCGTTTCTT 58.757 37.500 0.00 0.00 0.00 2.52
97 98 5.350640 ACTCCGTTTGATATTCCGTTTCTTC 59.649 40.000 0.00 0.00 0.00 2.87
98 99 4.327898 TCCGTTTGATATTCCGTTTCTTCG 59.672 41.667 0.00 0.00 0.00 3.79
99 100 4.327898 CCGTTTGATATTCCGTTTCTTCGA 59.672 41.667 0.00 0.00 0.00 3.71
100 101 5.163933 CCGTTTGATATTCCGTTTCTTCGAA 60.164 40.000 0.00 0.00 0.00 3.71
101 102 6.301108 CGTTTGATATTCCGTTTCTTCGAAA 58.699 36.000 0.00 0.00 0.00 3.46
102 103 6.245710 CGTTTGATATTCCGTTTCTTCGAAAC 59.754 38.462 0.00 8.92 0.00 2.78
103 104 6.788684 TTGATATTCCGTTTCTTCGAAACA 57.211 33.333 16.76 1.60 0.00 2.83
104 105 6.160664 TGATATTCCGTTTCTTCGAAACAC 57.839 37.500 16.76 0.00 0.00 3.32
105 106 5.929992 TGATATTCCGTTTCTTCGAAACACT 59.070 36.000 16.76 3.90 0.00 3.55
106 107 3.936902 TTCCGTTTCTTCGAAACACTG 57.063 42.857 16.76 7.10 0.00 3.66
107 108 3.167921 TCCGTTTCTTCGAAACACTGA 57.832 42.857 16.76 8.84 0.00 3.41
108 109 3.523547 TCCGTTTCTTCGAAACACTGAA 58.476 40.909 16.76 0.00 0.00 3.02
109 110 3.933955 TCCGTTTCTTCGAAACACTGAAA 59.066 39.130 16.76 2.34 0.00 2.69
110 111 4.573201 TCCGTTTCTTCGAAACACTGAAAT 59.427 37.500 16.76 0.00 0.00 2.17
111 112 5.754406 TCCGTTTCTTCGAAACACTGAAATA 59.246 36.000 16.76 1.27 0.00 1.40
112 113 6.071463 CCGTTTCTTCGAAACACTGAAATAG 58.929 40.000 16.76 9.19 0.00 1.73
113 114 6.071463 CGTTTCTTCGAAACACTGAAATAGG 58.929 40.000 16.76 3.40 0.00 2.57
114 115 6.371389 GTTTCTTCGAAACACTGAAATAGGG 58.629 40.000 13.02 0.00 35.29 3.53
115 116 5.477607 TCTTCGAAACACTGAAATAGGGA 57.522 39.130 0.00 0.00 32.67 4.20
116 117 5.860611 TCTTCGAAACACTGAAATAGGGAA 58.139 37.500 0.00 0.00 32.67 3.97
117 118 6.292923 TCTTCGAAACACTGAAATAGGGAAA 58.707 36.000 0.00 0.00 32.67 3.13
118 119 6.768861 TCTTCGAAACACTGAAATAGGGAAAA 59.231 34.615 0.00 0.00 32.67 2.29
119 120 6.945938 TCGAAACACTGAAATAGGGAAAAA 57.054 33.333 0.00 0.00 32.67 1.94
138 139 3.490439 AAACAAAAATTCTGGGCTGGG 57.510 42.857 0.00 0.00 0.00 4.45
139 140 0.686789 ACAAAAATTCTGGGCTGGGC 59.313 50.000 0.00 0.00 0.00 5.36
149 150 3.723922 GGCTGGGCCTCCGGTTAA 61.724 66.667 4.53 0.00 46.69 2.01
150 151 2.595655 GCTGGGCCTCCGGTTAAT 59.404 61.111 4.53 0.00 41.53 1.40
151 152 1.702022 GGCTGGGCCTCCGGTTAATA 61.702 60.000 4.53 0.00 46.69 0.98
152 153 0.250338 GCTGGGCCTCCGGTTAATAG 60.250 60.000 4.53 0.00 41.53 1.73
153 154 0.396811 CTGGGCCTCCGGTTAATAGG 59.603 60.000 4.53 0.51 34.69 2.57
154 155 0.326808 TGGGCCTCCGGTTAATAGGT 60.327 55.000 4.53 0.00 35.24 3.08
155 156 0.841961 GGGCCTCCGGTTAATAGGTT 59.158 55.000 0.84 0.00 32.67 3.50
156 157 2.049372 GGGCCTCCGGTTAATAGGTTA 58.951 52.381 0.84 0.00 32.67 2.85
157 158 2.038164 GGGCCTCCGGTTAATAGGTTAG 59.962 54.545 0.84 0.00 32.67 2.34
158 159 2.702478 GGCCTCCGGTTAATAGGTTAGT 59.298 50.000 0.00 0.00 32.67 2.24
159 160 3.244009 GGCCTCCGGTTAATAGGTTAGTC 60.244 52.174 0.00 0.00 32.67 2.59
160 161 3.244009 GCCTCCGGTTAATAGGTTAGTCC 60.244 52.174 0.00 0.00 32.67 3.85
161 162 3.323115 CCTCCGGTTAATAGGTTAGTCCC 59.677 52.174 0.00 0.00 36.75 4.46
162 163 3.962718 CTCCGGTTAATAGGTTAGTCCCA 59.037 47.826 0.00 0.00 36.75 4.37
163 164 4.360889 TCCGGTTAATAGGTTAGTCCCAA 58.639 43.478 0.00 0.00 36.75 4.12
164 165 4.782156 TCCGGTTAATAGGTTAGTCCCAAA 59.218 41.667 0.00 0.00 36.75 3.28
165 166 5.250313 TCCGGTTAATAGGTTAGTCCCAAAA 59.750 40.000 0.00 0.00 36.75 2.44
166 167 5.945191 CCGGTTAATAGGTTAGTCCCAAAAA 59.055 40.000 0.00 0.00 36.75 1.94
167 168 6.604396 CCGGTTAATAGGTTAGTCCCAAAAAT 59.396 38.462 0.00 0.00 36.75 1.82
168 169 7.774625 CCGGTTAATAGGTTAGTCCCAAAAATA 59.225 37.037 0.00 0.00 36.75 1.40
169 170 9.176460 CGGTTAATAGGTTAGTCCCAAAAATAA 57.824 33.333 0.00 0.00 36.75 1.40
200 201 8.838649 AAGTGGAAAATAAAGCCCAATATAGT 57.161 30.769 0.00 0.00 0.00 2.12
201 202 8.465273 AGTGGAAAATAAAGCCCAATATAGTC 57.535 34.615 0.00 0.00 0.00 2.59
202 203 7.505923 AGTGGAAAATAAAGCCCAATATAGTCC 59.494 37.037 0.00 0.00 0.00 3.85
203 204 7.286775 GTGGAAAATAAAGCCCAATATAGTCCA 59.713 37.037 0.00 0.00 0.00 4.02
204 205 7.841729 TGGAAAATAAAGCCCAATATAGTCCAA 59.158 33.333 0.00 0.00 28.89 3.53
205 206 8.700973 GGAAAATAAAGCCCAATATAGTCCAAA 58.299 33.333 0.00 0.00 0.00 3.28
207 208 9.884636 AAAATAAAGCCCAATATAGTCCAAAAC 57.115 29.630 0.00 0.00 0.00 2.43
208 209 8.602472 AATAAAGCCCAATATAGTCCAAAACA 57.398 30.769 0.00 0.00 0.00 2.83
209 210 6.530019 AAAGCCCAATATAGTCCAAAACAG 57.470 37.500 0.00 0.00 0.00 3.16
210 211 5.193099 AGCCCAATATAGTCCAAAACAGT 57.807 39.130 0.00 0.00 0.00 3.55
211 212 6.321821 AGCCCAATATAGTCCAAAACAGTA 57.678 37.500 0.00 0.00 0.00 2.74
212 213 6.357367 AGCCCAATATAGTCCAAAACAGTAG 58.643 40.000 0.00 0.00 0.00 2.57
213 214 6.157994 AGCCCAATATAGTCCAAAACAGTAGA 59.842 38.462 0.00 0.00 0.00 2.59
214 215 6.998673 GCCCAATATAGTCCAAAACAGTAGAT 59.001 38.462 0.00 0.00 0.00 1.98
215 216 8.154856 GCCCAATATAGTCCAAAACAGTAGATA 58.845 37.037 0.00 0.00 0.00 1.98
222 223 9.819267 ATAGTCCAAAACAGTAGATAAAGTAGC 57.181 33.333 0.00 0.00 0.00 3.58
223 224 7.676947 AGTCCAAAACAGTAGATAAAGTAGCA 58.323 34.615 0.00 0.00 0.00 3.49
224 225 8.322091 AGTCCAAAACAGTAGATAAAGTAGCAT 58.678 33.333 0.00 0.00 0.00 3.79
225 226 8.391106 GTCCAAAACAGTAGATAAAGTAGCATG 58.609 37.037 0.00 0.00 0.00 4.06
226 227 7.552687 TCCAAAACAGTAGATAAAGTAGCATGG 59.447 37.037 0.00 0.00 0.00 3.66
227 228 7.552687 CCAAAACAGTAGATAAAGTAGCATGGA 59.447 37.037 0.00 0.00 0.00 3.41
228 229 8.607459 CAAAACAGTAGATAAAGTAGCATGGAG 58.393 37.037 0.00 0.00 0.00 3.86
229 230 5.848406 ACAGTAGATAAAGTAGCATGGAGC 58.152 41.667 0.00 0.00 46.19 4.70
244 245 6.340537 GCATGGAGCAATCAAAAATTACAG 57.659 37.500 0.00 0.00 44.79 2.74
245 246 6.101332 GCATGGAGCAATCAAAAATTACAGA 58.899 36.000 0.00 0.00 44.79 3.41
246 247 6.759827 GCATGGAGCAATCAAAAATTACAGAT 59.240 34.615 0.00 0.00 44.79 2.90
247 248 7.922278 GCATGGAGCAATCAAAAATTACAGATA 59.078 33.333 0.00 0.00 44.79 1.98
248 249 9.241317 CATGGAGCAATCAAAAATTACAGATAC 57.759 33.333 0.00 0.00 0.00 2.24
249 250 7.471721 TGGAGCAATCAAAAATTACAGATACG 58.528 34.615 0.00 0.00 0.00 3.06
250 251 7.120579 TGGAGCAATCAAAAATTACAGATACGT 59.879 33.333 0.00 0.00 0.00 3.57
251 252 7.968405 GGAGCAATCAAAAATTACAGATACGTT 59.032 33.333 0.00 0.00 0.00 3.99
252 253 8.673626 AGCAATCAAAAATTACAGATACGTTG 57.326 30.769 0.00 0.00 0.00 4.10
253 254 7.754924 AGCAATCAAAAATTACAGATACGTTGG 59.245 33.333 0.00 0.00 0.00 3.77
254 255 7.753132 GCAATCAAAAATTACAGATACGTTGGA 59.247 33.333 0.00 0.00 0.00 3.53
255 256 9.277565 CAATCAAAAATTACAGATACGTTGGAG 57.722 33.333 0.00 0.00 0.00 3.86
256 257 8.786826 ATCAAAAATTACAGATACGTTGGAGA 57.213 30.769 0.00 0.00 0.00 3.71
257 258 8.025243 TCAAAAATTACAGATACGTTGGAGAC 57.975 34.615 0.00 0.00 0.00 3.36
299 300 3.041940 GGCGACACCTGTTGACGG 61.042 66.667 0.00 0.00 42.68 4.79
311 312 2.579657 TTGACGGCGACATGGAGGT 61.580 57.895 16.62 0.00 0.00 3.85
327 328 2.271800 GAGGTGACGGTGATGTGATTC 58.728 52.381 0.00 0.00 0.00 2.52
335 336 2.432444 GGTGATGTGATTCGGGTTTGA 58.568 47.619 0.00 0.00 0.00 2.69
354 355 6.215845 GTTTGATTTTTGTGGCTAGATGTGT 58.784 36.000 0.00 0.00 0.00 3.72
357 358 5.647658 TGATTTTTGTGGCTAGATGTGTAGG 59.352 40.000 0.00 0.00 0.00 3.18
361 362 4.202245 TGTGGCTAGATGTGTAGGAAAC 57.798 45.455 0.00 0.00 0.00 2.78
377 378 2.930682 GGAAACAGGTCGCTCTGATTAC 59.069 50.000 10.94 3.76 38.11 1.89
488 490 4.319177 ACAAGAAGAGGAAACCGATTCAG 58.681 43.478 0.00 0.00 39.98 3.02
495 497 2.576191 AGGAAACCGATTCAGGGATTCA 59.424 45.455 3.74 0.00 39.98 2.57
507 509 4.651778 TCAGGGATTCAGTTGTTACAAGG 58.348 43.478 0.00 0.00 0.00 3.61
597 599 2.450609 TTCTAACAGCCGTGACTTCC 57.549 50.000 0.00 0.00 0.00 3.46
612 614 1.028905 CTTCCTTGCCGAACCAAACA 58.971 50.000 0.00 0.00 0.00 2.83
663 665 1.732259 AGGCGATTGTAACTTTCAGCG 59.268 47.619 0.00 0.00 0.00 5.18
689 691 3.753797 GCTCTTCGATTTTGTTTCCCTCT 59.246 43.478 0.00 0.00 0.00 3.69
751 753 1.806247 GCTTGGAAACGGCAAAAGCTT 60.806 47.619 0.00 0.00 40.04 3.74
831 838 3.842923 CCGCGCCATCACTCTCCT 61.843 66.667 0.00 0.00 0.00 3.69
850 857 0.385751 TGGATCGAGATCTTGACCGC 59.614 55.000 15.14 7.64 37.92 5.68
960 990 1.493022 CCGTTCCCCTCCAAATCCATA 59.507 52.381 0.00 0.00 0.00 2.74
974 1004 2.438868 TCCATACGATCCAATCTGCG 57.561 50.000 0.00 0.00 0.00 5.18
987 1029 1.557269 ATCTGCGCCAAGGAAGGAGT 61.557 55.000 4.18 0.00 0.00 3.85
991 1033 0.036294 GCGCCAAGGAAGGAGTAAGT 60.036 55.000 0.00 0.00 0.00 2.24
1009 1051 2.047274 CGTTGACCATGTCCGGCT 60.047 61.111 0.00 0.00 0.00 5.52
1167 1209 0.545171 TCATCTACGAGGAGACCCGT 59.455 55.000 0.00 0.00 42.15 5.28
1169 1211 0.545171 ATCTACGAGGAGACCCGTGA 59.455 55.000 12.06 8.97 39.54 4.35
1275 1400 2.486322 CGTCGTCTACGCGCTCAAC 61.486 63.158 5.73 0.00 46.10 3.18
1345 1485 2.125753 GCTGCTCCGTCCAGTCTG 60.126 66.667 0.00 0.00 32.93 3.51
1368 1509 1.118965 TCCCGCTGTTCCTGTCTTCA 61.119 55.000 0.00 0.00 0.00 3.02
1388 1529 7.174946 GTCTTCATGTGGGTTTCTGAAATTCTA 59.825 37.037 6.06 0.00 0.00 2.10
1393 1534 6.126409 TGTGGGTTTCTGAAATTCTAAGTGT 58.874 36.000 6.06 0.00 0.00 3.55
1455 1596 7.738437 ATGGAATGGAATAGAATTGTTGGTT 57.262 32.000 0.00 0.00 0.00 3.67
1464 1605 3.482436 AGAATTGTTGGTTCTTGCGGTA 58.518 40.909 0.00 0.00 32.17 4.02
1477 1618 1.593196 TGCGGTATTATCTTGGCTGC 58.407 50.000 0.00 0.00 0.00 5.25
1482 1623 3.434641 CGGTATTATCTTGGCTGCATCTG 59.565 47.826 0.50 0.00 0.00 2.90
1503 1644 7.827819 TCTGTCTACATGAAAGTAATTTCCG 57.172 36.000 12.73 6.87 31.90 4.30
1512 1653 7.444183 ACATGAAAGTAATTTCCGTCTCAGAAA 59.556 33.333 12.73 0.00 37.61 2.52
1549 1690 4.905836 CGCGGTAAAAACGTGCTT 57.094 50.000 0.00 0.00 34.95 3.91
1551 1692 1.583668 CGCGGTAAAAACGTGCTTAC 58.416 50.000 0.00 10.24 34.95 2.34
1552 1693 1.192980 CGCGGTAAAAACGTGCTTACT 59.807 47.619 15.70 0.00 34.95 2.24
1553 1694 2.348779 CGCGGTAAAAACGTGCTTACTT 60.349 45.455 15.70 0.00 34.95 2.24
1554 1695 2.968655 GCGGTAAAAACGTGCTTACTTG 59.031 45.455 15.70 11.40 0.00 3.16
1555 1696 3.303263 GCGGTAAAAACGTGCTTACTTGA 60.303 43.478 15.70 0.00 0.00 3.02
1556 1697 4.785975 GCGGTAAAAACGTGCTTACTTGAA 60.786 41.667 15.70 0.00 0.00 2.69
1557 1698 4.901881 CGGTAAAAACGTGCTTACTTGAAG 59.098 41.667 15.70 0.00 38.30 3.02
1558 1699 5.209977 GGTAAAAACGTGCTTACTTGAAGG 58.790 41.667 15.70 0.00 35.49 3.46
1559 1700 3.349488 AAAACGTGCTTACTTGAAGGC 57.651 42.857 0.00 0.00 35.49 4.35
1560 1701 2.256117 AACGTGCTTACTTGAAGGCT 57.744 45.000 0.00 0.00 35.49 4.58
1561 1702 3.396260 AACGTGCTTACTTGAAGGCTA 57.604 42.857 0.00 0.00 35.49 3.93
1562 1703 3.396260 ACGTGCTTACTTGAAGGCTAA 57.604 42.857 0.00 0.00 35.49 3.09
1563 1704 3.326747 ACGTGCTTACTTGAAGGCTAAG 58.673 45.455 0.00 0.00 35.49 2.18
1564 1705 2.673368 CGTGCTTACTTGAAGGCTAAGG 59.327 50.000 0.00 0.00 35.49 2.69
1565 1706 3.616560 CGTGCTTACTTGAAGGCTAAGGA 60.617 47.826 0.00 0.00 35.49 3.36
1566 1707 3.685272 GTGCTTACTTGAAGGCTAAGGAC 59.315 47.826 10.03 10.03 35.49 3.85
1567 1708 2.930682 GCTTACTTGAAGGCTAAGGACG 59.069 50.000 0.00 0.00 35.49 4.79
1572 1713 5.615925 ACTTGAAGGCTAAGGACGAATAT 57.384 39.130 0.00 0.00 0.00 1.28
1573 1714 5.360591 ACTTGAAGGCTAAGGACGAATATG 58.639 41.667 0.00 0.00 0.00 1.78
1578 1719 2.897969 GGCTAAGGACGAATATGAGGGA 59.102 50.000 0.00 0.00 0.00 4.20
1583 1724 4.186077 AGGACGAATATGAGGGAGAGAA 57.814 45.455 0.00 0.00 0.00 2.87
1586 1727 3.235200 ACGAATATGAGGGAGAGAAGGG 58.765 50.000 0.00 0.00 0.00 3.95
1599 1740 3.323775 AGAGAAGGGTACAAGGGTCAAA 58.676 45.455 0.00 0.00 0.00 2.69
1600 1741 3.328050 AGAGAAGGGTACAAGGGTCAAAG 59.672 47.826 0.00 0.00 0.00 2.77
1616 1757 1.526464 CAAAGAACCCAAAATGCACGC 59.474 47.619 0.00 0.00 0.00 5.34
1619 1760 0.667184 GAACCCAAAATGCACGCAGG 60.667 55.000 0.00 0.00 0.00 4.85
1627 1768 2.661997 TGCACGCAGGCATACAGA 59.338 55.556 0.00 0.00 39.25 3.41
1629 1770 2.176273 GCACGCAGGCATACAGAGG 61.176 63.158 0.00 0.00 0.00 3.69
1632 1773 2.735772 CGCAGGCATACAGAGGGGT 61.736 63.158 0.00 0.00 0.00 4.95
1633 1774 1.147153 GCAGGCATACAGAGGGGTC 59.853 63.158 0.00 0.00 0.00 4.46
1634 1775 1.832912 CAGGCATACAGAGGGGTCC 59.167 63.158 0.00 0.00 0.00 4.46
1635 1776 1.762460 AGGCATACAGAGGGGTCCG 60.762 63.158 0.00 0.00 0.00 4.79
1636 1777 2.808206 GGCATACAGAGGGGTCCGG 61.808 68.421 0.00 0.00 0.00 5.14
1638 1779 2.446036 ATACAGAGGGGTCCGGGC 60.446 66.667 0.00 0.00 0.00 6.13
1639 1780 3.326385 ATACAGAGGGGTCCGGGCA 62.326 63.158 9.07 0.00 0.00 5.36
1640 1781 3.976490 TACAGAGGGGTCCGGGCAG 62.976 68.421 9.07 0.00 0.00 4.85
1652 1793 4.815108 GGGCAGCCGGGGTAAAGG 62.815 72.222 5.00 0.00 0.00 3.11
1653 1794 4.815108 GGCAGCCGGGGTAAAGGG 62.815 72.222 2.18 0.00 0.00 3.95
1654 1795 4.815108 GCAGCCGGGGTAAAGGGG 62.815 72.222 2.18 0.00 0.00 4.79
1655 1796 4.815108 CAGCCGGGGTAAAGGGGC 62.815 72.222 2.18 0.00 45.91 5.80
1681 1822 3.390521 CCAGAGGTGGTGCGGCTA 61.391 66.667 0.00 0.00 39.30 3.93
1682 1823 2.735772 CCAGAGGTGGTGCGGCTAT 61.736 63.158 0.00 0.00 39.30 2.97
1683 1824 1.399744 CCAGAGGTGGTGCGGCTATA 61.400 60.000 0.00 0.00 39.30 1.31
1684 1825 0.032678 CAGAGGTGGTGCGGCTATAG 59.967 60.000 0.00 0.00 0.00 1.31
1685 1826 1.115930 AGAGGTGGTGCGGCTATAGG 61.116 60.000 0.00 0.00 0.00 2.57
1686 1827 1.382695 AGGTGGTGCGGCTATAGGT 60.383 57.895 0.00 0.00 0.00 3.08
1687 1828 1.227556 GGTGGTGCGGCTATAGGTG 60.228 63.158 0.00 0.00 0.00 4.00
1688 1829 1.227556 GTGGTGCGGCTATAGGTGG 60.228 63.158 0.00 0.00 0.00 4.61
1689 1830 2.280865 GGTGCGGCTATAGGTGGC 60.281 66.667 0.00 0.00 0.00 5.01
1694 1835 4.331067 GGCTATAGGTGGCCGGGC 62.331 72.222 23.42 23.42 42.46 6.13
1695 1836 3.556306 GCTATAGGTGGCCGGGCA 61.556 66.667 29.27 29.27 0.00 5.36
1696 1837 2.426023 CTATAGGTGGCCGGGCAC 59.574 66.667 44.03 44.03 0.00 5.01
1738 1879 3.941188 CGGAGGTGGTGTGGCTGT 61.941 66.667 0.00 0.00 0.00 4.40
1742 1883 1.461461 AGGTGGTGTGGCTGTAGGT 60.461 57.895 0.00 0.00 0.00 3.08
1744 1885 1.302511 GTGGTGTGGCTGTAGGTGG 60.303 63.158 0.00 0.00 0.00 4.61
1752 1893 4.028490 CTGTAGGTGGCCGGGCAA 62.028 66.667 34.51 15.53 0.00 4.52
2095 2370 4.056125 CTGTGGCTGCGAGTCCGA 62.056 66.667 0.00 0.00 38.22 4.55
2116 2391 0.398664 CACCCGGGGTCCTTCTATCT 60.399 60.000 27.92 0.00 31.02 1.98
2163 2438 0.667487 TTCCTTCGCACTTCTCGCTG 60.667 55.000 0.00 0.00 0.00 5.18
2168 2443 1.070821 TCGCACTTCTCGCTGATTTG 58.929 50.000 0.00 0.00 0.00 2.32
2183 2458 4.319177 CTGATTTGTTCCTTCTCCTCGTT 58.681 43.478 0.00 0.00 0.00 3.85
2233 2508 4.579340 CCTCTTCATGATCATCACTTTGGG 59.421 45.833 4.86 0.00 0.00 4.12
2301 2576 4.143543 TGTGTGAATTTGAATGGAGCTCA 58.856 39.130 17.19 1.87 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.007359 AGGAGACTTGGACCCTACTCC 59.993 57.143 12.99 12.99 42.64 3.85
2 3 2.104170 CAGGAGACTTGGACCCTACTC 58.896 57.143 0.00 0.00 40.21 2.59
5 6 1.089978 TCCAGGAGACTTGGACCCTA 58.910 55.000 0.00 0.00 40.21 3.53
7 8 0.833949 GATCCAGGAGACTTGGACCC 59.166 60.000 4.82 0.00 39.42 4.46
9 10 1.134965 CGTGATCCAGGAGACTTGGAC 60.135 57.143 4.82 1.48 39.42 4.02
10 11 1.186200 CGTGATCCAGGAGACTTGGA 58.814 55.000 5.16 5.16 40.21 3.53
11 12 0.898320 ACGTGATCCAGGAGACTTGG 59.102 55.000 0.00 0.00 40.21 3.61
12 13 2.611518 GAACGTGATCCAGGAGACTTG 58.388 52.381 0.00 0.00 40.21 3.16
13 14 1.202582 CGAACGTGATCCAGGAGACTT 59.797 52.381 0.00 0.00 40.21 3.01
14 15 0.811915 CGAACGTGATCCAGGAGACT 59.188 55.000 0.00 0.00 46.44 3.24
15 16 0.179134 CCGAACGTGATCCAGGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
16 17 0.611062 ACCGAACGTGATCCAGGAGA 60.611 55.000 0.00 0.00 0.00 3.71
17 18 0.458543 CACCGAACGTGATCCAGGAG 60.459 60.000 0.00 0.00 46.20 3.69
18 19 0.896479 TCACCGAACGTGATCCAGGA 60.896 55.000 0.00 0.00 46.80 3.86
19 20 1.589630 TCACCGAACGTGATCCAGG 59.410 57.895 0.00 0.00 46.80 4.45
35 36 5.123227 ACCTTCAGAAACGTGATTTTCTCA 58.877 37.500 0.00 0.00 42.74 3.27
36 37 5.674933 ACCTTCAGAAACGTGATTTTCTC 57.325 39.130 0.00 0.00 42.74 2.87
37 38 6.094881 TGAAACCTTCAGAAACGTGATTTTCT 59.905 34.615 0.00 0.00 44.98 2.52
38 39 6.262601 TGAAACCTTCAGAAACGTGATTTTC 58.737 36.000 0.00 0.00 34.08 2.29
39 40 6.202516 TGAAACCTTCAGAAACGTGATTTT 57.797 33.333 0.00 0.00 34.08 1.82
40 41 5.828299 TGAAACCTTCAGAAACGTGATTT 57.172 34.783 0.00 0.00 34.08 2.17
41 42 6.391227 AATGAAACCTTCAGAAACGTGATT 57.609 33.333 0.00 0.00 43.98 2.57
42 43 5.048713 GGAATGAAACCTTCAGAAACGTGAT 60.049 40.000 0.00 0.00 43.98 3.06
43 44 4.274950 GGAATGAAACCTTCAGAAACGTGA 59.725 41.667 0.00 0.00 43.98 4.35
44 45 4.537015 GGAATGAAACCTTCAGAAACGTG 58.463 43.478 0.00 0.00 43.98 4.49
45 46 3.250040 CGGAATGAAACCTTCAGAAACGT 59.750 43.478 0.00 0.00 43.98 3.99
46 47 3.250040 ACGGAATGAAACCTTCAGAAACG 59.750 43.478 0.00 0.00 43.98 3.60
47 48 4.830826 ACGGAATGAAACCTTCAGAAAC 57.169 40.909 0.00 0.00 43.98 2.78
48 49 5.451242 CCAAACGGAATGAAACCTTCAGAAA 60.451 40.000 0.00 0.00 43.98 2.52
49 50 4.037446 CCAAACGGAATGAAACCTTCAGAA 59.963 41.667 0.00 0.00 43.98 3.02
50 51 3.568007 CCAAACGGAATGAAACCTTCAGA 59.432 43.478 0.00 0.00 43.98 3.27
51 52 3.568007 TCCAAACGGAATGAAACCTTCAG 59.432 43.478 0.00 0.00 43.98 3.02
52 53 3.316868 GTCCAAACGGAATGAAACCTTCA 59.683 43.478 0.00 0.00 45.01 3.02
53 54 3.568430 AGTCCAAACGGAATGAAACCTTC 59.432 43.478 0.00 0.00 33.16 3.46
54 55 3.562182 AGTCCAAACGGAATGAAACCTT 58.438 40.909 0.00 0.00 33.16 3.50
55 56 3.146847 GAGTCCAAACGGAATGAAACCT 58.853 45.455 0.00 0.00 33.16 3.50
56 57 2.228103 GGAGTCCAAACGGAATGAAACC 59.772 50.000 3.60 0.00 33.16 3.27
57 58 2.095919 CGGAGTCCAAACGGAATGAAAC 60.096 50.000 10.49 0.00 33.16 2.78
58 59 2.147958 CGGAGTCCAAACGGAATGAAA 58.852 47.619 10.49 0.00 33.16 2.69
59 60 1.071071 ACGGAGTCCAAACGGAATGAA 59.929 47.619 10.49 0.00 29.74 2.57
60 61 0.682852 ACGGAGTCCAAACGGAATGA 59.317 50.000 10.49 0.00 29.74 2.57
61 62 1.519408 AACGGAGTCCAAACGGAATG 58.481 50.000 10.49 0.00 45.00 2.67
62 63 1.877443 CAAACGGAGTCCAAACGGAAT 59.123 47.619 10.49 0.00 45.00 3.01
63 64 1.134461 TCAAACGGAGTCCAAACGGAA 60.134 47.619 10.49 0.00 45.00 4.30
64 65 0.464870 TCAAACGGAGTCCAAACGGA 59.535 50.000 10.49 0.00 45.00 4.69
65 66 1.519408 ATCAAACGGAGTCCAAACGG 58.481 50.000 10.49 0.00 45.00 4.44
66 67 4.201783 GGAATATCAAACGGAGTCCAAACG 60.202 45.833 10.49 0.00 45.00 3.60
67 68 4.201783 CGGAATATCAAACGGAGTCCAAAC 60.202 45.833 10.49 0.00 45.00 2.93
68 69 3.936453 CGGAATATCAAACGGAGTCCAAA 59.064 43.478 10.49 0.00 45.00 3.28
69 70 3.055675 ACGGAATATCAAACGGAGTCCAA 60.056 43.478 10.49 0.00 45.00 3.53
70 71 2.498481 ACGGAATATCAAACGGAGTCCA 59.502 45.455 10.49 0.00 45.00 4.02
71 72 3.175109 ACGGAATATCAAACGGAGTCC 57.825 47.619 0.00 0.00 45.00 3.85
72 73 4.868734 AGAAACGGAATATCAAACGGAGTC 59.131 41.667 0.00 0.00 45.00 3.36
74 75 5.500290 CGAAGAAACGGAATATCAAACGGAG 60.500 44.000 0.00 0.00 0.00 4.63
75 76 4.327898 CGAAGAAACGGAATATCAAACGGA 59.672 41.667 0.00 0.00 0.00 4.69
76 77 4.327898 TCGAAGAAACGGAATATCAAACGG 59.672 41.667 0.00 0.00 0.00 4.44
77 78 5.444586 TCGAAGAAACGGAATATCAAACG 57.555 39.130 0.00 0.00 0.00 3.60
78 79 7.059147 GTGTTTCGAAGAAACGGAATATCAAAC 59.941 37.037 17.36 5.75 45.90 2.93
79 80 7.041644 AGTGTTTCGAAGAAACGGAATATCAAA 60.042 33.333 17.36 0.00 45.90 2.69
80 81 6.425721 AGTGTTTCGAAGAAACGGAATATCAA 59.574 34.615 17.36 0.00 45.90 2.57
81 82 5.929992 AGTGTTTCGAAGAAACGGAATATCA 59.070 36.000 17.36 0.00 45.90 2.15
82 83 6.090358 TCAGTGTTTCGAAGAAACGGAATATC 59.910 38.462 17.36 5.55 45.90 1.63
83 84 5.929992 TCAGTGTTTCGAAGAAACGGAATAT 59.070 36.000 17.36 1.57 45.90 1.28
84 85 5.291178 TCAGTGTTTCGAAGAAACGGAATA 58.709 37.500 17.36 1.16 45.90 1.75
85 86 4.124238 TCAGTGTTTCGAAGAAACGGAAT 58.876 39.130 17.36 1.86 45.90 3.01
86 87 3.523547 TCAGTGTTTCGAAGAAACGGAA 58.476 40.909 17.36 1.77 45.90 4.30
87 88 3.167921 TCAGTGTTTCGAAGAAACGGA 57.832 42.857 17.36 12.90 45.90 4.69
88 89 3.936902 TTCAGTGTTTCGAAGAAACGG 57.063 42.857 17.36 11.27 45.90 4.44
89 90 6.071463 CCTATTTCAGTGTTTCGAAGAAACG 58.929 40.000 17.36 6.85 45.90 3.60
90 91 6.204108 TCCCTATTTCAGTGTTTCGAAGAAAC 59.796 38.462 16.17 16.17 45.90 2.78
91 92 6.292923 TCCCTATTTCAGTGTTTCGAAGAAA 58.707 36.000 10.72 10.72 45.90 2.52
92 93 5.860611 TCCCTATTTCAGTGTTTCGAAGAA 58.139 37.500 0.00 0.00 45.90 2.52
93 94 5.477607 TCCCTATTTCAGTGTTTCGAAGA 57.522 39.130 0.00 0.00 0.00 2.87
94 95 6.554334 TTTCCCTATTTCAGTGTTTCGAAG 57.446 37.500 0.00 0.00 0.00 3.79
95 96 6.945938 TTTTCCCTATTTCAGTGTTTCGAA 57.054 33.333 0.00 0.00 0.00 3.71
96 97 6.945938 TTTTTCCCTATTTCAGTGTTTCGA 57.054 33.333 0.00 0.00 0.00 3.71
116 117 4.206375 CCCAGCCCAGAATTTTTGTTTTT 58.794 39.130 0.00 0.00 0.00 1.94
117 118 3.819368 CCCAGCCCAGAATTTTTGTTTT 58.181 40.909 0.00 0.00 0.00 2.43
118 119 2.487086 GCCCAGCCCAGAATTTTTGTTT 60.487 45.455 0.00 0.00 0.00 2.83
119 120 1.072173 GCCCAGCCCAGAATTTTTGTT 59.928 47.619 0.00 0.00 0.00 2.83
120 121 0.686789 GCCCAGCCCAGAATTTTTGT 59.313 50.000 0.00 0.00 0.00 2.83
121 122 0.036105 GGCCCAGCCCAGAATTTTTG 60.036 55.000 0.00 0.00 44.06 2.44
122 123 2.376063 GGCCCAGCCCAGAATTTTT 58.624 52.632 0.00 0.00 44.06 1.94
123 124 4.135293 GGCCCAGCCCAGAATTTT 57.865 55.556 0.00 0.00 44.06 1.82
137 138 6.309757 GGACTAACCTATTAACCGGAGGCC 62.310 54.167 9.46 0.00 44.44 5.19
138 139 3.244009 GGACTAACCTATTAACCGGAGGC 60.244 52.174 9.46 0.00 44.44 4.70
139 140 4.597404 GGACTAACCTATTAACCGGAGG 57.403 50.000 9.46 6.51 45.59 4.30
140 141 3.962718 TGGGACTAACCTATTAACCGGAG 59.037 47.826 9.46 0.00 38.98 4.63
141 142 3.992999 TGGGACTAACCTATTAACCGGA 58.007 45.455 9.46 0.00 38.98 5.14
142 143 4.758773 TTGGGACTAACCTATTAACCGG 57.241 45.455 0.00 0.00 38.98 5.28
143 144 7.634671 ATTTTTGGGACTAACCTATTAACCG 57.365 36.000 0.00 0.00 38.98 4.44
174 175 9.267071 ACTATATTGGGCTTTATTTTCCACTTT 57.733 29.630 0.00 0.00 0.00 2.66
175 176 8.838649 ACTATATTGGGCTTTATTTTCCACTT 57.161 30.769 0.00 0.00 0.00 3.16
176 177 7.505923 GGACTATATTGGGCTTTATTTTCCACT 59.494 37.037 0.00 0.00 0.00 4.00
177 178 7.286775 TGGACTATATTGGGCTTTATTTTCCAC 59.713 37.037 0.00 0.00 0.00 4.02
178 179 7.358263 TGGACTATATTGGGCTTTATTTTCCA 58.642 34.615 0.00 0.00 0.00 3.53
179 180 7.833285 TGGACTATATTGGGCTTTATTTTCC 57.167 36.000 0.00 0.00 0.00 3.13
181 182 9.884636 GTTTTGGACTATATTGGGCTTTATTTT 57.115 29.630 0.00 0.00 0.00 1.82
182 183 9.041354 TGTTTTGGACTATATTGGGCTTTATTT 57.959 29.630 0.00 0.00 0.00 1.40
183 184 8.602472 TGTTTTGGACTATATTGGGCTTTATT 57.398 30.769 0.00 0.00 0.00 1.40
184 185 7.839200 ACTGTTTTGGACTATATTGGGCTTTAT 59.161 33.333 0.00 0.00 0.00 1.40
185 186 7.179269 ACTGTTTTGGACTATATTGGGCTTTA 58.821 34.615 0.00 0.00 0.00 1.85
186 187 6.016555 ACTGTTTTGGACTATATTGGGCTTT 58.983 36.000 0.00 0.00 0.00 3.51
187 188 5.580022 ACTGTTTTGGACTATATTGGGCTT 58.420 37.500 0.00 0.00 0.00 4.35
188 189 5.193099 ACTGTTTTGGACTATATTGGGCT 57.807 39.130 0.00 0.00 0.00 5.19
189 190 6.354130 TCTACTGTTTTGGACTATATTGGGC 58.646 40.000 0.00 0.00 0.00 5.36
196 197 9.819267 GCTACTTTATCTACTGTTTTGGACTAT 57.181 33.333 0.00 0.00 0.00 2.12
197 198 8.809066 TGCTACTTTATCTACTGTTTTGGACTA 58.191 33.333 0.00 0.00 0.00 2.59
198 199 7.676947 TGCTACTTTATCTACTGTTTTGGACT 58.323 34.615 0.00 0.00 0.00 3.85
199 200 7.900782 TGCTACTTTATCTACTGTTTTGGAC 57.099 36.000 0.00 0.00 0.00 4.02
200 201 7.552687 CCATGCTACTTTATCTACTGTTTTGGA 59.447 37.037 0.00 0.00 0.00 3.53
201 202 7.552687 TCCATGCTACTTTATCTACTGTTTTGG 59.447 37.037 0.00 0.00 0.00 3.28
202 203 8.492673 TCCATGCTACTTTATCTACTGTTTTG 57.507 34.615 0.00 0.00 0.00 2.44
203 204 7.281100 GCTCCATGCTACTTTATCTACTGTTTT 59.719 37.037 0.00 0.00 38.95 2.43
204 205 6.763610 GCTCCATGCTACTTTATCTACTGTTT 59.236 38.462 0.00 0.00 38.95 2.83
205 206 6.127054 TGCTCCATGCTACTTTATCTACTGTT 60.127 38.462 0.00 0.00 43.37 3.16
206 207 5.363868 TGCTCCATGCTACTTTATCTACTGT 59.636 40.000 0.00 0.00 43.37 3.55
207 208 5.847304 TGCTCCATGCTACTTTATCTACTG 58.153 41.667 0.00 0.00 43.37 2.74
208 209 6.485830 TTGCTCCATGCTACTTTATCTACT 57.514 37.500 0.00 0.00 43.37 2.57
209 210 6.931281 TGATTGCTCCATGCTACTTTATCTAC 59.069 38.462 0.00 0.00 43.37 2.59
210 211 7.066307 TGATTGCTCCATGCTACTTTATCTA 57.934 36.000 0.00 0.00 43.37 1.98
211 212 5.933617 TGATTGCTCCATGCTACTTTATCT 58.066 37.500 0.00 0.00 43.37 1.98
212 213 6.624352 TTGATTGCTCCATGCTACTTTATC 57.376 37.500 0.00 0.00 43.37 1.75
213 214 7.408756 TTTTGATTGCTCCATGCTACTTTAT 57.591 32.000 0.00 0.00 43.37 1.40
214 215 6.832520 TTTTGATTGCTCCATGCTACTTTA 57.167 33.333 0.00 0.00 43.37 1.85
215 216 5.726980 TTTTGATTGCTCCATGCTACTTT 57.273 34.783 0.00 0.00 43.37 2.66
216 217 5.726980 TTTTTGATTGCTCCATGCTACTT 57.273 34.783 0.00 0.00 43.37 2.24
217 218 5.927281 ATTTTTGATTGCTCCATGCTACT 57.073 34.783 0.00 0.00 43.37 2.57
218 219 7.035004 TGTAATTTTTGATTGCTCCATGCTAC 58.965 34.615 0.00 0.00 43.37 3.58
219 220 7.122501 TCTGTAATTTTTGATTGCTCCATGCTA 59.877 33.333 0.00 0.00 43.37 3.49
220 221 6.040209 TGTAATTTTTGATTGCTCCATGCT 57.960 33.333 0.00 0.00 43.37 3.79
221 222 6.101332 TCTGTAATTTTTGATTGCTCCATGC 58.899 36.000 0.00 0.00 43.25 4.06
222 223 9.241317 GTATCTGTAATTTTTGATTGCTCCATG 57.759 33.333 0.00 0.00 0.00 3.66
223 224 8.131100 CGTATCTGTAATTTTTGATTGCTCCAT 58.869 33.333 0.00 0.00 0.00 3.41
224 225 7.120579 ACGTATCTGTAATTTTTGATTGCTCCA 59.879 33.333 0.00 0.00 0.00 3.86
225 226 7.472543 ACGTATCTGTAATTTTTGATTGCTCC 58.527 34.615 0.00 0.00 0.00 4.70
226 227 8.788813 CAACGTATCTGTAATTTTTGATTGCTC 58.211 33.333 0.00 0.00 0.00 4.26
227 228 7.754924 CCAACGTATCTGTAATTTTTGATTGCT 59.245 33.333 0.00 0.00 0.00 3.91
228 229 7.753132 TCCAACGTATCTGTAATTTTTGATTGC 59.247 33.333 0.00 0.00 0.00 3.56
229 230 9.277565 CTCCAACGTATCTGTAATTTTTGATTG 57.722 33.333 0.00 0.00 0.00 2.67
230 231 9.226606 TCTCCAACGTATCTGTAATTTTTGATT 57.773 29.630 0.00 0.00 0.00 2.57
231 232 8.665685 GTCTCCAACGTATCTGTAATTTTTGAT 58.334 33.333 0.00 0.00 0.00 2.57
232 233 7.148705 CGTCTCCAACGTATCTGTAATTTTTGA 60.149 37.037 0.00 0.00 46.42 2.69
233 234 6.953743 CGTCTCCAACGTATCTGTAATTTTTG 59.046 38.462 0.00 0.00 46.42 2.44
234 235 7.057149 CGTCTCCAACGTATCTGTAATTTTT 57.943 36.000 0.00 0.00 46.42 1.94
235 236 6.642683 CGTCTCCAACGTATCTGTAATTTT 57.357 37.500 0.00 0.00 46.42 1.82
249 250 0.527817 CGCCCTGATACGTCTCCAAC 60.528 60.000 0.00 0.00 0.00 3.77
250 251 1.813859 CGCCCTGATACGTCTCCAA 59.186 57.895 0.00 0.00 0.00 3.53
251 252 2.782222 GCGCCCTGATACGTCTCCA 61.782 63.158 0.00 0.00 0.00 3.86
252 253 2.027751 GCGCCCTGATACGTCTCC 59.972 66.667 0.00 0.00 0.00 3.71
253 254 1.589196 GTGCGCCCTGATACGTCTC 60.589 63.158 4.18 0.00 0.00 3.36
254 255 2.494918 GTGCGCCCTGATACGTCT 59.505 61.111 4.18 0.00 0.00 4.18
255 256 2.585247 GGTGCGCCCTGATACGTC 60.585 66.667 4.45 0.00 0.00 4.34
299 300 2.509336 CCGTCACCTCCATGTCGC 60.509 66.667 0.00 0.00 31.06 5.19
311 312 0.108377 CCCGAATCACATCACCGTCA 60.108 55.000 0.00 0.00 0.00 4.35
327 328 2.524569 AGCCACAAAAATCAAACCCG 57.475 45.000 0.00 0.00 0.00 5.28
335 336 5.815581 TCCTACACATCTAGCCACAAAAAT 58.184 37.500 0.00 0.00 0.00 1.82
354 355 1.919240 TCAGAGCGACCTGTTTCCTA 58.081 50.000 4.74 0.00 35.71 2.94
357 358 2.930682 GGTAATCAGAGCGACCTGTTTC 59.069 50.000 4.74 0.00 35.71 2.78
361 362 2.101415 TCATGGTAATCAGAGCGACCTG 59.899 50.000 0.00 0.00 35.55 4.00
377 378 2.493278 ACGCTTCCCAAATCTTTCATGG 59.507 45.455 0.00 0.00 0.00 3.66
419 420 2.774074 CGTTCAATATAAACCAACGCGC 59.226 45.455 5.73 0.00 34.08 6.86
488 490 4.652822 AGTCCTTGTAACAACTGAATCCC 58.347 43.478 0.00 0.00 0.00 3.85
495 497 3.071167 GTCCAGGAGTCCTTGTAACAACT 59.929 47.826 9.68 0.00 0.00 3.16
507 509 0.736053 CTCGTAGCTGTCCAGGAGTC 59.264 60.000 0.00 0.00 0.00 3.36
597 599 0.591236 CACGTGTTTGGTTCGGCAAG 60.591 55.000 7.58 0.00 0.00 4.01
612 614 9.016438 AGTTCATACCAAATAAATTAACCACGT 57.984 29.630 0.00 0.00 0.00 4.49
646 648 1.463056 TGCCGCTGAAAGTTACAATCG 59.537 47.619 0.00 0.00 35.30 3.34
663 665 2.997485 AACAAAATCGAAGAGCTGCC 57.003 45.000 0.00 0.00 43.63 4.85
672 674 3.780804 TCCAGAGGGAAACAAAATCGA 57.219 42.857 0.00 0.00 41.32 3.59
689 691 2.694213 TCGCTCGTTTCATTTCATCCA 58.306 42.857 0.00 0.00 0.00 3.41
775 777 2.444700 AATTTCGTCCGGTGAGGCGT 62.445 55.000 0.00 0.00 40.77 5.68
831 838 0.385751 GCGGTCAAGATCTCGATCCA 59.614 55.000 5.78 0.00 38.58 3.41
892 911 2.025699 TGGGGAGAAGGGGAATTTAACG 60.026 50.000 0.00 0.00 0.00 3.18
960 990 1.078497 TTGGCGCAGATTGGATCGT 60.078 52.632 10.83 0.00 0.00 3.73
974 1004 1.275573 ACGACTTACTCCTTCCTTGGC 59.724 52.381 0.00 0.00 0.00 4.52
987 1029 1.067425 CCGGACATGGTCAACGACTTA 60.067 52.381 0.00 0.00 33.68 2.24
991 1033 2.047655 GCCGGACATGGTCAACGA 60.048 61.111 5.05 0.00 33.68 3.85
1045 1087 4.697756 CTTCCGGTGGCGCTTGGA 62.698 66.667 7.64 6.87 0.00 3.53
1167 1209 1.895798 AGGAAGATCTTGAGCACGTCA 59.104 47.619 14.00 0.00 0.00 4.35
1169 1211 1.066573 CCAGGAAGATCTTGAGCACGT 60.067 52.381 14.00 0.00 0.00 4.49
1209 1334 1.007336 CGTGCTCGGTGTAGTTGACC 61.007 60.000 0.00 0.00 0.00 4.02
1214 1339 4.065281 GGGCGTGCTCGGTGTAGT 62.065 66.667 10.52 0.00 37.56 2.73
1368 1509 6.777580 ACACTTAGAATTTCAGAAACCCACAT 59.222 34.615 0.00 0.00 0.00 3.21
1388 1529 0.170116 CAACCACAACGCACACACTT 59.830 50.000 0.00 0.00 0.00 3.16
1393 1534 1.100463 AGATGCAACCACAACGCACA 61.100 50.000 0.00 0.00 38.73 4.57
1455 1596 3.466836 CAGCCAAGATAATACCGCAAGA 58.533 45.455 0.00 0.00 43.02 3.02
1464 1605 4.434545 AGACAGATGCAGCCAAGATAAT 57.565 40.909 0.00 0.00 0.00 1.28
1477 1618 8.331022 CGGAAATTACTTTCATGTAGACAGATG 58.669 37.037 7.73 0.00 42.17 2.90
1482 1623 7.544566 TGAGACGGAAATTACTTTCATGTAGAC 59.455 37.037 7.73 2.72 42.17 2.59
1503 1644 6.083925 CGTAGCTGTACAATTTTCTGAGAC 57.916 41.667 0.00 0.00 0.00 3.36
1531 1672 0.110733 TAAGCACGTTTTTACCGCGC 60.111 50.000 0.00 0.00 33.83 6.86
1549 1690 6.322969 TCATATTCGTCCTTAGCCTTCAAGTA 59.677 38.462 0.00 0.00 0.00 2.24
1550 1691 3.983044 ATTCGTCCTTAGCCTTCAAGT 57.017 42.857 0.00 0.00 0.00 3.16
1551 1692 5.601662 TCATATTCGTCCTTAGCCTTCAAG 58.398 41.667 0.00 0.00 0.00 3.02
1552 1693 5.453339 CCTCATATTCGTCCTTAGCCTTCAA 60.453 44.000 0.00 0.00 0.00 2.69
1553 1694 4.039245 CCTCATATTCGTCCTTAGCCTTCA 59.961 45.833 0.00 0.00 0.00 3.02
1554 1695 4.561105 CCTCATATTCGTCCTTAGCCTTC 58.439 47.826 0.00 0.00 0.00 3.46
1555 1696 3.325135 CCCTCATATTCGTCCTTAGCCTT 59.675 47.826 0.00 0.00 0.00 4.35
1556 1697 2.900546 CCCTCATATTCGTCCTTAGCCT 59.099 50.000 0.00 0.00 0.00 4.58
1557 1698 2.897969 TCCCTCATATTCGTCCTTAGCC 59.102 50.000 0.00 0.00 0.00 3.93
1558 1699 3.827302 TCTCCCTCATATTCGTCCTTAGC 59.173 47.826 0.00 0.00 0.00 3.09
1559 1700 5.317808 TCTCTCCCTCATATTCGTCCTTAG 58.682 45.833 0.00 0.00 0.00 2.18
1560 1701 5.320488 TCTCTCCCTCATATTCGTCCTTA 57.680 43.478 0.00 0.00 0.00 2.69
1561 1702 4.186077 TCTCTCCCTCATATTCGTCCTT 57.814 45.455 0.00 0.00 0.00 3.36
1562 1703 3.885976 TCTCTCCCTCATATTCGTCCT 57.114 47.619 0.00 0.00 0.00 3.85
1563 1704 3.257127 CCTTCTCTCCCTCATATTCGTCC 59.743 52.174 0.00 0.00 0.00 4.79
1564 1705 3.257127 CCCTTCTCTCCCTCATATTCGTC 59.743 52.174 0.00 0.00 0.00 4.20
1565 1706 3.235200 CCCTTCTCTCCCTCATATTCGT 58.765 50.000 0.00 0.00 0.00 3.85
1566 1707 3.235200 ACCCTTCTCTCCCTCATATTCG 58.765 50.000 0.00 0.00 0.00 3.34
1567 1708 5.148502 TGTACCCTTCTCTCCCTCATATTC 58.851 45.833 0.00 0.00 0.00 1.75
1572 1713 2.559931 CCTTGTACCCTTCTCTCCCTCA 60.560 54.545 0.00 0.00 0.00 3.86
1573 1714 2.112190 CCTTGTACCCTTCTCTCCCTC 58.888 57.143 0.00 0.00 0.00 4.30
1578 1719 2.715763 TGACCCTTGTACCCTTCTCT 57.284 50.000 0.00 0.00 0.00 3.10
1583 1724 2.107726 GGTTCTTTGACCCTTGTACCCT 59.892 50.000 0.00 0.00 33.41 4.34
1599 1740 0.314935 CTGCGTGCATTTTGGGTTCT 59.685 50.000 0.00 0.00 0.00 3.01
1600 1741 0.667184 CCTGCGTGCATTTTGGGTTC 60.667 55.000 0.00 0.00 0.00 3.62
1616 1757 1.832912 GGACCCCTCTGTATGCCTG 59.167 63.158 0.00 0.00 0.00 4.85
1619 1760 2.808206 CCCGGACCCCTCTGTATGC 61.808 68.421 0.73 0.00 0.00 3.14
1635 1776 4.815108 CCTTTACCCCGGCTGCCC 62.815 72.222 14.12 0.00 0.00 5.36
1636 1777 4.815108 CCCTTTACCCCGGCTGCC 62.815 72.222 9.11 9.11 0.00 4.85
1638 1779 4.815108 GCCCCTTTACCCCGGCTG 62.815 72.222 0.00 0.00 38.41 4.85
1664 1805 1.399744 TATAGCCGCACCACCTCTGG 61.400 60.000 0.00 0.00 44.26 3.86
1665 1806 0.032678 CTATAGCCGCACCACCTCTG 59.967 60.000 0.00 0.00 0.00 3.35
1666 1807 1.115930 CCTATAGCCGCACCACCTCT 61.116 60.000 0.00 0.00 0.00 3.69
1667 1808 1.367840 CCTATAGCCGCACCACCTC 59.632 63.158 0.00 0.00 0.00 3.85
1668 1809 1.382695 ACCTATAGCCGCACCACCT 60.383 57.895 0.00 0.00 0.00 4.00
1669 1810 1.227556 CACCTATAGCCGCACCACC 60.228 63.158 0.00 0.00 0.00 4.61
1670 1811 1.227556 CCACCTATAGCCGCACCAC 60.228 63.158 0.00 0.00 0.00 4.16
1671 1812 3.101796 GCCACCTATAGCCGCACCA 62.102 63.158 0.00 0.00 0.00 4.17
1672 1813 2.280865 GCCACCTATAGCCGCACC 60.281 66.667 0.00 0.00 0.00 5.01
1673 1814 2.280865 GGCCACCTATAGCCGCAC 60.281 66.667 0.00 0.00 39.87 5.34
1677 1818 4.331067 GCCCGGCCACCTATAGCC 62.331 72.222 2.24 0.00 46.17 3.93
1678 1819 3.556306 TGCCCGGCCACCTATAGC 61.556 66.667 7.03 0.00 0.00 2.97
1679 1820 2.426023 GTGCCCGGCCACCTATAG 59.574 66.667 3.64 0.00 0.00 1.31
1716 1857 4.016706 CACACCACCTCCGGGTCC 62.017 72.222 0.00 0.00 45.41 4.46
1717 1858 4.016706 CCACACCACCTCCGGGTC 62.017 72.222 0.00 0.00 45.41 4.46
1720 1861 4.704833 CAGCCACACCACCTCCGG 62.705 72.222 0.00 0.00 0.00 5.14
1721 1862 2.507110 CTACAGCCACACCACCTCCG 62.507 65.000 0.00 0.00 0.00 4.63
1722 1863 1.296715 CTACAGCCACACCACCTCC 59.703 63.158 0.00 0.00 0.00 4.30
1723 1864 1.296715 CCTACAGCCACACCACCTC 59.703 63.158 0.00 0.00 0.00 3.85
1724 1865 1.461461 ACCTACAGCCACACCACCT 60.461 57.895 0.00 0.00 0.00 4.00
1725 1866 1.302511 CACCTACAGCCACACCACC 60.303 63.158 0.00 0.00 0.00 4.61
1726 1867 1.302511 CCACCTACAGCCACACCAC 60.303 63.158 0.00 0.00 0.00 4.16
1727 1868 3.156714 CCACCTACAGCCACACCA 58.843 61.111 0.00 0.00 0.00 4.17
1728 1869 2.359975 GCCACCTACAGCCACACC 60.360 66.667 0.00 0.00 0.00 4.16
1735 1876 4.028490 TTGCCCGGCCACCTACAG 62.028 66.667 7.03 0.00 0.00 2.74
1736 1877 4.338710 GTTGCCCGGCCACCTACA 62.339 66.667 7.03 0.00 0.00 2.74
1826 1968 1.374252 CTGACCGGTCTGGGTTTCG 60.374 63.158 33.39 9.23 44.64 3.46
1853 1995 2.204151 ACCCTAGCACCAAGGCCT 60.204 61.111 0.00 0.00 32.34 5.19
2163 2438 3.368236 CGAACGAGGAGAAGGAACAAATC 59.632 47.826 0.00 0.00 0.00 2.17
2168 2443 2.159407 CCTACGAACGAGGAGAAGGAAC 60.159 54.545 0.14 0.00 35.99 3.62
2183 2458 1.748122 GAGACCCGAGCACCTACGA 60.748 63.158 0.00 0.00 0.00 3.43
2233 2508 5.567138 AAAGTGTTATGCATGCTTAGGTC 57.433 39.130 20.33 11.24 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.