Multiple sequence alignment - TraesCS6B01G072300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G072300 chr6B 100.000 2849 0 0 1 2849 48550833 48553681 0.000000e+00 5262
1 TraesCS6B01G072300 chr6B 87.243 486 57 4 1180 1661 704890658 704891142 1.490000e-152 549
2 TraesCS6B01G072300 chr6D 92.172 2274 82 34 1 2228 26349949 26352172 0.000000e+00 3125
3 TraesCS6B01G072300 chr6D 86.626 486 60 3 1180 1661 462422963 462423447 1.500000e-147 532
4 TraesCS6B01G072300 chr6D 84.949 392 32 12 2462 2849 26352623 26352991 3.470000e-99 372
5 TraesCS6B01G072300 chr6D 93.182 176 12 0 2285 2460 26352310 26352485 2.820000e-65 259
6 TraesCS6B01G072300 chr6D 95.652 46 2 0 2240 2285 26352206 26352251 1.090000e-09 75
7 TraesCS6B01G072300 chr6A 89.672 2285 120 47 1 2228 27771676 27773901 0.000000e+00 2806
8 TraesCS6B01G072300 chr6A 87.243 486 57 3 1180 1661 609176277 609176761 1.490000e-152 549
9 TraesCS6B01G072300 chr6A 85.309 388 39 9 2469 2849 27775812 27776188 4.450000e-103 385
10 TraesCS6B01G072300 chr6A 93.478 184 12 0 2285 2468 27774059 27774242 1.010000e-69 274
11 TraesCS6B01G072300 chr4B 86.525 1269 87 45 982 2183 653816 652565 0.000000e+00 1319
12 TraesCS6B01G072300 chr4B 79.075 411 40 32 127 508 654735 654342 1.020000e-59 241
13 TraesCS6B01G072300 chr4B 84.967 153 16 6 2697 2843 581151668 581151819 6.360000e-32 148
14 TraesCS6B01G072300 chr4D 87.887 1164 81 29 982 2102 1230732 1231878 0.000000e+00 1314
15 TraesCS6B01G072300 chr4D 76.071 677 60 60 127 732 1229857 1230502 2.820000e-65 259
16 TraesCS6B01G072300 chr4A 86.672 1223 87 46 934 2102 603540617 603539417 0.000000e+00 1286
17 TraesCS6B01G072300 chr4A 82.737 475 72 9 1204 1670 103068740 103069212 5.680000e-112 414
18 TraesCS6B01G072300 chr2A 85.161 155 16 5 2697 2846 459548688 459548840 4.920000e-33 152
19 TraesCS6B01G072300 chr2A 81.622 185 24 10 2666 2844 605305823 605306003 8.230000e-31 145
20 TraesCS6B01G072300 chr3D 82.162 185 23 10 2666 2844 597268230 597268050 1.770000e-32 150
21 TraesCS6B01G072300 chr3D 81.771 192 22 8 2662 2844 607315010 607314823 6.360000e-32 148
22 TraesCS6B01G072300 chr3D 79.412 204 33 7 2647 2843 593639859 593640060 4.950000e-28 135
23 TraesCS6B01G072300 chr1D 81.771 192 23 10 2662 2843 296632828 296632639 1.770000e-32 150
24 TraesCS6B01G072300 chr3A 81.977 172 24 4 2685 2849 749180214 749180385 3.830000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G072300 chr6B 48550833 48553681 2848 False 5262.00 5262 100.000000 1 2849 1 chr6B.!!$F1 2848
1 TraesCS6B01G072300 chr6D 26349949 26352991 3042 False 957.75 3125 91.488750 1 2849 4 chr6D.!!$F2 2848
2 TraesCS6B01G072300 chr6A 27771676 27776188 4512 False 1155.00 2806 89.486333 1 2849 3 chr6A.!!$F2 2848
3 TraesCS6B01G072300 chr4B 652565 654735 2170 True 780.00 1319 82.800000 127 2183 2 chr4B.!!$R1 2056
4 TraesCS6B01G072300 chr4D 1229857 1231878 2021 False 786.50 1314 81.979000 127 2102 2 chr4D.!!$F1 1975
5 TraesCS6B01G072300 chr4A 603539417 603540617 1200 True 1286.00 1286 86.672000 934 2102 1 chr4A.!!$R1 1168

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
427 504 0.040204 CCCCCTCCATGACAAAGCTT 59.96 55.0 0.0 0.0 0.0 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1874 2144 2.029739 TGATGCTTGGAAACGTCGACTA 60.03 45.455 14.7 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 48 1.694150 TGTGATGGTAGCAGGATAGCC 59.306 52.381 0.00 0.00 34.23 3.93
181 190 1.826720 TGTATGTCCGGGAGTTGTACC 59.173 52.381 0.00 0.00 0.00 3.34
283 302 6.208644 TGACATCATGTACACATACTGATCG 58.791 40.000 0.00 1.74 34.26 3.69
407 483 1.935873 CCTATCAACACACCTCATGCG 59.064 52.381 0.00 0.00 0.00 4.73
427 504 0.040204 CCCCCTCCATGACAAAGCTT 59.960 55.000 0.00 0.00 0.00 3.74
428 505 1.180029 CCCCTCCATGACAAAGCTTG 58.820 55.000 0.00 0.00 0.00 4.01
429 506 0.529378 CCCTCCATGACAAAGCTTGC 59.471 55.000 0.00 0.00 0.00 4.01
430 507 1.542492 CCTCCATGACAAAGCTTGCT 58.458 50.000 0.00 0.00 0.00 3.91
542 661 6.995091 AGCAACCAAAATCTCATACTAGATCC 59.005 38.462 0.00 0.00 35.10 3.36
566 711 0.257039 ATGGGAGCTAGCTGGTTTGG 59.743 55.000 24.99 0.00 0.00 3.28
602 751 1.000060 TGGCGCATAAGGTACGGATAC 60.000 52.381 10.83 0.00 0.00 2.24
604 753 2.546373 GGCGCATAAGGTACGGATACAA 60.546 50.000 10.83 0.00 32.40 2.41
690 852 4.226427 TCCATCTTCTTCTTGGTCATGG 57.774 45.455 0.00 0.00 0.00 3.66
695 857 4.848357 TCTTCTTCTTGGTCATGGAATCC 58.152 43.478 0.00 0.00 0.00 3.01
746 948 3.695556 CCCACACATATGCTGAATCACAA 59.304 43.478 1.58 0.00 0.00 3.33
805 1025 5.871524 GTGTTGACATGAAGCTTCTCTGATA 59.128 40.000 26.09 14.27 0.00 2.15
837 1057 2.309755 TGCTCAATTTCAGATCCAGGGT 59.690 45.455 0.00 0.00 0.00 4.34
850 1070 3.931907 TCCAGGGTATCATGGTGAAAG 57.068 47.619 6.57 0.00 44.55 2.62
851 1071 3.189606 TCCAGGGTATCATGGTGAAAGT 58.810 45.455 6.57 0.00 44.55 2.66
884 1104 5.136828 TGGGCAAGAAGTCAACTAATCAAA 58.863 37.500 0.00 0.00 0.00 2.69
905 1125 3.512516 GCTTGCTAGCCGCCCTTG 61.513 66.667 13.29 0.00 41.74 3.61
906 1126 2.825836 CTTGCTAGCCGCCCTTGG 60.826 66.667 13.29 0.00 38.05 3.61
907 1127 3.326578 TTGCTAGCCGCCCTTGGA 61.327 61.111 13.29 0.00 38.05 3.53
908 1128 2.819984 CTTGCTAGCCGCCCTTGGAA 62.820 60.000 13.29 0.00 38.05 3.53
909 1129 2.514824 GCTAGCCGCCCTTGGAAG 60.515 66.667 2.29 0.00 0.00 3.46
910 1130 2.990479 CTAGCCGCCCTTGGAAGT 59.010 61.111 0.00 0.00 0.00 3.01
911 1131 1.299976 CTAGCCGCCCTTGGAAGTT 59.700 57.895 0.00 0.00 0.00 2.66
912 1132 1.002624 TAGCCGCCCTTGGAAGTTG 60.003 57.895 0.00 0.00 0.00 3.16
913 1133 2.478335 TAGCCGCCCTTGGAAGTTGG 62.478 60.000 0.00 0.00 0.00 3.77
914 1134 2.434331 CCGCCCTTGGAAGTTGGA 59.566 61.111 0.00 0.00 0.00 3.53
915 1135 1.228429 CCGCCCTTGGAAGTTGGAA 60.228 57.895 0.00 0.00 0.00 3.53
916 1136 1.244019 CCGCCCTTGGAAGTTGGAAG 61.244 60.000 0.00 0.00 0.00 3.46
917 1137 0.537371 CGCCCTTGGAAGTTGGAAGT 60.537 55.000 0.00 0.00 0.00 3.01
971 1193 3.553922 CGAGGAAGGAAGCAAGCTATAGG 60.554 52.174 1.04 0.00 0.00 2.57
972 1194 2.105649 AGGAAGGAAGCAAGCTATAGGC 59.894 50.000 1.04 0.00 42.19 3.93
1614 1855 2.186644 CCCGTCATGGTGATCGCA 59.813 61.111 8.82 0.00 35.15 5.10
1680 1924 0.468214 CCGAGGAGGATCACCAGCTA 60.468 60.000 10.13 0.00 45.00 3.32
1791 2041 4.473520 CCGCCGAACCTGATGCCT 62.474 66.667 0.00 0.00 0.00 4.75
1874 2144 3.118112 CCTAGCACCATTCAATCAGGAGT 60.118 47.826 0.00 0.00 0.00 3.85
2037 2356 5.636543 CCAAAAATCATCTTGGAGTTGCTTC 59.363 40.000 0.00 0.00 44.16 3.86
2274 2664 2.753452 AGCCTGACATTGCTGAGAAATG 59.247 45.455 11.61 11.61 40.23 2.32
2367 2816 5.576384 TCCACAAATTTTAATCGCTTGATGC 59.424 36.000 0.00 0.00 38.57 3.91
2405 2854 6.825721 GGTTACTGAATCTCATTCCACATTCT 59.174 38.462 0.00 0.00 38.50 2.40
2407 2856 6.998968 ACTGAATCTCATTCCACATTCTTC 57.001 37.500 0.00 0.00 38.50 2.87
2460 4450 3.337834 CACAAGGTGGCCATGTGTA 57.662 52.632 24.02 0.00 44.89 2.90
2467 4457 2.041620 AGGTGGCCATGTGTAGTCATTT 59.958 45.455 9.72 0.00 0.00 2.32
2487 4510 7.970614 GTCATTTCATCAAGTTTATGGGACTTC 59.029 37.037 0.00 0.00 35.26 3.01
2490 4513 8.477419 TTTCATCAAGTTTATGGGACTTCTTT 57.523 30.769 0.00 0.00 35.26 2.52
2495 4518 9.981460 ATCAAGTTTATGGGACTTCTTTATTCT 57.019 29.630 0.00 0.00 35.26 2.40
2497 4520 8.678199 CAAGTTTATGGGACTTCTTTATTCTCC 58.322 37.037 0.00 0.00 35.26 3.71
2509 4532 6.006275 TCTTTATTCTCCTGATCCCCAAAG 57.994 41.667 0.00 0.00 0.00 2.77
2543 4566 7.391620 AGGAAAGACACGAGAATTTGGTATAA 58.608 34.615 0.00 0.00 0.00 0.98
2611 4637 5.941555 TTTTGTTTTTGAGGGTGTATGGT 57.058 34.783 0.00 0.00 0.00 3.55
2612 4638 5.941555 TTTGTTTTTGAGGGTGTATGGTT 57.058 34.783 0.00 0.00 0.00 3.67
2634 4660 6.092807 GGTTTTGTAGCACCAAACAATGAAAA 59.907 34.615 13.75 0.00 35.64 2.29
2659 4685 5.904362 AAATTGTGCTTCATTCTACCTCC 57.096 39.130 0.00 0.00 0.00 4.30
2661 4687 1.207089 TGTGCTTCATTCTACCTCCCG 59.793 52.381 0.00 0.00 0.00 5.14
2682 4708 0.037232 AGAAAGAAAGGGCGTCCTCG 60.037 55.000 10.20 0.00 44.07 4.63
2723 4762 4.710167 TCTGTCGCCGTCCTCCGA 62.710 66.667 0.00 0.00 39.56 4.55
2732 4771 3.139469 GTCCTCCGACGACTCCCC 61.139 72.222 0.00 0.00 0.00 4.81
2733 4772 3.336568 TCCTCCGACGACTCCCCT 61.337 66.667 0.00 0.00 0.00 4.79
2734 4773 2.829458 CCTCCGACGACTCCCCTC 60.829 72.222 0.00 0.00 0.00 4.30
2735 4774 3.203412 CTCCGACGACTCCCCTCG 61.203 72.222 0.00 0.00 39.68 4.63
2743 4782 2.042843 ACTCCCCTCGCCGAAGAT 60.043 61.111 0.00 0.00 0.00 2.40
2803 4842 3.242739 GCGTGTGGATAGTTTAAGCCATG 60.243 47.826 0.00 0.00 32.26 3.66
2808 4847 4.515567 GTGGATAGTTTAAGCCATGGTAGC 59.484 45.833 14.67 0.00 32.26 3.58
2822 4861 4.338400 CCATGGTAGCTTAGGTTTTTAGGC 59.662 45.833 2.57 0.00 0.00 3.93
2841 4880 0.449388 CTGTTCATCTTGGCTTCGGC 59.551 55.000 0.00 0.00 40.88 5.54
2843 4882 1.019278 GTTCATCTTGGCTTCGGCGA 61.019 55.000 4.99 4.99 42.91 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.247442 CATCACATGTGGATTTGCACAC 58.753 45.455 25.16 0.00 38.08 3.82
124 131 3.016031 TGTATGATTGCATGGACCACAC 58.984 45.455 0.00 0.00 35.94 3.82
125 132 3.362870 TGTATGATTGCATGGACCACA 57.637 42.857 0.00 0.00 35.94 4.17
181 190 3.250734 TGGGTAACGTGGTGGGGG 61.251 66.667 0.00 0.00 37.60 5.40
389 459 1.368641 GCGCATGAGGTGTGTTGATA 58.631 50.000 0.30 0.00 40.50 2.15
407 483 2.054453 GCTTTGTCATGGAGGGGGC 61.054 63.158 0.00 0.00 0.00 5.80
465 542 3.588210 AGCTAGAGGGTAGAAGAGGAC 57.412 52.381 0.00 0.00 0.00 3.85
542 661 1.142465 ACCAGCTAGCTCCCATCAATG 59.858 52.381 16.15 0.55 0.00 2.82
566 711 2.187707 CGCCATGAAATTGCAGCTAAC 58.812 47.619 0.00 0.00 34.03 2.34
602 751 7.039082 AGCTAGCTAGGAGAAGAAGGATAATTG 60.039 40.741 17.69 0.00 0.00 2.32
604 753 6.561294 AGCTAGCTAGGAGAAGAAGGATAAT 58.439 40.000 17.69 0.00 0.00 1.28
653 802 4.035102 GAACTGAAGGGCCCGGCT 62.035 66.667 18.44 4.64 0.00 5.52
659 808 2.797177 AGAAGATGGAACTGAAGGGC 57.203 50.000 0.00 0.00 0.00 5.19
665 814 4.645535 TGACCAAGAAGAAGATGGAACTG 58.354 43.478 0.00 0.00 37.66 3.16
690 852 4.362932 GCTCCTTGTTAGCTTTGGATTC 57.637 45.455 0.00 0.00 37.01 2.52
746 948 7.543172 TCGAAGAAAACGTGCTACAAATATAGT 59.457 33.333 0.00 0.00 0.00 2.12
805 1025 9.745880 GATCTGAAATTGAGCATACAAATGAAT 57.254 29.630 0.00 0.00 34.84 2.57
837 1057 6.595326 CAGCTAGTTTCACTTTCACCATGATA 59.405 38.462 0.00 0.00 0.00 2.15
850 1070 2.185004 TCTTGCCCAGCTAGTTTCAC 57.815 50.000 0.00 0.00 33.51 3.18
851 1071 2.106511 ACTTCTTGCCCAGCTAGTTTCA 59.893 45.455 0.00 0.00 33.51 2.69
859 1079 2.185004 TAGTTGACTTCTTGCCCAGC 57.815 50.000 0.00 0.00 0.00 4.85
860 1080 4.326826 TGATTAGTTGACTTCTTGCCCAG 58.673 43.478 0.00 0.00 0.00 4.45
861 1081 4.365514 TGATTAGTTGACTTCTTGCCCA 57.634 40.909 0.00 0.00 0.00 5.36
862 1082 5.705609 TTTGATTAGTTGACTTCTTGCCC 57.294 39.130 0.00 0.00 0.00 5.36
904 1124 3.662759 AGTTCCAACTTCCAACTTCCA 57.337 42.857 0.00 0.00 35.21 3.53
905 1125 4.275196 GTGTAGTTCCAACTTCCAACTTCC 59.725 45.833 0.00 0.00 40.37 3.46
906 1126 4.879545 TGTGTAGTTCCAACTTCCAACTTC 59.120 41.667 0.00 0.00 40.37 3.01
907 1127 4.850680 TGTGTAGTTCCAACTTCCAACTT 58.149 39.130 0.00 0.00 40.37 2.66
908 1128 4.497291 TGTGTAGTTCCAACTTCCAACT 57.503 40.909 0.00 0.00 40.37 3.16
909 1129 4.036380 CCTTGTGTAGTTCCAACTTCCAAC 59.964 45.833 0.00 0.00 40.37 3.77
910 1130 4.080243 TCCTTGTGTAGTTCCAACTTCCAA 60.080 41.667 0.00 0.07 40.37 3.53
911 1131 3.456644 TCCTTGTGTAGTTCCAACTTCCA 59.543 43.478 0.00 0.00 40.37 3.53
912 1132 4.081322 TCCTTGTGTAGTTCCAACTTCC 57.919 45.455 0.00 0.00 40.37 3.46
913 1133 5.365619 TCTTCCTTGTGTAGTTCCAACTTC 58.634 41.667 0.00 0.00 40.37 3.01
914 1134 5.367945 TCTTCCTTGTGTAGTTCCAACTT 57.632 39.130 0.00 0.00 40.37 2.66
915 1135 5.130477 TCTTCTTCCTTGTGTAGTTCCAACT 59.870 40.000 0.00 0.00 42.91 3.16
916 1136 5.365619 TCTTCTTCCTTGTGTAGTTCCAAC 58.634 41.667 0.00 0.00 0.00 3.77
917 1137 5.623956 TCTTCTTCCTTGTGTAGTTCCAA 57.376 39.130 0.00 0.00 0.00 3.53
971 1193 3.447944 ACCTAACCTAACTCTGTGCTAGC 59.552 47.826 8.10 8.10 0.00 3.42
972 1194 4.142138 CCACCTAACCTAACTCTGTGCTAG 60.142 50.000 0.00 0.00 0.00 3.42
973 1195 3.767673 CCACCTAACCTAACTCTGTGCTA 59.232 47.826 0.00 0.00 0.00 3.49
976 1198 4.087182 TCTCCACCTAACCTAACTCTGTG 58.913 47.826 0.00 0.00 0.00 3.66
977 1199 4.044317 TCTCTCCACCTAACCTAACTCTGT 59.956 45.833 0.00 0.00 0.00 3.41
978 1200 4.601084 TCTCTCCACCTAACCTAACTCTG 58.399 47.826 0.00 0.00 0.00 3.35
1299 1540 4.864334 CCGCTGGCCACCTCCATC 62.864 72.222 0.00 0.00 35.22 3.51
1614 1855 2.746277 GCGTTGGCGAAGGTGGAT 60.746 61.111 3.11 0.00 41.33 3.41
1838 2088 2.289592 GCTAGGTAGCTAGTAGGGCA 57.710 55.000 25.63 0.00 45.62 5.36
1859 2121 4.363999 GTCGACTACTCCTGATTGAATGG 58.636 47.826 8.70 0.00 0.00 3.16
1862 2124 3.079578 ACGTCGACTACTCCTGATTGAA 58.920 45.455 14.70 0.00 0.00 2.69
1874 2144 2.029739 TGATGCTTGGAAACGTCGACTA 60.030 45.455 14.70 0.00 0.00 2.59
2037 2356 4.607293 TTCCTCATACATGAATCGGAGG 57.393 45.455 0.00 8.36 42.53 4.30
2082 2405 3.273434 TGATCACTAACCAATCTGCAGC 58.727 45.455 9.47 0.00 0.00 5.25
2134 2461 8.806630 AGAGATGGGGGTATATATAAGAGACAT 58.193 37.037 0.00 0.00 0.00 3.06
2137 2464 8.506921 CAGAGAGATGGGGGTATATATAAGAGA 58.493 40.741 0.00 0.00 0.00 3.10
2148 2475 4.287067 GCAATAATCAGAGAGATGGGGGTA 59.713 45.833 0.00 0.00 36.96 3.69
2152 2479 4.156190 GCATGCAATAATCAGAGAGATGGG 59.844 45.833 14.21 0.00 36.96 4.00
2184 2511 4.922206 ACTTTGTGAATTATGCAGGGAGA 58.078 39.130 0.00 0.00 0.00 3.71
2367 2816 5.947228 TTCAGTAACCAAAAGATGAGCAG 57.053 39.130 0.00 0.00 0.00 4.24
2376 2825 6.775142 TGTGGAATGAGATTCAGTAACCAAAA 59.225 34.615 0.00 0.00 41.03 2.44
2405 2854 6.542005 ACATCAACCTATCATAACATTGCGAA 59.458 34.615 0.00 0.00 0.00 4.70
2407 2856 6.304356 ACATCAACCTATCATAACATTGCG 57.696 37.500 0.00 0.00 0.00 4.85
2460 4450 7.177878 AGTCCCATAAACTTGATGAAATGACT 58.822 34.615 0.00 0.00 0.00 3.41
2467 4457 9.753674 AATAAAGAAGTCCCATAAACTTGATGA 57.246 29.630 0.00 0.00 37.10 2.92
2487 4510 6.006275 TCTTTGGGGATCAGGAGAATAAAG 57.994 41.667 0.00 0.00 0.00 1.85
2490 4513 5.787494 CCTATCTTTGGGGATCAGGAGAATA 59.213 44.000 0.00 0.00 0.00 1.75
2495 4518 3.724966 TCCTATCTTTGGGGATCAGGA 57.275 47.619 0.00 0.00 0.00 3.86
2497 4520 5.787494 TCCTAATCCTATCTTTGGGGATCAG 59.213 44.000 0.00 0.00 38.73 2.90
2509 4532 6.636562 TCTCGTGTCTTTCCTAATCCTATC 57.363 41.667 0.00 0.00 0.00 2.08
2593 4619 5.666462 ACAAAACCATACACCCTCAAAAAC 58.334 37.500 0.00 0.00 0.00 2.43
2594 4620 5.941555 ACAAAACCATACACCCTCAAAAA 57.058 34.783 0.00 0.00 0.00 1.94
2595 4621 5.010213 GCTACAAAACCATACACCCTCAAAA 59.990 40.000 0.00 0.00 0.00 2.44
2596 4622 4.521256 GCTACAAAACCATACACCCTCAAA 59.479 41.667 0.00 0.00 0.00 2.69
2597 4623 4.076394 GCTACAAAACCATACACCCTCAA 58.924 43.478 0.00 0.00 0.00 3.02
2598 4624 3.073209 TGCTACAAAACCATACACCCTCA 59.927 43.478 0.00 0.00 0.00 3.86
2599 4625 3.439129 GTGCTACAAAACCATACACCCTC 59.561 47.826 0.00 0.00 0.00 4.30
2611 4637 7.672983 TTTTTCATTGTTTGGTGCTACAAAA 57.327 28.000 7.74 0.00 41.53 2.44
2638 4664 4.273318 GGGAGGTAGAATGAAGCACAATT 58.727 43.478 0.00 0.00 0.00 2.32
2639 4665 3.682718 CGGGAGGTAGAATGAAGCACAAT 60.683 47.826 0.00 0.00 0.00 2.71
2649 4675 5.338463 CCTTTCTTTCTTCGGGAGGTAGAAT 60.338 44.000 3.05 0.00 33.32 2.40
2654 4680 1.351350 CCCTTTCTTTCTTCGGGAGGT 59.649 52.381 0.00 0.00 37.05 3.85
2659 4685 0.796927 GACGCCCTTTCTTTCTTCGG 59.203 55.000 0.00 0.00 0.00 4.30
2661 4687 2.077627 GAGGACGCCCTTTCTTTCTTC 58.922 52.381 0.00 0.00 44.53 2.87
2695 4721 0.667792 GGCGACAGAAGAAGACGCTT 60.668 55.000 0.00 0.00 46.71 4.68
2699 4725 0.733223 GGACGGCGACAGAAGAAGAC 60.733 60.000 16.62 0.00 0.00 3.01
2724 4763 4.194720 CTTCGGCGAGGGGAGTCG 62.195 72.222 11.60 0.00 43.08 4.18
2725 4764 2.077821 GATCTTCGGCGAGGGGAGTC 62.078 65.000 19.22 8.66 0.00 3.36
2726 4765 2.042843 ATCTTCGGCGAGGGGAGT 60.043 61.111 19.22 0.55 0.00 3.85
2727 4766 1.801309 GAGATCTTCGGCGAGGGGAG 61.801 65.000 19.22 9.59 0.00 4.30
2728 4767 1.828660 GAGATCTTCGGCGAGGGGA 60.829 63.158 19.22 14.34 0.00 4.81
2729 4768 2.731374 GAGATCTTCGGCGAGGGG 59.269 66.667 19.22 9.46 0.00 4.79
2730 4769 2.333225 CGAGATCTTCGGCGAGGG 59.667 66.667 19.22 11.95 45.54 4.30
2740 4779 0.322636 ACCACTGACGACCGAGATCT 60.323 55.000 0.00 0.00 0.00 2.75
2743 4782 1.228033 TCACCACTGACGACCGAGA 60.228 57.895 0.00 0.00 0.00 4.04
2780 4819 1.326548 GGCTTAAACTATCCACACGCG 59.673 52.381 3.53 3.53 0.00 6.01
2797 4836 3.739401 AAAACCTAAGCTACCATGGCT 57.261 42.857 13.04 0.00 42.31 4.75
2803 4842 4.586884 ACAGCCTAAAAACCTAAGCTACC 58.413 43.478 0.00 0.00 0.00 3.18
2808 4847 7.308435 CAAGATGAACAGCCTAAAAACCTAAG 58.692 38.462 0.00 0.00 0.00 2.18
2822 4861 0.449388 GCCGAAGCCAAGATGAACAG 59.551 55.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.